bin_caller {genomatic}R Documentation

Bins peaks

Description

Uses allele characteristics to call bins.

Usage

bin_caller(locus, locus_char, ploid=2)

Arguments

locus a data.frame containing all the peaks to be binned
locus\_char a table output from ‘allele\_char’ containing characteristics of the alleles (mean, sd, etc.)
ploid describes whether allelic data is spread over one column (haploid) or two (diploid).

Details

Uses allele characteristics to call bins. If a particular peak does not fall within any of the bins it is flagged with an 'NA.'

Value

Returns a NULL.

Author(s)

Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com

References

Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.


[Package genomatic version 0.0-7 Index]