>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.027 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.2 bits (109), Expect = 1e-07 Identities = 40/209 (19%), Positives = 74/209 (35%) Query: 10 QENPKDAQKKEEALKKLQEENTALNRDKNDLAREKDKLADQNKTLIETNQKLTTEKERLE 69 + + + ++ +L EE + + + A + + L L E Sbjct: 74 SDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAM 133 Query: 70 RENKNLTAEKENLTKEKTELTNKNAELQKQVKALEQSQQALKNGNDELLKDREKLTTQNT 129 + +A+ + L EK L + A+L+K ++ A L ++ L + Sbjct: 134 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 193 Query: 130 ELAEKIKALTTEKTELNNKITRLTTDKENLTKDKENLTTALSTAKTQAEQTSQKLNELER 189 EL + ++ T + KI L +K L K +L AL A + S K+ LE Sbjct: 194 ELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEA 253 Query: 190 RHAPYQKLEKLYEVFLEVKDRLNFNFVAT 218 A + + E LE + A Sbjct: 254 EKAALEARQAELEKALEGAMNFSTADSAK 282 Score = 42.7 bits (100), Expect = 1e-06 Identities = 27/190 (14%), Positives = 59/190 (31%) Query: 7 NDTQENPKDAQKKEEALKKLQEENTALNRDKNDLAREKDKLADQNKTLIETNQKLTTEKE 66 + + +K +++L + + L K DL + + + + + L EK Sbjct: 92 EELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKA 151 Query: 67 RLERENKNLTAEKENLTKEKTELTNKNAELQKQVKALEQSQQALKNGNDELLKDREKLTT 126 L +L E T + K L+ + ALE Q L+ + + + Sbjct: 152 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 211 Query: 127 QNTELAEKIKALTTEKTELNNKITRLTTDKENLTKDKENLTTALSTAKTQAEQTSQKLNE 186 + L + AL K +L + + + L + + + + + L Sbjct: 212 KIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEG 271 Query: 187 LERRHAPYQK 196 Sbjct: 272 AMNFSTADSA 281 Score = 40.4 bits (94), Expect = 6e-06 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%) Query: 17 QKKEEALKKLQEENTALNRDKNDLAREKDKLADQNKTLIETNQKLTTEKERLERENKNLT 76 L++ + + L + L +L E + + Sbjct: 151 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 210 Query: 77 AEKENLTKEKTELTNKNAELQKQVKALEQSQQALKNGNDELLKDREKLTTQNTELAEKIK 136 A+ + L EK L + A+L+K ++ A L ++ L + EL + ++ Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 137 ALTTEKTELNNKITRLTTDKENLTKDKENLTTALSTAKTQAEQTSQKLN-------ELER 189 T + KI L +K L +K +L + + L+ +LE Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 190 RHA 192 H Sbjct: 331 EHQ 333 Score = 33.1 bits (75), Expect = 0.001 Identities = 39/193 (20%), Positives = 73/193 (37%) Query: 10 QENPKDAQKKEEALKKLQEENTALNRDKNDLAREKDKLADQNKTLIETNQKLTTEKERLE 69 + + +K L+ E AL + +L + + + + + L EK LE Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 70 RENKNLTAEKENLTKEKTELTNKNAELQKQVKALEQSQQALKNGNDELLKDREKLTTQNT 129 E +L + + L + L ++ K LE Q L+ N R+ L Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLD 354 Query: 130 ELAEKIKALTTEKTELNNKITRLTTDKENLTKDKENLTTALSTAKTQAEQTSQKLNELER 189 E K L E +L + +++L +D + A + E+ + KL LE+ Sbjct: 355 ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEK 414 Query: 190 RHAPYQKLEKLYE 202 + ++ +KL E Sbjct: 415 LNKELEESKKLTE 427
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 3e-05 Identities = 47/269 (17%), Positives = 93/269 (34%), Gaps = 2/269 (0%) Query: 13 QIREELEARIGELEDENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQ 72 +E+L L ++ +++ + + L N ++ KI LE L Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 73 AKDKLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAELKTENDKLNHLVIA 132 K L K + + + L E L ++ A L + + + + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 133 LNNEQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQKNLENTNNQLRQS 192 L E+ +L +A L++ T + + L + LE+ Q LE Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 275 Query: 193 LENSNDQLLQAKEKIAEENTELEREIARLKSLETMEEKSKLDLHNRRLASANQDLKRQNR 252 + ++ + + A E + + L + + DL R A + L+ +++ Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR--EAKKQLEAEHQ 333 Query: 253 KLEEENIALKERAYGLNEQLFTLQPQKPQ 281 KLEE+N + L L + K Q Sbjct: 334 KLEEQNKISEASRQSLRRDLDASREAKKQ 362 Score = 35.0 bits (80), Expect = 3e-04 Identities = 48/264 (18%), Positives = 89/264 (33%), Gaps = 5/264 (1%) Query: 16 EELEARIGELEDENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQAKD 75 + L+ EL +E + KEKL K + L+ K +K+ + + + LE A + Sbjct: 81 KALKDHNDELTEELSNA---KEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFST 137 Query: 76 KLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAELKTENDKLNHLVIALNN 135 + + L + A L + +L K + + A + K L+ E L L Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 136 EQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQKNLENTNNQLRQSLEN 195 + LE L L L+ + L Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 196 SNDQLLQAKEKIAEENTELEREIARLKSLETMEEKSKLDLHNRRLASANQDLKRQNRKLE 255 + + ++ + + A++K+LE EK+ L+ L +Q L + L Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEA--EKAALEAEKADLEHQSQVLNANRQSLR 315 Query: 256 EENIALKERAYGLNEQLFTLQPQK 279 + A +E L + L+ Q Sbjct: 316 RDLDASREAKKQLEAEHQKLEEQN 339 Score = 33.1 bits (75), Expect = 0.001 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 2/209 (0%) Query: 73 AKDKLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAELKTENDKLNHLVIA 132 DK EN L KN++L L N EL + + EK + + + Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 133 LNNEQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQKNLENTNNQLRQS 192 L + L++ + LE E L + LE + N + Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 193 LENSNDQLLQAKEKIAEENTELEREIARLKSLETMEEKSKLDLHNRRLASANQDLKRQNR 252 ++ + + + AE LE + + + + + LA+ DL++ Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK--AALAARKADLEKALE 235 Query: 253 KLEEENIALKERAYGLNEQLFTLQPQKPQ 281 + A + L + L+ ++ + Sbjct: 236 GAMNFSTADSAKIKTLEAEKAALEARQAE 264 Score = 33.1 bits (75), Expect = 0.001 Identities = 57/272 (20%), Positives = 94/272 (34%), Gaps = 15/272 (5%) Query: 13 QIREELEARIGELEDENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQ 72 + +LE + + + + L E LA + L K E G N + Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE---GAMNFSTADSA 176 Query: 73 AKDKLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAELKTENDKLNHLVIA 132 L E L + AEL + + +T ++K L + A L L + Sbjct: 177 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG 236 Query: 133 LNNEQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQKNLENTNNQLRQS 192 N + + L+ E LE R LEK + + + K LE L Sbjct: 237 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE 296 Query: 193 LENSNDQ----------LLQAKEKIAEENTELEREIARLKSLETMEEKSKLDLHNRRLAS 242 + Q L + + E +LE E +L+ + E S+ L AS Sbjct: 297 KADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 356 Query: 243 --ANQDLKRQNRKLEEENIALKERAYGLNEQL 272 A + L+ +++KLEE+N + L L Sbjct: 357 REAKKQLEAEHQKLEEQNKISEASRQSLRRDL 388 Score = 30.4 bits (68), Expect = 0.008 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 4/217 (1%) Query: 4 LIEKWFGFYQIREELEARIGELEDENAELFTTKEKLTKENTELAYKNNKL----FKENEK 59 L + + E + L K L EL ++ K Sbjct: 153 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 60 ISGLENANDQLWQAKDKLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAEL 119 I LE L K L K + + + L E L ++ A L + Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 120 KTENDKLNHLVIALNNEQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQ 179 + + + L E+ +L+ E+A L+ + L +L ++ + K+LE+ Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 180 KNLENTNNQLRQSLENSNDQLLQAKEKIAEENTELER 216 + LE N S ++ L ++E + E ++ Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQK 369 Score = 30.0 bits (67), Expect = 0.010 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 3/221 (1%) Query: 15 REELEARIGELEDENAELFTTKEKLTKENTELAYKNNKLFKENEKISGLENANDQLWQAK 74 A +++ AE + L N ++ KI LE L + Sbjct: 203 MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 262 Query: 75 DKLTKENTELTHKNAELLRERDNLAKENTELASKTAALTEKTAELKTENDKLNHLVIALN 134 +L K + + + L E L ++ A L ++ L L + A Sbjct: 263 AELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Query: 135 NEQGSLKQERAKLQEEHGFLEKRCTNLEKENQRLTDKLKKLESTQKNLENTNNQLRQSLE 194 + L+ E KL+E++ E +L ++ + K+LE+ + LE N S + Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 382 Query: 195 NSNDQL---LQAKEKIAEENTELEREIARLKSLETMEEKSK 232 + L +AK+++ + E ++A L+ L E+SK Sbjct: 383 SLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESK 423
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.6 bits (66), Expect = 0.040 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 499 NTDTGNTDTGNTDTGNTDDMSNMNNG---NDDAGNANDDMGNSNDM 541 N D+ +T NT+T T++ + + AG DDM NSNDM Sbjct: 33 NADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDM 78
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 226 bits (578), Expect = 2e-79 Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 5 VESFNLDHTKVKAPYVRIADRKKGANGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEI 64 ++SF +DHT++ AP VR+A + GD I +D+RF PNKD + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 65 IRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKA---TEVPAS 117 +RNH N ++D SPMGC+TGFY++++ + +V + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 118 NEKQCGWAANHTLEGAKNLARAFLD 142 NE QCG AA H+L+ AK +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 148 bits (376), Expect = 7e-42 Identities = 77/384 (20%), Positives = 141/384 (36%), Gaps = 86/384 (22%) Query: 5 IGIDLGTTNSAMAVYEG----NEAKIIA-NKEGKNTTPSIVAFTDKGEILVGESAKRQAV 59 + IDLGT N+ + V NE ++A ++ + S+ A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQMLG 64 Query: 60 TNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKIL 119 P I +I+ + ++G A + +++ + Sbjct: 65 RTPGN-IAAIRPM-----------------------KDGVIA-----DFFVTEKMLQHFI 95 Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179 ++ ++ ++ VP +R+A +E+ AG + +I EP +AA+ G Sbjct: 96 KQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLAAEFK 239 L E+ MV D+GGGT +V V+ V +GGD FD +I+++ + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 240 NETGIEIKNDVMALQRLKEAAENAKKELSSAM----ETEINLPFITADATGPKHLVKKLT 295 + G + AE K E+ SA EI + P+ + Sbjct: 208 SLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-S 253 Query: 296 RAKFESLTEDL----------MEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQE 345 E+L E L +E+ ++ S I + G +V+ GG + + Sbjct: 254 NEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDR 305 Query: 346 RVKAFINKDLNKSVNPDEVVAVGA 369 + + + +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGG 329
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.004 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 4/139 (2%) Query: 55 LQTDSGMQKIGNTKDEKKDDEFESLNLDP--SKQEDKLDKVADNVKKQENDAFNMPVQTD 112 L+ +G + N + EK++ ++ N+ + Q D ++N + D PV Sbjct: 971 LRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVD--EAPVPPP 1028 Query: 113 QTQTEMKTTEETKEAQKELKVVEHTSAQKESQAVVKKETPHKKPKATPKDKEAHKDKDKH 172 T +TTE E K+ + Q ++ + K+ K+ K + + Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 173 AVKELKVKKEAHKEVPKKA 191 + + + KE Sbjct: 1089 GSETKETQTTETKETATVE 1107 Score = 31.2 bits (70), Expect = 0.006 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 6/121 (4%) Query: 79 LNLDPSKQ----EDKLDKVADNVKKQENDAFNMPVQTDQTQTEMKTTEETKEAQKELKVV 134 PS+ + + + V+K E DA Q + E K+ K + +V Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKS--NVKANTQTNEVA 1086 Query: 135 EHTSAQKESQAVVKKETPHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSK 194 + S KE+Q KET + + K + + ++ K+E + V +A Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 195 T 195 Sbjct: 1147 R 1147 Score = 30.8 bits (69), Expect = 0.006 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPV 109 P ET ++ T ++ + D E+ + ++ V N Q N+ Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTDQTQTEMKTTEETKEAQKELKVVEHTSAQKESQAVVKKETPHKKPKATPKDKEAHKDK 169 +T +TQT T E +++ KV + + + V + K+ ++ +A + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKV---ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 170 DKHAVKELKVK-----KEAHKEVPKKANSK 194 + +K A E P K S Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.2 bits (148), Expect = 4e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSQYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.8 bits (72), Expect = 0.005 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 63.9 bits (155), Expect = 8e-13 Identities = 51/275 (18%), Positives = 88/275 (32%), Gaps = 25/275 (9%) Query: 148 EALAKEEPNNEEQLLPTLDAQEEKEEVKETPQKEEKPKDDETQESETPKDEEVSKELETQ 207 E +A+ + P + E E V E ++E K + Q++ + + Sbjct: 1015 EEIARVDEAPVPPPAPATPS-ETTETVAENSKQESKTVEKNEQDATETT-------AQNR 1066 Query: 208 ENKEEKQEETQDSPSAQELEAMQELVKEIQENSNGQEDKKETQESAEISQDKEIQEVVTE 267 E +E + + + E+ KE Q + KET + + K E E Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQT-----TETKETATVEKEEKAKVETEKTQE 1121 Query: 268 KTQVQELEVPK----EKTQESAEALQE----TQAHELEKQENTETPQEKEKQEIAETPQE 319 +V PK E Q AE +E E + Q NT E+ +E + ++ Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 320 --KEKQEIAETPQEKETPQEETQETQEVVTEQTQEDHYENIEDIPEPVMAKAMGEELPFL 377 E + E P+ T T + E + V + E Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQ--PTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 378 NESVAETPNSENATETPQEKEESDKTSSPLELRLN 412 + + T + T T SD + + LN Sbjct: 1240 SSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALN 1274 Score = 60.8 bits (147), Expect = 6e-12 Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 15/264 (5%) Query: 178 PQKEEKPKDDETQESETPKDEEVSKELETQENKE-EKQEETQDSPSAQELEAMQELVKEI 236 P+ E++ + +T TP + + N+E + +E P A + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 237 QENSNGQEDKKETQESAEISQDKEIQEVVTEKTQVQELEVPKEKTQESAEALQETQAHEL 296 + +K Q++ E + +EV E + + +S +ETQ E Sbjct: 1043 NSKQESKTVEKNEQDATETTAQN--REVAKEAKSNVKANTQTNEVAQSGSETKETQTTE- 1099 Query: 297 EKQENTETPQEKEKQEIAETPQEKEKQEIAETPQEKETPQEETQETQEVVTEQTQEDHYE 356 T+ EK+E A+ E + QE+ + + QE+++ Q + D Sbjct: 1100 -----TKETATVEKEEKAKVETE-KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 357 NIEDIPEPVMAKAMGEELPFLNESVAETPNSENATET-----PQEKEESDKTSSPLELRL 411 NI++ A E+ S E P +E+ T + E + ++ + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 412 NLQDLLKSLNQESLKSLLENKTLS 435 + K+ ++ S++S+ N + Sbjct: 1214 ESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 54.3 bits (130), Expect = 7e-10 Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 6/253 (2%) Query: 99 KPFLPTEMLKVLQKKLGSDMSELEPSQN--LDPTQEVLETNWDELENLGDLEALAKEEPN 156 ++ + S+ E+ + P + E + E N Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 157 NEEQLLPTLDAQEEKEEVKETPQKEEKPKDDETQESETPKDEEVSKELETQENKEEKQ-- 214 ++ T +E +E K + + + SET + + + KEEK Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 215 --EETQDSPSAQELEAMQELVKEIQENSNGQEDKKETQESAEISQDKEIQEVVTEKTQVQ 272 E+TQ+ P + ++ E + + + + + Q + TE+ + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 273 ELEVPKEKTQESAEALQETQAHELEKQENTETPQEKEKQEIAETPQEKEKQEIAETPQEK 332 ++ ES E + T Q E + P+ + ++ + P Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Query: 333 ETPQEETQETQEV 345 E + + V Sbjct: 1235 EPATTSSNDRSTV 1247
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.020 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 KGETILKALECIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 130 bits (328), Expect = 2e-41 Identities = 30/164 (18%), Positives = 69/164 (42%), Gaps = 16/164 (9%) Query: 1 MFGMGFFEILVVLVVAIIFLGPEKFPQAVVDVVKFFRAVKKTLNDAKDTLDKEINIEEIK 60 MF +GF E+L+V ++ ++ LGP++ P AV V + RA++ ++ L +E+ ++E + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 KETLEYQKLFENKVESLKGVKIEELEDAKITAENEIKSIQDLMQDYQQSLENNTPPNH-- 118 + +K + +L +++ + AE+ +S + + S E +T N Sbjct: 61 DSLKKVEKA---SLTNLTPELKASMDELRQAAESMKRSYVANDPE-KASDEAHTIHNPVV 116 Query: 119 ----------PNGEVSNEEISSDESLKEVQLATDNNAKEHDKEK 152 + S ++ + A + + + Sbjct: 117 KDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT 160
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.004 Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 30 VVALLGESGAGKSTILRILAGLEAVSSGYIEV 61 V L G G GKST++ L GL+ S + ++ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.011 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 13/138 (9%) Query: 439 SLATDK-DKELLRERFKIVKGIVD----GVFGKGENIKIALKNHLENKSAREETKEIKDF 493 SL + D + + + V G D V + + + N A + + Sbjct: 956 SLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNE 1015 Query: 494 KISSLKEKILPKP-------TTETTAEMKEKETKEKEIQENDTKEVQETQLKEAPTALQE 546 +I+ + E +P P TTET AE ++E+K E E D E + A A Sbjct: 1016 EIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSN 1075 Query: 547 FMAN-HSNLIEEIKSEFE 563 AN +N + + SE + Sbjct: 1076 VKANTQTNEVAQSGSETK 1093
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (707), Expect = 3e-96 Identities = 113/245 (46%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFFILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PF07132#Harpin protein (HrpN) Length = 356 Score = 33.9 bits (77), Expect = 7e-05 Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 42 IGGGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIG 86 +G +G G+GG +GG+ +LGG G + G G+GGG+G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 33.1 bits (75), Expect = 2e-04 Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 38 LGKLIGGGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIGD 87 +G ++GGG+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.3 bits (66), Expect = 0.007 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSNPLLGMIALMALS 147 L Y F L+L+ +LPFS S + + +L PLL + ALMA++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 88.9 bits (220), Expect = 3e-23 Identities = 49/221 (22%), Positives = 109/221 (49%), Gaps = 22/221 (9%) Query: 45 HYPIKGKQEPKNGHLVVLIDPKIEANKVIPENYQKEFEKSLFLQLSSFLERKGYSVSQF- 103 ++P K + + ++L+ P + + I + Y+ +F+ L++ L+ +GY V Sbjct: 44 YHPASEKVQALD-EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVD 102 Query: 104 -KDASEIPQDIKEKALLVLRMDGNVAILEDI-----------VEESDALNEEKVIDMSSG 151 D + K++ L + M+G + + D + S L++ + + + +G Sbjct: 103 SSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAG 162 Query: 152 YLNLNFVEPKSEDIIHSFGIDVSK--IRAVIERVELRRTNSGGFVPKTFVHRIKETDHDQ 209 ++ + +EP S + + SF +D+S+ I+ + ++SGG V K TD+ Sbjct: 163 FVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTT-HSSHSGGLVSTMV----KGTDNSN 217 Query: 210 -AIRKIMNQAYHKVMVHITKELSKKHMERYEKVSSEMKKRK 249 AI+ +N+ + +M I K+L++K++E Y+K + E+K ++ Sbjct: 218 DAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKGKR 258
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1458), Expect = 0.0 Identities = 129/610 (21%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAQINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKLTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S V + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (371), Expect = 2e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKC-----AQKTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.035 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 32 KEAEKILLDLGKKNEQVID--LNLEDLPSNEKKDEKIAEKAEEKKDEKVVEKNATDKEGD 89 +EA K++ D N++++ LN ++ K E KK +K +EK+ +E Sbjct: 568 QEANKLIKDFLSSNKELVGKTLNFNKAVADAKN---TGNYDEVKKAQKDLEKSLRKREHL 624 Query: 90 FIDPKEQEESLENIFSSLNDFQEKTDTNAQKDE-----QKNEQEEQRRLKEQQRLRKNQK 144 KE E+ LE+ + N + K N+QKDE K + R + Q L+ ++ Sbjct: 625 ---EKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKR 681 Query: 145 N-QEMLKGLQQNLDQFAQKLESVKN 168 + L+ + +NL F + + KN Sbjct: 682 ELSDKLENVNKNLKDFDKSFDEFKN 706
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 29.9 bits (67), Expect = 0.025 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 196 YVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSGVAMGEYFR-DHA 254 Y+ +G K T Q+ +L YG EY+V N + + A ++G+ G+Y D+ Sbjct: 56 YMRVGFKGET--QINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYG 113 Query: 255 RHALIIYD 262 R+ ++YD Sbjct: 114 RNYGVLYD 121
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.2 bits (73), Expect = 0.002 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILPKEVLTIAP 102 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 25/184 (13%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 37 LAQQKEFEKEVNEKRAQYLSYFKNLEQKEEALKEREKEQKAKFDDAVKQASALALQDERA 96 ++E + + + Q+ ++ QKE L ++ E+ + + ++ R Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 97 KIIEEARKNAFLEQQKGLELLQKELEEKSKQVQELHQKEAEIERLKRENNEAESRLKAEN 156 + + LE K +E EL ++++E+++ E A+ + Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAV----NELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 157 EKKLNEKLDLEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQ 216 + + E ++K + +L + + +A +S +VQ Sbjct: 294 Q-------LFKNEILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQ 339 Query: 217 ELAI 220 +L + Sbjct: 340 QLKV 343
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 27.4 bits (60), Expect = 0.035 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 49 CFIDARLFGRTAEIANQYLSKGSSVLIEGRLT----YESWMDQTGKKNSRHTIT--VDSL 102 C + ARLFG+T + L I+ Y W+ G R + ++ Sbjct: 168 CALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYG-YQRRLVVLDFIEGS 226 Query: 103 QFMDKKSDNPQANAMQ 118 D +++ + ++ Sbjct: 227 LLTDIDANDASCSRLE 242
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 4e-05 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 3/88 (3%) Query: 48 AEKTETERQNSALPPKQEEANTATTATEENPTKDTAPPLETTAQEKETKQETKQEQEKEN 107 + E + S + PKQE++ T E D ++ + T +T+Q ++ + Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 108 EPKQNSVPPVQNNQKTPTTPLMGKKPLE 135 N PV + T + + P Sbjct: 1177 ---SNVEQPVTESTTVNTGNSVVENPEN 1201 Score = 33.1 bits (75), Expect = 8e-04 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 38 KKDSAPISPNAEKTETERQNSALPPKQEEANTATTATEENPTKDTAPPLETTAQEKETKQ 97 + + + N E + + N + E + + T+E T +T ET EKE K Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK---ETATVEKEEKA 1112 Query: 98 ETKQEQEKENEPKQNSVPPVQNNQKT 123 + + E+ +E + V P Q +T Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSET 1138 Score = 32.7 bits (74), Expect = 8e-04 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 48 AEKTETERQNSALPPKQEEANTATTATEENPTKDTAPPLETTAQEKETKQETKQEQ---E 104 +E ET+ + E+ A TE+ P + + K+ + ET Q Q Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEK---TQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 105 KENEPKQNSVPPVQNNQKTPTT 126 +EN+P N P T T Sbjct: 1147 RENDPTVNIKEPQSQTNTTADT 1168 Score = 27.3 bits (60), Expect = 0.045 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%) Query: 35 FYVKKDSAPISPNAEKTETERQNSALPPKQEEANTATTAT---EENPTKDTAPPLETTAQ 91 +K+ + + A+ + ++ S+ + +T ENP T Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT-----PATT 1207 Query: 92 EKETKQETKQEQEKENEPKQNSVPPVQNNQKTPTT 126 + E+ K + SV V +N + TT Sbjct: 1208 QPTVNSES---SNKPKNRHRRSVRSVPHNVEPATT 1239
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 5e-10 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 3 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLG 60 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 LLFVINTIALGYFYNKEYGKSILD 84 LF I ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.7 bits (77), Expect = 0.002 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 KGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALN 318 + KV +IDT G + ++ R SL L D + + ++ + + AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.1 bits (62), Expect = 0.048 Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDTEIKAAL 214 + + D L P + +A + G E + YQ + FD + IK L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 294 bits (753), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.2 bits (65), Expect = 0.016 Identities = 13/34 (38%), Positives = 24/34 (70%) Query: 177 LASVDDLIANLDSRKTQFDSLISNANNLVSNVNN 210 L+ VD + ++L + + +FDS I+N N V+N+N+ Sbjct: 428 LSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNS 461
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 1e-07 Identities = 27/200 (13%), Positives = 63/200 (31%), Gaps = 29/200 (14%) Query: 8 KNKAILTGGGALLLGLIVLFYLAYRP--KAEVLQGFL--EAREYSVSSKVPGRIEKVFVK 63 + L + +I G L R + ++++ VK Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 64 KGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAK-------ALSDEVKRGSRDETINSAR 116 +G+ ++KGD++ +++ EA + ++ A+ LS ++ E Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 117 DVWQAAKSQATLAKETYKRVQDLYDNGVASLQKRDEAYAAYESTKYNESAAYQKYKMALG 176 +Q ++E R+ L E ++ +++ KY + K + Sbjct: 174 PYFQNV------SEEEVLRLTSLI----------KEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 177 GASSESKIAAKAKESAALGQ 196 ++I S Sbjct: 218 TV--LARINRYENLSRVEKS 235
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.039 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 56 IGGYMAMNIGANDVSNNVGPAVGSKAISMGGAILIAAICEMLGAIIAGGEVVSTIKGRI 114 G ++M++ A D++ +G+ G I I + G + G E++ + R+ Sbjct: 295 TVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTV--GYELMCALALRV 351
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.6 bits (71), Expect = 0.005 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 22/127 (17%) Query: 238 YQQDLRDP-NLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLE-NFYGVK 295 + D+RD + EI +G ++ +AGVL L+ L E N GV Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV- 120 Query: 296 GRLEIVHSKPLVVVDFAHTTDGMQQVFESFKNQKITALFGAGGDRDKTKRPKMGAIASCY 355 + + V + +++ ++ G + R M A AS Sbjct: 121 -------------------FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSK 161 Query: 356 AHQIILT 362 A ++ T Sbjct: 162 AAAVMFT 168
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 111 bits (280), Expect = 9e-29 Identities = 77/401 (19%), Positives = 152/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEIKGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-IYEHQEEDLDFKDLLEILE 170 K + + I++ F FN N +G N + + + + + ++LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNQIIKRLNIQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLIHKHESRVVLKDFED---KECTIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPFKNSKIKRPMSGYEVLYY 334 +E++ + + + + A +E F SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRNIPGSHLIVFCQKNAPKDEVIMELAKML 393 I +GKN +N L L+ A +D+W H +NIPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 49/92 (53%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEIKGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ + +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF01540#Adhesin lipoprotein Length = 475 Score = 31.6 bits (71), Expect = 0.004 Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 48 LLVLNQEIKNIDKQHALITKEFEKKKETNEKLSLQMDEFLDDLQLSGERVNDLEEVVGVN 107 LL L+++I++ AL + E+K + +EK Q+ ++ L V V + Sbjct: 252 LLKLSEKIQSFADTIALTITKLERKFQIDEKFKKQLISTIELLNKKSVEVKTFATVNTIK 311 Query: 108 R 108 + Sbjct: 312 K 312
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 2e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.007 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 13/86 (15%) Query: 183 TNNKPLKEETLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLG 242 +N + + +E ++EEK++ + + + NA+K + + + Y ++ + Sbjct: 358 SNEQIINKEKIREEKQKIILDQAKALETQYVHNALK--RNPVPRNYNYYQAPE------- 408 Query: 243 ICSKKSKLSLMPKEIFNDKQFTYFKF 268 K+SK +MP EIF+D FTYF F Sbjct: 409 ---KRSK-HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 54.4 bits (131), Expect = 2e-10 Identities = 53/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKA 102 D++ + + R + ++ + Y NL L + + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVSYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYDNIAS----------MPS-------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 D I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 362 bits (931), Expect = e-127 Identities = 116/345 (33%), Positives = 190/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMTLSLKSPNFKNAIQ 186 A++ SA + NGA IERE+ + L L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKSITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G + +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.049 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + ++I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.004 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 558 bits (1440), Expect = 0.0 Identities = 178/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.5 bits (86), Expect = 3e-05 Identities = 45/207 (21%), Positives = 91/207 (43%), Gaps = 14/207 (6%) Query: 49 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 107 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 108 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE----KELSAIAIDIAKEVI 163 + L + E K+Q + + + + Q L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 164 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 220 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 221 AISKGGVMITSSNGSLDGNLMERFKTL 247 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (287), Expect = 8e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 9 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 125 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 167 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 84.1 bits (208), Expect = 5e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 167 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 226 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 227 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 283 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 284 KNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 343 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 344 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 378 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.1 bits (91), Expect = 2e-05 Identities = 59/308 (19%), Positives = 105/308 (34%), Gaps = 53/308 (17%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSKTTSKTTIKEETQRGSLKELLHHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTN 270 ++ + + IK +L + + T + IF+ + Sbjct: 190 KK--EVRIKGHFDIK--------GIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKH 239 Query: 271 SSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVFAIAGLIV 320 + ++ M+ L I + G M+ +K L I +I+ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 321 TPVVFYGI 328 P I Sbjct: 300 FPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 0.001 Identities = 51/245 (20%), Positives = 88/245 (35%), Gaps = 31/245 (12%) Query: 169 FSPKKEGFENTLSDLQKKETNNDKEKENRKENPIDENHKTPNKESFLAIPTPY------N 222 ++P+ E T+ D T N+ + + P + E+ + P P Sbjct: 981 YNPEVEKRNQTV-DTTNITTPNNIQADVPSV-PSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 223 TTLNDLKPQEGLVQISSHPPTHYTI----YPKKNRFDDLSNPTNPTLKEPKQETKEREPM 278 T + K + V+ + T T K+ + + +N + + ETKE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 279 LKKETPTTLKPIMPISAPNLENDNKTENHKTPNHPIKGDNL----QESPQENPQKENQKE 334 KET T K E K E KT P + ++S PQ E +E Sbjct: 1099 ETKETATVEK----------EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 335 NIEEKENLKEEKRETENAPSFSPLTPTSAKKPVMVKELSENKEILDGLDYGEVEKPKDYE 394 N + N+KE + +T P + + ++E+ + G VE P++ Sbjct: 1149 N-DPTVNIKEPQSQTNTTADTE--QPAKETSSNVEQPVTESTTVNTGNSV--VENPENTT 1203 Query: 395 LPTTQ 399 TTQ Sbjct: 1204 PATTQ 1208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 4e-11 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 7/121 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253 IL+A+D + L + + N L ++ +V+TD+ MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIHEMLRKTL 312 F++L IK LPV++ S+ ++ A A ++ K ++ E+ ++ + L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 313 S 313 + Sbjct: 120 A 120
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 5e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERRSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 281 bits (720), Expect = 1e-78 Identities = 106/397 (26%), Positives = 184/397 (46%), Gaps = 14/397 (3%) Query: 2796 AGNNSILWLNELFVAKGGNPLFAPYYLQDTPTKHIVTLMEDVSSALGMLSKPNLKNNSTD 2855 +G L L + + +A + T I + ++ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2856 ALQLNTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2915 L L+ SRL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2916 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYVAYGYSGFYER--ITS 2970 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2971 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQINSNDTLLSMINQSYKYNTWTTNAK 3030 S ++N + G+Y+R F + E F G++++ +N LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3031 VNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMHNALYNQFKANADPSKKSVLTIDF 3090 +YGYDF F +++LKP +G+ Y ++G T + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3091 ALENRHYFNTNSYFYAIGGVGRDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3150 +E R+Y+ SYFY GV ++ + V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3151 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3187 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 34.6 bits (79), Expect = 0.009 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 700 SYSFDGINNAFNEDKFNGGSFNFNHAEQTDAFNNNSFNGGSFNFNSKQVDFNHSSFNGGV 759 SYS + E FN + ++A Q +N + G+ + + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 760 FNF---NNTPKVSFTDDTFNVNNQFKING-AQTAFTFNKG 795 + + + + + + N Q N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370 Score = 33.5 bits (76), Expect = 0.019 Identities = 85/472 (18%), Positives = 143/472 (30%), Gaps = 95/472 (20%) Query: 82 SVNENNNNKSYYVSPLRTWAGGNRNFTQNYNNSQLYIGTKNASATPNNSSIWFGEKGYVG 141 V+ N +Y +S L + GG+ N + L +G N N+ + + K Sbjct: 133 EVDMQNAVGTYNLSGLINFTGGD--LDVNMQKATLRLGQFNG----NSFTSY---KDSAD 183 Query: 142 FITGV-FKAKDIFITGAVGSGNEWKTGGGAILVFESLNELNTNGAYFQNNRAGT---QTS 197 T V F AK+I I + N +G G L L + A + Sbjct: 184 RTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLT-LQASEGITSRENAEISLYDGA 242 Query: 198 WINLISNHSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNF-----GFDNMDSNGT 252 +NL SN + N G G + A + NF G N G Sbjct: 243 TLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGI 302 Query: 253 -----TTISGVTFNNNGALTY----KGGNGIGGSITFTNSNINHYKLNLNANSVTFNNST 303 T I + + L +GG + +N+ N+ K + +S +N+ Sbjct: 303 IASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQ 362 Query: 304 LGSMPN------------------GNANTIGNAYILNAN------NITFNNLTFNGGWFV 339 + + PN G NT+ N +N N F + Sbjct: 363 VINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHL 422 Query: 340 FDRSDAHVNFQGTTTINNPTSPFVNMTGKVTINPNAIFNIQ--NYTPSIGSAYTLFSM-- 395 +N + + N+TG +T++ N Q Y + SA F Sbjct: 423 HIGKGG-INLSNQAS--GRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGT 479 Query: 396 --KNGSITYND------------------------VDNLWNIIRL----------KNTQA 419 KNG+ T+N+ + +N + K A Sbjct: 480 DTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITA 539 Query: 420 TKDNSKNATSNNNTHTYYVTYNLGGTLYNFRQIFSPDSIVLQSVYYGANNIY 471 + + + + N ++G + I S I + G +IY Sbjct: 540 STNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2311), Expect = 0.0 Identities = 287/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 2 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 61 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 119 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 177 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 178 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 231 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 232 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 286 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 287 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 345 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 346 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 404 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 405 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 464 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 465 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKVLESRYTRLLQWVLNHKLI 517 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 518 ISIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 573 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 574 AIEKHDEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEGELGQFELMSVLRKELRS 632 + + E FT + G QN FV LKP +ER + + + + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENSAEAVIHR-AKMELGK 656 Query: 633 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKV 692 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 693 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 752 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 753 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 812 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 813 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 872 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 873 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 932 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 933 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 991 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 992 GLMISMVLSLLIVPVFYRLL 1011 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 30.2 bits (68), Expect = 0.006 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.033 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.3 bits (125), Expect = 4e-10 Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 P P P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.1 bits (109), Expect = 5e-08 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 A Q PP P P P P P P E P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 143 KVEEKKVVEEKKEE 156 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 45.0 bits (106), Expect = 1e-07 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK-KPNHKHKALKKV 141 P P P P P P PPK +PKPKPKP+PK + + + V Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Query: 142 EKVEE 146 + VE Sbjct: 115 KPVES 119 Score = 39.6 bits (92), Expect = 8e-06 Identities = 18/57 (31%), Positives = 24/57 (42%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 130 + P P P+ P P P P PKP KPKP+P K + +PK+ Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.8 bits (90), Expect = 2e-05 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 38/218 (17%) Query: 101 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 160 P PP +P +P EP+P+P+P P+ P +E VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 161 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGE 220 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 221 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 280 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 281 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 318 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 34.6 bits (79), Expect = 3e-04 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 132 P+ P P P P PKP K + +PK +P + Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 14/56 (25%), Positives = 20/56 (35%) Query: 76 PSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131 P + P K P P PKP++K + +PK KP +P Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 425 bits (1095), Expect = e-146 Identities = 165/581 (28%), Positives = 279/581 (48%), Gaps = 85/581 (14%) Query: 10 ILAIALSFLFIAIYSYFFQKPNKT--TTQTTKQETTNNHTATNPNAPNAQNFGTTQTIPQ 67 +L IAL F+ I+ + Q N QTT+ TT +A + P + Sbjct: 7 LLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQ--------- 57 Query: 68 ENLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHVG--HLFSSKEN---- 120 L ++ + + I++ G ++Q L P L L + Sbjct: 58 -GKLISVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQ 109 Query: 121 AQPPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 176 AQ L ++ P A+ +PL +N A G NE V D Sbjct: 110 AQSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 177 GTLSIIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNGYRPV 218 + KT Y + + + N L P + + Sbjct: 157 AGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 219 ADLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQ 275 +TF G D+K EK + D + + S +++ + +YF T + Sbjct: 216 -----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-D 269 Query: 276 GFEALIDSEIGTKNPLGFISLKNEA-----------DLHGYIGPKDYRSLKAISPMLTDA 324 G + +G N + I K++ + ++GP+ + A++P L Sbjct: 270 GTNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLT 327 Query: 325 IEYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIILYPLSYKGMVSMQKLKELA 384 ++YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L Sbjct: 328 VDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQ 387 Query: 385 PKMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELK 444 PK++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 388 PKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELR 447 Query: 445 SSEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLI 504 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + Sbjct: 448 QAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFL 507 Query: 505 TFPAGLVLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKE 545 FP+GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 508 WFPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.002 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Query: 54 AGVKESVKEVKEESVKETNTKENHQNNIEEKKQKLETETPQEE-KITSKAPKKNLKEES 111 A KE + KET T E +E+K K+ETE QE K+TS+ K + E+ Sbjct: 1086 AQSGSETKETQTTETKETATVE------KEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.6 bits (188), Expect = 7e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.3 bits (81), Expect = 3e-04 Identities = 28/183 (15%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLSPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.034 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLILNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217