PredictBias

		>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein

		           signature.

		          Length = 170

		

		 Score = 29.9 bits (67), Expect = 0.015

		 Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 15/79 (18%)

		

		Query: 368 KNIRKDVVGPVWLVNTPKFISPLAKSSIDDPNTVQRFQPIMLGSELGNGFSELNDPID-- 425

		             + +  +        P  + P A+  +        F  + L             P++  

		Sbjct: 98  SGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNRGTFPALNL------------SPVNFD 145

		

		Query: 426 -QYGRFIEQQAMRDSGDDE 443

		             +  ++++Q   +   +E

		Sbjct: 146 ALFMDYLQRQEQAEQTTEE 164

		

		

		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

		          Length = 1104

		

		 Score = 29.3 bits (65), Expect = 0.040

		 Identities = 16/65 (24%), Positives = 27/65 (41%)

		

		Query: 71  TDMQKGIGASVLPEYKPDTVTQYGREYATLSPDDLAKLRSRSDIDNVQPLYNLTPKYATF 130

		           TD  + +G S+ P    +       E   ++  DL +L      +NV  L+N      TF

		Sbjct: 72  TDNNRPLGPSIAPSRARNNKIYTFDELNRMNYSDLVELIKTISYENVPDLFNFNDGSYTF 131

		

		Query: 131 GAAKD 135

		            + +D

		Sbjct: 132 FSNRD 136

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 38.2 bits (88), Expect = 3e-05

		 Identities = 19/37 (51%), Positives = 20/37 (54%)

		

		Query: 219 IGRGGGGGGGGGGGGGGGGGGGGGGGGGVARLAQLAL 255

		           I  GGG G G GGG G  GGG G GG   A  A +A 

		Sbjct: 54  IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90

		

		

		

		 Score = 34.3 bits (78), Expect = 4e-04

		 Identities = 18/37 (48%), Positives = 20/37 (54%)

		

		Query: 220 GRGGGGGGGGGGGGGGGGGGGGGGGGGVARLAQLALP 256

		           G G   GGG G G GGG G  GGG G    L+ +A P

		Sbjct: 51  GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAP 87

		

		

		

		 Score = 32.4 bits (73), Expect = 0.002

		 Identities = 16/29 (55%), Positives = 16/29 (55%)

		

		Query: 218 PIGRGGGGGGGGGGGGGGGGGGGGGGGGG 246

		           P G G G G   GGG G G GGG G  GG

		Sbjct: 45  PWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73

		

		

		

		 Score = 32.0 bits (72), Expect = 0.002

		 Identities = 16/32 (50%), Positives = 16/32 (50%)

		

		Query: 215 PIGPIGRGGGGGGGGGGGGGGGGGGGGGGGGG 246

		           P G     G   GGG G G GGG G  GGG G

		Sbjct: 45  PWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76

		

		

		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score = 29.8 bits (67), Expect = 0.005

		 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

		

		Query: 29  RQQAQQLARRIRDRELVFDVVYASPLDRALET--AAIVATELGLAEPIVHDDLIERNFGI 86

		            ++  +LA  I+ +  VF+ +     DR+++     I   EL  A   V   + E+ F  

		Sbjct: 230 EEEDPELAEEIKKKMFVFEDIVLLD-DRSIQRVLREIDGQELAKALKSVDIPVQEKIFKN 288

		

		Query: 87  MTGRPAADVEE 97

		           M+ R A+ ++E

		Sbjct: 289 MSKRAASMLKE 299

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 31.7 bits (72), Expect = 0.003

		 Identities = 11/29 (37%), Positives = 15/29 (51%)

		

		Query: 6  TVLVAGATGYLGRFVVAELHRRGYKVRAI 34

		            LV GA G++G  V   L   G++V  I

		Sbjct: 2  KYLVTGAAGFIGFHVSKRLLEAGHQVVGI 30

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 44.3 bits (104), Expect = 2e-06

		 Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 25/195 (12%)

		

		Query: 753  APAFSAKTLNL----PPAQDDNTGRIIQHTRENYARNRQEIEEDISKRILPPENLVVKRP 808

		            APA  ++T          +     +  Q   E  A+NR+  +E  S      +   V + 

		Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088

		

		Query: 809  G-----PAYTPPKSPEQREAERRAKEAAILAQGKTWPISNVTPDEVNIALKEARDQKKQP 863

		            G        T  K     E E +AK      Q      S V+P       K+ + +  QP

		Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP-------KQEQSETVQP 1141

		

		Query: 864  STEPKT-------SDQPDAPINNSNNVTEKPKKKRTRTRKRKPSGSSDTQQEPNRPRIIR 916

		              EP           +P +   N+   TE+P  K T +   +P   S T    N      

		Sbjct: 1142 QAEPARENDPTVNIKEPQSQ-TNTTADTEQP-AKETSSNVEQPVTESTTVNTGNSVVENP 1199

		

		Query: 917  ESSVNDGKPSSNNPE 931

		            E++       + N E

		Sbjct: 1200 ENTTPATTQPTVNSE 1214

		

		

		

		 Score = 31.6 bits (71), Expect = 0.021

		 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

		

		Query: 794  SKRILPPENLVVKRPGPAYTPPKSPEQREAERRAKEAAILAQGKTWPISNVTPDEVNIAL 853

		            ++ I   +   V  P PA TP ++ E      + +      +      +  T     +A 

		Sbjct: 1014 NEEIARVDEAPVPPPAPA-TPSETTETVAENSKQESKT--VEKNEQDATETTAQNREVAK 1070

		

		Query: 854  KEARDQKKQPSTEPKTSDQPDAPINNSNNVTEKPKKKRTRTRKRKPSGSSDTQQEPNRPR 913

		            +   + K    T        +         T + K+  T  ++ K    ++  QE   P+

		Sbjct: 1071 EAKSNVKANTQTNEVAQSGSET----KETQTTETKETATVEKEEKAKVETEKTQE--VPK 1124

		

		Query: 914  IIRESSVNDGKPSSNNP------ENDPTIL 937

		            +  + S    +  +  P      ENDPT+ 

		Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVN 1154

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 83.0 bits (205), Expect = 2e-19

		 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

		

		Query: 2   TKILLVEDDKSLREIYGVRLLAEGYDIVSAGDGEEALAMAIKDRPDLILSDVMMPKISGF 61

		             IL+ +DD ++R +    L   GYD+    +             DL+++DV+MP  + F

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 62  DMLDILRSTTETKNIKVIMMTALSSEEQRQRGVALGADRYLVKSQVGIEDVVRTVHEVLS 121

		           D+L  ++      ++ V++M+A ++     +    GA  YL K    + +++  +   L+

		Sbjct: 64  DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP-FDLTELIGIIGRALA 120

		

		Query: 122 DAPVSGQKPLVSPRPAAP 139

		           +      K     +   P

		Sbjct: 121 EPKRRPSKLEDDSQDGMP 138

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 42.5 bits (100), Expect = 3e-06

		 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 27/109 (24%)

		

		Query: 454 VVQNLVENAIKY-----TPEGEVSVDVTGDHSHIVISIADTGIGIPHEDQSHLFQKFYRV 508

		           +VQ LVEN IK+        G++ +  T D+  + + + +TG       +          

		Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------- 309

		

		Query: 509 DNSDTREIGGTGLGLY-LCRRLTETIGG--RIWVESEYKHGSTFFVEIP 554

		                     TG GL  +  RL    G   +I +  + +      V IP

		Sbjct: 310 ---------STGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 29.0 bits (65), Expect = 0.046

		 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

		

		Query: 13  SLDEIVGQS----HITDMLKRAIASDNIAHAYLLTGPRGVGKTSIARILAHE 60

		               +VG+S     I  +L R + +D      ++TG  G GK  +AR L H+

		Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDL---TLMITGESGTGKELVARAL-HD 182

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 29.0 bits (65), Expect = 0.032

		 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

		

		Query: 51 RPVFVLILAIFMTALGAFVGIVVYKAYFERPATEAPVVAP 90

		          RP+F  +LAI +   GA        A  + P  + P +AP

		Sbjct: 8  RPIFAWVLAIILMMAGAL-------AILQLPVAQYPTIAP 40

		

		

		>PilS_PF08805#PilS N terminal

		          Length = 185

		

		 Score = 28.7 bits (64), Expect = 0.027

		 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

		

		Query: 45  KHAYHPKRMMIVLSSIVAVSLIAVAIMLIYALSPTQQNKKTNGSDQSNKSTPQKDALTAK 104

		           +      +   ++  ++ V +I V     Y L    Q+   + ++Q+N  T     +   

		Sbjct: 19  RRKKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLT----VIANM 74

		

		Query: 105 QTVKNVAIY 113

		           +++K    Y

		Sbjct: 75  KSLKFQGRY 83

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 30.8 bits (69), Expect = 0.004

		 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

		

		Query: 38  GSSGAGKSTLLGLLAGLDTPTDGQILF-DDQDIAEQ 72

		           G+ G GKSTL+  L GLD  +D        +D  EQ

		Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQ 638

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 32.9 bits (75), Expect = 0.002

		 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 53/220 (24%)

		

		Query: 235 LEHENKRITQLEKEKIAFLRAASHELKTPLAALRIMLENMQLN----------IGEYKNR 284

		           L          ++ +I   + AS   +  L AL+      Q+N          I      

		Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALK-----AQINPHFMFNALNNIRALILE 188

		

		Query: 285 DQYLAESVAQVDRLAAMVNDVLRSGSVAEQALRQEKRLRIDKLLAEVVDDYMLLAKTR-- 342

		           D   A  +  +  L+ ++   LR  +  + +L  E           VVD Y+ LA  +  

		Sbjct: 189 DPTKAREM--LTSLSELMRYSLRYSNARQVSLADEL---------TVVDSYLQLASIQFE 237

		

		Query: 343 -GMTFEVNAEPTTIRANRDMMRHVISNLVSNAVRHG----DTGSVIAIT--CDQRELAIE 395

		             + FE    P  +     +   ++  LV N ++HG      G  I +    D   + +E

		Sbjct: 238 DRLQFENQINPAIMDVQ--VPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295

		

		Query: 396 NACKPLAKQQLQHVFDPFYRSSGSTKQRADSSGIGLYTVK 435

		                        V +     S + K   +S+G GL  V+

		Sbjct: 296 -------------VENT---GSLALKNTKESTGTGLQNVR 319

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 84.1 bits (208), Expect = 4e-21

		 Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

		

		Query: 2   IVEDEPALRSGTEQFLRQRGFTVVTATSGEEALKKFTEA--DVIILDIMLPGVSGIETLH 59

		           + +D+ A+R+   Q L + G+ V   ++     +       D+++ D+++P  +  + L 

		Sbjct: 8   VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67

		

		Query: 60  QIRQA-SDVPVLMLTALHDEPTQIASFDELADDYMSKPFSL-VILEKRIRALLRRQQSVK 117

		           +I++A  D+PVL+++A +   T I + ++ A DY+ KPF L  ++    RAL   ++   

		Sbjct: 68  RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPS 127

		

		Query: 118 K 118

		           K

		Sbjct: 128 K 128

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 30.2 bits (68), Expect = 0.008

		 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

		

		Query: 20  WFVAMAIAVAVTVPLQIAIGLPFELYALVTLAPFIAYLATIPLRHWRPSR-WQTVSAARW 78

		           W V                               +  + T   R +   + W  ++  + 

		Sbjct: 20  WGVYTLTGFGFASLYGS---PKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQI 76

		

		Query: 79  AMSIISACLTIGVV--------GLLFVAIGYKP-HWQLPTAGASIGVFLLLQIFGAFT 127

		            + ++ AC+ IG+V          L   I  KP  + LP A + I  F ++ +   ++

		Sbjct: 77  ILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII--FNVVVVTFMWS 132

		

		

		>PF04183#IucA / IucC family

		          Length = 580

		

		 Score = 83.8 bits (207), Expect = 1e-19

		 Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 23/201 (11%)

		

		Query: 112 PTSSTRTLLTYDQPYTFMVKTDLEKRHYKFIRRLKGTSVEHSIAMSSELGSIC-KDEALS 170

		              S RTL    +     +K  L   +    R + G  +      S  L  +   D  L 

		Sbjct: 254 AQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLV 313

		

		Query: 171 E--FAYLPESIGIIFGDE------------KTGAGVLFREIVPRPLVDDTRTLVPYFSLY 216

		           +     L E        E            +   GV++RE   R L  D  + V   +L 

		Sbjct: 314 QSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLKPD-ESPVLMATLM 372

		

		Query: 217 ANDIRNPEDRALLSQLIDLHSTKGQELAYFTEVILGKIIRNWTTLARDYGILPELHGQNT 276

		             D     ++ L    ID      +    +   +   ++     L   YG+    HGQN 

		Sbjct: 373 ECD---ENNQPLAGAYIDRSGLDAET---WLTQLFRVVVVPLYHLLCRYGVALIAHGQNI 426

		

		Query: 277 LLELNDNLEPERIVYRDFQGT 297

		            L + + + P+R++ +DFQG 

		Sbjct: 427 TLAMKEGV-PQRVLLKDFQGD 446

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 45.2 bits (107), Expect = 2e-07

		 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

		

		Query: 123 EIREPWIDGEIVVPQDYIGAVIQLIVAKRGRQKNLSYIDERALISFTAPLANLLTDFYDQ 182

		           E+ EP++  +I  PQ+Y+               +    +   ++S   P A  + ++   

		Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIP-ARCIQEYRSD 592

		

		Query: 183 LKSVTSGYGSFNYELAGYQP 202

		           L   T+G      EL GY  

		Sbjct: 593 LTFFTNGRSVCLTELKGYHV 612

		

		

		

		 Score = 38.7 bits (90), Expect = 3e-05

		 Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

		

		Query: 26  PVSNEDYNDLKEAIEKLSLSDSALQFE--PENSPVLGYGVRIGFLGLLHMDIIRERLERE 83

		           P   +    L +A+ ++S SD  L++        ++     + FLG + M++    L+ +

		Sbjct: 352 PSKPQQREMLLDALLEISDSDPLLRYYVDSATHEII-----LSFLGKVQMEVTCALLQEK 406

		

		Query: 84  YNLDLIVTNPSTDY 97

		           Y++++ +  P+  Y

		Sbjct: 407 YHVEIEIKEPTVIY 420

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 33.7 bits (77), Expect = 0.001

		 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 25/108 (23%)

		

		Query: 227 ILAILVDNAVKY---VPSKVGKINLCVRSRKNTLEFIVKDNGPGIASADQKHIFERFYQA 283

		           ++  LV+N +K+      + GKI L       T+   V++ G       ++         

		Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------- 309

		

		Query: 284 DTARTRTDVSGHGLGLA-IAKSLADRCG--YTIHVKSRLSAGAEFVLI 328

		                       G GL  + + L    G    I +  +       VLI

		Sbjct: 310 ----------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 91.4 bits (227), Expect = 2e-23

		 Identities = 32/127 (25%), Positives = 64/127 (50%)

		

		Query: 2   RILLVEDDVAIAQSLKEGLEDEAYAVDVAHDGDEGYRTATADDYDVIILDVMLPEMNGYE 61

		            IL+ +DD AI   L + L    Y V +  +    +R   A D D+++ DV++P+ N ++

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 62  VCRALRQDGNQTPILMLTARDAERDIVEGLDMGADDYLAKPFSFEVLLARLRALLRRPNE 121

		           +   +++     P+L+++A++     ++  + GA DYL KPF    L+  +   L  P  

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 122 KLEEVLR 128

		           +  ++  

		Sbjct: 125 RPSKLED 131

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 60.0 bits (145), Expect = 1e-13

		 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

		

		Query: 1  MDKRQALKTAAYDVFSKKGYKETGISEIAKRAGVAVGSFYNYYDGKETIFLDVYIEENNR 60

		           + RQ +   A  +FS++G   T + EIAK AGV  G+ Y ++  K  +F +++    + 

		Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69

		

		Query: 61 VRQAMMDNIDWQ-QDLVELVRQIFE 84

		          + +  ++       D + ++R+I  

		Sbjct: 70 IGELELEYQAKFPGDPLSVLREILI 94

		

		

		>BCTERIALGSPF#Bacterial general secretion pathway protein F

		           signature.

		          Length = 408

		

		 Score =  307 bits (789), Expect = e-104

		 Identities = 125/403 (31%), Positives = 216/403 (53%), Gaps = 7/403 (1%)

		

		Query: 1   MKKFTYEARDKSSNETVKSMVQADSESSAAKVLIEQGLMPLDIREINEDA------SFFN 54

		           M ++ Y+A D +  +  +   +ADS   A ++L E+GL+PL + E   D           

		Sbjct: 1   MAQYHYQALD-AQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSL 59

		

		Query: 55  RLTNRITTKDKVVFLRQMATLIGAGLPLAQSLHTVLEQTANKKMQQVVEEIIAEVEGGHT 114

		           R   R++T D  +  RQ+ATL+ A +PL ++L  V +Q+    + Q++  + ++V  GH+

		Sbjct: 60  RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

		

		Query: 115 LSDSFGKHPDVFDKVVLALVAAGETSGTLDEALKRVAAQKEKDAAMMSKIRGAMVYPMIV 174

		           L+D+    P  F+++  A+VAAGETSG LD  L R+A   E+   M S+I+ AM+YP ++

		Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179

		

		Query: 175 LLVIVGVMIFMLIAVVPQVDKLYKDMHKTLPMLTQVMISVAGFLISYWWAVIIGLGIGGY 234

		            +V + V+  +L  VVP+V + +  M + LP+ T+V++ ++  + ++   +++ L  G  

		Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239

		

		Query: 235 FLRQYLKTEPGIKLKDTVKLNIPLFNGMFRKLYMARFTRTGQTLLSTGVAMLDMMRISSE 294

		             R  L+ E          L++PL   + R L  AR+ RT   L ++ V +L  MRIS +

		Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299

		

		Query: 295 SVNNTIISKSIDRAAEKVKGGKALSVALKPEDYILPMVPQMIKIGEQSGKIDEMMGKTAQ 354

		            ++N      +  A + V+ G +L  AL+      PM+  MI  GE+SG++D M+ + A 

		Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359

		

		Query: 355 VYEDELDEEIKAISTAIEPVLMVVLAVFAGGMVGAILFPIYSL 397

		             + E   ++       EP+L+V +A     +V AIL PI  L

		Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQL 402

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 35.3 bits (81), Expect = 3e-05

		 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

		

		Query: 6  LKQKGFTIIEVVLVLAIAALIFLMVFIALPALQRNQRDAARKQELQ 51

		          ++Q+GFT++E++L+L +  +   MV +A PA  R+   A      +

		Sbjct: 1  MRQRGFTLLEMMLILLLMGVSAGMVLLAFPA-SRDDSAAQTLARFE 45

		

		

		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

		           signature.

		          Length = 290

		

		 Score =  109 bits (274), Expect = 3e-30

		 Identities = 73/282 (25%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

		

		Query: 7   IVLVVLGSLFGSFACAQVWRLRARQLEVDRRDGEVVDESEYQRLKGLLRPVSRDRSECLY 66

		            ++ +   + GSF    + RL        + +       + + +      +   RS C +

		Sbjct: 17  SLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPH 76

		

		Query: 67  CHHQLTWYDLLPILGWILVGGKCRYCRKPIGVAELLAEVGLAAAFVLSFFYWPYKFLTVA 126

		           C+H +T  + +P+L W+ + G+CR C+ PI     L E+  A   V         + T+A

		Sbjct: 77  CNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLA 136

		

		Query: 127 DVGLFSIWLIALVFMTILLIYDAKWSLLPFSLNISLIVVGAVFFCI---TSLQHGINIMS 183

		            + L    L+AL F       D    LLP  L + L+  G +F  +    SL     ++ 

		Sbjct: 137 ALLLTW-VLVALTF------IDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDA--VIG 187

		

		Query: 184 AGGGLLLLSGLYLLFSLF---GWVGVGDGILGFGLALFLGKWELAFLTLFLANVLGCCMM 240

		           A  G L+L  LY  F L      +G GD  L   L  +LG W+   + L L++++G  M 

		Sbjct: 188 AMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLG-WQALPIVLLLSSLVGAFMG 246

		

		Query: 241 IPLMAAKRIGRHARVPFGPFLIVATFIVMMWGNGVINWFFHT 282

		           I L+  +   +   +PFGP+L +A +I ++WG+ +  W+   

		Sbjct: 247 IGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLTN 288

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 39.5 bits (92), Expect = 3e-06

		 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

		

		Query: 6  RGFTIIETMLVLAITGLVVAVVLVNIGTALRNEQYHTAVDQVHDYFQGQYSLTSAILNDR 65

		          RGFT++E ML+L + G+   +VL+    +  +     A        Q ++     +   +

		Sbjct: 4  RGFTLLEMMLILLLMGVSAGMVLLAFPASRDD---SAAQTLARFEAQLRFVQQRGLQTGQ 60

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 27.6 bits (61), Expect = 0.021

		 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

		

		Query: 5  QRGDTIIEMMLAFAIFTLAAVGAMSILSSGVAITQRNLES 44

		          QRG T++EMML   +  ++A   M +L+   +      ++

		Sbjct: 3  QRGFTLLEMMLILLLMGVSAG--MVLLAFPASRDDSAAQT 40

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 35.8 bits (82), Expect = 2e-04

		 Identities = 17/41 (41%), Positives = 21/41 (51%)

		

		Query: 271 PSWWAGGTHFGGGSSSGGSSGGFGGGSFGGGGFSGGGASGS 311

		             W +    +GGGS SG   GG  G   GGG  + GG SG+

		Sbjct: 37  SGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77

		

		

		

		 Score = 31.2 bits (70), Expect = 0.005

		 Identities = 13/38 (34%), Positives = 15/38 (39%)

		

		Query: 274 WAGGTHFGGGSSSGGSSGGFGGGSFGGGGFSGGGASGS 311

		           W GG+  G     G   G  GG    GGG   GG   +

		Sbjct: 46  WGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 50.4 bits (120), Expect = 8e-09

		 Identities = 32/203 (15%), Positives = 72/203 (35%), Gaps = 6/203 (2%)

		

		Query: 37  SQAFADRWDDQMRALNAQMQQYQSQASALNAQANTLQAQLDQITAQKNAILAQIDLSQKQ 96

		           +  F+     +++ L A+     ++ + L              +A+   + A+    + +

		Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191

		

		Query: 97  YDALQKQIEETKQKIDDNKEALGRIIADMYVDGSITPLEMLASSKNIGDYVDQQEYRNSI 156

		              L+K +E        +   +  + A+     +       A    +           ++

		Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251

		

		Query: 157 QNTLSDTIDQINSLKKKLESKQNEVKKVLDQQKDQKAQLAAKEAEQAELVAKTRNDEAAY 216

		           +   +    +   L+K LE   N       + K  +A+ AA EAE+A+L  +++   A  

		Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311

		

		Query: 217 QQMAND------AKAQVENAAAQ 233

		           Q +  D      AK Q+E    +

		Sbjct: 312 QSLRRDLDASREAKKQLEAEHQK 334

		

		

		

		 Score = 46.2 bits (109), Expect = 2e-07

		 Identities = 31/192 (16%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

		

		Query: 45  DDQMRALNAQMQQYQSQASALNAQANTLQAQLDQITAQKNAILAQIDLSQKQYDALQKQI 104

		           + +   L   ++   + ++A +A+  TL+A+   + A+K  +   ++ +     A   +I

		Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 248

		

		Query: 105 EETKQKIDDNKEALGRIIADMYVDGSITPLEMLASSKN--IGDYVDQQEYRNSIQNTLSD 162

		           +  + +    +                  LE               + +   + +  L  

		Sbjct: 249 KTLEAEKAALEARQAE-------------LEKALEGAMNFSTADSAKIKTLEAEKAALEA 295

		

		Query: 163 TIDQINSLKKKLESKQNEVKKVLDQQKDQKAQLAAKEAEQAELVAKTRNDEAAYQQMAND 222

		               +    + L + +  +++ LD  ++ K QL   EAE  +L  + +  EA+ Q +  D

		Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKKQL---EAEHQKLEEQNKISEASRQSLRRD 352

		

		Query: 223 ------AKAQVE 228

		                 AK Q+E

		Sbjct: 353 LDASREAKKQLE 364

		

		

		

		 Score = 32.0 bits (72), Expect = 0.005

		 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 13/167 (7%)

		

		Query: 45  DDQMRALNAQMQQYQSQASALNAQANTLQAQLDQITAQKNAILAQIDLSQKQYDA---LQ 101

		           +  +           ++   L A+   L+A+   +  Q   + A     ++  DA    +

		Sbjct: 266 EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAK 325

		

		Query: 102 KQIEETKQKIDDNKEALGRIIADMYVDGSITPLEMLASSKNIGDYVDQQEYRNSIQNTLS 161

		           KQ+E   QK+++  +        +  D        L +S+     ++ +  +   QN +S

		Sbjct: 326 KQLEAEHQKLEEQNKISEASRQSLRRD--------LDASREAKKQLEAEHQKLEEQNKIS 377

		

		Query: 162 DTIDQINSLKKKLESKQNEVKKVLDQQKDQKAQLAAKEAEQAELVAK 208

		           +   Q  SL++ L++ +   K+V    ++  ++LAA E    EL   

		Sbjct: 378 EASRQ--SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEES 422

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 77.6 bits (191), Expect = 6e-20

		 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

		

		Query: 3   ITKKKILLVEDDIALAAVYRSRLELEGFEIHEVNNGEDALSAAVSFKPDLILLDAMMPKI 62

		           +T   IL+ +DD A+  V    L   G+++   +N         +   DL++ D +MP  

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 63  SGFDVLDILRNTPETTNIRVIMLTALSQPKDKERAEQLGVDDYLVKSQVVIGDVVARVKH 122

		           + FD+L  ++      ++ V++++A +      +A + G  DYL K    + +++  +  

		Sbjct: 61  NAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP-FDLTELIGIIGR 117

		

		Query: 123 HLGL 126

		            L  

		Sbjct: 118 ALAE 121

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 28.3 bits (63), Expect = 0.004

		 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

		

		Query: 3   KVKAGGSSKNIHNNAGARLG---VKRFGGQKVSAGEVLVR 39

		           K+   G SK I     + +    VK   G+ V  G+VL++

		Sbjct: 89  KLTHSGRSKEIKPIENSIVKEIIVKE--GESVRKGDVLLK 126

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 88.8 bits (220), Expect = 3e-21

		 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

		

		Query: 11  INVGTMGHVDHGKTTLTAAI--SHVLSKKLPSDVNVPRDYDTIDNAPEEKARGITIASSH 68

		           IN+G + HVD GKTTLT ++  +     +L S   V +     DN   E+ RGITI +  

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGS---VDKGTTRTDNTLLERQRGITIQTGI 60

		

		Query: 69  IEYESANRHYAHVDMPGHADYVKNMITGAAQIDGAVLVVAANDGPLPQTREHVLLAKQVG 128

		             ++  N     +D PGH D++  +    + +DGA+L+++A DG   QTR      +++G

		Sbjct: 61  TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120

		

		Query: 129 VPKIVVFLNKMDLADPELVELVEMDVRELLTKNG------YDGDNAPIIKGSATKALEGD 182

		           +P I  F+NK+D    +L   V  D++E L+             N  +   + ++  +  

		Sbjct: 121 IPTI-FFINKIDQNGIDL-STVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTV 178

		

		Query: 183 AAAEDAIMD 191

		               D +++

		Sbjct: 179 IEGNDDLLE 187

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  124 bits (313), Expect = 2e-35

		 Identities = 72/330 (21%), Positives = 133/330 (40%), Gaps = 36/330 (10%)

		

		Query: 1   MKVLIFGGAGYVGYELVKCFLGNGDTVAIYDAFCNG-DAS-AHDKVSALGS--VTVFEGT 56

		           MK L+ G AG++G+ + K  L  G  V   D   +  D S    ++  L        +  

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 57  IADKKAVRRAIEEFCPDVVYNLAALHYIPYCIQHPDEVYETNYQGLQNIIQVLRDYPQTK 116

		           +AD++ +         + V+       + Y +++P    ++N  G  NI++  R      

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

		

		Query: 117 FIFASSASVYGSPDQ-QCTLDTPVD-PNDIYGASKLAGEGLIKYQLSN-----FVIMRLF 169

		            ++ASS+SVYG   +   + D  VD P  +Y A+K A E L+ +  S+        +R F

		Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPATGLRFF 179

		

		Query: 170 NVYGSLDPHPHLIPKVARAAVRGEDLDL-GAMEAKRDFVHVTDVAQAFF----------- 217

		            VYG        + K  +A + G+ +D+    + KRDF ++ D+A+A             

		Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239

		

		Query: 218 --------VARNGCPGDTYIVATGETHSVKEVVDKIYQLSGSLGKVTYGTVGNMRAKDAS 269

		                    A +  P   Y +       + + +  +    G   K        ++  D  

		Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM---LPLQPGDVL 296

		

		Query: 270 CLSGDYSALR-ALGWAPMVQFDEGLRSAID 298

		             S D  AL   +G+ P     +G+++ ++

		Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVN 326

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 41.5 bits (97), Expect = 4e-07

		 Identities = 14/58 (24%), Positives = 30/58 (51%)

		

		Query: 9  RQDGFTIVEIFITMAVIVILASVAIVGYNGLRDRTADADRATTAGQLKKLIQDAVVNN 66

		          RQ GFT++E+ + + ++ + A + ++ +   RD +A    A    QL+ + Q  +   

		Sbjct: 2  RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTG 59

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score =  554 bits (1429), Expect = 0.0

		 Identities = 177/689 (25%), Positives = 303/689 (43%), Gaps = 72/689 (10%)

		

		Query: 12  RNVGIIAHIDAGKTTTTEGILYRTGINHKIGEVKGDGDGATTDWMAQEKERGITITSAAV 71

		            N+G++AH+DAGKTT TE +LY +G   ++G V  D     TD    E++RGITI +   

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSV--DKGTTRTDNTLLERQRGITIQTGIT 61

		

		Query: 72  TCFWKGHKINIIDTPGHIDFTAEVERSLRVLDGAVTVFDGKMGVEAQSETVWRQANKYGV 131

		           +  W+  K+NIIDTPGH+DF AEV RSL VLDGA+ +   K GV+AQ+  ++    K G+

		Sbjct: 62  SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121

		

		Query: 132 PRICFVNKINQTGGDFYKSLESIRTRLSKQAFPIHLPIGFEKDICGVVDLIDMKAYTYDY 191

		           P I F+NKI+Q G D     + I+ +LS +       +    ++C V +  + + +    

		Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ-KVELYPNMC-VTNFTESEQW---- 175

		

		Query: 192 FTDHELKVGEIPADMLEKAKNARSLLVENAVEADEDLMMKFFDEGEESITVDELKSALRK 251

		                                      +  +E ++DL+ K+     +S+   EL+     

		Sbjct: 176 ---------------------------DTVIEGNDDLLEKYMS--GKSLEALELEQEESI 206

		

		Query: 252 RVLAGDFYLVTGGDGRGVI-VEKVLDLITDYLPSPLDIDEIWGKNPKTGDEVSRKPDEKE 310

		           R      + V  G  +  I ++ ++++IT+   S                        + 

		Sbjct: 207 RFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQS 247

		

		Query: 311 PMAALAFKIAADPFVGKLIFIRVYSGVLTAGSYVLNTTTGEKERIGRIVRMHADKREDID 370

		            +    FKI       +L +IR+YSGVL     V  +   EK +I  +      +   ID

		Sbjct: 248 ELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK-EKIKITEMYTSINGELCKID 306

		

		Query: 371 KVGAGDIAAVVG--LK-NTFTGNTLAELAHPIALESIEFPDPPVSIAVEPKTKADQEKMG 427

		           K  +G+I  +    LK N+  G+T          E IE P P +   VEP     +E + 

		Sbjct: 307 KAYSGEIVILQNEFLKLNSVLGDTKLL----PQRERIENPLPLLQTTVEPSKPQQREMLL 362

		

		Query: 428 IALQRLAEEDPTFRIHTDEETGQTIMSGMGELHLEILIDRMKREFNVEANVGEPQVAFRE 487

		            AL  +++ DP  R + D  T + I+S +G++ +E+    ++ +++VE  + EP V + E

		Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422

		

		Query: 488 TIKGMAEAQGKHAKQSGGRGQYGDVWVRFEPNETGKGFEFIDEIKGGVVPQEYRPAVQKG 547

		                AE       +      +  + +   P   G G ++   +  G + Q ++ AV +G

		Sbjct: 423 RPLKKAEY--TIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480

		

		Query: 548 IKEVLDGGVIAGYPVVDVKATLYDGSYHDVDSSELAFSLAGGLAAREGIKKATPVLLEPV 607

		           I+   + G + G+ V D K     G Y+   S+   F +   +   + +KKA   LLEP 

		Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539

		

		Query: 608 MHVEVTTPEEFMGDIIGDLNSRRGRIEAMEDLMGGAKLVKAIVPLANMFGYTSDIRSMSQ 667

		           +  ++  P+E++     D       I   + L     ++   +P   +  Y SD+   + 

		Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTFFTN 598

		

		Query: 668 GRAASTMELAHYEEVPPNVAQEIIEKRSK 696

		           GR+    EL  Y        + + + R  

		Sbjct: 599 GRSVCLTELKGYH---VTTGEPVCQPRRP 624

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 28.7 bits (64), Expect = 0.036

		 Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

		

		Query: 219 GLAQNGFGSMLFWLFAIVVAVLVFYWATSTLIALVVVTLPGMYPLRALKASSDLVIGRRL 278

		           G+             +  +  ++F  A S +  ++          R+       +     

		Sbjct: 21  GVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTH------AYRSFIKRQGWLKLNMG 74

		

		Query: 279 RILYRWLWAALIIILAWMIVMIPVILLDTVIKSALPAIQNVPIVPYVGAFMSSATVVWFA 338

		           +I+ R L A ++I + W +    +  L   I +  P    +P+   +   +   T +W  

		Sbjct: 75  QIILRVLPACVVIGMVWFVANTSIWRLLAFINTK-PVAFTLPLALSIIFNVVVVTFMWSL 133

		

		Query: 339 SYVYLLYRR 347

		            Y    + +

		Sbjct: 134 LYFGWHFFK 142

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 37.6 bits (87), Expect = 2e-05

		 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

		

		Query: 96  IGPLIVSEEYREKLGIGSALLEYAEEFARGLGASRVYCTVAKPNQRALIFFLRKGFCVAG 155

		           I  + V+++YR+K G+G+ALL  A E+A+      +       N  A  F+ +  F +  

		Sbjct: 92  IEDIAVAKDYRKK-GVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150

		

		Query: 156 TAREQYK 162

		                Y 

		Sbjct: 151 VDTMLYS 157

		

		

		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score = 33.4 bits (76), Expect = 2e-05

		 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

		

		Query: 6  ILQIVSIVSAVLMIVAILLQQ-RGASLGAGFG-GSSELYTTRRGLDKNLFEVTIFLAVTF 63

		           L +V ++ A+ ++  I+LQQ +GA +GA FG G+S       G    +  +T  LA  F

		Sbjct: 4  ALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLF 63

		

		Query: 64 VLSILV 69

		           +  LV

		Sbjct: 64 FIISLV 69

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 47.2 bits (112), Expect = 9e-10

		 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

		

		Query: 1  MKRRQGFTIVEVIVVIVIIASLALLTVFAFGAWRKRTAKTEMRQEIMTVVSSLKSYQAFQ 60

		            +++GFT++E++VVIVII  LA L V      +++  K +   +I+ + ++L  Y+   

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63

		

		Query: 61 NKFPGT-PGGSAVSPRTISGLTYKPSAN 87

		          + +P T  G  +        L   P+  

		Sbjct: 64 HHYPTTNQGLES--------LVEAPTLP 83

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 69.9 bits (171), Expect = 3e-17

		 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

		

		Query: 2   TKIVIIEDDQVINQMYRMKFEAAGFDVATASDGQAGIKMAEKFKPEIILLDLQMPNMGGA 61

		             I++ +DD  I  +       AG+DV   S+     +       ++++ D+ MP+    

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 62  EALEIIRKSTWGAKIPVIILTNLGE-EEAPKLLRSLGIHSYIVK 104

		           + L  I+K      +PV++++       A K     G + Y+ K

		Sbjct: 64  DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASE-KGAYDYLPK 104

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 48.7 bits (116), Expect = 1e-09

		 Identities = 17/54 (31%), Positives = 32/54 (59%)

		

		Query: 1  MNARRGFTIVEIVIVMVIMAILIGLAVLNISSTQANARDNKRKTDVENIARGLE 54

		           + +RGFT++EI++V+VI+ +L  L V N+   +  A   K  +D+  +   L+

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 33.3 bits (76), Expect = 0.001

		 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

		

		Query: 11 IKRNRRHAGFTLVEMLAVAPIVLIVIGVLISAMVS-MIGDALVANARTVVA 60

		          ++   +  GFTL+E++    +V+++IGVL S +V  ++G+   A+ +  V+

		Sbjct: 1  MRATDKQRGFTLLEIM----VVIVIIGVLASLVVPNLMGNKEKADKQKAVS 47

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 52.6 bits (126), Expect = 1e-11

		 Identities = 21/78 (26%), Positives = 37/78 (47%)

		

		Query: 1  MTKQTKSSGFTIVELLIVIVVIAILAAITIVAYNGIQNRANDTAAKETASQFRTKIEAYN 60

		          M    K  GFT++E+++VIV+I +LA++ +    G + +A+   A          ++ Y 

		Sbjct: 1  MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60

		

		Query: 61 TIKSKYPATATTASALVT 78

		               YP T     +LV 

		Sbjct: 61 LDNHHYPTTNQGLESLVE 78