GWAS.SampleData {PLIS}R Documentation

Sample GWAS Dataset

Description

Sample GWAS Dataset with 400 SNPs from Chromosome 1 and 6 (200 SNPs each).

Usage

data(GWAS.SampleData)

Format

A data frame with 400 observations on the following 6 variables.

CHR
Chromosome ID
SNP
rs Id
BP
Phisical Position
OR
Odds Ratio
CHISQ
1 d.f. Chi Square test Statistic
P
P value of 1 d.f. Chi Square test Statistic

Details

The required values (Odds ratio and P value) can be calculated by using PLINK

References

Supplementary Material of Multiple Testing in Genome-Wide Association Studies via Hidden Markov Models, Bioinformatics, 2009

Examples

data(GWAS.SampleData)

[Package PLIS version 1.0 Index]