obj.LDL.add {HAPim}R Documentation

log-likelihood value of the HAPimLDL method under H1

Description

The function gives the log-likelihood value of the HAPimLDL method under alternative hypothesis H1. It can be viewed as an internal function. The user does not have to call it by himself.

Usage

obj.LDL.add(param,don)

Arguments

param numeric vector of length=5 containing containing parameters to maximize:

-error variance

-Q allele effect

-evolution time

-Q allele frequency at time t=0

-performance mean

don list of 12 objects. Some objects are results provided by descendant.pere(), moyenne.pere(), corresp(), pi.hap(), structure.hap(), poids.D() functions.

Value

The returned value is the log-likelihood value of the HAPimLDL method under alternative hypothesis H1.

Author(s)

S. Dejean, N. Oumouhou, D. Estivals, B. Mangin

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

See Also

depart.LDL, descendant.pere, moyenne.pere, corresp, pi.hap, structure.hap, poids.D


[Package HAPim version 1.3 Index]