Chimera's MultAlignViewer tool allows you to save subsections of an alignment. That feature is described here: http://www.cgl.ucsf.edu/chimera/1.2038/docs/ContributedSoftware/ multalignviewer/multalignviewer.html#editing You can get Chimera itself from: http://www.cgl.ucsf.edu/chimera Eric Pettersen UCSF Computer Graphics Lab pett at cgl.ucsf.edu http://www.cgl.ucsf.edu On Nov 30, 2004, at 10:43 AM, Goel, Manisha wrote: > Hi All, > > I have been looking for an alignment editor/ script that will extract > blocks of multiple sequence alignment (when given the residue numbers > etc.) from a longer multiple sequence alignment. > > Any suggetions will be helpful. > > Thanks, > - Manisha Goel -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 1383 bytes Desc: not available Url : http://bioinformatics.org/pipermail/ssml-general/attachments/20041130/ba537a70/attachment.bin