Phylogenetic Tree Simulation Package

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Documentation for package ‘PhySim’ version 1.0

Help Pages

birthdeath.simulation Simulate batches of birth death Trees
birthdeath.tree Simulate a birth death phylogenetic tree
extract.sister Extract sister species pairs
lagtime Correction for lag-time to speciation along a phylogeny
lagtime.batch Correct for lag-time to speciation along a series of phylogenetic trees
readPhySim.tree Read Tree File in Parenthetic Format
writePhySim.tree Write Tree File in Parenthetic Format