<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">
Dear Proteopedians,
<div class=""><br class="">
</div>
<div class="">We implemented several changes on SAT. Please report bugs and send suggestions for changes and improvements. </div>
<div class=""><br class="">
</div>
<div class=""><b class="">Seqtool</b>: displays the sequence of the structure in the JSmol applet. It appears on seeded pages, and users may insert it on their own pages as described at <a href="https://proteopedia.org/w/Seqtool" class="">https://proteopedia.org/w/Seqtool</a> .
</div>
<div class=""><br class="">
</div>
<div class=""><b class="">Color scale reference</b>: SAT inserts the color reference on new scenes. We could make optional to insert the scale. <a href="https://proteopedia.org/w/User:Jaime_Prilusky/Test/alphaFold" class="">https://proteopedia.org/w/User:Jaime_Prilusky/Test/alphaFold</a></div>
<div class=""><br class="">
</div>
<div class=""><b class="">Color by pLDDT</b>: The [colors] tab on SAT offers the option to color by pLDDT on uploaded structures generated by AlphaFold, RoseTTAfold and ESMfold. Try these available uploaded structures:</div>
<div class="">
<div class="">AlphaFold_AF-L8XZM1-F1-model_v4.pdb</div>
<div class="">ESM_1EZG_Antifreeze_protein.pdb</div>
<div class="">RTF_1MW5_1_pLDDT.pdb</div>
</div>
<div class=""><br class="">
</div>
<div class=""><b class="">Predict structure from sequence</b>: A new area on SAT's [load molecule] receives a raw protein sequence, sends it to ESMfold and uploads to Proteopedia the resulting predicted structure. Also, the structure gets loaded on SAT, ready
for preparing a scene.</div>
<div class=""><br class="">
</div>
<div class="">Angel and Jaim</div>
</div>
</div>
</div>
</div>
</div>
</div>
</body>
</html>