esp.freq.hap {HAPim} | R Documentation |
This function computes the expectation of (haplotype + Q allele) frequencies under a Wrigth-Fisher model. The function can be viewed as an internal function. The user does not have to call it by himself.
esp.freq.hap(hap.assoc, piQ.t0, timeT, pi.hap, res.structure, poids.D)
hap.assoc |
numeric value, associated haplotype. |
piQ.t0 |
frequency of Q allele at time t=0. |
timeT |
time of population evolution. |
pi.hap |
provided by pi.hap() function, list of numeric objects. |
res.structure |
provided by structure.hap() function, list of numeric objects. |
poids.D |
provided by poids.D() function, list of numeric objects. |
The value returned is a numeric vector containing for each observed haplotype, the frequencies of its extension with the Q allele.
S. Dejean, N. Oumouhou, D. Estivals, B. Mangin
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.
pi.hap
, structure.hap
, poids.D