>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.002 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 2/195 (1%) Query: 55 KENEKISGLENANDQLWQAKDKLTKENTELTHKNAALTEKTAELKTENDKLNHLVIALNN 114 K + + L+ N L L N ELT + + EK + + + L Sbjct: 61 KFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEA 120 Query: 115 EQGSLKQERAQLQDERGFLEELCTNLEKENQHLTEKLKKLESAQKNLENTNNQLRQAKEK 174 + L++ + LE E L + LE A + N + + Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 175 IAEEKTELERKIARLKSLESMEAKSELDLHNRR--LASANQDLKRQNRKLEEENIALKER 232 + EK LE + A L+ + L + L + LE+ Sbjct: 181 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF 240 Query: 233 AYGLNEQLFTLQPQK 247 + + ++ TL+ +K Sbjct: 241 STADSAKIKTLEAEK 255 Score = 32.0 bits (72), Expect = 0.002 Identities = 40/238 (16%), Positives = 65/238 (27%), Gaps = 13/238 (5%) Query: 16 EELEARIGELENENAELFTTKEKLTKENTELAYKNNKLFKENE-----------KISGLE 64 + L+ EL E + K K +E A K +L + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 65 NANDQLWQAKDKLTKENTELTHKNAALTEKTAELKTENDKLNHLVIALNNEQGSLKQERA 124 L K L +L + + L AL Q L++ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 125 QLQDERGFLEELCTNLEKENQHLTEKLKKLESAQKNLENTNNQLRQAKEKIAEEKTELER 184 + LE E L + LE A + N + + + EK LE Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 185 KIARLKSLESMEAKSELDLHN--RRLASANQDLKRQNRKLEEENIALKERAYGLNEQL 240 + A L+ + L + L+ + LE ++ L L L Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318 Score = 31.6 bits (71), Expect = 0.003 Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 6/232 (2%) Query: 15 REELEARIGELENENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQA- 73 + +LE + N + + L E L + +L K E A+ + Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 74 ---KDKLTKENTELTHKNAALTEKTAELKTENDKLNHLVIALNNEQGSLKQERAQLQDER 130 K L +L + + L AL Q L++ + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 131 GFLEELCTNLEKENQHLTEKLKKLESAQKNLENTNNQLRQAKEKIAEEKTELERKIARLK 190 LE E L + LE + L LR+ + E K +LE + +L+ Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 191 SLESMEAKSELDLHNRRLAS--ANQDLKRQNRKLEEENIALKERAYGLNEQL 240 + S L AS A + L+ +++KLEE+N + L L Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 388 Score = 30.8 bits (69), Expect = 0.006 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 4/210 (1%) Query: 15 REELEARIGELENENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQAK 74 + +LE + N + + L E LA + L K E G N + Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE---GAMNFSTADSAKI 178 Query: 75 DKLTKENTELTHKNAALTEKTAELKTENDKLNHLVIALNNEQGSLKQERAQLQDERGFLE 134 L E L + A L + + + + L E+ +L +A L+ Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 135 ELCTNLEKENQHLTEKLKKLESAQKNLENTNNQLRQAKEKIAEEKTELERKIARLKSLES 194 T + + L + LE+ Q LE + + LE + A L++ E Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA-EK 297 Query: 195 MEAKSELDLHNRRLASANQDLKRQNRKLEE 224 + + + + N S +DL ++ Sbjct: 298 ADLEHQSQVLNANRQSLRRDLDASREAKKQ 327
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1041 bits (2694), Expect = 0.0 Identities = 352/569 (61%), Positives = 441/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNFGFLAKGNVSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MN F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNS 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+ Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 37.4 bits (86), Expect = 1e-04 Identities = 48/318 (15%), Positives = 108/318 (33%), Gaps = 23/318 (7%) Query: 42 GNYAEKDKDSKLTSDSLTQQQAQTQAQNTASSDSKEATTLENTAATDSQTATTDETYTKS 101 G+ +E T+ T Q +TQA+ A + + + A D+ T + ++ Sbjct: 42 GSKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKDIVNEA 101 Query: 102 TDATVADAAKQVE---TDNTAVQNDEKTLK----TDVAKVQADASTKDFDETTFTKDQAA 154 + E +N A+Q +++ L+ + A+ +A+A+ K F E + + Sbjct: 102 LRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIE 161 Query: 155 EQTAETNLQ-NAEEQLTNDQNALNTALKDQTPSTPSTPPATSGGASGSTVASQLTKDTTM 213 + AET Q E AL+ K + A S L + Sbjct: 162 REKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSS 221 Query: 214 VNNLKSVSVSAMNTTLSGVTQLSQQTATIGNLLNSSTDLSS-------VIPNAQGLSSAF 266 + + + + + + Q S + + L+ + ++ + A Sbjct: 222 SIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAG 281 Query: 267 SALESAQNTLKGYLNSSSATIGQLTNGSNAVVGALDKAINQVDMALADLSATDTQKTQAV 326 E Q + +S I ++ + A+ + N + +A + + + + Sbjct: 282 KIREEKQKQVT----ASETRINRINADITQIQKAISQVSNNRNAGIARVH----EAEENL 333 Query: 327 ALAAASDSATTTTDAINF 344 A + + DA++ Sbjct: 334 KKAQNNLLNSQIKDAVDA 351
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 31.9 bits (72), Expect = 0.008 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 490 GNNTGDTGDMNNTDTGNTDTGNTDDMSNMNSG---NDDAGNANDDMGNSNDM 538 GN D N +T NT+T T++ S + AG DDM NSNDM Sbjct: 27 GNLVTANADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDM 78
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.4 bits (65), Expect = 0.037 Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 376 HTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVAD 435 H++++ + K++Q D V LD IN + + +++ +E R + A Sbjct: 41 HSDQKDNKKLDQ----KDQVNQALDTINKVTED-----VSSKLEGVRESSLELVESNDAG 91 Query: 436 EVRNLAGRTQKSLAEINSTIMVIVQEINDVSSQMNLNSQKMERLSDMSK-SVQETYEKMS 494 V+ G + ++++ +V QE V+ + ++ ++ +MSK +VQET + +S Sbjct: 92 VVKKFVG-SMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVS 150 Query: 495 SNLSSVVSDSNQTMDDYAKSGHQIEAMVSDFAEVEKVASKTLA 537 + Q M + + + ++E +FA+VE+V +A Sbjct: 151 VAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMA 193
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 223 bits (570), Expect = 4e-78 Identities = 57/145 (39%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRVADRKKGANGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAK---EVPAS 120 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAQNLARTFLD 145 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 6e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKVLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.9 bits (67), Expect = 0.022 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 392 WVFGGGVHKKWLWGTLWRWTSGTLA-NEASAAVNVGYKISKSLTASVKLEYFGVMTHSG 449 W G + T + +G N+ A GY+++ + + ++ G M + G Sbjct: 28 WYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKG 86
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 27 KAEVVALL-GESGAGKSTILRILAGLEAVSSGYIEV 61 K + +L G G GKST++ L GL+ S + ++ Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 1e-57 Identities = 116/461 (25%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 301 bits (772), Expect = e-105 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 41/283 (14%) Query: 1 MERSLIFKKVRVYSKMLVALGLSSVLIGCAMNPSAETKKPNDAKNQVQTHERIQTSSEHV 60 M+ + FK + K L+ + ++L+GC S + N+ ++ H +SE V Sbjct: 1 MKANNHFKDF-AWKKCLLGASVVALLVGC----SPHIIETNEVALKLNYH----PASEKV 51 Query: 61 TPLDFNYPIHIVQAPQNHHVVGILMPRIQVSDNL-KPYIDKFQDALANQIQTIFEKRGYQ 119 LD + +L P Q SDN+ K Y +KF++ +++ I + +GY+ Sbjct: 52 QALD--------------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYK 97 Query: 120 VLRF--QDEKALSTQDKRKIFSVLDLKGWVGILEDLKMNVKDPNNPNL--DTLVDQ---- 171 V+ D+ S K++ + + + G + + D K ++ + P L T +D+ Sbjct: 98 VINVDSSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGV 157 Query: 172 --SSGSVWFNFYEPESNRVVHDFAVEVGTF---QAMTYTYKHSNSGGFDSSNSIIHENLE 226 +G V EP S + F +++ + T S+SGG S+ Sbjct: 158 LIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----KGT 213 Query: 227 KNKEDAIHKILNRMYAVVMKKAVTELTKENIAKYRDTIDRMKG 269 N DAI LN+++A +M++ +LT++N+ Y+ +KG Sbjct: 214 DNSNDAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>PF03944#delta endotoxin Length = 633 Score = 30.8 bits (69), Expect = 0.008 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDMA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYNSQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.020 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALKAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 7e-05 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 5/214 (2%) Query: 65 KARNEEERRACEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 124 + NEE R E + P A ++ + + ++KT + ++ T + ++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT---PSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 125 KLEEAKKSVKAYLDCVSQAKNEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRC 184 +EAK +VKA A++ +E KE + T E + +++ E K Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 185 VKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAY 244 + PK Q + + ++ A ++ + E + + T + K ++ V Sbjct: 1128 -QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 245 LDCVSQAKNEAEKKECEKLLTPEAKKKLEEAKKS 278 V+ + E E T + E + K Sbjct: 1187 -TTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Score = 38.1 bits (88), Expect = 3e-04 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 5/155 (3%) Query: 355 VSKARNEKEKKECEKLLTPEARKLLEEAKESLKAYKDCVSKARNEEERRACEKLLTPE-A 413 SK + E+ E T + R++ +EAK ++KA A++ E + + T E A Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 414 KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA 473 EE+AK + + + K+E + + P+A+ E + SQ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQT 1162 Query: 474 KTEADKKECEKLLTPEAKKLLEQQALDCLKNAKTE 508 T AD ++ K + ++ + + N+ E Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Score = 37.4 bits (86), Expect = 5e-04 Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 4/242 (1%) Query: 395 KARNEEERRACEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 454 + NEE R E + P A ++ + + ++KT + ++ T + ++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT---PSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 455 KLEEAKKSVKAYLDCVSQAKTEADKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRC 514 +EAK +VKA A++ ++ KE + T E + +++ E K Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 515 VKDLPKDLQKKVLAKKSVKAYLDCVSKARNEKEKKECEKLLTPEARKLLEEAKESLKAYK 574 + PK Q + + ++ A + + E + + T + K E Sbjct: 1128 -QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 575 DCVSKARNEKEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTP 634 V+ + E E T + E K + S N + + Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Query: 635 EA 636 A Sbjct: 1247 VA 1248 Score = 36.2 bits (83), Expect = 0.001 Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 36/239 (15%) Query: 25 VSKARNEKEKKECEKLLTPEARKLLEEAKESLKAYKDCVSKARNEEERRACEKLLTPEAK 84 SK + E+ E T + R++ +EAK ++KA A++ E + + T E Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 85 KLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK 144 + +EE +AK E EK + +T + K Q + Sbjct: 1105 TVEKEE-------------KAKVETEKTQEVPKVTSQVSPK----------------QEQ 1135 Query: 145 NEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKA 204 +E + + E + +++ A TE K ++ + + + Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG--- 1192 Query: 205 YKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKNEAEKKECEKL 263 + V + + + E+ + + SV++ V A + + L Sbjct: 1193 --NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.047 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 5/214 (2%) Query: 408 RKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLK--QQALDCLKNAKTDEER 465 E + QE K KN + E + ++KEA +K Q + ++ +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 466 NECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCL 525 ++KE A + + ++ KQE + + P+A E + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 526 KNAKTDEERKKCLKDLPKDLQSDI---LAKESVKAYKDCVSQAKTESEKKECEKLLTPEA 582 K ++ + K+ S++ + + + + V + + + + E+ Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 583 KKLLEEEAKESVKAYLDCVSQAKNEAEKKECEKL 616 + + SV++ V A + + L Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 880 bits (2274), Expect = 0.0 Identities = 514/522 (98%), Positives = 516/522 (98%) Query: 2 MGQAFFKKIVGCFCLGYLFLSSTIEAAALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 61 MGQAFFKKIVGCFCLGYLFLSS IEA ALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 62 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 121 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 122 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 181 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 182 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 241 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 242 EETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 301 EE ++QRAKDKISIKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 302 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 361 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 362 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 421 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 422 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNLGLRWYRVNEIAEKFKLIK 481 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTN GLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 482 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 523 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 29.5 bits (66), Expect = 0.013 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 12/72 (16%) Query: 48 DGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGF-------- 99 G L E + + L + ++ L++ L V++L+A Sbjct: 9 GSGRGL----EAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTK 64 Query: 100 KKDYRLYQRMER 111 K + R R Sbjct: 65 GKATVAFAREAR 76
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1895 bits (4909), Expect = 0.0 Identities = 1070/1200 (89%), Positives = 1103/1200 (91%), Gaps = 53/1200 (4%) Query: 1 MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVVSYDPDQKPIVDKNDRDNRQAFDG 60 MTNETI+QQPQTEAAFNPQQFINNLQVAFLKVDNAV SYDPDQKPIVDKNDRDNRQAF+G Sbjct: 1 MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG 60 Query: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF Sbjct: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 Query: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 TSWVSHQNDPSKINTRSIRNFMENIIQPPI DDKEKAEFLKSAKQSFAGIIIGNQIRTDQ Sbjct: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 Query: 181 KFMGVFDEFLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 KFMGVFDE LKERQEAEKNG PTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI Sbjct: 181 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 Query: 241 ATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 ATTTTDIQGLPPE+RDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS Sbjct: 241 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 Query: 301 SVLMGSHDGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQQGDNVATLINVHMKNGSGLV 360 SVLMGSH+GIEPEKVSLLYG NGGP ARHDWNATVGYK+QQG+NVAT+INVHMKNGSGLV Sbjct: 301 SVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 Query: 361 IAGGEKGVNNPSFYLYKEDQLTGLKQALSQEEIRNKVDFMEFLAQNNAKLDNLSEKEKEK 420 IAGGEKG+NNPSFYLYKEDQLTG ++ALSQEEI+NK+DFMEFLAQNNAKLDNLSEKEKEK Sbjct: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKEK 420 Query: 421 FQTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALLTEFGNGDLSYTLKDYGKKADKA 480 F+TEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSAL+TEFGNGDLSYTLKDYGKKADKA Sbjct: 421 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA 480 Query: 481 LDREKNVTLQGNLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEANLSKVAVFNL 540 LDREKNVTLQG+LKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLE +KVA+FNL Sbjct: 481 LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNL 540 Query: 541 PNLNNLAITSYVRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELVGKTLNFNKAVAEAKN 600 P+LNNLAITS+VRR+LEDKL KGLSPQEANKLIKDFL+SNKELVGKTLNFNKAVA+AKN Sbjct: 541 PDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKN 600 Query: 601 TGDYDEVKKAHKDLEKSLRKREHLEKEVAKKLESKSGNKNKMEAKSQANSQKDEIFALIN 660 TG+YDEVKKA KDLEKSLRKREHLEKEV KKLESKSGNKNKMEAK+QANSQKDEIFALIN Sbjct: 601 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALIN 660 Query: 661 KEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKTEETLK 720 KEANRDARAIAYAQNLKGIKRELSDKLEN+NK+LKDF KSFDEFKNGKNKDFSK EETLK Sbjct: 661 KEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLK 720 Query: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKI 780 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENS+KDVIINQK+ Sbjct: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV 780 Query: 781 TDKADNLNQAVSVAKTTGDFSRVEQALADLKNFSKGQLAQQAQKNEDFNTGKNSELYQSV 840 TDK DNLNQAVSVAK TGDFSRVEQALADLKNFSK QLAQQAQKNE N K SE+YQSV Sbjct: 781 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSV 840 Query: 841 KNGVNKTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNNGLKNEPIYAKVNKKK 900 KNGVN TLVGNGLS EAT L+KNFSDIKKELN K NFNNNNNNGLKNEPIYAKVNKKK Sbjct: 841 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKNEPIYAKVNKKK 900 Query: 901 TGQVASPEEPIYAKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAG 960 GQ AS EEPIYA QVAKKVNAKIDRLNQIASGLG VGQAAG Sbjct: 901 AGQAASLEEPIYA-------------------QVAKKVNAKIDRLNQIASGLGVVGQAAG 941 Query: 961 FPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSRNQELAQK 1020 FPLKRHDKVDDLSKVGLSRNQELAQK Sbjct: 942 ----------------------------------FPLKRHDKVDDLSKVGLSRNQELAQK 967 Query: 1021 IDNLNQAVSEAKAGFFGNLEQAIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNS 1080 IDNLNQAVSEAKAGFFGNLEQ IDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNS Sbjct: 968 IDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNS 1027 Query: 1081 HTRINSNIQNGAINEKVTGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDRIGFNQKNMK 1140 H RINSNI+NGAINEK TGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD+IGFNQKNMK Sbjct: 1028 HIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMK 1087 Query: 1141 DYSDSFKFSTKLNNAVKDIKSGFVQFLTNTFSTASYYCLAEENAKHGIKNANTKGGFQKS 1200 DYSDSFKFSTKLNNAVKD SGF QFLTN FSTASYYCLA ENA+HGIKN NTKGGFQKS Sbjct: 1088 DYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 28.7 bits (64), Expect = 0.008 Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 54 GKLIGGGVGGFVGDKIGGAIGAPGGPVGIGLGRFLG 89 G G GG D++ + + GG GI G LG Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 13/181 (7%) Query: 210 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 263 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 264 HMLNTPFPYAEEVKIKYGDLSFEGGTETPSQNVQIPTTGSDGHESHIVPLSEIQTIMRER 323 + AE +K + G S G E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 324 ALETFEIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 379 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 380 E 380 Sbjct: 323 T 323
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 9e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.003 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 72 EPEVQILKDLKPDFIVVVAYGKILPKEVLTIAP 104 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>PF01540#Adhesin lipoprotein Length = 475 Score = 32.0 bits (72), Expect = 0.010 Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 28/311 (9%) Query: 150 QKKIEDENSAETLIAKQESEIKKYNEEIEKIRKKVTS--RTIQITLDEIEINDFCKVSKN 207 Q+K++ N IA + +IK+ +E+ K+ +K+ S TI +T+ ++E F ++ + Sbjct: 106 QQKVDQANKK---IADENLKIKEGAKELLKLSEKIQSFADTIALTITKLEGKKF-QIDET 161 Query: 208 HFKYQEDTLMNLEKDFNELDE-----AIKKFDDLKEMELPKDYQTI-KDKLESLFSFDID 261 K T+ L K E+ IKK L E+E K++ T +K+ S + Sbjct: 162 FKKQLISTIELLNKKSAEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKK 221 Query: 262 KKAGQVSEKIKEHISKVGREF--IEKGIKLQKEMPNNACPFCTQKITNNIIQAYTSY--- 316 + +++E E K+ E I++G K ++ F I I + + Sbjct: 222 AWSKELAEIKAEDDKKLAEENQKIKEGAKELLKLSEKIQSF-ADTIALTITKLERKFQID 280 Query: 317 --FNKSIEQFNQDSLEISGTLKNILNQWNIKE--ILQSFERFEPFMEDFLKEKKS-LENA 371 F K + + + S +K IK+ +L E F+ F +L++ S E Sbjct: 281 EKFKKQLISTIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEV 340 Query: 372 LEQIKALLEELQKEVDKKEGVKNKEKFQETDKELLEIQENIQQHVDETRNILNQKKEQEE 431 + L E++ E DKK +N +K + +EL +I E +N+ + E Sbjct: 341 KKAWSKELAEIKAEDDKKLAEEN-QKIKNGVEELKKINNEAF----ELSKTVNKTIAELE 395 Query: 432 KLKKLKTKLKE 442 K K+ KE Sbjct: 396 KKFKIDVSFKE 406
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYQSHFKALEQKEEALKERAKEQQAKFDEAVKHASVLALQDERAKIIEEARKNAFLEQ 110 + Q+ + QKE L ++ E+ ++ ++ ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170 LE + + E EL ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 427 bits (1099), Expect = e-146 Identities = 163/569 (28%), Positives = 272/569 (47%), Gaps = 57/569 (10%) Query: 10 RLILAIALSFLFIAIYSYFFQKPNKTTTQTTKQETTNNHTATSPNAPNAQHFSVTQTIPQ 69 R +L IAL F+ I+ Q T T+ A + Q Sbjct: 5 RNLLVIALLFVSFMIW-------QAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQ 57 Query: 70 ENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVGHLFSPKANPQNLL 127 L+ ++ + + I++ G + + K L Q L F +A Sbjct: 58 GKLI-SVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 128 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGTLTIIK 185 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 186 TLTFYDDLHYDLQIAFKSPN--------NIIPSYVITNGYRPVADLDS-----YTFSGVL 232 T Y + + + N + + P D S +TF G Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAA 222 Query: 233 LENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 289 D+K EK + D + + S +++ + +YF T + G + +G Sbjct: 223 YSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG- 280 Query: 290 KNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKG 338 N + I K++ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 -NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQP 339 Query: 339 VFVLLDYLYQFVGNWGWAIIFLTIIVRLILYPLSYKGMVSMQKLKELSPKMKELQEKYKG 398 +F LL +++ FVGNWG++II +T IVR I+YPL+ SM K++ L PK++ ++E+ Sbjct: 340 LFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGD 399 Query: 399 EPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLS 458 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS Sbjct: 400 DKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLS 459 Query: 459 IMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAGLVLYWTT 518 DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+GLVLY+ Sbjct: 460 AQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIV 519 Query: 519 NNILSVLQQLIINKVLENKKRMHAQNKKE 547 +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 520 SNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.043 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 54 AGVKESVKEVKEESVKETNTKENHQNHQNNMEEKKQKLETETPQEE--IITPKPPKKNPK 111 A KE + KET T E +E+K K+ETE QE + + PK+ Sbjct: 1086 AQSGSETKETQTTETKETATVE---------KEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 112 EE 113 E Sbjct: 1137 ET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.1 bits (73), Expect = 0.005 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 227 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 269 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 270 KGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALN 329 + KV +IDT G + ++ R SL L D + + ++ + + AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 330 RAKKPCIVVLNKND 343 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 33.0 bits (75), Expect = 0.001 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 297 PLIFMMGFVWPFESLPSYLQVFVQIVPAYHGISLLGRLNQMHAEFIDVSVHFYALIAIFI 356 P++F+ G V+P + LP Q + +P H I L+ R + +DV H AL + Sbjct: 188 PILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLI-RPIMLGHPVVDVCQHVGALCIYIV 246 Query: 357 VSF 359 + F Sbjct: 247 IPF 249
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 5e-78 Identities = 63/147 (42%), Positives = 94/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 113 bits (283), Expect = 4e-29 Identities = 73/361 (20%), Positives = 142/361 (39%), Gaps = 31/361 (8%) Query: 97 AKDLAYKSETFILRLEMIPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-IY 153 + ++ ++ + + L + K + + I++ F FN N +G N + Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEEDLDFKDLLDILEKDFLFYQHKE----LEHKKNQIIKRLNIQKERLKEKLEKLEDP 209 + + + + +LE FY K+ L+ K + + K + R +K + L + Sbjct: 269 KEDYKKIQYDSSSKLLEN---FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNT 325 Query: 210 KNLQLEAKELQTQASLLLTYQHLIHKHESRVVLKDFED---KECAIEIDKSMPLNAFINK 266 + + LL + + K S + L ++ I +D++ + + Sbjct: 326 LKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQS 385 Query: 267 KFTLSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGAQEESVLE------------MF 314 + K K+ + + +E++ + + + + A +E F Sbjct: 386 YYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKF 445 Query: 315 MPFKNSKIKRPMNGYEVLYYKDFKIGLGKNQKENIKL-LQDARANDLWMHVRNIPGSHLI 373 SK + + I +GKN +N L L+ A +D+W H +NIPGSH+I Sbjct: 446 KKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVI 505 Query: 374 VFCQKNTPKDEVIMELAKMLIKMQKDAFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRT 429 V + P + ++E A + K +S +DYT+ K VK GA VIYS +T Sbjct: 506 VKNIMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQT 564 Query: 430 I 430 I Sbjct: 565 I 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 SAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANVIDNDRI--LEIKGAKDLAYK 103 + P I L+ + +K + L K+ NAKI+ + I+ DRI ++ + +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SETFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SIY-SLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (333), Expect = 4e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.009 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 18/110 (16%) Query: 156 FIEDKNYYSNAFIKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMK 215 I+ +N + A+I N A + N + ++EEK++ + + + NA+K Sbjct: 339 LIKQENLNTTAYI-----NRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALK 393 Query: 216 IVKKDIQKGYKALKSSQRKWYCLGICSKKSKLSLMPKEIFNDKQFTYFKF 265 + + + Y ++ + K+SK +MP EIF+D FTYF F Sbjct: 394 --RNPVPRNYNYYQAPE----------KRSK-HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 84.8 bits (210), Expect = 2e-20 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Query: 7 LIAGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+ G G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEN 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.6 bits (121), Expect = 2e-09 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNIQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKA 102 D++ + + R + ++ + Y NL L + + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHAAKLKNEKEFVMWGDGTARREYLNAKDLARFIA 222 +YG + + P + + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYDNITSIPS-----------------VMNVGSGVDYSIEEYYEMVAQVLDYKGVFVKD 265 D I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 286 bits (732), Expect = 9e-93 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELITTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.8 bits (67), Expect = 0.047 Identities = 14/29 (48%), Positives = 17/29 (58%) Query: 225 QEIKNELEKESYIISSIVKKSKKSPTPPP 253 +EIK EL + YI + KSKKS T P Sbjct: 431 EEIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 1e-05 Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 9/246 (3%) Query: 95 ADDQSKKEVAETQKEAENARDRANKSGIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQ 154 AD S E + A ++ AE +Q++ +E N EQ Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN-------EQD 1057 Query: 155 KTEQEKQKTEQEKQKTSNIETNNQ-IKVEQEQQKTSNIETNNQIKVEQEQQKTEQEKQKT 213 TE Q E K+ SN++ N Q +V Q +T +T + K +K E+ K +T Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT-TETKETATVEKEEKAKVET 1116 Query: 214 NNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPKPTKTNQTPIQPKHLP 273 TQ+ ++ + ++ ++ + V + + T T K Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 274 NSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVTE 333 ++ + + + ++ + P + + KP + + NV Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 334 EWQNEN 339 + N Sbjct: 1237 ATTSSN 1242
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (753), Expect = 7e-92 Identities = 105/446 (23%), Positives = 186/446 (41%), Gaps = 68/446 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVREGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE-KELKEH 807 S++ S++P + + KL +ELK Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPF 549
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 6 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 65 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 66 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 125 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 126 ADDQLAKLQKSIWMLEAHLA 145 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 364 bits (936), Expect = e-127 Identities = 117/345 (33%), Positives = 190/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKSITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G + +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 560 bits (1444), Expect = 0.0 Identities = 178/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.9 bits (87), Expect = 2e-05 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + Q L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 113 bits (283), Expect = 3e-28 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 9 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 125 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 167 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 84.1 bits (208), Expect = 5e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 167 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 226 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 227 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 283 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 284 KNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 343 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 344 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 378 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.007 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 89 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALVALS 148 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 149 SSLL 152 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 5e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.1 bits (109), Expect = 5e-08 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKAVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 38.4 bits (89), Expect = 2e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 35.7 bits (82), Expect = 1e-04 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 40/218 (18%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKAVEEKKEEKKIV 157 P P P +PEP+P+P PEP K V EK + K Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKPKP 98 Query: 158 EQKVEQKVEHKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGE 217 + K +KV+ + + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 218 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKI 277 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 278 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 315 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 33.8 bits (77), Expect = 6e-04 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.004 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.4 bits (60), Expect = 0.030 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 31 LFEKYPSVNDLALASLE--EVKEIIKSVSYSNNKSKHLINMAQKVVRDFKGVIPSTQKEL 88 + K P+ +L L E +V+++ +++ S + AQKV+ G+ PS + ++ Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQV 223 Query: 89 MSLDGVGQKTANVV 102 ++ V + +NVV Sbjct: 224 LAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (622), Expect = 1e-76 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLHSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.009 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNIVKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 8e-10 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 32.1 bits (73), Expect = 0.002 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2313), Expect = 0.0 Identities = 286/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEGELGQFELMSVLRKELRS 631 + + E FT + G QN FV LKP +ER + + + + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENSAEAVIHR-AKMELGK 656 Query: 632 LPEAKGLDTINLSEVTLIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 282 bits (723), Expect = 4e-79 Identities = 106/397 (26%), Positives = 182/397 (45%), Gaps = 14/397 (3%) Query: 2794 AGNNSILWLNELFVAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2853 +G L L + + +A + I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2854 VLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2913 L L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2914 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITN 2968 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2969 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSADTLLSMINQSYNYNTWTTNAR 3028 S ++N + G+Y+R F + E F G++++ ++ LL +NQSYNY ++ R Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3029 VNYGYDFMFKNKSVIIKPQIGLRYYYIGMTGLEGVMHNALYNQFKANADPSKKSVLTIDF 3088 +YGYDF F ++++KP +G+ Y ++G T + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3089 AFENRHYFNKNSYFYAIGGVGRDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3148 E R+Y+ SYFY GV ++ + V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3149 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3185 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 92.2 bits (229), Expect = 7e-26 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 4 MRNIEARK-EKGDKQAKLAFEMCAYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRES 62 R++E + GDK+A+LA + AYR+KK IG+Y + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 63 VCEGLENLGIAL 74 + +GLE LG L Sbjct: 343 ILDGLEFLGFKL 354
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 168 bits (428), Expect = 2e-53 Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 6/155 (3%) Query: 2 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 61 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 62 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMQEIGNLS 119 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 120 ILAPLHNPANLAGIEFVQKAHPHILQIAVFDTAFH 154 LAPLHNPAN+ GI+ + P + +AVFDTAFH Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFH 151
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.4 bits (107), Expect = 5e-07 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 10/231 (4%) Query: 287 KRDKTLSKKKSEKTPTKAQTTAPSITPENAPKIPLKTPPLMPLIGANPPLNNNAPTPLEK 346 KR++T+ TP Q PS+ N + P+ P A TP E Sbjct: 987 KRNQTVDTTNIT-TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---------TPSET 1036 Query: 347 EETTKEISDNKEKAKETNNSAQNAQNAQASDKTNENKSIAPKETIKHFTQQLKQEIQEYK 406 ET E S + K E N AQ + E KS T + Q E +E + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 407 PPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFE 466 ++ + + +E KVE + + V +T + + + + + Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 467 GVDLSFSQDSSKEQPKEQLRELFKEQESSPLKENALKSYQENTDHENQETS 517 + + EQP ++ ++ + N S EN ++ T+ Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 37.7 bits (87), Expect = 1e-04 Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 9/267 (3%) Query: 28 DTKNAPKSASKDFSKILNQKISKDKTAPKENPNA--LKATPKDAKEGAKEDAKTLEKTPT 85 DT N + +++ E P ATP + E E++K KT Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 86 PHHQHAQNLAKDQQAPTLKDWLNHKKTTASHEAQHEIHENHETNPKTPNETLNKNEKKSN 145 + Q A + + N K T ++E E ET ET +++ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 146 GVTSN------AHQANLTNKNPLTPTNHANHAIKTPTTPTHNAKEPKTLKDIQTLSQKHD 199 V + + ++ K + T PT N KEP++ + + Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA-DTEQP 1171 Query: 200 LNANNIQATTTPENKTPLNAGDQFALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKES 259 + T +N G+ T T +++++ + + + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 260 HNKEHANLSNNEKKTPPLKEALQMNAI 286 HN E A S+N++ T L + N Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTN 1258
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.9 bits (80), Expect = 3e-04 Identities = 28/183 (15%), Positives = 76/183 (41%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPKDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.003 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 104 NVELLKKLGPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 158 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 159 EIDASKKLAKMQETLDFIKERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 215 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 216 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDILNNPKFATIKAIKNKQVY 273 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 274 KLP 276 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217