compute.pod {iCluster} | R Documentation |
A function to compute the proportion of deviation from perfect block diagonal matrix.
compute.pod(fit)
fit |
A iCluster object |
pod |
proportion of deviation from perfect block diagonal matrix |
Ronglai Shen shenr@mskcc.org
Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.
# library(iCluster) # data(breast.chr17) # fit=iCluster(breast.chr17, k=4, lambda=c(0.2,0.2)) # plotiCluster(fit=fit, label=rownames(breast.chr17[[2]])) # compute.pod(fit)