Synthesizing List of Differentially Expressed Features

Documentation for package ‘sdef’ version 1.5

sdef-package	Synthesizing List of Differentially Expressed Features
baymod	Bayesian model for the ratio of observed to expected probability of features to be in common
createTable	Function to create an output table
designCount	Internal function
designMatrix	Internal function
Example3Lists	Molecular Differences between Mammalian Sexes.
extractFeatures.R	Extracting the lists of features of interest
extractFeatures.T	Extracting the lists of features of interest
Liver.Muscle	Diabetes susceptibility in liver and skeletal muscle of mice.
ratio	Ratio Th between the observed features in common and the expected ones
sdef	Synthesizing List of Differentially Expressed Features
simulation	Simulate p-values for two related experiments
simulation.indep	Simulate p-values for two indipendent experiments
Tmc	Empirical null distribution of max T(h)