bin_by_num {genomatic} | R Documentation |
Graphical output of bin quality. Creates plots of bin width as a function number of peaks in the bin.
bin_by_num(locus, loci, ident = 0)
locus |
allele characteristics produced ‘allele\_char’ |
loci |
a data.frame of locus names |
ident |
flag to enable interactive identification of points when set to 1. Default is no. |
Graphical output of bin quality. Creates plots of bin width as a function number of peaks in the bin. A heavy line is plotted at one base pair and thinner lines are plotted at 1.1, 1.2, 1.3, and 1.4 base pairs. It seems intuitive that a bin should not range more than a base pair, however experience suggests that bins that range more than a single base pair are frequently acceptable. This could be due to error in the size calling (how close the peak is to a size standard), among capillary error (capillary quality may induce error), or other unforeseen issues.
Returns a NULL.
Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com
Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.