[ssml] Re: [Bioclusters] mpiBLAST and NCBI Blast? BioseqFindFunc: couldn't uncache

[Joe Landman]

Dan Bolser wrote:

>formatdb -i sequences.fa -o T
>blastall -d sequences.fa -p blastp -i domain_sequences.fa  -m 8 -a4 > results
>  
>

...


>I use -m 8 because I don't care about the alignment, but perhaps that
>would give clues to the error.
>
>If you like I can re-run the problem sequences with -m 7 and send along
>some results.
>  
>

Try omitting the -m # entirely, or use -m 7 .


>Cheers,
>Dan.
>  
>


-- 
Joseph Landman, Ph.D
Scalable Informatics LLC,
email: landman at scalableinformatics.com
web  : http://www.scalableinformatics.com
phone: +1 734 612 4615