[ssml] Re: [Bioclusters] mpiBLAST and NCBI Blast? BioseqFindFunc: couldn't uncache

Joe Landman landman at scalableinformatics.com
Wed Sep 8 08:18:53 EDT 2004

Dan Bolser wrote:

>formatdb -i sequences.fa -o T
>blastall -d sequences.fa -p blastp -i domain_sequences.fa  -m 8 -a4 > results


>I use -m 8 because I don't care about the alignment, but perhaps that
>would give clues to the error.
>If you like I can re-run the problem sequences with -m 7 and send along
>some results.

Try omitting the -m # entirely, or use -m 7 .


Joseph Landman, Ph.D
Scalable Informatics LLC,
email: landman at scalableinformatics.com
web  : http://www.scalableinformatics.com
phone: +1 734 612 4615

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