Synthesizing List of Differentially Expressed Features


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Documentation for package ‘sdef’ version 1.5

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sdef-package Synthesizing List of Differentially Expressed Features
baymod Bayesian model for the ratio of observed to expected probability of features to be in common
createTable Function to create an output table
designCount Internal function
designMatrix Internal function
Example3Lists Molecular Differences between Mammalian Sexes.
extractFeatures.R Extracting the lists of features of interest
extractFeatures.T Extracting the lists of features of interest
Liver.Muscle Diabetes susceptibility in liver and skeletal muscle of mice.
ratio Ratio Th between the observed features in common and the expected ones
sdef Synthesizing List of Differentially Expressed Features
simulation Simulate p-values for two related experiments
simulation.indep Simulate p-values for two indipendent experiments
Tmc Empirical null distribution of max T(h)