allele_process {genomatic}R Documentation

Processes alleles into bins

Description

Processes alleles into bins for the entire project. Descriptive plots and text output are created.

Usage

allele_process(gmtc, allele.l)

Arguments

gmtc a genomatic data.frame.
allele.l a list where each element contains a genomatic allele file.

Details

Processes alleles into bins for characterization. Alleles are binned by the min and max provided in columns 8 and 9 of each allele file. Histograms are created for each locus with alternating color to indicate bins. Range by count plots are provided to find bins that are unusually wide.

Value

Returns a NULL.

Author(s)

Brian J. Knaus bknaus@fs.fed.us http://brianknaus.com

References

Knaus, B.J. In prep. Genomatic: an R package for DNA fragment analysis project management.


[Package genomatic version 0.0-7 Index]