[Scriptome-users] help running Perl

Kinshuk Nayak kinshuk_nayak at yahoo.co.in
Wed Feb 11 03:37:31 EST 2009

I want to use script
perl -e '
while(<>) {
if (/^>\S+/) {
if (! ($seen{$&}++)) {
$print_it = 1
else {
$print_it = 0

if ($print_it) {
print $_
warn "\nChose $unique unique FASTA records out of $total total.\n\n";
' a.fsa > unique.fsa
When i am saving the file and trying to run in perl installed directory the message is
Bareword found where operator expected at C:\NELU\PERL\duplicate.pl line 21, nea
r "' a"
  (Might be a runaway multi-line '' string starting on line 1)
        (Missing operator before a?)
syntax error at C:\NELU\PERL\duplicate.pl line 1, near "perl -e "
Execution of C:\NELU\PERL\duplicate.pl aborted due to compilation errors.
Could you please suggest me some ways to solve it

Kinshuk Chandra Nayak 

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