[ssml] HMM

Dan Bolser dmb at mrc-dunn.cam.ac.uk
Tue Jan 6 15:22:36 EST 2004


hmm...

Can I ask about the null models?

I guess I thought the allignment would just pop out at the end...

++ Kevin Karplus--
>
> One can write a simple HMM scoring program in a few lines, but it will be rather
> slow.  Training takes more lines.  Doing sequence weighting take still more.
> Doing space-efficient scoring with recovery of
> alignment takes quite a few.  Handling various different null models takes more
> lines.  Handling calibration of the E-values takes some more lines.
>
> After a while, it all adds up.






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