esp.freq.hap {HAPim}R Documentation

expectation of extended haplotype frequencies

Description

This function computes the expectation of (haplotype + Q allele) frequencies under a Wrigth-Fisher model. The function can be viewed as an internal function. The user does not have to call it by himself.

Usage

esp.freq.hap(hap.assoc, piQ.t0, timeT, pi.hap, res.structure, poids.D)

Arguments

hap.assoc numeric value, associated haplotype.
piQ.t0 frequency of Q allele at time t=0.
timeT time of population evolution.
pi.hap provided by pi.hap() function, list of numeric objects.
res.structure provided by structure.hap() function, list of numeric objects.
poids.D provided by poids.D() function, list of numeric objects.

Value

The value returned is a numeric vector containing for each observed haplotype, the frequencies of its extension with the Q allele.

Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

See Also

pi.hap, structure.hap, poids.D


[Package HAPim version 1.3 Index]