Example3Lists {sdef} | R Documentation |
This dataset contains three lists of p-values obtained from a publicly available experiment to evaluate differential expression between mammalian sexes in three tissues (hypothalamus, kidney and liver).
data(Example3Lists)
The format is: a matrix with 6477 rows and 3 columns. For each gene (row) it reports the p-values of being differentially expressed between male and female mice for the three tissues.
http://www.ncbi.nlm.nih.gov/geo, accession number GSE1147-GSE1148
Rinn J, Rozowsky J, Laurenzi I, Petersen P, Zou ZW K, Gerstein M, Snyder1 M: Major Molecular Differences between Mammalian Sexes Are Involved in Drug Metabolism and Renal Function. Developmental Cell 2004, 6:791-800
#data(Example3Lists) #Th<- ratio(data=Example3Lists) #Rh<- baymod(iter=100,output.ratio=Th) #MC<- Tmc(iter=100,output.ratio=Th) #The gene names can be obtained using the command dimnames: #feat.names = dimnames(Example3Lists)[[1]] #feat.lists <- extractFeatures.R(output.ratio=Th,output.bay=Rh,feat.names=feat.names,h=NULL) #feat.lists.T <- extractFeatures.T(output.ratio=Th,feat.names=feat.names) #output.table <- createTable(output.ratio=Th,output.bay=Rh)