[Scriptome-users] Merging with scriptome command

[Peggy White]

So this is a wonderful web page that was pointed out to me the other day!

I have 2 files that I would like to combine.  File 1 contains:
chrno,marker,homozygotes,rare,observed,expected,pvalue,af
01,rs11206709,714,6,178,169,0.2147,Cases
01,rs11206709,746,11,158,162,0.4557,Controls
01,rs11206709,1457,17,336,331,0.7017,Unrelated
06,rs734560,504,52,388,356,0.0092,Cases
06,rs734560,550,96,354,381,0.0332,Controls
06,rs734560,1053,147,740,735,0.8629,Unrelated
04,rs7659192,685,16,206,206,1.0000,Cases
04,rs7659192,697,21,206,213,0.2611,Controls
04,rs7659192,1378,37,413,420,0.4214,Unrelated

File 2 contains counts of inheritance inconsistencies:
01,rs10157092,1
01,rs10157835,2
01,rs10429923,1
01,rs10493696,1
01,rs10494391,1
01,rs10495114,1
01,rs10733060,1
01,rs10753515,1
01,rs1075364,2

File 1 contains 952,185 lines minus header and File 2 contains 7632.  The 
majority of the markers don't have an inconsistency.

I would like to merge these files together by marker and have File 1 
contain a new column of counts of inheritance inconsistencies.  I tried 
using the merge command with $col1=1 but got an empty output file.

Thanks very much in advance, Peggy White 5/24