On Fri, 29 Apr 2005, Ratna Rajesh Thangudu wrote: >Dear All, > >I have a set of multiple alignments which I want to convert into PSSM >profiles (searchable byr RPSblast). Could anyone please tell how to >achieve this? I remember some tools to convert between HMMER / SAM / PSSM, and I know HMMER will make a model from a multiple alignment, so you could then convert your HMMER model to a PSSM. Right now I can't find the page of these tools. Will psiblast (or related tools in the ncbi toolkit) not do it for you? I am sure you can find something on google somewhere if you keep looking :) > >Thanks in advance. > >Rajesh >_______________________________________________ >ssml-general mailing list >ssml-general at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/ssml-general >