pi.hap {HAPim}R Documentation

haplotype frequencies

Description

This function computes the frequencies of each haplotype. The function can be viewed as an internal function. The user does not have to call it by himself.

Usage

pi.hap(freq.marq, res.structure)

Arguments

freq.marq results provided by freq.all() function, list of numeric objects which contains the allele frequencies.
res.structure results provided by structure.hap() function, list of objects.

Value

The returned value is a list of numeric vectors containing haplotypes freqencies estimated under marker independency.

Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

See Also

freq.all, structure.hap


[Package HAPim version 1.3 Index]