allele_char {genomatic} | R Documentation |
Records the mean, standard deviation, minimum, maximum, and count for each allele in a locus.
allele_char(allele.v, allele.df)
allele.v |
All the peaks for a locus. |
allele.df |
an allele file containing bin mixima and minima in columns 8 and 9. |
Characterizes bins based on allele data. Alleles in allele.v are sorted from smallest to biggest and then sorted into bins based on the min and max included in allele.df. A mean is recorded and rounded to produce an allele name. Standard deviation, min, max, count and range are also recorded. Complete allele files are printed to file, one for each locus.
returns a data.frame.
Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com
Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.