abi_sub {genomatic}R Documentation

Creates ABI submission forms

Description

Takes a 96-well plate and converts it into a submission form for ABI genotyping.

Usage

abi_sub(plate, fset, outfile)

Arguments

plate A 96-well plate of samples
fset filter set to be used
outfile Name of the outfile (ABI submission form) to be created

Details

This function takes a 96-well plate and converts it into an ABI format submission file. The well location is indicated. A sample name is created by concatenating the well and the sample name. The color number is indicated. The standard dye, dye set, and color info is set based on the color info input by the user. A color comment is created by concatenating the sample name (with well number), the color info, and the information provided in ‘loci\_cats.’ This is output to a comma delimited file which can be directly used by the ABI software or it can be opened with a spreadsheet and saved in a proprietary format.

Value

Returns a NULL.

Author(s)

Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com

References

Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.


[Package genomatic version 0.0-7 Index]