allele_char {genomatic}R Documentation

Characterizes bins

Description

Records the mean, standard deviation, minimum, maximum, and count for each allele in a locus.

Usage

allele_char(allele.v, allele.df)

Arguments

allele.v All the peaks for a locus.
allele.df an allele file containing bin mixima and minima in columns 8 and 9.

Details

Characterizes bins based on allele data. Alleles in allele.v are sorted from smallest to biggest and then sorted into bins based on the min and max included in allele.df. A mean is recorded and rounded to produce an allele name. Standard deviation, min, max, count and range are also recorded. Complete allele files are printed to file, one for each locus.

Value

returns a data.frame.

Author(s)

Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com

References

Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.


[Package genomatic version 0.0-7 Index]