S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
1 | HPSH417_00245 | HPSH417_00370 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_00245 | 2 | 13 | -0.268199 | Proline/pyrroline-5-carboxylate dehydrogenase | |
HPSH417_00250 | 6 | 22 | -2.226857 | hypothetical protein | |
HPSH417_00255 | 5 | 20 | -2.356456 | hypothetical protein | |
HPSH417_00260 | 6 | 20 | -2.266240 | hypothetical protein | |
HPSH417_00265 | 4 | 17 | -0.424128 | hypothetical protein | |
HPSH417_00280 | 2 | 16 | 0.887788 | hypothetical protein | |
HPSH417_00285 | 2 | 15 | 1.454113 | hypothetical protein | |
HPSH417_00300 | 1 | 13 | 1.760382 | hypothetical protein | |
HPSH417_00305 | 1 | 13 | 1.984698 | hypothetical protein | |
HPSH417_00310 | 1 | 12 | 2.635692 | ATP-binding protein | |
HPSH417_00315 | 4 | 22 | 4.006982 | urease accessory protein UreH | |
HPSH417_00320 | 4 | 23 | 3.862658 | urease accessory protein | |
HPSH417_00325 | 3 | 21 | 3.052706 | urease accessory protein UreF | |
HPSH417_00330 | 2 | 17 | 2.734165 | urease accessory protein UreE | |
HPSH417_00335 | 2 | 19 | 2.742663 | urease accessory protein UreI | |
HPSH417_00340 | 0 | 17 | 2.606469 | urease subunit beta | |
HPSH417_00345 | -2 | 10 | 1.767089 | urease subunit alpha | |
HPSH417_00350 | 0 | 12 | 2.053475 | *lipoprotein signal peptidase | |
HPSH417_00355 | 0 | 11 | 1.650971 | phosphoglucosamine mutase | |
HPSH417_00360 | 1 | 12 | 1.795885 | 30S ribosomal protein S20 | |
HPSH417_00365 | 1 | 13 | 1.892304 | peptide chain release factor 1 | |
HPSH417_00370 | 2 | 13 | 1.444658 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00245 | ANTHRAXTOXNA | 31 | 0.040 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00265 | GPOSANCHOR | 39 | 1e-05 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00340 | UREASE | 1042 | 0.0 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. |
2 | HPSH417_00955 | HPSH417_01000 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_00955 | -1 | 11 | 3.131051 | fumarate reductase iron-sulfur subunit | |
HPSH417_00960 | -1 | 10 | 3.195875 | fumarate reductase flavoprotein subunit | |
HPSH417_00965 | -1 | 13 | 1.796823 | fumarate reductase cytochrome b-556 subunit | |
HPSH417_00970 | -2 | 15 | 1.805736 | triosephosphate isomerase | |
HPSH417_00975 | -2 | 15 | 2.981629 | enoyl-(acyl carrier protein) reductase | |
HPSH417_00980 | -2 | 15 | 3.434271 | UDP-3-O-[3-hydroxymyristoyl] glucosamine | |
HPSH417_00985 | -2 | 15 | 3.867474 | S-adenosylmethionine synthetase | |
HPSH417_00990 | -1 | 16 | 3.128535 | mulitfunctional nucleoside diphosphate | |
HPSH417_00995 | -2 | 17 | 2.590595 | hypothetical protein | |
HPSH417_01000 | -3 | 15 | 3.448589 | 50S ribosomal protein L32 |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00970 | TYPE4SSCAGA | 29 | 0.019 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00975 | DHBDHDRGNASE | 60 | 6e-13 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase |
3 | HPSH417_01500 | HPSH417_01635 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_01500 | 1 | 15 | 3.371492 | 50S ribosomal protein L21 | |
HPSH417_01505 | 1 | 15 | 3.361748 | 50S ribosomal protein L27 | |
HPSH417_01510 | 1 | 15 | 3.392160 | periplasmic dipeptide-binding protein | |
HPSH417_01515 | 0 | 14 | 3.766069 | dipeptide permease | |
HPSH417_01520 | -1 | 13 | 3.055912 | dipeptide permease | |
HPSH417_01525 | -3 | 12 | 2.845702 | dipeptide ABC transporter | |
HPSH417_01530 | -2 | 12 | 2.547754 | dipeptide transport system atp-binding protein | |
HPSH417_01535 | -2 | 12 | 2.083875 | GTPase CgtA | |
HPSH417_01540 | -1 | 12 | 1.746363 | hypothetical protein | |
HPSH417_01545 | 0 | 16 | 2.305712 | hypothetical protein | |
HPSH417_01550 | 1 | 16 | 2.909038 | glutamate-1-semialdehyde aminotransferase | |
HPSH417_01555 | 4 | 15 | 2.200644 | hypothetical protein | |
HPSH417_01560 | 4 | 15 | 1.778625 | hypothetical protein | |
HPSH417_01565 | 3 | 13 | 2.147113 | hypothetical protein | |
HPSH417_01570 | 1 | 11 | 1.030633 | hypothetical protein | |
HPSH417_01575 | 1 | 13 | 0.317397 | hypothetical protein | |
HPSH417_01580 | 0 | 13 | -0.072988 | ATP-binding protein | |
HPSH417_01585 | 1 | 17 | -1.002726 | nitrite extrusion protein NarK | |
HPSH417_01590 | 2 | 18 | -1.231511 | putative heme iron utilization protein | |
HPSH417_01595 | 0 | 16 | -1.401174 | arginyl-tRNA synthetase | |
HPSH417_01600 | 2 | 15 | -0.981963 | Sec-independent protein translocase protein | |
HPSH417_01605 | 1 | 14 | -1.117621 | guanylate kinase | |
HPSH417_01610 | 1 | 13 | -1.553811 | poly E-rich protein | |
HPSH417_01615 | -2 | 12 | -1.861395 | nuclease NucT | |
HPSH417_01620 | 0 | 11 | -1.855376 | outer membrane protein HorC | |
HPSH417_01625 | 1 | 13 | -1.985531 | flagellar basal body L-ring protein | |
HPSH417_01630 | 2 | 13 | -1.579310 | CMP-N-acetylneuraminic acid synthetase | |
HPSH417_01635 | 2 | 12 | -0.861272 | CMP-N-acetylneuraminic acid synthetase NeuA |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01585 | TCRTETA | 45 | 3e-07 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01605 | PF05272 | 29 | 0.011 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01610 | IGASERPTASE | 65 | 3e-13 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01625 | FLGLRINGFLGH | 191 | 3e-63 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. |
4 | HPSH417_02255 | HPSH417_02320 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_02255 | 0 | 13 | -3.502569 | molybdenum ABC transporter ModA | |
HPSH417_02260 | 0 | 11 | -3.654213 | molybdenum ABC transporter ModB | |
HPSH417_02265 | -1 | 9 | -2.036462 | molybdenum ABC transporter ModD | |
HPSH417_02270 | -1 | 10 | -2.326174 | glutamyl-tRNA synthetase | |
HPSH417_02275 | -2 | 12 | -2.875117 | outer membrane protein | |
HPSH417_02280 | -1 | 13 | -2.688847 | type II adenine specific methyltransferase | |
HPSH417_02285 | -1 | 15 | -2.204667 | type II adenine specific methyltransferase | |
HPSH417_02290 | -1 | 14 | -1.413162 | GTP-binding protein TypA | |
HPSH417_02295 | 4 | 16 | -1.329009 | type II adenine specific DNA methyltransferase | |
HPSH417_02300 | 5 | 15 | -0.499028 | type II restriction endonuclease | |
HPSH417_02305 | 3 | 16 | -0.579997 | type II DNA modification methyltransferase | |
HPSH417_02310 | 2 | 14 | -0.187871 | hypothetical protein | |
HPSH417_02315 | 3 | 15 | 0.604266 | catalase-like protein | |
HPSH417_02320 | 2 | 15 | 0.101565 | outer membrane protein HofC |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02265 | PF05272 | 30 | 0.009 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02290 | TCRTETOQM | 196 | 3e-57 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family |
5 | HPSH417_02465 | HPSH417_02610 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_02465 | 3 | 15 | -1.971404 | hypothetical protein | |
HPSH417_02470 | 5 | 17 | -1.910432 | hypothetical protein | |
HPSH417_02475 | 8 | 18 | -2.012953 | cag pathogenicity island protein Cag zeta | |
HPSH417_02480 | 8 | 18 | -2.267484 | cag pathogenicity island protein Cag theta | |
HPSH417_02485 | 8 | 17 | -2.210091 | cag pathogenicity island protein Cag delta | |
HPSH417_02490 | 9 | 17 | -2.580009 | cag pathogenicity island protein (cag4) | |
HPSH417_02495 | 10 | 18 | -2.879497 | CAG pathogenicity island protein 5 | |
HPSH417_02500 | 10 | 21 | -3.320672 | cag pathogenicity island protein cag alpha | |
HPSH417_02505 | 10 | 21 | -3.538354 | cag pathogenicity island protein CagZ | |
HPSH417_02510 | 9 | 22 | -3.530504 | hypothetical protein | |
HPSH417_02515 | 10 | 22 | -3.437115 | cag pathogenicity island protein CagY | |
HPSH417_02520 | 10 | 28 | -4.493227 | cag pathogenicity island protein CagX | |
HPSH417_02525 | 10 | 30 | -4.579711 | cag pathogenicity island protein W | |
HPSH417_02530 | 13 | 29 | -5.247290 | cag pathogenicity island protein CagV | |
HPSH417_02535 | 13 | 34 | -5.431038 | cag pathogenicity island protein CagU | |
HPSH417_02540 | 12 | 27 | -5.436106 | CAG pathogenicity island protein T | |
HPSH417_02545 | 9 | 24 | -6.086060 | CAG pathogenicity island protein S | |
HPSH417_02550 | 8 | 23 | -5.676344 | hypothetical protein | |
HPSH417_02555 | 7 | 20 | -4.369027 | hypothetical protein | |
HPSH417_02560 | 7 | 19 | -3.011168 | cag pathogenicity island protein R | |
HPSH417_02565 | 6 | 19 | -2.780275 | cag pathogenicity island protein CagM | |
HPSH417_02570 | 7 | 20 | -3.000725 | cag pathogenicity island protein CagN | |
HPSH417_02575 | 6 | 21 | -2.898140 | cag pathogenicity island protein L | |
HPSH417_02580 | 6 | 21 | -3.185664 | cag pathogenicity island protein CagI | |
HPSH417_02585 | 7 | 22 | -3.186123 | cag island protein | |
HPSH417_02590 | 8 | 24 | -4.360962 | cag pathogenicity island protein CagG | |
HPSH417_02595 | 7 | 22 | -3.116341 | cag pathogenicity island protein CagF | |
HPSH417_02600 | 5 | 21 | -2.280563 | cag pathogenicity island protein CagE | |
HPSH417_02605 | 3 | 17 | -0.678297 | cag pathogenicity island protein CagD | |
HPSH417_02610 | 2 | 17 | -0.017009 | cag pathogenicity island protein CagC |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02475 | TYPE3IMSPROT | 27 | 0.021 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02485 | PF07201 | 30 | 0.025 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02515 | IGASERPTASE | 44 | 9e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02520 | TYPE4SSCAGX | 869 | 0.0 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02530 | PF04335 | 118 | 6e-35 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02570 | TYPE4SSCAGX | 32 | 0.002 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02600 | ACRIFLAVINRP | 32 | 0.017 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. |
6 | HPSH417_03265 | HPSH417_03345 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_03265 | 3 | 11 | 1.315452 | ribonucleotide-diphosphate reductase subunit | |
HPSH417_03270 | 3 | 11 | 1.025615 | hypothetical protein | |
HPSH417_03275 | 1 | 10 | 0.629053 | hypothetical protein | |
HPSH417_03280 | 0 | 10 | 1.192383 | bifunctional N-acetylglucosamine-1-phosphate | |
HPSH417_03285 | 0 | 10 | 1.164853 | flagellar biosynthesis protein FliP | |
HPSH417_03290 | 0 | 11 | 1.359092 | iron(III) dicitrate transport protein | |
HPSH417_03295 | -3 | 10 | 1.863663 | ferrous iron transport protein B | |
HPSH417_03300 | -1 | 11 | 2.069355 | hypothetical protein | |
HPSH417_03305 | 1 | 13 | 3.656587 | acetyl-CoA acetyltransferase | |
HPSH417_03310 | 2 | 14 | 3.443352 | succinyl-CoA-transferase subunit A | |
HPSH417_03325 | 3 | 15 | 3.347649 | hypothetical protein | |
HPSH417_03330 | 1 | 14 | 2.610114 | short-chain fatty acids transporter | |
HPSH417_03335 | 2 | 14 | 2.719485 | putative outer membrane protein | |
HPSH417_03340 | 2 | 11 | 2.920503 | hydantoin utilization protein A | |
HPSH417_03345 | 2 | 10 | 1.835837 | N-methylhydantoinase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_03275 | PF07132 | 35 | 2e-05 | Harpin protein (HrpN) | |
>PF07132#Harpin protein (HrpN) | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_03285 | FLGBIOSNFLIP | 276 | 3e-96 | Escherichia coli: Flagellar biosynthetic protein Fl... | |
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP |
7 | HPSH417_03425 | HPSH417_03465 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_03425 | 3 | 12 | -0.533740 | RNA polymerase factor sigma-54 | |
HPSH417_03430 | 2 | 13 | 0.105396 | putative abc transporter, ATP-binding protein | |
HPSH417_03435 | 2 | 14 | -0.583667 | hypothetical protein | |
HPSH417_03440 | 1 | 14 | -0.544786 | DNA polymerase III subunits gamma and tau | |
HPSH417_03445 | 2 | 12 | 1.895161 | hypothetical protein | |
HPSH417_03450 | 2 | 15 | 3.919707 | hypothetical protein | |
HPSH417_03455 | 4 | 17 | 3.502636 | hypothetical protein | |
HPSH417_03460 | 3 | 17 | 3.514298 | hypothetical protein | |
HPSH417_03465 | 2 | 16 | 2.358632 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_03440 | IGASERPTASE | 35 | 0.001 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. |
8 | HPSH417_04240 | HPSH417_04270 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_04240 | 1 | 15 | 3.275551 | hydrogenase nickel incorporation protein | |
HPSH417_04245 | 2 | 15 | 3.090451 | flagellar hook protein FlgE | |
HPSH417_04250 | 2 | 14 | 2.445293 | CDP-diacylglycerol pyrophosphatase | |
HPSH417_04255 | 2 | 14 | 2.467139 | alkylphosphonate uptake protein | |
HPSH417_04260 | 2 | 14 | 2.162528 | hypothetical protein | |
HPSH417_04265 | 4 | 14 | 1.618053 | hypothetical protein | |
HPSH417_04270 | 4 | 15 | 1.673161 | catalase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04245 | FLGHOOKAP1 | 42 | 7e-06 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. |
9 | HPSH417_04330 | HPSH417_04355 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_04330 | 1 | 17 | 4.266026 | putative ABC transporter permease | |
HPSH417_04335 | 1 | 17 | 3.936337 | short-chain oxidoreductase | |
HPSH417_04340 | 2 | 18 | 3.993907 | hypothetical protein | |
HPSH417_04345 | 2 | 21 | 3.599170 | hypothetical protein | |
HPSH417_04350 | 1 | 21 | 3.775636 | hypothetical protein | |
HPSH417_04355 | 1 | 19 | 4.176963 | outer membrane protein BabA |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04335 | DHBDHDRGNASE | 89 | 3e-23 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04350 | SECA | 28 | 0.015 | SecA protein signature. | |
>SECA#SecA protein signature. |
10 | HPSH417_04515 | HPSH417_04540 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_04515 | 2 | 16 | -0.668417 | 5'(3')-nucleotidase/polyphosphatase | |
HPSH417_04520 | 2 | 19 | -0.812526 | hypothetical protein | |
HPSH417_04525 | 2 | 16 | -1.086735 | 6-carboxy-5,6,7,8-tetrahydropterin synthase | |
HPSH417_04530 | 2 | 16 | -1.197004 | hypothetical protein | |
HPSH417_04535 | 2 | 18 | -0.988020 | hypothetical protein | |
HPSH417_04540 | 3 | 16 | -1.715496 | cag pathogenicity island protein CagA |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04540 | TYPE4SSCAGA | 1426 | 0.0 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. |
11 | HPSH417_04760 | HPSH417_04830 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_04760 | 4 | 17 | 0.681809 | cell division protein FtsA | |
HPSH417_04765 | 3 | 19 | 0.089712 | cell division protein FtsZ | |
HPSH417_04770 | 3 | 17 | -3.639985 | IS606 transposase | |
HPSH417_04775 | 0 | 16 | -4.799270 | IS606 transposase | |
HPSH417_04780 | -1 | 15 | -4.863715 | hypothetical protein | |
HPSH417_04785 | 1 | 16 | -5.177657 | hypothetical protein | |
HPSH417_04790 | 2 | 17 | -5.614510 | exodeoxyribonuclease VII large subunit | |
HPSH417_04795 | 3 | 17 | -5.736381 | hypothetical protein | |
HPSH417_04800 | 3 | 17 | -5.653710 | hypothetical protein | |
HPSH417_04805 | 4 | 18 | -5.432044 | hypothetical protein | |
HPSH417_04810 | 4 | 20 | -5.812734 | hypothetical protein | |
HPSH417_04815 | 3 | 20 | -5.781701 | hypothetical protein | |
HPSH417_04820 | 2 | 21 | -5.452576 | hypothetical protein | |
HPSH417_04825 | 2 | 22 | -4.687274 | serine/threonine kinase | |
HPSH417_04830 | -1 | 13 | -3.388429 | protein phosphatase 2C |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04760 | SHAPEPROTEIN | 40 | 1e-05 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04805 | PF02370 | 37 | 9e-05 | M protein repeat | |
>PF02370#M protein repeat |
12 | HPSH417_05205 | HPSH417_05270 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_05205 | 3 | 10 | -0.045371 | glucokinase | |
HPSH417_05210 | 3 | 11 | -1.001885 | NADP-dependent alcohol dehydrogenase | |
HPSH417_05215 | 2 | 13 | -1.205242 | putative lipopolysaccharide biosynthesis | |
HPSH417_05220 | 1 | 11 | 0.961987 | putative lipopolysaccharide biosynthesis | |
HPSH417_05225 | 2 | 12 | 2.693090 | hypothetical protein | |
HPSH417_05230 | 0 | 14 | 3.233987 | outer membrane protein | |
HPSH417_05235 | 0 | 14 | 2.853334 | pyruvate flavodoxin oxidoreductase subunit | |
HPSH417_05240 | -1 | 11 | 2.157668 | pyruvate flavodoxin oxidoreductase subunit | |
HPSH417_05245 | -2 | 10 | 1.808677 | pyruvate flavodoxin oxidoreductase subunit | |
HPSH417_05250 | -3 | 12 | 0.797808 | pyruvate ferredoxin oxidoreductase, beta | |
HPSH417_05255 | -1 | 14 | 0.298633 | adenylosuccinate lyase | |
HPSH417_05260 | -1 | 15 | -0.602189 | outer membrane protein Horl | |
HPSH417_05265 | 2 | 17 | -0.699130 | excinuclease ABC subunit B | |
HPSH417_05270 | 4 | 26 | -1.961766 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05235 | YERSSTKINASE | 29 | 0.015 | Yersinia serine/threonine protein kinase signature. | |
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. |
13 | HPSH417_05480 | HPSH417_05670 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_05480 | 2 | 13 | 0.866980 | outer membrane protein HopI | |
HPSH417_05485 | 2 | 13 | -0.465451 | outer membrane protein HopL | |
HPSH417_05490 | 2 | 21 | -7.016833 | pyrroline-5-carboxylate reductase | |
HPSH417_05495 | 6 | 26 | -8.547549 | cell filamentation protein | |
HPSH417_05500 | 7 | 29 | -9.039216 | hypothetical protein | |
HPSH417_05515 | 7 | 30 | -8.866563 | hypothetical protein | |
HPSH417_05520 | 7 | 28 | -8.991106 | hypothetical protein | |
HPSH417_05525 | 5 | 27 | -8.143496 | DNA transfer protein | |
HPSH417_05530 | 5 | 25 | -7.066452 | topoisomerase I | |
HPSH417_05535 | 2 | 25 | -6.415115 | hypothetical protein | |
HPSH417_05540 | 2 | 25 | -7.082944 | hypothetical protein | |
HPSH417_05550 | 3 | 25 | -7.349883 | hypothetical protein | |
HPSH417_05560 | 3 | 28 | -7.729252 | ComB3 protein | |
HPSH417_05565 | 4 | 31 | -10.024346 | hypothetical protein | |
HPSH417_05570 | 5 | 32 | -10.669851 | hypothetical protein | |
HPSH417_05575 | 3 | 29 | -8.635767 | hypothetical protein | |
HPSH417_05580 | 3 | 27 | -7.941827 | VirB11 type IV secretion ATPase | |
HPSH417_05585 | 2 | 26 | -7.876693 | hypothetical protein | |
HPSH417_05590 | 5 | 25 | -8.289916 | hypothetical protein | |
HPSH417_05595 | 5 | 23 | -7.824846 | hypothetical protein | |
HPSH417_05600 | 5 | 20 | -6.706215 | conjugal transfer protein TraG | |
HPSH417_05605 | 7 | 20 | -7.607312 | hypothetical protein | |
HPSH417_05610 | 7 | 23 | -8.871473 | hypothetical protein | |
HPSH417_05615 | 5 | 22 | -6.672290 | hypothetical protein | |
HPSH417_05630 | 5 | 22 | -6.130093 | hypothetical protein | |
HPSH417_05635 | 4 | 26 | -6.667005 | PARA protein | |
HPSH417_05650 | 4 | 27 | -7.494338 | hypothetical protein | |
HPSH417_05655 | 4 | 25 | -6.734980 | hypothetical protein | |
HPSH417_05660 | 4 | 24 | -4.994131 | hypothetical protein | |
HPSH417_05665 | 1 | 26 | -6.008630 | hypothetical protein | |
HPSH417_05670 | 0 | 24 | -5.104187 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05485 | VACCYTOTOXIN | 33 | 0.009 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05540 | PF04335 | 98 | 2e-26 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05615 | RTXTOXIND | 30 | 0.025 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05655 | SECA | 31 | 0.011 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_05660 | cloacin | 39 | 1e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. |
14 | HPSH417_07145 | HPSH417_07235 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_07145 | 2 | 10 | 0.864967 | outer membrane protein | |
HPSH417_07150 | 1 | 11 | 0.181858 | branched-chain amino acid aminotransferase | |
HPSH417_07155 | 1 | 12 | -0.482075 | outer membrane protein (omp31) | |
HPSH417_07160 | 1 | 13 | -0.743089 | DNA polymerase I | |
HPSH417_07165 | 0 | 18 | -0.413617 | N-6 DNA methylase | |
HPSH417_07170 | 0 | 19 | 0.588822 | type II restriction modification enzyme | |
HPSH417_07175 | 1 | 18 | 0.349926 | type II restriction modification enzyme | |
HPSH417_07180 | 3 | 20 | 1.468141 | hypothetical protein | |
HPSH417_07185 | 2 | 13 | 0.969571 | thymidylate kinase | |
HPSH417_07190 | 3 | 12 | 0.536768 | phosphopantetheine adenylyltransferase | |
HPSH417_07195 | 3 | 13 | 0.770525 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | |
HPSH417_07200 | 3 | 13 | 0.458903 | hypothetical protein | |
HPSH417_07205 | 3 | 13 | 0.495850 | flagellar basal body P-ring biosynthesis protein | |
HPSH417_07210 | 2 | 12 | 0.567509 | DNA helicase II | |
HPSH417_07215 | 2 | 12 | 0.524278 | hypothetical protein | |
HPSH417_07220 | 2 | 12 | 0.895258 | seryl-tRNA synthetase | |
HPSH417_07225 | 2 | 15 | 0.368003 | hypothetical protein | |
HPSH417_07230 | 3 | 15 | 0.265387 | exodeoxyribonuclease VII small subunit | |
HPSH417_07235 | 2 | 14 | 1.122776 | ubiquinone/menaquinone biosynthesis |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07190 | LPSBIOSNTHSS | 221 | 2e-77 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein |
15 | HPSH417_07415 | HPSH417_07765 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_07415 | 2 | 17 | -0.887879 | hypothetical protein | |
HPSH417_07420 | 0 | 13 | -0.533970 | hypothetical protein | |
HPSH417_07425 | 0 | 13 | -0.624922 | exodeoxyribonuclease III | |
HPSH417_07430 | 1 | 11 | 0.367919 | *periplasmic competence protein | |
HPSH417_07435 | 3 | 13 | 0.442706 | hypothetical protein | |
HPSH417_07440 | 3 | 14 | 0.438946 | chromosomal replication initiation protein | |
HPSH417_07445 | 3 | 17 | -1.337139 | purine nucleoside phosphorylase | |
HPSH417_07450 | 1 | 15 | -2.207585 | hypothetical protein | |
HPSH417_07455 | 1 | 14 | -1.890255 | glucosamine--fructose-6-phosphate | |
HPSH417_07460 | -1 | 15 | -3.212217 | FAD-dependent thymidylate synthase | |
HPSH417_07465 | 0 | 16 | -4.065457 | hypothetical protein | |
HPSH417_07470 | 1 | 16 | -4.658658 | type I R-M system specificity subunit | |
HPSH417_07475 | 2 | 15 | -4.408452 | hypothetical protein | |
HPSH417_07480 | 3 | 15 | -4.696658 | type I restriction enzyme M protein (hsdM) | |
HPSH417_07485 | 5 | 19 | -6.392137 | type I restriction enzyme R protein HsdR | |
HPSH417_07490 | 7 | 21 | -6.809156 | relaxase | |
HPSH417_07495 | 6 | 25 | -6.948542 | integrase/recombinase (xerD) | |
HPSH417_07500 | 5 | 25 | -6.584023 | hypothetical protein | |
HPSH417_07505 | 8 | 24 | -6.125554 | hypothetical protein | |
HPSH417_07510 | 8 | 25 | -5.658709 | hypothetical protein | |
HPSH417_07515 | 9 | 26 | -5.221008 | hypothetical protein | |
HPSH417_07520 | 9 | 26 | -5.105668 | hypothetical protein | |
HPSH417_07525 | 10 | 23 | -5.464374 | hypothetical protein | |
HPSH417_07530 | 10 | 23 | -4.997171 | hypothetical protein | |
HPSH417_07535 | 10 | 29 | -5.940317 | hypothetical protein | |
HPSH417_07540 | 11 | 30 | -6.435361 | hypothetical protein | |
HPSH417_07545 | 7 | 17 | -4.108659 | hypothetical protein | |
HPSH417_07550 | 6 | 18 | -4.132062 | hypothetical protein | |
HPSH417_07555 | 6 | 18 | -4.121072 | hypothetical protein | |
HPSH417_07560 | 6 | 18 | -4.117148 | topoisomerase I | |
HPSH417_07565 | 6 | 17 | -3.895358 | hypothetical protein | |
HPSH417_07570 | 6 | 17 | -3.917187 | hypothetical protein | |
HPSH417_07575 | 7 | 26 | -4.197123 | type IV secretion system protein VirD4 | |
HPSH417_07580 | 7 | 24 | -3.525745 | hypothetical protein | |
HPSH417_07585 | 7 | 24 | -3.590219 | VirB11 type IV secretion ATPase | |
HPSH417_07590 | 6 | 25 | -3.931588 | hypothetical protein | |
HPSH417_07595 | 7 | 25 | -3.947386 | hypothetical protein | |
HPSH417_07600 | 7 | 25 | -3.778944 | hypothetical protein | |
HPSH417_07605 | 5 | 24 | -5.095126 | VirB10 type IV secretion protein | |
HPSH417_07610 | 7 | 24 | -6.384345 | type IV secretion system protein VirB9 | |
HPSH417_07615 | 9 | 25 | -7.427056 | putative VirB8 protein | |
HPSH417_07630 | 11 | 28 | -7.398396 | hypothetical protein | |
HPSH417_07635 | 5 | 16 | -5.400607 | hypothetical protein | |
HPSH417_07640 | 4 | 16 | -5.082181 | hypothetical protein | |
HPSH417_07645 | 1 | 12 | -0.752122 | hypothetical protein | |
HPSH417_07650 | 1 | 12 | -0.464335 | hypothetical protein | |
HPSH417_07655 | 0 | 12 | -0.007378 | hypothetical protein | |
HPSH417_07660 | 0 | 12 | 1.527193 | type I restriction enzyme R protein HsdR | |
HPSH417_07665 | 2 | 12 | 3.105471 | hypothetical protein | |
HPSH417_07670 | 1 | 12 | 3.677300 | iron(III) dicitrate transport protein FecA | |
HPSH417_07675 | -1 | 11 | 1.611915 | hypothetical protein | |
HPSH417_07680 | -1 | 9 | 0.191490 | arginase | |
HPSH417_07685 | -1 | 10 | 0.126908 | alanine dehydrogenase | |
HPSH417_07700 | 0 | 10 | -1.503955 | putative outer membrane protein | |
HPSH417_07705 | 2 | 11 | -2.287511 | putative inorganic polyphosphate/ATP-NAD kinase | |
HPSH417_07710 | 4 | 14 | -3.573125 | DNA repair protein (recN) | |
HPSH417_07715 | 0 | 14 | -4.204339 | fibronectin/fibrinogen-binding protein | |
HPSH417_07720 | 2 | 15 | -1.074924 | hypothetical protein | |
HPSH417_07725 | -1 | 17 | -1.193093 | hypothetical protein | |
HPSH417_07730 | -1 | 15 | -0.726085 | hypothetical protein | |
HPSH417_07735 | -2 | 13 | -1.274232 | hypothetical protein | |
HPSH417_07740 | 0 | 13 | -1.493257 | DNA polymerase III subunit epsilon | |
HPSH417_07745 | 0 | 15 | -2.293644 | ribulose-phosphate 3-epimerase | |
HPSH417_07750 | -1 | 15 | -4.090926 | fructose-1,6-bisphosphatase | |
HPSH417_07755 | -1 | 15 | -3.554120 | hypothetical protein | |
HPSH417_07760 | -2 | 16 | -3.267432 | putative type II methylase protein | |
HPSH417_07765 | -1 | 18 | -3.100254 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07440 | HTHFIS | 35 | 5e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07480 | TYPE4SSCAGA | 34 | 0.003 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07530 | IGASERPTASE | 38 | 2e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07600 | cloacin | 36 | 7e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07615 | PF04335 | 90 | 5e-23 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07715 | FbpA_PF05833 | 110 | 3e-28 | Fibronectin-binding protein | |
>FbpA_PF05833#Fibronectin-binding protein |
16 | HPSH417_00175 | HPSH417_00200 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_00175 | -3 | 12 | 0.602693 | comB8 competence protein | |
HPSH417_00180 | -2 | 12 | 0.829318 | comB9 competence protein | |
HPSH417_00185 | -2 | 11 | 1.476432 | comB10 competence protein | |
HPSH417_00190 | -2 | 11 | 1.281137 | mannose-1-phosphate guanyltransferase | |
HPSH417_00195 | -1 | 13 | 1.360900 | GDP-D-mannose dehydratase | |
HPSH417_00200 | -1 | 14 | 1.142162 | nodulation protein (nolK) |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00175 | PF04335 | 132 | 3e-40 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00180 | TYPE4SSCAGX | 32 | 0.002 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00195 | NUCEPIMERASE | 88 | 2e-21 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00200 | NUCEPIMERASE | 48 | 2e-08 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. |
17 | HPSH417_00555 | HPSH417_00580 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_00555 | -2 | 11 | 0.666907 | flagellin B | |
HPSH417_00560 | -1 | 13 | -0.562396 | DNA topoisomerase I | |
HPSH417_00565 | -1 | 11 | -0.313996 | hypothetical protein | |
HPSH417_00570 | 0 | 12 | -0.367380 | hypothetical protein | |
HPSH417_00575 | -1 | 11 | 0.692517 | hypothetical protein | |
HPSH417_00580 | -1 | 12 | 2.202131 | phosphoenolpyruvate synthase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00555 | FLAGELLIN | 285 | 9e-93 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00570 | IGASERPTASE | 33 | 0.002 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00575 | IGASERPTASE | 32 | 0.005 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_00580 | PHPHTRNFRASE | 294 | 3e-92 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase |
18 | HPSH417_01225 | HPSH417_01260 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_01225 | -2 | 13 | 1.119181 | neutrophil activating protein NapA | |
HPSH417_01230 | -2 | 12 | 0.894837 | histidine kinase sensor protein | |
HPSH417_01235 | -2 | 12 | 1.739448 | hypothetical protein | |
HPSH417_01240 | -3 | 12 | 2.422359 | flagellar basal body P-ring protein | |
HPSH417_01245 | -2 | 13 | 2.217002 | ATP-dependent RNA helicase | |
HPSH417_01250 | -2 | 10 | 1.793046 | hypothetical protein | |
HPSH417_01255 | -2 | 12 | 1.297488 | hypothetical protein | |
HPSH417_01260 | -2 | 12 | 2.254681 | oligopeptide permease ATPase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01225 | HELNAPAPROT | 148 | 5e-49 | Helicobacter neutrophil-activating protein A family ... | |
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01230 | PF06580 | 30 | 0.015 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01240 | FLGPRINGFLGI | 360 | e-126 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01245 | SECA | 30 | 0.027 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01260 | HTHFIS | 32 | 0.006 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |
19 | HPSH417_01605 | HPSH417_01640 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_01605 | 1 | 14 | -1.117621 | guanylate kinase | |
HPSH417_01610 | 1 | 13 | -1.553811 | poly E-rich protein | |
HPSH417_01615 | -2 | 12 | -1.861395 | nuclease NucT | |
HPSH417_01620 | 0 | 11 | -1.855376 | outer membrane protein HorC | |
HPSH417_01625 | 1 | 13 | -1.985531 | flagellar basal body L-ring protein | |
HPSH417_01630 | 2 | 13 | -1.579310 | CMP-N-acetylneuraminic acid synthetase | |
HPSH417_01635 | 2 | 12 | -0.861272 | CMP-N-acetylneuraminic acid synthetase NeuA | |
HPSH417_01640 | 1 | 12 | -0.433582 | flagellar biosynthesis protein G |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01605 | PF05272 | 29 | 0.011 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01610 | IGASERPTASE | 65 | 3e-13 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01625 | FLGLRINGFLGH | 191 | 3e-63 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01640 | SACTRNSFRASE | 28 | 0.015 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. |
20 | HPSH417_01745 | HPSH417_01790 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_01745 | -3 | 10 | 0.815610 | flagellar MS-ring protein | |
HPSH417_01750 | -4 | 10 | 1.021354 | flagellar motor switch protein G | |
HPSH417_01755 | -3 | 10 | 1.002930 | flagellar assembly protein H | |
HPSH417_01760 | -1 | 9 | 1.364921 | 1-deoxy-D-xylulose-5-phosphate synthase | |
HPSH417_01765 | 0 | 12 | 0.776685 | GTP-binding protein LepA | |
HPSH417_01770 | 0 | 14 | -1.050345 | DNA-cytosine methyltransferase | |
HPSH417_01775 | -1 | 12 | 0.618921 | hypothetical protein | |
HPSH417_01780 | -1 | 13 | 0.302147 | flagellar basal-body rod protein | |
HPSH417_01785 | 0 | 11 | -0.064955 | alpha-ketoglutarate permease | |
HPSH417_01790 | 0 | 12 | -0.240079 | cell division protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01745 | FLGMRINGFLIF | 552 | 0.0 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01750 | FLGMOTORFLIG | 349 | e-122 | Flagellar motor switch protein FliG signature. | |
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01755 | FLGFLIH | 36 | 6e-05 | Flagellar assembly protein FliH signature. | |
>FLGFLIH#Flagellar assembly protein FliH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01765 | TCRTETOQM | 141 | 2e-37 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01780 | FLGHOOKAP1 | 29 | 0.021 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01785 | TCRTETB | 41 | 8e-06 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01790 | IGASERPTASE | 37 | 6e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. |
21 | HPSH417_01870 | HPSH417_01905 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_01870 | -1 | 16 | 1.068324 | hypothetical protein | |
HPSH417_01875 | -2 | 15 | 0.943202 | copper ion binding protein (copP) | |
HPSH417_01880 | -2 | 14 | 1.035786 | copper-transporting ATPase | |
HPSH417_01885 | -2 | 12 | 0.572336 | phosphatidylserine synthase | |
HPSH417_01890 | -3 | 13 | -0.059570 | hypothetical protein | |
HPSH417_01895 | -2 | 12 | 0.288442 | cell division protein FtsH | |
HPSH417_01900 | -2 | 14 | -2.378835 | ribosomal protein L11 methyltransferase | |
HPSH417_01905 | -1 | 13 | -2.091053 | response regulator |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01870 | STREPTOPAIN | 28 | 0.003 | Streptopain (C10) cysteine protease family signature. | |
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01880 | SECYTRNLCASE | 32 | 0.008 | Preprotein translocase SecY subunit signature. | |
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01895 | HTHFIS | 34 | 0.001 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_01905 | HTHFIS | 86 | 5e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |
22 | HPSH417_02450 | HPSH417_02485 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_02450 | -2 | 10 | -0.827160 | ATP-dependent protease subunit HslV | |
HPSH417_02455 | -2 | 12 | -1.606825 | ATP-dependent protease ATP-binding subunit HslU | |
HPSH417_02460 | 1 | 15 | -1.638792 | GTPase Era | |
HPSH417_02465 | 3 | 15 | -1.971404 | hypothetical protein | |
HPSH417_02470 | 5 | 17 | -1.910432 | hypothetical protein | |
HPSH417_02475 | 8 | 18 | -2.012953 | cag pathogenicity island protein Cag zeta | |
HPSH417_02480 | 8 | 18 | -2.267484 | cag pathogenicity island protein Cag theta | |
HPSH417_02485 | 8 | 17 | -2.210091 | cag pathogenicity island protein Cag delta |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02450 | PF07520 | 29 | 0.010 | Virulence protein SrfB | |
>PF07520#Virulence protein SrfB | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02455 | HTHFIS | 29 | 0.044 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02460 | PF03944 | 32 | 0.002 | delta endotoxin | |
>PF03944#delta endotoxin | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02475 | TYPE3IMSPROT | 27 | 0.021 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02485 | PF07201 | 30 | 0.025 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ |
23 | HPSH417_02780 | HPSH417_02810 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_02780 | 2 | 14 | -1.368111 | hypothetical protein | |
HPSH417_02785 | 2 | 15 | -0.634440 | hypothetical protein | |
HPSH417_02790 | 1 | 17 | -0.403963 | dihydroorotase | |
HPSH417_02795 | 0 | 16 | -2.484259 | hypothetical protein | |
HPSH417_02800 | -2 | 15 | -2.692546 | hypothetical protein | |
HPSH417_02805 | -1 | 15 | -2.557099 | flagellar motor switch protein | |
HPSH417_02810 | -1 | 15 | -2.054424 | endonuclease III |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02780 | TYPE3IMSPROT | 31 | 0.003 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02795 | PF03544 | 49 | 4e-09 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02805 | FLGMOTORFLIN | 99 | 2e-30 | Flagellar motor switch protein FliN signature. | |
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02810 | OMS28PORIN | 30 | 0.005 | OMS28 porin signature. | |
>OMS28PORIN#OMS28 porin signature. |
24 | HPSH417_02900 | HPSH417_02965 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_02900 | -2 | 11 | 0.919136 | flagellin A | |
HPSH417_02905 | -3 | 12 | 1.107133 | 3-methyladenine DNA glycosylase | |
HPSH417_02910 | -1 | 12 | 1.567962 | hypothetical protein | |
HPSH417_02915 | 1 | 9 | 0.747945 | uroporphyrinogen decarboxylase | |
HPSH417_02920 | 1 | 9 | 0.266399 | outer-membrane protein of the hefABC efflux | |
HPSH417_02925 | 2 | 9 | -0.140184 | membrane fusion protein of the hefABC efflux | |
HPSH417_02930 | 2 | 9 | -0.292726 | cytoplasmic pump protein of the hefABC efflux | |
HPSH417_02935 | 1 | 9 | -0.957855 | hypothetical protein | |
HPSH417_02940 | 1 | 9 | -1.007496 | putative vacuolating cytotoxin (VacA)-like | |
HPSH417_02945 | -2 | 13 | -1.810562 | hypothetical protein | |
HPSH417_02950 | -3 | 12 | -0.684973 | ABC transporter ATP-binding protein | |
HPSH417_02955 | -1 | 10 | -0.212681 | hypothetical protein | |
HPSH417_02960 | -1 | 11 | -0.215853 | NAD-dependent DNA ligase LigA | |
HPSH417_02965 | -2 | 11 | -1.033352 | chemotaxis protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02900 | FLAGELLIN | 244 | 6e-77 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02905 | PF05272 | 30 | 0.010 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02920 | RTXTOXIND | 30 | 0.025 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02925 | RTXTOXIND | 52 | 6e-10 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02930 | ACRIFLAVINRP | 894 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02940 | VACCYTOTOXIN | 279 | 6e-78 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02955 | LCRVANTIGEN | 31 | 6e-04 | Low calcium response V antigen signature. | |
>LCRVANTIGEN#Low calcium response V antigen signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_02965 | HTHFIS | 55 | 1e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |
25 | HPSH417_04315 | HPSH417_04350 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_04315 | 0 | 10 | 2.416493 | cysteinyl-tRNA synthetase | |
HPSH417_04320 | 1 | 11 | 2.789112 | vacuolating cytotoxin | |
HPSH417_04325 | -1 | 16 | 2.127656 | iron(III) dicitrate transporter, ATP-binding | |
HPSH417_04330 | 1 | 17 | 4.266026 | putative ABC transporter permease | |
HPSH417_04335 | 1 | 17 | 3.936337 | short-chain oxidoreductase | |
HPSH417_04340 | 2 | 18 | 3.993907 | hypothetical protein | |
HPSH417_04345 | 2 | 21 | 3.599170 | hypothetical protein | |
HPSH417_04350 | 1 | 21 | 3.775636 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04315 | OMS28PORIN | 30 | 0.019 | OMS28 porin signature. | |
>OMS28PORIN#OMS28 porin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04320 | VACCYTOTOXIN | 1966 | 0.0 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04335 | DHBDHDRGNASE | 89 | 3e-23 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_04350 | SECA | 28 | 0.015 | SecA protein signature. | |
>SECA#SecA protein signature. |
26 | HPSH417_06530 | HPSH417_06565 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_06530 | -1 | 12 | 1.030802 | cation efflux system protein CzcA | |
HPSH417_06535 | 2 | 12 | 0.091166 | hypothetical protein | |
HPSH417_06540 | 2 | 12 | 0.313176 | branched-chain amino acid transport protein | |
HPSH417_06545 | 2 | 13 | 0.480507 | chaperone protein DnaJ | |
HPSH417_06550 | 1 | 13 | -0.071718 | hypothetical protein | |
HPSH417_06555 | -1 | 13 | -0.055909 | tRNA-specific 2-thiouridylase MnmA | |
HPSH417_06560 | -2 | 12 | 0.487122 | hypothetical protein | |
HPSH417_06565 | -1 | 14 | 0.686990 | putative nicotinate-nucleotide |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_06530 | ACRIFLAVINRP | 808 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_06540 | TCRTETB | 28 | 0.035 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_06550 | cloacin | 35 | 4e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_06565 | LPSBIOSNTHSS | 47 | 3e-09 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein |
27 | HPSH417_07900 | HPSH417_07940 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
HPSH417_07900 | -2 | 13 | 2.020824 | flagellar hook-basal body protein FliE | |
HPSH417_07905 | -1 | 11 | 1.942982 | flagellar basal body rod protein FlgC | |
HPSH417_07910 | -2 | 12 | 1.534128 | flagellar basal body rod protein FlgB | |
HPSH417_07915 | 0 | 12 | 1.799583 | cell division protein FtsW | |
HPSH417_07920 | -1 | 13 | 0.364410 | iron(III) ABC transporter periplasmic | |
HPSH417_07925 | 0 | 14 | 0.318349 | hypothetical protein | |
HPSH417_07930 | 1 | 15 | 0.555700 | putative peroxidase | |
HPSH417_07935 | 1 | 13 | 0.040628 | outer membrane protein | |
HPSH417_07940 | 1 | 13 | -0.144805 | penicillin-binding protein 2 |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07900 | FLGHOOKFLIE | 77 | 6e-22 | Flagellar hook-basal body complex protein FliE signa... | |
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07905 | FLGHOOKAP1 | 28 | 0.013 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07920 | FERRIBNDNGPP | 36 | 2e-04 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07925 | FERRIBNDNGPP | 34 | 6e-04 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
HPSH417_07940 | TYPE3IMPPROT | 29 | 0.031 | Type III secretion system inner membrane P protein ... | |
>TYPE3IMPPROT#Type III secretion system inner membrane P protein |