retrouve.all {HAPim}R Documentation

haplotype reconstruction

Description

The function finds alleles of the associated haplotype. It can be viewed as an internal function. The user does not have to call it by himself.

Usage

retrouve.all(assoc, res.structure, all.marq)

Arguments

assoc numeric value, associated haplotype.
res.structure results provided by structure.hap() function, list of objects.
all.marq results provided by allele.marq() function, list of alleles for each marker.

Value

The returned value is a character which corresponds to the concatenation of alleles of the associated haplotype.

Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

See Also

structure.hap, allele.marq


[Package HAPim version 1.3 Index]