[S2s-users] [S2S-Assemble] S2S 2.0.3 and Assemble 1.0.4 are available

Fabrice Jossinet f.jossinet at ibmc-cnrs.unistra.fr
Sat Feb 12 14:42:11 EST 2011

Dear S2S and Assemble user,

We have released Assemble 1.0.4 and S2S 2.0.3. You can follow these links to get them directly:

- for Assemble 1.0.4: http://ftp.bioinformatics.org/pub/assemble/1.0.4/Assemble_1.0.4.zip
- for S2S 2.0.3: http://ftp.bioinformatics.org/pub/s2s/2.0.3/S2S_2.0.3.zip

You will find mainly:

- a fix to load the Rfam alignments formatted with the Stockholm format (S2S)
- a fix to merge several secondary structures (2D Model -> Import... in Assemble)
- a fix for the first save of your data under Windows (S2S and Assemble)
- a fix to refine a 3D model made with several RNA molecules (Assemble)
- any RNA molecule of an S2S alignment can be defined as a reference molecule
- an S2S alignment can be extended with molecules stored in a PDB file
- an S2S alignment can be constructed from an Assemble model 

When Assemble 1.0.4 is launched for the first time, it will take some time to re-index all the 3D structures stored in the MyPDB library. 

You can find all the details about the improvements and the bugs fixed in the CHANGELOG files provided with each tool. 

We hope that you will enjoy these new versions.

Best Regards,


Dr. Fabrice Jossinet
Laboratoire de Bioinformatique, modélisation et simulation des acides nucléiques 
Université de Strasbourg
Institut de biologie moléculaire et cellulaire du CNRS
UPR9002, Architecture et Reactivite de l'ARN 
15 rue Rene Descartes
F-67084 Strasbourg Cedex

Tel + 33 (0) 3 88 41 70 53 
FAX + 33 (0) 3 88 60 22 18

f.jossinet at ibmc.u-strasbg.fr 

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