| S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
| 1 | LSH36_00157 | LSH36_00171 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00157 | 1 | 23 | 3.711821 | protein slyX-like protein | |
| LSH36_00158 | 0 | 17 | 3.801250 | hypothetical protein | |
| LSH36_00159 | 0 | 17 | 4.132393 | histidyl-tRNA synthetase HisS | |
| LSH36_00160 | 0 | 15 | 2.706018 | putative tRNA synthetase | |
| LSH36_00161 | 2 | 14 | 1.177490 | ATP phosphoribosyltransferase HisG | |
| LSH36_00162 | 3 | 15 | 0.498537 | hypothetical protein | |
| LSH36_00163 | 3 | 14 | 0.198615 | acyl-CoA dehydrogenase | |
| LSH36_00164 | 4 | 13 | -0.379616 | putative protein | |
| LSH36_00165 | 4 | 12 | -0.407294 | putative adenosylcobalamin(B12)-dependent | |
| LSH36_00166 | 6 | 16 | -0.383519 | Hemolysin-type calcium-binding protein repeat | |
| LSH36_00167 | 4 | 19 | -0.786660 | Toluene-4-sulfonate monooxygenase system | |
| LSH36_00168 | 4 | 18 | -0.425657 | urease accessory protein UreG | |
| LSH36_00169 | 5 | 20 | -0.204747 | urease accessory protein UreF | |
| LSH36_00170 | 4 | 20 | 0.044453 | urease accessory protein UreE | |
| LSH36_00171 | 3 | 18 | 0.193636 | urease subunit alpha |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00159 | OUTRMMBRANEA | 30 | 0.029 | Outer membrane protein A signature. | |
>OUTRMMBRANEA#Outer membrane protein A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00166 | RTXTOXINA | 101 | 7e-24 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00171 | UREASE | 1064 | 0.0 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 2 | LSH36_00309 | LSH36_00323 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00309 | 1 | 22 | 3.392289 | protein Tas | |
| LSH36_00310 | 1 | 21 | 3.313423 | putative transcriptional regulator, AraC family | |
| LSH36_00311 | 1 | 21 | 2.704991 | putative protein | |
| LSH36_00312 | 1 | 23 | 2.900183 | Lipocalin-like domain protein | |
| LSH36_00313 | 0 | 23 | 2.057324 | hypothetical protein | |
| LSH36_00314 | 0 | 24 | 1.806211 | putative 3-hydroxyacyl-CoA dehydrogenase | |
| LSH36_00315 | 0 | 15 | 1.946142 | short chain dehydrogenase / reductase | |
| LSH36_00316 | 1 | 14 | 1.982226 | helix-turn-helix protein | |
| LSH36_00317 | 3 | 17 | 1.173094 | putative membrane protein | |
| LSH36_00318 | 2 | 17 | 1.806919 | putative fatty acid desaturase | |
| LSH36_00319 | 2 | 14 | 2.477142 | putative integral membrane protein | |
| LSH36_00320 | 2 | 12 | 3.089569 | NTP pyrophosphohydrolase | |
| LSH36_00321 | 1 | 11 | 2.980348 | putative protein in bacteria | |
| LSH36_00322 | 2 | 15 | 2.831641 | EF hand/EF-hand domain protein pair | |
| LSH36_00323 | 2 | 18 | 3.015599 | RNA polymerase sigma factor |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00315 | DHBDHDRGNASE | 101 | 4e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 3 | LSH36_00442 | LSH36_00447 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00442 | 0 | 28 | 3.346244 | branched-chain amino acid transport protein | |
| LSH36_00443 | -1 | 25 | 3.343329 | putative formate dehydrogenase, subunit FdhD | |
| LSH36_00444 | 0 | 18 | 3.672845 | putative molybdopterin-guanine dinucleotide | |
| LSH36_00445 | -1 | 14 | 3.569799 | molybdopterin-guanine dinucleotide biosynthesis | |
| LSH36_00446 | 0 | 12 | 3.765540 | putative molybdopterin-guanine dinucleotide | |
| LSH36_00447 | -1 | 13 | 3.915485 | molybdopterin molybdenumtransferase MoeA |
| 4 | LSH36_00661 | LSH36_00726 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00661 | -1 | 20 | -3.889948 | phosphomannomutase/phosphoglucomutase AlgC | |
| LSH36_00662 | 1 | 25 | -5.115410 | putative capsule polysaccharide export | |
| LSH36_00663 | 2 | 26 | -5.186343 | putative capsular polysaccharide transport | |
| LSH36_00664 | 1 | 28 | -4.907562 | Uracil-DNA glycosylase | |
| LSH36_00665 | 1 | 25 | -4.633179 | SseB protein | |
| LSH36_00666 | 1 | 24 | -4.804315 | hypothetical protein | |
| LSH36_00667 | 1 | 23 | -4.228088 | putative fatty acid desaturase | |
| LSH36_00668 | 0 | 24 | -4.712042 | NADH-quinone oxidoreductase subunits E/F | |
| LSH36_00669 | 0 | 24 | -4.966584 | putative membrane protein | |
| LSH36_00670 | -1 | 26 | -5.482421 | transglycosylase-like protein | |
| LSH36_00671 | -1 | 28 | -5.978295 | signal recognition particle-docking protein | |
| LSH36_00672 | 0 | 29 | -7.122929 | Cation membrane transporter | |
| LSH36_00673 | 0 | 29 | -7.271003 | putative intracellular septation protein | |
| LSH36_00675 | 0 | 29 | -6.683229 | O-succinylhomoserine sulfhydrylase MetZ | |
| LSH36_00676 | 1 | 28 | -6.927944 | GTP cyclohydrolase I | |
| LSH36_00677 | 1 | 28 | -6.854101 | hypothetical protein | |
| LSH36_00678 | 0 | 31 | -6.029533 | trk system potassium uptake protein | |
| LSH36_00679 | 1 | 32 | -5.759628 | Trypsin-like serine protease, typically | |
| LSH36_00680 | 0 | 35 | -6.093210 | glycyl-tRNA synthetase alpha subunit | |
| LSH36_00681 | -1 | 37 | -6.311273 | hypothetical protein | |
| LSH36_00682 | -1 | 38 | -6.169937 | glycyl-tRNA synthetase beta subunit | |
| LSH36_00683 | -1 | 38 | -5.841672 | pyruvate, phosphate dikinase PpdK | |
| LSH36_00684 | -1 | 34 | -6.677267 | cell wall hydrolase-like protein | |
| LSH36_00685 | -1 | 33 | -6.484347 | dihydroneopterin aldolase-like protein | |
| LSH36_00686 | -1 | 32 | -6.034062 | dihydropteroate synthase FolP | |
| LSH36_00687 | -1 | 29 | -5.871676 | phosphoglucosamine mutase GlmM | |
| LSH36_00688 | -1 | 29 | -6.311953 | Permease of the drug/metabolite transporter | |
| LSH36_00689 | -2 | 28 | -6.392291 | ketol-acid reductoisomerase IlvC | |
| LSH36_00690 | -1 | 33 | -7.373316 | putative transcriptional regulator, AsnC family | |
| LSH36_00691 | 0 | 32 | -7.094528 | putative transcriptional regulator, AsnC family | |
| LSH36_00692 | 1 | 30 | -7.590253 | putative serine-glyoxylate aminotransferase | |
| LSH36_00693 | 1 | 32 | -7.271728 | putative FAD-dependent hydroxylase | |
| LSH36_00694 | 2 | 31 | -7.445159 | hypothetical protein | |
| LSH36_00695 | 2 | 31 | -7.663842 | putative pyrimidine 5'-nucleotidase | |
| LSH36_00696 | 2 | 30 | -7.177588 | transcriptional regulator, GntR family | |
| LSH36_00697 | 3 | 32 | -7.195849 | glycosyl transferase-like protein | |
| LSH36_00698 | 2 | 31 | -6.884176 | carbamoyl-phosphate synthase small chain | |
| LSH36_00699 | 2 | 31 | -7.526085 | putative protein | |
| LSH36_00700 | 0 | 20 | -4.567233 | Endopolygalacturonase | |
| LSH36_00701 | -1 | 17 | -2.677688 | hypothetical protein | |
| LSH36_00702 | -1 | 14 | -1.768518 | putative protein in bacteria | |
| LSH36_00703 | -1 | 14 | -1.447610 | hypothetical protein | |
| LSH36_00704 | -2 | 14 | -0.851495 | hypothetical protein | |
| LSH36_00705 | -2 | 13 | -0.799627 | Excinuclease ABC subunit B | |
| LSH36_00706 | 0 | 23 | -2.469181 | putative ETC complex I subunit | |
| LSH36_00707 | 3 | 18 | -3.376860 | cyclolysin-activating lysine-acyltransferase | |
| LSH36_00708 | 4 | 19 | -3.364426 | Hint domain protein | |
| LSH36_00709 | 4 | 20 | -2.728749 | Hint domain protein | |
| LSH36_00711 | 4 | 19 | -2.932870 | *putative carbon monoxide dehydrogenase subunit | |
| LSH36_00712 | 4 | 20 | -2.767936 | Aerobic-type carbon monoxide dehydrogenase, | |
| LSH36_00713 | 0 | 19 | -5.428901 | xanthine dehydrogenase, molybdenum binding | |
| LSH36_00714 | 0 | 20 | -4.455080 | Aerobic-type carbon monoxide dehydrogenase, | |
| LSH36_00715 | 0 | 21 | -3.598440 | Xanthine and CO dehydrogenase maturation factor, | |
| LSH36_00716 | 0 | 24 | -4.185049 | hypothetical protein | |
| LSH36_00717 | 0 | 23 | -3.952308 | hypothetical protein | |
| LSH36_00718 | 0 | 23 | -3.337231 | High temperature protein G | |
| LSH36_00719 | 3 | 23 | 0.676767 | deoxyribodipyrimidine photo-lyase PhrB | |
| LSH36_00720 | 1 | 17 | -1.154470 | protoporphyrinogen oxidase | |
| LSH36_00721 | 0 | 17 | -1.907696 | Putative protein-S-isoprenylcysteine | |
| LSH36_00722 | 1 | 19 | -2.437840 | dihydroneopterin aldolase | |
| LSH36_00723 | 2 | 21 | -3.084063 | pyridoxamine 5'-phosphate oxidase | |
| LSH36_00724 | 3 | 22 | -3.327315 | hypothetical protein | |
| LSH36_00725 | 2 | 19 | -2.642384 | hypothetical protein | |
| LSH36_00726 | 2 | 20 | -1.767566 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00662 | cloacin | 32 | 0.004 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00671 | TONBPROTEIN | 44 | 4e-07 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00683 | PHPHTRNFRASE | 291 | 3e-91 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00691 | PF05043 | 27 | 0.027 | Transcriptional activator | |
>PF05043#Transcriptional activator | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00704 | ACETATEKNASE | 29 | 0.006 | Acetate kinase family signature. | |
>ACETATEKNASE#Acetate kinase family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00707 | RTXTOXINC | 64 | 2e-15 | Gram-negative bacterial RTX toxin-activating protein C... | |
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C | |||||
| 5 | LSH36_00789 | LSH36_00794 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00789 | 2 | 21 | 1.759528 | putative glycosyl transferase, family 2 | |
| LSH36_00790 | 2 | 20 | 2.050003 | putative glycosyl transferase | |
| LSH36_00791 | 2 | 20 | 2.019750 | Cholesterol dehydrogenase | |
| LSH36_00792 | 2 | 16 | 2.183186 | putative oxidoreductase | |
| LSH36_00793 | 2 | 13 | 2.514408 | bacterial polymer biosynthesis protein, | |
| LSH36_00794 | 2 | 13 | 2.470946 | putative D-beta-hydroxybutyrate dehydrogenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00791 | NUCEPIMERASE | 57 | 2e-11 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00794 | DHBDHDRGNASE | 68 | 1e-15 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 6 | LSH36_00813 | LSH36_00824 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00813 | 2 | 22 | -3.598326 | O-acetylhomoserine / O-acetylserine | |
| LSH36_00814 | 2 | 25 | -4.111291 | hypothetical protein | |
| LSH36_00815 | 2 | 24 | -3.959422 | hypothetical protein | |
| LSH36_00816 | 3 | 24 | -3.490090 | protein imuB-like protein | |
| LSH36_00817 | 2 | 22 | -3.300737 | DNA polymerase III subunit alpha | |
| LSH36_00819 | 0 | 20 | -2.967052 | *putative 23S rRNA | |
| LSH36_00820 | -1 | 22 | -3.248678 | putative CoA-binding protein | |
| LSH36_00821 | -3 | 24 | -3.030698 | phosphoribosyl-ATP pyrophosphatase HisE | |
| LSH36_00822 | -1 | 22 | -3.527281 | imidazole glycerol phosphate synthase subunit | |
| LSH36_00823 | -1 | 22 | -3.414807 | 1-(5-phosphoribosyl)-5-[(5- | |
| LSH36_00824 | -2 | 18 | -3.010464 | putative protein in bacteria |
| 7 | LSH36_00919 | LSH36_00928 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00919 | 2 | 28 | -2.491568 | SapC | |
| LSH36_00920 | 1 | 28 | -1.817044 | Outer membrane efflux protein BepC precursor | |
| LSH36_00921 | 1 | 27 | -1.469810 | putative ATP-binding/permease fusion ABC | |
| LSH36_00922 | -1 | 25 | 0.132061 | type I secretion membrane fusion protein, HlyD | |
| LSH36_00923 | 0 | 16 | 3.265355 | tRNA-dihydrouridine synthase A | |
| LSH36_00924 | 0 | 17 | 3.983645 | putative permease | |
| LSH36_00925 | -1 | 19 | 4.620023 | hypothetical protein | |
| LSH36_00926 | -2 | 17 | 3.565860 | putative Fe-S protein | |
| LSH36_00927 | -1 | 17 | 3.286137 | RNAse H-fold protein YqgF | |
| LSH36_00928 | -1 | 17 | 3.142984 | cytochrome c-type biogenesis protein CycH |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00919 | CARBMTKINASE | 29 | 0.016 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00921 | ACRIFLAVINRP | 31 | 0.021 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00922 | RTXTOXIND | 227 | 1e-71 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00925 | PF09025 | 29 | 0.009 | YopR Core | |
>PF09025#YopR Core | |||||
| 8 | LSH36_00974 | LSH36_00993 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00974 | 2 | 20 | -0.017766 | NADH-quinone oxidoreductase subunit B | |
| LSH36_00975 | 1 | 20 | -0.412443 | NADH-quinone oxidoreductase subunit C | |
| LSH36_00976 | 2 | 18 | -0.263920 | NADH-quinone oxidoreductase subunit D | |
| LSH36_00977 | 2 | 19 | -0.920980 | NADH-quinone oxidoreductase chain 2 | |
| LSH36_00978 | 2 | 18 | -0.711964 | NADH-quinone oxidoreductase chain 2 | |
| LSH36_00979 | -2 | 20 | -2.446637 | hypothetical protein | |
| LSH36_00980 | -2 | 20 | -1.539109 | NADH-quinone oxidoreductase subunit F | |
| LSH36_00981 | -2 | 22 | -1.478586 | hypothetical protein | |
| LSH36_00982 | -3 | 21 | -2.240897 | hypothetical protein | |
| LSH36_00983 | -1 | 21 | -1.885538 | hypothetical protein | |
| LSH36_00984 | -2 | 20 | -1.940038 | hypothetical protein | |
| LSH36_00985 | -2 | 21 | -1.408976 | NADH-quinone oxidoreductase subunit G | |
| LSH36_00986 | 0 | 25 | -3.024335 | hypothetical protein | |
| LSH36_00987 | -1 | 21 | -3.513036 | NADH-quinone oxidoreductase subunit H | |
| LSH36_00988 | -2 | 19 | -3.329597 | NADH-quinone oxidoreductase subunit I | |
| LSH36_00989 | -1 | 17 | -3.145846 | gamma-carboxymuconolactone decarboxylase | |
| LSH36_00990 | -1 | 17 | -3.124716 | NADH-quinone oxidoreductase subunit J | |
| LSH36_00991 | 0 | 15 | -3.332853 | NADH-quinone oxidoreductase subunit K | |
| LSH36_00992 | -1 | 15 | -3.066142 | NADH-quinone oxidoreductase subunit L | |
| LSH36_00993 | -1 | 15 | -3.048237 | NADH-quinone oxidoreductase subunit M |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00978 | IGASERPTASE | 43 | 2e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00986 | TYPE4SSCAGA | 29 | 0.007 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| 9 | LSH36_01141 | LSH36_01147 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01141 | -2 | 20 | -3.201956 | Transcriptional regulator | |
| LSH36_01142 | -1 | 23 | -3.219737 | pyruvate ferredoxin/flavodoxin | |
| LSH36_01143 | -1 | 26 | -3.269913 | acetyltransferase domain-containing protein | |
| LSH36_01144 | 1 | 24 | -3.292967 | putative glutamate racemase | |
| LSH36_01145 | 1 | 24 | -3.958125 | N-acetyl-gamma-glutamyl-phosphate reductase | |
| LSH36_01146 | 2 | 25 | -3.341460 | cytochrome c-type biogenesis protein CcmE | |
| LSH36_01147 | 0 | 20 | -3.320468 | peptidoglycan binding domain-containing protein |
| 10 | LSH36_01370 | LSH36_01375 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01370 | 5 | 12 | 1.163067 | 3-dehydroquinate synthase AroB | |
| LSH36_01371 | 5 | 13 | 0.868583 | dimethylglycine dehydrogenase DmgdH | |
| LSH36_01372 | 7 | 14 | 0.477353 | dimethylglycine dehydrogenase DmgdH | |
| LSH36_01373 | 8 | 14 | 0.161418 | putative MobA-related protein | |
| LSH36_01374 | 9 | 13 | 0.093821 | Hemolysin-type calcium-binding protein repeat | |
| LSH36_01375 | 8 | 13 | 0.443321 | RTX toxin |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01373 | ENTSNTHTASED | 27 | 0.047 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01375 | RTXTOXINA | 112 | 6e-27 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| 11 | LSH36_01386 | LSH36_01398 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01386 | 0 | 15 | -3.082130 | ornithine cyclodeaminase ArcB | |
| LSH36_01387 | -1 | 16 | -2.392937 | EF hand | |
| LSH36_01388 | -1 | 16 | -2.345929 | EF hand | |
| LSH36_01389 | -2 | 14 | -2.371170 | vitamin B12-dependent ribonucleotide reductase | |
| LSH36_01391 | -2 | 16 | -1.490889 | *cell division protein ZapA-like protein | |
| LSH36_01392 | -2 | 16 | -1.830051 | hypothetical protein | |
| LSH36_01393 | -2 | 16 | -2.270178 | transketolase TktA | |
| LSH36_01394 | -2 | 19 | -3.757608 | hypothetical protein | |
| LSH36_01395 | -2 | 18 | -3.452589 | putative protein in bacteria | |
| LSH36_01396 | 0 | 19 | -3.251178 | glyceraldehyde-3-phosphate dehydrogenase 2 | |
| LSH36_01397 | -1 | 20 | -4.033200 | hypothetical protein | |
| LSH36_01398 | -1 | 19 | -3.295656 | phosphopantetheine adenylyltransferase CoaA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01392 | cloacin | 29 | 0.007 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01398 | LPSBIOSNTHSS | 184 | 1e-62 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
| 12 | LSH36_01427 | LSH36_01436 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01427 | 2 | 23 | 0.739898 | acyl carrier protein AcpP | |
| LSH36_01428 | 2 | 23 | 0.910812 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | |
| LSH36_01429 | 2 | 21 | 1.671511 | malonyl CoA-acyl carrier protein transacylase | |
| LSH36_01430 | 0 | 17 | 1.134631 | hypothetical protein | |
| LSH36_01431 | 2 | 19 | 0.342904 | 30S ribosomal protein S6 | |
| LSH36_01432 | 3 | 17 | 0.558169 | 30S ribosomal protein S18 | |
| LSH36_01433 | 2 | 16 | 0.509344 | 50S ribosomal protein L9 | |
| LSH36_01434 | 1 | 12 | 0.390883 | methionine gamma-lyase MdeA | |
| LSH36_01435 | 2 | 14 | -0.558116 | transglycosylase-like protein | |
| LSH36_01436 | 4 | 16 | -1.056434 | trigger factor Tig |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01428 | DHBDHDRGNASE | 136 | 2e-41 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 13 | LSH36_01489 | LSH36_01494 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01489 | 0 | 16 | 3.316133 | Phytoene/squalene synthetase | |
| LSH36_01490 | 0 | 15 | 3.001403 | 2-isopropylmalate synthase/homocitrate | |
| LSH36_01491 | 0 | 15 | 3.082453 | cysteinyl-tRNA synthetase CysS | |
| LSH36_01492 | 1 | 17 | 3.481411 | putative aspartate aminotransferase | |
| LSH36_01493 | -1 | 18 | 3.515026 | hypothetical protein | |
| LSH36_01494 | 0 | 17 | 3.626276 | trimethylamine methyltransferase MttB |
| 14 | LSH36_01507 | LSH36_01559 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01507 | 2 | 14 | -0.921792 | hypothetical protein | |
| LSH36_01510 | 1 | 13 | -0.940976 | **TfoX | |
| LSH36_01511 | 1 | 12 | -0.917665 | nucleoside diphosphate kinase Ndk | |
| LSH36_01512 | 1 | 11 | -0.753049 | putative bicyclomycin resistance protein | |
| LSH36_01513 | 2 | 15 | -0.881404 | ATPase component of ABC transporter with | |
| LSH36_01514 | -1 | 18 | -2.914409 | membrane protein, MarC family | |
| LSH36_01515 | 0 | 18 | -1.849072 | clan AA aspartic protease family protein | |
| LSH36_01516 | 0 | 21 | -2.523736 | tRNA (guanine-N(1)-)-methyltransferase TrmD | |
| LSH36_01517 | 0 | 23 | -4.183169 | 50S ribosomal protein L19 | |
| LSH36_01518 | 0 | 21 | -4.734279 | 50S ribosomal protein L31 | |
| LSH36_01520 | -1 | 22 | -4.779451 | *RTX toxin | |
| LSH36_01521 | -1 | 21 | -4.804602 | yjeF, hydroxyethylthiazole kinase-related | |
| LSH36_01522 | -1 | 21 | -6.566572 | nitrogen regulatory protein P-II | |
| LSH36_01523 | -2 | 21 | -6.136027 | glutamine synthetase GlnA | |
| LSH36_01524 | -1 | 25 | -6.174031 | Transglycosylase SLT domain protein | |
| LSH36_01525 | -1 | 24 | -5.609656 | hypothetical protein | |
| LSH36_01526 | 0 | 22 | -5.676168 | protein DddP (metallopeptidase, family M24), | |
| LSH36_01527 | 0 | 23 | -5.311147 | putative membrane protein | |
| LSH36_01528 | 0 | 23 | -4.886566 | transcriptional regulator, LysR family | |
| LSH36_01529 | 1 | 24 | -4.922889 | hydroxyisourate hydrolase | |
| LSH36_01530 | 1 | 24 | -4.673687 | OHCU decarboxylase domain-containing protein | |
| LSH36_01531 | 1 | 25 | -5.051562 | ureidoglycolate hydrolase AllA | |
| LSH36_01532 | 2 | 26 | -4.852887 | putative purine permease | |
| LSH36_01533 | 3 | 28 | -4.617412 | putative allantoin catabolism protein | |
| LSH36_01534 | 1 | 30 | -4.713417 | putative redox protein, regulator of disulfide | |
| LSH36_01535 | 0 | 33 | -4.851771 | thiol:disulfide interchange protein CcmG | |
| LSH36_01536 | 3 | 34 | -5.319662 | heme exporter protein CcmD | |
| LSH36_01537 | 2 | 29 | -5.673919 | heme exporter protein C | |
| LSH36_01538 | 0 | 29 | -5.364915 | heme exporter protein B | |
| LSH36_01539 | -1 | 29 | -6.008034 | cytochrome c biogenesis ATP-binding export | |
| LSH36_01540 | 0 | 27 | -5.504452 | putative protein | |
| LSH36_01541 | -1 | 25 | -5.199380 | Sulfite exporter TauE/SafE | |
| LSH36_01542 | -1 | 25 | -4.576937 | protein-export membrane protein SecF | |
| LSH36_01543 | 0 | 24 | -3.608069 | protein-export membrane protein SecD | |
| LSH36_01544 | 0 | 25 | -3.494546 | preprotein translocase YajC-like protein | |
| LSH36_01545 | 0 | 26 | -3.252757 | seryl-tRNA synthetase SerS | |
| LSH36_01546 | -1 | 23 | -3.584860 | hypothetical protein | |
| LSH36_01547 | -1 | 23 | -3.788963 | GTP-binding protein EngA | |
| LSH36_01548 | 0 | 23 | -3.845559 | putative quinoprotein | |
| LSH36_01549 | -1 | 23 | -4.209396 | putative protein in bacteria | |
| LSH36_01550 | 0 | 23 | -4.429398 | putative efflux transporter, RND family, MFP | |
| LSH36_01551 | 0 | 21 | -4.472733 | multidrug resistance protein MdtC | |
| LSH36_01552 | 1 | 20 | -4.370474 | ABC transporter, ATP-binding protein | |
| LSH36_01553 | 1 | 19 | -4.164269 | LysM domain protein | |
| LSH36_01554 | 0 | 20 | -4.457322 | LOG family protein ORF6 in fasciation locus | |
| LSH36_01555 | 2 | 20 | -4.556418 | protein RarD | |
| LSH36_01556 | 0 | 20 | -4.790530 | putative arginine-tRNA-protein transferase | |
| LSH36_01557 | 0 | 19 | -3.888369 | acetolactate synthase isozyme 3 large subunit | |
| LSH36_01558 | -1 | 20 | -3.906982 | acetolactate synthase isozyme 3 small subunit | |
| LSH36_01559 | -1 | 18 | -3.742069 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01512 | TCRTETA | 78 | 6e-18 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01515 | 60KDINNERMP | 28 | 0.029 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01530 | INVEPROTEIN | 29 | 0.038 | Salmonella/Shigella invasion protein E (InvE) signat... | |
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01539 | PF05272 | 35 | 2e-04 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01542 | SECFTRNLCASE | 348 | e-122 | Bacterial translocase SecF protein signature. | |
>SECFTRNLCASE#Bacterial translocase SecF protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01543 | SECFTRNLCASE | 100 | 4e-25 | Bacterial translocase SecF protein signature. | |
>SECFTRNLCASE#Bacterial translocase SecF protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01547 | TCRTETOQM | 37 | 2e-04 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01550 | RTXTOXIND | 43 | 2e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01551 | ACRIFLAVINRP | 383 | e-117 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 15 | LSH36_01577 | LSH36_01593 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01577 | -1 | 35 | 3.744070 | putative phage cell wall peptidase, NlpC/P60 | |
| LSH36_01578 | -2 | 33 | 3.049012 | hypothetical protein | |
| LSH36_01579 | -1 | 34 | 3.065138 | putative gene transfer agent protein | |
| LSH36_01580 | 0 | 32 | 3.350567 | putative gene transfer agent tail tape measure | |
| LSH36_01581 | 0 | 33 | 2.778306 | gene transfer agent (GTA) protein | |
| LSH36_01582 | -1 | 24 | 2.747309 | hypothetical protein | |
| LSH36_01583 | -2 | 26 | 2.746919 | putative gene transfer agent major tail protein | |
| LSH36_01584 | -2 | 28 | 3.252863 | putative gene transfer agent protein | |
| LSH36_01585 | -1 | 29 | 3.620504 | putative gene transfer agent head-tail adaptor | |
| LSH36_01586 | -1 | 29 | 4.074815 | putative gene transfer agent protein | |
| LSH36_01587 | -1 | 28 | 4.271450 | gene transfer agent major capsid protein | |
| LSH36_01588 | 1 | 32 | 4.520521 | putative phage prohead protease | |
| LSH36_01589 | 1 | 31 | 4.662658 | hypothetical protein | |
| LSH36_01590 | 2 | 30 | 5.269186 | putative gene transfer agent portal protein | |
| LSH36_01591 | 1 | 30 | 4.623018 | putative gene transfer agent large terminase | |
| LSH36_01592 | 0 | 33 | 3.198011 | hypothetical protein | |
| LSH36_01593 | 0 | 34 | 3.002287 | putative phospholipase / carboxylesterase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01589 | OMADHESIN | 29 | 0.003 | Yersinia outer membrane adhesin signature. | |
>OMADHESIN#Yersinia outer membrane adhesin signature. | |||||
| 16 | LSH36_01642 | LSH36_01650 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01642 | 1 | 20 | -3.019150 | dnaK suppressor protein DksA | |
| LSH36_01643 | 0 | 22 | -3.010549 | MoxR-like ATPase | |
| LSH36_01644 | 0 | 23 | -3.257857 | Mn-dependent hydrolase SoxB | |
| LSH36_01645 | 1 | 22 | -3.131203 | diheme cytochrome c | |
| LSH36_01646 | 1 | 23 | -3.707971 | sulfur oxidation protein SoxZ | |
| LSH36_01647 | 1 | 22 | -3.428714 | sulfur oxidation protein SoxY | |
| LSH36_01648 | 1 | 15 | -2.367101 | cytochrome c SoxX | |
| LSH36_01649 | 1 | 16 | -2.390379 | thioredoxin SoxW | |
| LSH36_01650 | 2 | 18 | -2.475554 | ccdA-like protein SoxV |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01643 | HTHFIS | 29 | 0.032 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01648 | TACYTOLYSIN | 29 | 0.009 | Bacterial thiol-activated pore-forming cytolysin sig... | |
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin | |||||
| 17 | LSH36_01679 | LSH36_01710 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01679 | 2 | 13 | 0.739044 | DNA repair protein RecN | |
| LSH36_01680 | 1 | 13 | 0.203319 | putative outer membrane assembly lipoprotein | |
| LSH36_01681 | 2 | 14 | 0.826025 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine | |
| LSH36_01682 | 0 | 13 | 0.662328 | cell division protein FtsZ | |
| LSH36_01683 | 0 | 13 | 0.807853 | putative transcriptional regulator | |
| LSH36_01684 | 2 | 19 | 1.006130 | hypothetical protein | |
| LSH36_01685 | 2 | 20 | 1.434690 | celldivision protein FtsA | |
| LSH36_01686 | 0 | 23 | 1.303513 | putative cell division protein FtsQ | |
| LSH36_01687 | 1 | 24 | 0.607056 | D-alanine--D-alanine ligase Ddl | |
| LSH36_01688 | 1 | 16 | 0.624158 | UDP-N-acetylenolpyruvoylglucosamine reductase | |
| LSH36_01689 | 0 | 14 | 1.078410 | hypothetical protein | |
| LSH36_01690 | -1 | 14 | 1.737404 | UDP-N-acetylmuramate--L-alanine ligase MurC | |
| LSH36_01691 | -2 | 17 | 2.822717 | UDP-N-acetylglucosamine--N-acetylmuramyl- | |
| LSH36_01692 | -2 | 25 | 2.545220 | cell division protein ftsW | |
| LSH36_01693 | -1 | 33 | 3.570151 | putative protein YhiN | |
| LSH36_01694 | -1 | 29 | 4.218216 | putative HTH-type transcriptional regulator | |
| LSH36_01695 | 0 | 29 | 3.771566 | 2-amino-3-ketobutyrate coenzyme A ligase Kbl | |
| LSH36_01696 | 0 | 29 | 3.471119 | cysteine synthase CysK | |
| LSH36_01697 | 3 | 17 | 2.078713 | Threonine dehydrogenase | |
| LSH36_01698 | 3 | 23 | 3.432268 | Cytochrome c, mono- and diheme variants | |
| LSH36_01699 | 1 | 22 | 2.573488 | Cytochrome c, mono- and diheme variants | |
| LSH36_01700 | 0 | 22 | 3.072619 | putative domain 1 | |
| LSH36_01701 | -1 | 24 | 2.215969 | hypothetical protein | |
| LSH36_01702 | -1 | 23 | 1.878889 | malate/L-lactate dehydrogenase-like protein | |
| LSH36_01703 | -2 | 16 | 1.620489 | lipoprotein-releasing system ATP-binding protein | |
| LSH36_01704 | -2 | 14 | 1.544549 | lipoprotein-releasing system transmembrane | |
| LSH36_01705 | -1 | 15 | 1.672702 | hypothetical protein | |
| LSH36_01706 | 0 | 17 | 1.089682 | prolyl-tRNA synthetase ProS | |
| LSH36_01707 | 2 | 19 | 1.042509 | Secreted and surface protein | |
| LSH36_01708 | 2 | 18 | 0.528490 | putative permease | |
| LSH36_01709 | 2 | 14 | -0.395047 | DnaA regulatory inactivator Hda | |
| LSH36_01710 | 2 | 11 | -0.976808 | Polyphosphate kinase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01679 | CHANLCOLICIN | 36 | 5e-04 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01682 | IGASERPTASE | 39 | 4e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01685 | SHAPEPROTEIN | 56 | 1e-10 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| 18 | LSH36_01829 | LSH36_01847 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01829 | 2 | 26 | -1.036557 | octanoyltransferase LipB | |
| LSH36_01830 | 2 | 24 | -1.087762 | cytochrome c | |
| LSH36_01831 | 2 | 18 | -1.337503 | hypothetical protein | |
| LSH36_01832 | 0 | 17 | -0.875949 | hypothetical protein | |
| LSH36_01833 | 0 | 17 | -0.814334 | cytochrome c oxidase subunit 1-beta | |
| LSH36_01834 | -1 | 14 | -0.222868 | hypothetical protein | |
| LSH36_01835 | -1 | 15 | 1.111229 | Integral membrane protein | |
| LSH36_01836 | 0 | 17 | 1.626943 | hypothetical protein | |
| LSH36_01837 | -1 | 16 | 1.888082 | putative lysyl-tRNA synthetase | |
| LSH36_01838 | 0 | 18 | 3.228456 | Tellurite resistance protein | |
| LSH36_01839 | 1 | 18 | 2.992250 | L,D-transpeptidase catalytic domain | |
| LSH36_01840 | 1 | 18 | 3.178277 | putative D-alanyl-D-alanine carboxypeptidase | |
| LSH36_01841 | 0 | 22 | 1.878119 | putative nicotinate-nucleotide | |
| LSH36_01842 | 1 | 23 | 0.925592 | ABC transporter, ATP-binding protein | |
| LSH36_01843 | 0 | 17 | -0.174715 | putative thioredoxin | |
| LSH36_01845 | 0 | 22 | -1.108096 | cold shock protein | |
| LSH36_01846 | 1 | 24 | 0.873780 | hypothetical protein | |
| LSH36_01847 | 2 | 21 | 3.069922 | putative endoribonuclease |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01836 | PF07675 | 31 | 0.001 | Cleaved Adhesin | |
>PF07675#Cleaved Adhesin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01841 | LPSBIOSNTHSS | 38 | 9e-06 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01842 | PF05272 | 31 | 0.013 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| 19 | LSH36_01871 | LSH36_01886 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01871 | 0 | 24 | 3.957104 | rod shape-determining protein rodA | |
| LSH36_01872 | 0 | 22 | 4.448823 | putative glyoxylate/hydroxypyruvate reductase A | |
| LSH36_01873 | 0 | 24 | 4.126215 | transcriptional regulator, TetR family | |
| LSH36_01874 | 0 | 25 | 4.062755 | hypothetical protein | |
| LSH36_01875 | -1 | 24 | 3.179608 | homoserine dehydrogenase Hom | |
| LSH36_01876 | 0 | 24 | 2.506922 | single-stranded-DNA-specific exonuclease RecJ | |
| LSH36_01878 | 1 | 24 | 0.631013 | *peptide methionine sulfoxide reductase MsrB | |
| LSH36_01879 | -1 | 25 | 0.206818 | peptide methionine sulfoxide reductase MsrA | |
| LSH36_01880 | 0 | 25 | 1.416995 | putative phytanoyl-CoA dioxygenase | |
| LSH36_01881 | 0 | 22 | 1.777507 | putative NUDIX hydrolase | |
| LSH36_01882 | -1 | 20 | 2.527987 | putative protein in bacteria | |
| LSH36_01883 | -2 | 20 | 2.617038 | short-chain dehydrogenases/reductase | |
| LSH36_01884 | -2 | 20 | 3.322464 | aspartokinase LysC | |
| LSH36_01885 | -1 | 23 | 3.811421 | phosphoenolpyruvate-protein phosphotransferase | |
| LSH36_01886 | -1 | 21 | 3.758243 | EcsC protein family protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01873 | HTHTETR | 68 | 3e-16 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01883 | DHBDHDRGNASE | 74 | 4e-18 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01885 | PHPHTRNFRASE | 484 | e-166 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01886 | TETREPRESSOR | 28 | 0.050 | Tetracycline repressor protein signature. | |
>TETREPRESSOR#Tetracycline repressor protein signature. | |||||
| 20 | LSH36_01905 | LSH36_01918 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01905 | 0 | 17 | -3.412287 | putative manganese-dependent inorganic | |
| LSH36_01906 | -1 | 19 | -2.839755 | hypothetical protein | |
| LSH36_01907 | -1 | 18 | -2.944919 | putative hydrolase, HAD superfamily | |
| LSH36_01908 | -2 | 19 | -3.655637 | maoC like domain-containing protein | |
| LSH36_01909 | -3 | 18 | -3.159062 | riboflavin biosynthesis protein RibF | |
| LSH36_01910 | -2 | 17 | -3.263595 | putative protein | |
| LSH36_01911 | -1 | 18 | -3.362620 | low specificity L-threonine aldolase LtaE | |
| LSH36_01912 | -1 | 17 | -2.622218 | putative DNA-3-methyladenine glycosylase 1 | |
| LSH36_01913 | -1 | 17 | -2.168316 | EAL domain-containing protein | |
| LSH36_01914 | 0 | 15 | -0.361150 | acetyl-CoA acetyltransferase PhaA | |
| LSH36_01915 | -2 | 14 | 1.938114 | acetoacetyl-CoA reductase PhaB | |
| LSH36_01916 | -1 | 16 | 2.931491 | putative small protein | |
| LSH36_01917 | -1 | 15 | 3.590808 | putative O-methyltransferase | |
| LSH36_01918 | 0 | 21 | 3.698369 | Domain protein of unknown function |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01915 | DHBDHDRGNASE | 116 | 8e-34 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 21 | LSH36_01970 | LSH36_02134 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01970 | 2 | 16 | -0.521629 | putative protein | |
| LSH36_01972 | 3 | 18 | -0.726586 | *putative proline racemase | |
| LSH36_01973 | 3 | 21 | -0.102934 | Site-specific recombinase XerD | |
| LSH36_01974 | 2 | 20 | 0.070239 | acyl-CoA dehydrogenase AcdA | |
| LSH36_01975 | 4 | 23 | -1.184424 | putative CoA-transferase | |
| LSH36_01976 | 6 | 27 | -3.408327 | transcriptional regulator, LysR family | |
| LSH36_01977 | 9 | 29 | -5.832256 | tyrosine recombinase XerD | |
| LSH36_01978 | 8 | 29 | -6.886114 | hypothetical protein | |
| LSH36_01979 | 5 | 25 | -5.906927 | hypothetical protein | |
| LSH36_01980 | 4 | 22 | -2.947737 | hypothetical protein | |
| LSH36_01981 | 5 | 20 | -2.052950 | hypothetical protein | |
| LSH36_01982 | 5 | 20 | -0.337063 | hypothetical protein | |
| LSH36_01983 | 6 | 19 | 1.265408 | hypothetical protein | |
| LSH36_01984 | 5 | 21 | 1.576252 | Various environmental stresses-induced protein | |
| LSH36_01985 | 5 | 21 | 1.105148 | putative formiminoglutamate deiminase | |
| LSH36_01986 | 4 | 21 | 0.176434 | imidazolonepropionase HutI | |
| LSH36_01987 | 3 | 20 | -0.025479 | histidine ammonia-lyase | |
| LSH36_01988 | 4 | 20 | -1.617865 | N-formylglutamate deformylase HutG | |
| LSH36_01989 | 3 | 21 | -2.443188 | urocanate hydratase HutU | |
| LSH36_01990 | 4 | 25 | -4.857573 | HTH-type transcriptional regulator, GntR family | |
| LSH36_01991 | 6 | 20 | -4.863299 | glutathione transport system permease protein | |
| LSH36_01992 | 12 | 26 | -5.370218 | hypothetical protein | |
| LSH36_01993 | 11 | 24 | -4.985525 | hypothetical protein | |
| LSH36_01994 | 9 | 24 | -4.989658 | hypothetical protein | |
| LSH36_01995 | 9 | 24 | -4.756040 | hypothetical protein | |
| LSH36_01996 | 7 | 22 | -3.195287 | replication factor C small subunit 2 | |
| LSH36_01997 | 7 | 26 | -2.677812 | hypothetical protein | |
| LSH36_01998 | 1 | 17 | 1.010184 | hypothetical protein | |
| LSH36_01999 | 3 | 16 | 1.796107 | hypothetical protein | |
| LSH36_02000 | 4 | 17 | 1.341553 | hypothetical protein | |
| LSH36_02001 | 5 | 17 | 1.575152 | putative protein in bacteria | |
| LSH36_02002 | 5 | 16 | 1.251237 | hypothetical protein | |
| LSH36_02003 | 5 | 16 | 1.202342 | lead, cadmium, zinc and mercury-transporting | |
| LSH36_02004 | 6 | 16 | -0.966960 | putative protein in bacteria | |
| LSH36_02005 | 5 | 17 | -0.415424 | lipoprotein signal peptidase | |
| LSH36_02006 | 5 | 17 | 0.692758 | putative divalent heavy-metal cations | |
| LSH36_02007 | 5 | 17 | 0.531518 | putative metal-binding protein | |
| LSH36_02008 | 5 | 19 | 0.939499 | putative protein SCO1/SenC/PrrC | |
| LSH36_02009 | 6 | 21 | 0.871905 | putative protein in bacteria | |
| LSH36_02010 | 7 | 22 | 1.083115 | Protein-disulfide isomerase | |
| LSH36_02011 | 7 | 23 | -0.033013 | Disulfide bond formation protein DsbB | |
| LSH36_02012 | 7 | 22 | -0.462031 | putative protein SCO1/SenC/PrrC | |
| LSH36_02013 | 7 | 22 | -0.654395 | transcriptional regulator, MerR family | |
| LSH36_02014 | 6 | 21 | -1.816398 | Transglutaminase-like enzyme, putative cysteine | |
| LSH36_02015 | 3 | 19 | -3.823811 | cation diffusion facilitator family transporter | |
| LSH36_02016 | 2 | 24 | -5.945648 | Phospholipid methyltransferase | |
| LSH36_02017 | 3 | 27 | -6.075105 | Membrane transport protein MerF | |
| LSH36_02018 | 5 | 30 | -7.505081 | putative mercuric resistance operon regulatory | |
| LSH36_02019 | 8 | 25 | -5.950029 | hypothetical protein | |
| LSH36_02020 | 8 | 24 | -4.917457 | hypothetical protein | |
| LSH36_02021 | 3 | 19 | -1.043824 | hypothetical protein | |
| LSH36_02022 | 3 | 17 | -0.502040 | hypothetical protein | |
| LSH36_02023 | 2 | 17 | -0.627854 | hypothetical protein | |
| LSH36_02024 | 3 | 17 | -0.480850 | Site-specific recombinase XerD | |
| LSH36_02025 | 4 | 20 | -0.044485 | hypothetical protein | |
| LSH36_02026 | 4 | 20 | 0.160025 | integral membrane protein, AcrB/AcrD/AcrF | |
| LSH36_02027 | 3 | 23 | 0.332267 | putative secretion protein | |
| LSH36_02028 | 4 | 18 | 1.048809 | Site-specific recombinase XerC | |
| LSH36_02029 | 5 | 18 | 1.622078 | hypothetical protein | |
| LSH36_02030 | 4 | 21 | 1.411234 | Cytochrome c553 | |
| LSH36_02031 | 6 | 21 | 1.151169 | putative copper resistance protein CopC | |
| LSH36_02032 | 6 | 22 | 1.005997 | Copper resistance protein D | |
| LSH36_02033 | 5 | 20 | 0.271331 | putative multicopper oxidase | |
| LSH36_02034 | 1 | 22 | -2.420159 | Cytochrome c, mono- and diheme variant | |
| LSH36_02035 | 2 | 20 | -2.963358 | transcriptional activator FtrB | |
| LSH36_02036 | 4 | 17 | -3.195287 | hypothetical protein | |
| LSH36_02037 | 5 | 20 | -4.852439 | putative glutathione-dependent | |
| LSH36_02038 | 6 | 20 | -6.069707 | tyrosine recombinase XerD | |
| LSH36_02039 | 6 | 18 | -6.578397 | hypothetical protein | |
| LSH36_02040 | 7 | 22 | -5.647868 | replication factor C small subunit | |
| LSH36_02041 | 10 | 23 | -5.617784 | hypothetical protein | |
| LSH36_02042 | 11 | 27 | -6.087404 | hypothetical protein | |
| LSH36_02043 | 13 | 32 | -4.384778 | hypothetical protein | |
| LSH36_02044 | 11 | 32 | -3.742180 | hypothetical protein | |
| LSH36_02045 | 6 | 24 | -0.702708 | hypothetical protein | |
| LSH36_02046 | 6 | 23 | 0.457011 | hypothetical protein | |
| LSH36_02047 | 4 | 24 | 1.480987 | hypothetical protein | |
| LSH36_02048 | 4 | 25 | 2.302810 | hypothetical protein | |
| LSH36_02049 | 5 | 24 | 3.090568 | pyridoxamine 5'-phosphate oxidase-like protein | |
| LSH36_02050 | 4 | 26 | 3.696610 | putative crotonobetaine/carnitine-CoA ligase | |
| LSH36_02051 | 4 | 26 | 3.524847 | Nitronate monooxygenase | |
| LSH36_02052 | 5 | 27 | 3.064489 | enoyl-CoA hydratase/isomerase | |
| LSH36_02053 | 6 | 29 | 3.774079 | thioesterase domain-containing protein | |
| LSH36_02054 | 5 | 30 | 3.345872 | putative acyl-CoA dehydrogenase | |
| LSH36_02055 | 6 | 31 | 3.055880 | putative acyl-CoA dehydrogenase | |
| LSH36_02056 | 5 | 30 | 3.021191 | 3-ketoacyl-CoA thiolase FadA | |
| LSH36_02057 | 5 | 30 | 2.483509 | putative fatty acid oxidation complex subunit | |
| LSH36_02058 | 7 | 30 | 1.909834 | transcriptional regulator, IclR family | |
| LSH36_02059 | 5 | 25 | -0.412901 | TRAP transporter, subunit DctM | |
| LSH36_02060 | 4 | 22 | -1.454441 | TRAP-type C4-dicarboxylate transport system, | |
| LSH36_02061 | 2 | 18 | -0.611920 | TRAP transporter, subunit DctP | |
| LSH36_02062 | 1 | 16 | -0.660725 | hypothetical protein | |
| LSH36_02063 | 2 | 17 | -0.136728 | hypothetical protein | |
| LSH36_02064 | 5 | 23 | 1.682544 | Site-specific recombinase XerD | |
| LSH36_02065 | 7 | 29 | 2.850156 | hypothetical protein | |
| LSH36_02066 | 6 | 29 | 2.590416 | 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic | |
| LSH36_02067 | 5 | 30 | 2.069748 | phenylacetic acid degradation protein PaaD | |
| LSH36_02068 | 6 | 28 | 1.636062 | Cupin domain protein | |
| LSH36_02069 | 5 | 27 | 1.661382 | sulfatase | |
| LSH36_02070 | 4 | 25 | 0.826025 | TRAP transporter, subunit DctM | |
| LSH36_02071 | 3 | 22 | 0.676808 | TRAP transporter, subunit DctQ | |
| LSH36_02072 | 3 | 20 | 0.734037 | TRAP transporter, subunit DctP | |
| LSH36_02073 | 3 | 21 | 1.229899 | sulfatase | |
| LSH36_02074 | 3 | 23 | 1.273108 | vanillate O-demthylase oxidoreductase-like | |
| LSH36_02075 | -1 | 18 | 0.932977 | sorbitol dehydrogenase PolS | |
| LSH36_02076 | -2 | 18 | 0.142411 | transcriptional regulator, LysR family | |
| LSH36_02077 | -2 | 17 | -1.628624 | succinate-semialdehyde dehdyrogenase GabD | |
| LSH36_02078 | 3 | 25 | -3.864195 | Transposase | |
| LSH36_02079 | 7 | 28 | -5.765399 | hypothetical protein | |
| LSH36_02080 | 9 | 30 | -5.656981 | tyrosine recombinase XerD | |
| LSH36_02081 | 5 | 28 | -6.814334 | hypothetical protein | |
| LSH36_02082 | 6 | 26 | -6.149476 | hypothetical protein | |
| LSH36_02083 | 7 | 25 | -5.322481 | hypothetical protein | |
| LSH36_02084 | 8 | 26 | -4.302288 | hypothetical protein | |
| LSH36_02085 | 5 | 26 | -4.225915 | hypothetical protein | |
| LSH36_02086 | 3 | 18 | -2.275660 | hypothetical protein | |
| LSH36_02087 | 3 | 19 | -1.305433 | hypothetical protein | |
| LSH36_02088 | 1 | 19 | -0.476636 | hypothetical protein | |
| LSH36_02089 | 3 | 18 | -0.316275 | hypothetical protein | |
| LSH36_02090 | 4 | 17 | -0.302389 | putative phage integrase | |
| LSH36_02091 | 4 | 21 | 0.061569 | creatinase | |
| LSH36_02092 | 4 | 23 | -0.268964 | transcriptional regulator, AraC family | |
| LSH36_02093 | 4 | 27 | 0.076103 | tRNA-specific adenosine deaminase | |
| LSH36_02094 | 3 | 26 | 0.006069 | polysaccharide deacetylase family protein, | |
| LSH36_02095 | 3 | 26 | -0.388107 | ABC transporter ATP-binding protein | |
| LSH36_02096 | 3 | 27 | -0.477441 | putative spermidine/putrescine transport system | |
| LSH36_02097 | 3 | 25 | -0.569851 | putrescine transport system permease protein | |
| LSH36_02098 | 3 | 21 | -0.880988 | Spermidine/putrescine-binding periplasmic | |
| LSH36_02099 | 4 | 16 | -1.732835 | putative transcriptional regulator, LysR type | |
| LSH36_02100 | 6 | 17 | -2.299624 | ribose-phosphate pyrophosphokinase Prs | |
| LSH36_02101 | 5 | 16 | -2.116055 | adenine phosphoribosyltransferase Apt | |
| LSH36_02102 | 4 | 16 | -1.993500 | membrane complex biogenesis protein, BtpA | |
| LSH36_02103 | 5 | 16 | -1.833118 | putative protein | |
| LSH36_02104 | 4 | 17 | -1.893806 | allophanate hydrolase, subunit 2 | |
| LSH36_02105 | 1 | 18 | -2.160366 | allophanate hydrolase, subunit 1 | |
| LSH36_02106 | 0 | 21 | -2.178960 | TRAP dicarboxylate transporter, DctM subunit | |
| LSH36_02107 | 1 | 19 | -2.481676 | TRAP-type mannitol/chloroaromatic compound | |
| LSH36_02108 | 2 | 21 | -3.061066 | putative extracellular solute-binding protein | |
| LSH36_02109 | 2 | 21 | -3.812076 | hypothetical protein | |
| LSH36_02110 | 1 | 21 | -3.351872 | transcriptional regulator, LysR family | |
| LSH36_02111 | 4 | 21 | -2.449002 | (S)-mandelate dehydrogenase MdlB | |
| LSH36_02112 | 4 | 17 | -2.369006 | putative sulfopyruvate decarboxylase subunit | |
| LSH36_02113 | 4 | 19 | -2.557130 | putative sulfopyruvate decarboxylase subunit | |
| LSH36_02114 | 3 | 19 | -2.250251 | universal stress protein | |
| LSH36_02115 | 2 | 18 | -1.524257 | putative zinc-binding alcohol dehydrogenase | |
| LSH36_02116 | 1 | 19 | -2.101018 | Dehydrogenase with variable specificity | |
| LSH36_02117 | 1 | 18 | -2.547426 | histidinol dehydrogenase HisD | |
| LSH36_02118 | 0 | 18 | -2.850994 | TRAP transporter, subunit DctM | |
| LSH36_02119 | 1 | 16 | -2.822681 | TRAP transporter, subunit DctQ | |
| LSH36_02120 | 1 | 17 | -3.268845 | TRAP transporter, subunit DctP | |
| LSH36_02121 | 0 | 19 | -4.527486 | hypothetical protein | |
| LSH36_02122 | 1 | 20 | -4.196982 | putative transcriptional regulator, lacI family | |
| LSH36_02123 | 3 | 20 | -4.085891 | 30S ribosomal protein S21 | |
| LSH36_02124 | 2 | 19 | -3.130523 | Calcineurin-like phosphoesterase | |
| LSH36_02125 | 3 | 18 | -2.883426 | putative exopolysaccharide biosynthesis | |
| LSH36_02126 | 1 | 19 | -2.160508 | Transposase | |
| LSH36_02127 | 3 | 16 | -2.744107 | putative transposase | |
| LSH36_02128 | 3 | 17 | -2.486395 | hypothetical protein | |
| LSH36_02129 | 1 | 15 | -3.314604 | hypothetical protein | |
| LSH36_02130 | 1 | 16 | -4.202009 | hypothetical protein | |
| LSH36_02131 | -1 | 15 | -4.308641 | putative sulfopyruvate decarboxylase subunit | |
| LSH36_02132 | -2 | 16 | -3.920585 | putative sulfopyruvate decarboxylase subunit | |
| LSH36_02133 | 0 | 14 | -3.618567 | hypothetical protein | |
| LSH36_02134 | -1 | 14 | -3.353263 | putative dioxygenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02018 | HELNAPAPROT | 33 | 2e-04 | Helicobacter neutrophil-activating protein A family ... | |
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02026 | ACRIFLAVINRP | 412 | e-129 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02035 | BACINVASINC | 28 | 0.042 | Salmonella/Shigella invasin protein C signature. | |
>BACINVASINC#Salmonella/Shigella invasin protein C signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02070 | RTXTOXIND | 31 | 0.007 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02075 | DHBDHDRGNASE | 43 | 6e-07 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02076 | SECA | 32 | 0.003 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02088 | PHPHTRNFRASE | 26 | 0.036 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02097 | ACRIFLAVINRP | 29 | 0.020 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02116 | DHBDHDRGNASE | 90 | 6e-24 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 22 | LSH36_02206 | LSH36_02236 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02206 | 1 | 22 | 3.159378 | putative nitrilotriacetate monooxygenase | |
| LSH36_02207 | 0 | 22 | 3.187389 | isoquinoline 1-oxidoreductase subunit beta | |
| LSH36_02208 | 0 | 20 | 2.844437 | isoquinoline 1-oxidoreductase subunit alpha | |
| LSH36_02209 | -1 | 18 | 2.023721 | putative cysteine desulfurase | |
| LSH36_02210 | -1 | 19 | 1.653351 | serine hydroxymethyltransferase GlyA | |
| LSH36_02211 | 0 | 21 | 2.037320 | putative ATP-NAD kinase | |
| LSH36_02212 | -1 | 19 | 3.009383 | hypothetical protein | |
| LSH36_02213 | -1 | 17 | 3.350827 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | |
| LSH36_02214 | -1 | 17 | 2.987634 | propionate-CoA ligase PrpE | |
| LSH36_02215 | -1 | 16 | 3.994952 | NAD-dependent malic enzyme | |
| LSH36_02216 | 0 | 27 | 4.931930 | cytidine deaminase Cdd | |
| LSH36_02217 | 0 | 27 | 4.898950 | thymidine phosphorylase DeoA | |
| LSH36_02218 | 0 | 17 | 3.416043 | phosphopentomutase DeoB | |
| LSH36_02219 | 0 | 17 | 2.718256 | uracil phosphoribosyltransferase Upp | |
| LSH36_02220 | -1 | 12 | 2.021047 | Sporulation related protein domain protein | |
| LSH36_02221 | 2 | 16 | 3.699410 | hypothetical protein | |
| LSH36_02222 | 2 | 17 | 3.259029 | putative esterase | |
| LSH36_02223 | 2 | 19 | 2.850399 | hypothetical protein | |
| LSH36_02224 | 2 | 18 | 2.269934 | putative 3-hydroxybutyryl-CoA dehydrogenase | |
| LSH36_02225 | 1 | 19 | 2.261062 | transcriptional regulator, LysR family | |
| LSH36_02226 | 1 | 19 | 2.805013 | putative chromosome segregation protein SMC | |
| LSH36_02227 | 4 | 18 | -0.424616 | glutathione transferase-like protein | |
| LSH36_02228 | 1 | 14 | -0.097761 | hypothetical protein | |
| LSH36_02229 | 1 | 12 | -0.422178 | cystathionine beta-lyase PatB | |
| LSH36_02230 | 1 | 21 | 0.293315 | peptide deformylase Def | |
| LSH36_02231 | -2 | 18 | 0.510538 | peptide deformylase Def | |
| LSH36_02232 | -2 | 18 | 0.219257 | peptide deformylase Def | |
| LSH36_02233 | -1 | 16 | -0.499049 | methionyl-tRNA formyltransferase Fmt | |
| LSH36_02234 | 1 | 20 | -0.890963 | hypothetical protein | |
| LSH36_02235 | 3 | 20 | -0.503464 | Transglycosylase associated protein | |
| LSH36_02236 | 2 | 21 | -0.896235 | putative membrane protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02214 | BINARYTOXINA | 32 | 0.006 | Clostridial binary toxin A signature. | |
>BINARYTOXINA#Clostridial binary toxin A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02220 | IGASERPTASE | 35 | 0.001 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02226 | GPOSANCHOR | 57 | 3e-10 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02236 | RTXTOXINA | 30 | 0.007 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| 23 | LSH36_02307 | LSH36_02324 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02307 | 0 | 21 | -3.122079 | hypothetical protein | |
| LSH36_02308 | 1 | 21 | -3.719713 | ABC-type Fe3+ transport system, periplasmic | |
| LSH36_02309 | 1 | 18 | -2.619243 | signal transduction histidine kinase | |
| LSH36_02310 | 1 | 18 | -2.585461 | two-component system response regulator | |
| LSH36_02311 | 1 | 17 | -2.382160 | putative protein in bacteria | |
| LSH36_02312 | 0 | 13 | -1.939757 | Tripartite tricarboxylate transporter TctB | |
| LSH36_02313 | -1 | 12 | -1.832751 | putative integral membrane protein | |
| LSH36_02314 | 0 | 13 | -1.700186 | N-formylglutamate amidohydrolase | |
| LSH36_02316 | 1 | 17 | -3.026025 | *50S ribosomal protein L36 | |
| LSH36_02317 | 1 | 17 | -3.057154 | hypothetical protein | |
| LSH36_02318 | 0 | 17 | -3.053563 | phenylacetate-CoA ligase PaaK | |
| LSH36_02319 | 0 | 19 | -3.988938 | high-affinity branched-chain amino acid | |
| LSH36_02320 | 0 | 16 | -4.469438 | putative branched-chain amino acid transport | |
| LSH36_02321 | 0 | 13 | -4.502727 | high-affinity branched-chain amino acid | |
| LSH36_02322 | 1 | 14 | -4.089662 | hypothetical protein | |
| LSH36_02323 | 0 | 14 | -3.549377 | high-affinity branched-chain amino acid | |
| LSH36_02324 | 1 | 15 | -3.219906 | high-affinity branched-chain amino acid |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02308 | BLACTAMASEA | 30 | 0.013 | Beta-lactamase class A signature. | |
>BLACTAMASEA#Beta-lactamase class A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02310 | HTHFIS | 79 | 2e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 24 | LSH36_02407 | LSH36_02436 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02407 | 2 | 17 | 1.425322 | hypothetical protein | |
| LSH36_02408 | -1 | 16 | 1.369753 | carbonic anhydrase CynT | |
| LSH36_02409 | -1 | 19 | 1.622612 | hypothetical protein | |
| LSH36_02410 | -1 | 28 | 0.707494 | hypothetical protein | |
| LSH36_02411 | 0 | 33 | 1.768962 | hypothetical protein | |
| LSH36_02412 | 1 | 34 | 1.882251 | aspartate-semialdehyde dehydrogenase Asd | |
| LSH36_02413 | 3 | 38 | 2.759088 | transporter, MFS family | |
| LSH36_02414 | 2 | 38 | 2.768368 | short chain dehydrogenase | |
| LSH36_02415 | 1 | 36 | 2.398687 | hypothetical protein | |
| LSH36_02416 | 0 | 34 | 2.111958 | aldehyde dehydrogenase | |
| LSH36_02417 | 0 | 33 | 0.997526 | glutathione import ATP-binding protein GsiA | |
| LSH36_02418 | 1 | 28 | -0.325233 | glutathione transport system permease protein | |
| LSH36_02419 | 1 | 26 | -0.699626 | glutathione transport system permease protein | |
| LSH36_02420 | 1 | 16 | -0.564805 | glutathione-binding protein GsiB | |
| LSH36_02421 | 2 | 12 | -0.020684 | acetylornithine deacetylase ArgE | |
| LSH36_02422 | 1 | 12 | 0.387832 | ribulose-phosphate 3-epimerase Rpe | |
| LSH36_02423 | 0 | 13 | 1.143991 | putative 6-phospho-5-dehydro-2-deoxy-D-gluconate | |
| LSH36_02424 | -1 | 19 | 2.327717 | Fructose-1,6-bisphosphatase class 1 | |
| LSH36_02425 | 0 | 24 | 2.693044 | medium-chain-fatty-acid--CoA ligase AlkK | |
| LSH36_02426 | 1 | 26 | 3.544582 | Dehydrogenase with variable specificity | |
| LSH36_02427 | -1 | 26 | 3.457627 | maoC like domain-containing protein | |
| LSH36_02428 | -2 | 25 | 3.164596 | putative phosphoglycerate mutase family protein | |
| LSH36_02429 | -2 | 12 | 3.420263 | putative aminoglycoside phosphotransferase | |
| LSH36_02430 | -2 | 11 | 2.768247 | thioesterase domain-containing protein | |
| LSH36_02431 | -2 | 14 | 2.054141 | putative NADP-dependent oxidoreductase | |
| LSH36_02432 | -1 | 15 | 1.495111 | putative D-alanyl-D-alanine carboxypeptidase | |
| LSH36_02433 | -1 | 20 | 0.711191 | cytochrome oxidase maturation protein CcoS | |
| LSH36_02434 | -1 | 19 | 0.765961 | heavy metal translocating ATPase CcoI | |
| LSH36_02435 | 3 | 19 | -1.139010 | protein CcoH | |
| LSH36_02436 | 2 | 19 | -0.503082 | cytochrome c accessory protein CcoG |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02413 | TCRTETB | 29 | 0.038 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02414 | DHBDHDRGNASE | 139 | 2e-42 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02423 | MYCMG045 | 30 | 0.017 | Hypothetical mycoplasma lipoprotein (MG045) signature. | |
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02426 | DHBDHDRGNASE | 98 | 2e-26 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02435 | TYPE3IMRPROT | 28 | 0.040 | Type III secretion system inner membrane R protein ... | |
>TYPE3IMRPROT#Type III secretion system inner membrane R protein | |||||
| 25 | LSH36_02449 | LSH36_02456 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02449 | 0 | 17 | 3.060810 | prephenate dehydratase | |
| LSH36_02450 | 0 | 17 | 3.509565 | ribose-5-phosphate isomerase B | |
| LSH36_02451 | 0 | 17 | 3.405863 | putative protein SoxH | |
| LSH36_02452 | -2 | 16 | 2.760140 | redox-active disulfide protein 2 | |
| LSH36_02453 | -2 | 18 | 3.172667 | putative permease | |
| LSH36_02454 | 0 | 25 | 3.482327 | putative transcriptional regulator, ArsR family | |
| LSH36_02455 | 0 | 29 | 3.885099 | CAAX protease self-immunity | |
| LSH36_02456 | 0 | 23 | 3.637271 | CAAX protease self-immunity |
| 26 | LSH36_02490 | LSH36_02498 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02490 | 0 | 18 | 3.790209 | phosphatase-like protein | |
| LSH36_02491 | 0 | 23 | 3.074554 | putative metalloprotease | |
| LSH36_02492 | 3 | 29 | 3.124923 | DNA polymerase III subunit tau | |
| LSH36_02493 | 6 | 14 | 0.833022 | hypothetical protein | |
| LSH36_02494 | 6 | 14 | 0.468986 | putative taurine catabolism dioxygenase | |
| LSH36_02495 | 6 | 14 | 0.292726 | NUDIX hydrolase | |
| LSH36_02496 | 5 | 13 | 0.356438 | DNA-binding protein, YbaB/EbfC family | |
| LSH36_02497 | 5 | 13 | 0.539540 | recombination protein RecR | |
| LSH36_02498 | 5 | 14 | 0.345226 | Hemolysin-type calcium-binding protein repeat |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02498 | RTXTOXINA | 111 | 1e-26 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| 27 | LSH36_02597 | LSH36_02606 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02597 | 2 | 20 | -1.522985 | hypothetical protein | |
| LSH36_02598 | 2 | 20 | -1.591335 | Protein of unknown function/Peptidase G2, IMC | |
| LSH36_02599 | 2 | 21 | -1.911621 | hypothetical protein | |
| LSH36_02600 | 2 | 19 | -1.093429 | Hemolysin-type calcium-binding protein repeat | |
| LSH36_02601 | 2 | 18 | 0.223517 | Glycosyltransferase involved in cell wall | |
| LSH36_02602 | 2 | 20 | 0.779176 | ABC transporter, ATP-binding protein | |
| LSH36_02603 | 2 | 23 | 2.059229 | Transposase | |
| LSH36_02604 | 2 | 26 | 2.968315 | putative transposase | |
| LSH36_02606 | 1 | 23 | 3.081864 | *diaminopimelate epimerase DapF |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02599 | CABNDNGRPT | 38 | 1e-04 | NodO calcium binding signature. | |
>CABNDNGRPT#NodO calcium binding signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02600 | CABNDNGRPT | 84 | 4e-19 | NodO calcium binding signature. | |
>CABNDNGRPT#NodO calcium binding signature. | |||||
| 28 | LSH36_02640 | LSH36_02665 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02640 | 2 | 16 | 2.455538 | putative integral membrane protein | |
| LSH36_02641 | 3 | 19 | 2.721773 | Soluble lytic murein transglycosylase | |
| LSH36_02642 | 1 | 18 | 2.578796 | dihydrodipicolinate synthase DapA | |
| LSH36_02643 | 1 | 19 | 2.727728 | LamB/YcsF family protein | |
| LSH36_02644 | 0 | 20 | 3.048393 | allophanate hydrolase, subunit 2 | |
| LSH36_02645 | 1 | 25 | 3.189298 | allophanate hydrolase, subunit 1 | |
| LSH36_02646 | 0 | 27 | 2.097543 | putative ABC transporter inner membrane | |
| LSH36_02647 | -2 | 19 | 1.793375 | ABC transporter ATP-binding protein | |
| LSH36_02648 | -2 | 15 | 1.295573 | ABC-type tungstate transport system, permease | |
| LSH36_02649 | -1 | 16 | 1.305902 | holin-like protein | |
| LSH36_02650 | -1 | 15 | 1.939566 | Inner membrane protein YohK | |
| LSH36_02651 | 0 | 15 | 1.778562 | hypothetical protein | |
| LSH36_02652 | -1 | 19 | 2.974601 | tRNA pseudouridine synthase B | |
| LSH36_02653 | 1 | 24 | 4.136933 | putative periplasmic protein | |
| LSH36_02654 | 0 | 27 | 4.353365 | ribosome-binding factor A | |
| LSH36_02655 | -1 | 27 | 4.023044 | dihydrodipicolinate reductase DapB | |
| LSH36_02656 | -1 | 26 | 3.875870 | hypothetical protein | |
| LSH36_02657 | -2 | 27 | 3.696402 | putative ribosomal RNA small subunit | |
| LSH36_02658 | -1 | 29 | 3.406646 | putative heparinase II/III-like protein | |
| LSH36_02659 | -1 | 18 | 2.187245 | bifunctional purine biosynthesis protein PurH | |
| LSH36_02660 | -1 | 14 | 2.074268 | putative lipoprotein signal peptidase | |
| LSH36_02661 | -1 | 17 | 2.509431 | Beta-barrel assembly machine subunit BamF | |
| LSH36_02662 | -1 | 18 | 2.401073 | peptidase, M16 family | |
| LSH36_02663 | -1 | 16 | 2.531406 | peptidase, M16 family | |
| LSH36_02664 | -1 | 14 | 2.595677 | aldehyde dehydrogenase | |
| LSH36_02665 | 2 | 18 | 3.005110 | putative deoxyribose-phosphate aldolase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02647 | PF05272 | 29 | 0.014 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02662 | PF06057 | 29 | 0.021 | Type IV secretory pathway VirJ component | |
>PF06057#Type IV secretory pathway VirJ component | |||||
| 29 | LSH36_02729 | LSH36_02739 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02729 | 2 | 17 | 1.044997 | hypothetical protein | |
| LSH36_02730 | 2 | 14 | 1.038465 | SsrA-binding protein SmpB | |
| LSH36_02731 | 3 | 14 | 1.066007 | HemY-like protein | |
| LSH36_02732 | 2 | 13 | 1.817054 | hypothetical protein | |
| LSH36_02733 | 0 | 16 | 0.405501 | Uroporphyrinogen-III synthase | |
| LSH36_02734 | 0 | 21 | 0.290523 | putative O-sialoglycoprotein endopeptidase | |
| LSH36_02735 | -2 | 21 | -1.745108 | glycerol-3-phosphate dehydrogenase GpsA | |
| LSH36_02736 | -2 | 16 | -3.897946 | protein YciI | |
| LSH36_02737 | -1 | 15 | -4.112790 | putative protein | |
| LSH36_02738 | -2 | 14 | -3.596828 | hypothetical protein | |
| LSH36_02739 | -2 | 15 | -3.009122 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02732 | PYOCINKILLER | 32 | 0.003 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| 30 | LSH36_02749 | LSH36_02763 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02749 | 2 | 22 | -0.076461 | PAS fold protein | |
| LSH36_02750 | 2 | 22 | 0.289992 | hypothetical protein | |
| LSH36_02751 | 2 | 18 | 0.085205 | putative phosphotransferase | |
| LSH36_02752 | 2 | 19 | 0.034247 | Nucleoside-diphosphate-sugar pyrophosphorylase | |
| LSH36_02753 | 2 | 19 | 0.036294 | double strand break repair protein AddB | |
| LSH36_02754 | 1 | 21 | 0.012826 | double strand break repair helicase AddA | |
| LSH36_02755 | 0 | 15 | 0.976658 | thioredoxin TrxA | |
| LSH36_02756 | 0 | 14 | 0.935003 | hypothetical protein | |
| LSH36_02757 | 1 | 20 | 2.046115 | ATP-dependent protease HslV | |
| LSH36_02758 | 2 | 20 | 2.389060 | ATP-dependent hsl protease ATP-binding subunit | |
| LSH36_02759 | 3 | 20 | 2.581251 | sulfoacetaldehyde acetyltransferase Xsc | |
| LSH36_02760 | 4 | 24 | 2.672445 | succinylglutamate desuccinylase / aspartoacylase | |
| LSH36_02761 | 4 | 22 | 2.354610 | transcriptional regulator, AsnC family | |
| LSH36_02762 | 4 | 21 | 1.791901 | putative alcohol dehydrogenase | |
| LSH36_02763 | 2 | 19 | 0.513963 | pyrroline-5-carboxylate reductase ProC |
| 31 | LSH36_02773 | LSH36_02788 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02773 | 1 | 17 | -3.152667 | glucose-1-phosphate thymidylyltransferase RfbA | |
| LSH36_02774 | 0 | 19 | -3.598440 | putative protein in bacteria | |
| LSH36_02775 | 0 | 19 | -3.162819 | putative membrane-bound lytic murein | |
| LSH36_02776 | -1 | 19 | -3.893852 | putative transporter protein | |
| LSH36_02777 | -1 | 21 | -4.031420 | putative protein FxsA | |
| LSH36_02778 | -1 | 22 | -4.802705 | protein-export protein SecB | |
| LSH36_02779 | -1 | 18 | -4.582972 | DNA polymerase III subunit epsilon | |
| LSH36_02780 | -1 | 22 | -3.991769 | dephospho-CoA kinase CoaE | |
| LSH36_02781 | 0 | 23 | -4.667594 | shikimate dehydrogenase AroE | |
| LSH36_02782 | 1 | 22 | -5.014543 | Maf-like protein | |
| LSH36_02783 | 2 | 23 | -5.218548 | putative membrane protein | |
| LSH36_02784 | 2 | 23 | -4.706194 | hypothetical protein | |
| LSH36_02785 | 1 | 27 | -4.853172 | tRNA modification GTPase MnmE | |
| LSH36_02786 | 1 | 23 | -4.880378 | glucose-inhibited division protein A | |
| LSH36_02787 | 1 | 21 | -4.321915 | ribosomal RNA small subunit methyltransferase G | |
| LSH36_02788 | 0 | 19 | -3.367682 | ATPase involved in chromosome partitioning |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02778 | SECBCHAPRONE | 135 | 4e-43 | Bacterial protein-transport SecB chaperone protein ... | |
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein | |||||
| 32 | LSH36_02801 | LSH36_02900 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02801 | 2 | 13 | 0.059791 | hypothetical protein | |
| LSH36_02802 | 1 | 14 | 0.484595 | glutamate synthase [NADPH] small chain | |
| LSH36_02803 | 1 | 17 | 1.204272 | undecaprenyl-diphosphatase UppP | |
| LSH36_02804 | 3 | 21 | 2.998855 | putative NAD dependent epimerase | |
| LSH36_02806 | 4 | 27 | 4.215897 | *phage integrase-like protein | |
| LSH36_02807 | 4 | 25 | 4.265031 | hypothetical protein | |
| LSH36_02808 | 5 | 24 | 3.554180 | enoyl-CoA hydratase/isomerase | |
| LSH36_02809 | 2 | 19 | 0.487291 | aldehyde dehydrogenase | |
| LSH36_02810 | 2 | 18 | -0.610605 | long-chain-fatty-acid- CoA ligase IcfB | |
| LSH36_02811 | 2 | 18 | -2.724993 | Glycine cleavage system T protein | |
| LSH36_02812 | 5 | 19 | -4.818338 | Transcriptional regulator | |
| LSH36_02813 | 8 | 24 | -3.506554 | hypothetical protein | |
| LSH36_02814 | 5 | 21 | -2.264253 | hypothetical protein | |
| LSH36_02815 | 5 | 24 | 1.894676 | hypothetical protein | |
| LSH36_02816 | 4 | 23 | 1.963443 | hypothetical protein | |
| LSH36_02817 | 2 | 20 | 1.406513 | hypothetical protein | |
| LSH36_02818 | 0 | 20 | 1.258495 | site-specific tyrosine recombinase XerD | |
| LSH36_02819 | 2 | 19 | -0.457902 | hypothetical protein | |
| LSH36_02820 | 1 | 19 | -1.246286 | mandelate racemase / muconate lactonizing | |
| LSH36_02821 | 2 | 20 | -1.874113 | histidine transport ATP-binding protein HisP | |
| LSH36_02822 | 2 | 20 | -3.095364 | putative histidine transport system permease | |
| LSH36_02823 | 2 | 20 | -3.894642 | putative histidine transport system permease | |
| LSH36_02824 | 2 | 22 | -4.635350 | putative histidine-binding periplasmic protein | |
| LSH36_02825 | 1 | 22 | -4.652929 | putative HTH-type transcriptional regulator | |
| LSH36_02826 | 0 | 28 | -6.018273 | hypothetical protein | |
| LSH36_02827 | 1 | 26 | -6.765055 | HxlR-like helix-turn-helix | |
| LSH36_02828 | 1 | 25 | -6.171477 | hypothetical protein | |
| LSH36_02829 | 1 | 28 | -7.314436 | putative membrane protein | |
| LSH36_02830 | 4 | 32 | -9.425971 | hypothetical protein | |
| LSH36_02831 | 4 | 40 | -11.291150 | hypothetical protein | |
| LSH36_02832 | 3 | 40 | -10.471452 | hypothetical protein | |
| LSH36_02833 | 2 | 30 | -6.414814 | hypothetical protein | |
| LSH36_02834 | 7 | 27 | 0.373429 | hypothetical protein | |
| LSH36_02835 | 6 | 27 | 2.181157 | hypothetical protein | |
| LSH36_02836 | 5 | 27 | 3.138542 | hypothetical protein | |
| LSH36_02837 | 5 | 27 | 3.843748 | hypothetical protein | |
| LSH36_02838 | 5 | 26 | 4.091813 | Transcriptional regulator | |
| LSH36_02839 | 5 | 27 | 4.107768 | xanthine dehydrogenase, molybdenum binding | |
| LSH36_02840 | 4 | 27 | 3.522134 | Aerobic-type carbon monoxide dehydrogenase, | |
| LSH36_02841 | 4 | 27 | 2.401154 | Aerobic-type carbon monoxide dehydrogenase, | |
| LSH36_02842 | 5 | 27 | 2.550868 | Acyl-CoA synthetase (AMP-forming)/AMP-acid | |
| LSH36_02843 | 5 | 28 | 2.578467 | enoyl-CoA hydratase/isomerase | |
| LSH36_02844 | 5 | 28 | 2.258008 | putative receptor family ligand-binding protein | |
| LSH36_02845 | 4 | 23 | 1.313325 | amino acid/amide ABC transporter membrane | |
| LSH36_02846 | 2 | 20 | 0.904633 | ABC-type branched-chain amino acid transport | |
| LSH36_02847 | 1 | 19 | -2.843193 | branched-chain amino acid transport system | |
| LSH36_02848 | 0 | 26 | -5.914638 | high-affinity branched-chain amino acid | |
| LSH36_02849 | 1 | 31 | -8.510563 | Proline iminopeptidase | |
| LSH36_02850 | 3 | 34 | -10.758159 | putative transposase | |
| LSH36_02851 | 3 | 41 | -12.343044 | Transposase | |
| LSH36_02852 | 2 | 40 | -12.102374 | hypothetical protein | |
| LSH36_02853 | 1 | 36 | -10.246399 | methyltransferase, FkbM family | |
| LSH36_02854 | -1 | 30 | -8.649822 | hypothetical protein | |
| LSH36_02855 | -1 | 27 | -7.236801 | Glycosyltransferase family 25 (LPS biosynthesis | |
| LSH36_02856 | 0 | 24 | -6.293670 | Glycosyl transferase family 2 | |
| LSH36_02857 | 0 | 24 | -4.764320 | putative 3'-5'-exonuclease | |
| LSH36_02858 | 1 | 16 | -3.840437 | Lipopolysaccharide-assembly, LptC-related | |
| LSH36_02859 | -1 | 13 | -3.748997 | putative protein in bacteria | |
| LSH36_02860 | -1 | 12 | -3.893797 | lipopolysaccharide export system ATP-binding | |
| LSH36_02861 | -1 | 15 | -3.776595 | putative sigma(54) modulation protein | |
| LSH36_02862 | 0 | 15 | -3.000938 | nitrogen regulatory protein PtsN | |
| LSH36_02863 | 0 | 16 | -3.259709 | hypothetical protein | |
| LSH36_02864 | 0 | 17 | -2.973366 | Core-2/I-Branching enzyme | |
| LSH36_02865 | -1 | 18 | -2.663435 | Glycosyl transferase family 2 | |
| LSH36_02866 | -1 | 16 | -2.465608 | glycosyltransferase, family | |
| LSH36_02867 | -1 | 17 | -1.727929 | UDP-galactose 4-epimerase | |
| LSH36_02868 | 1 | 15 | -2.450728 | UTP--glucose-1-phosphate uridylyltransferase | |
| LSH36_02869 | 0 | 14 | -1.600127 | putative glycosyl transferase | |
| LSH36_02870 | 1 | 18 | -2.207453 | 3'(2'),5'-bisphosphate nucleotidase CysQ | |
| LSH36_02871 | 2 | 16 | -2.787756 | ABC-type polysaccharide/polyol phosphate export | |
| LSH36_02872 | 2 | 17 | -2.717832 | alpha-ketoglutarate-dependent dioxygenase AlkB | |
| LSH36_02873 | 2 | 15 | -3.458779 | chaperone protein DnaK | |
| LSH36_02874 | 1 | 15 | -3.845019 | chaperone protein DnaJ | |
| LSH36_02875 | 2 | 16 | -4.350443 | DNA repair protein RadC | |
| LSH36_02876 | 1 | 17 | -4.502074 | phosphate ABC transporter substrate-binding | |
| LSH36_02877 | 1 | 17 | -4.553599 | hypothetical protein | |
| LSH36_02878 | 2 | 21 | -4.193751 | protein translocase subunit SecA | |
| LSH36_02879 | 3 | 27 | -4.177823 | putative peptidylprolyl isomerase | |
| LSH36_02880 | 3 | 27 | -3.846037 | arginine biosynthesis bifunctional protein ArgJ | |
| LSH36_02881 | 4 | 29 | -4.076940 | putative mutator MutT protein | |
| LSH36_02882 | 3 | 26 | -4.049018 | hypothetical protein | |
| LSH36_02883 | 2 | 23 | -4.259824 | translation initiation factor IF-2 | |
| LSH36_02884 | 0 | 20 | -5.001130 | hypothetical protein | |
| LSH36_02885 | 0 | 21 | -5.375873 | transcription elongation protein NusA | |
| LSH36_02886 | -1 | 24 | -6.226549 | hypothetical protein | |
| LSH36_02887 | -2 | 24 | -6.201278 | proline iminopeptidase Pip | |
| LSH36_02888 | -2 | 26 | -6.503866 | 3-demethylubiquinone-9 3-methyltransferase UbiG | |
| LSH36_02889 | -1 | 21 | -5.900058 | putative HTH-type transcriptional regulator, | |
| LSH36_02890 | -1 | 23 | -6.025975 | putative carbon-nitrogen hydrolase | |
| LSH36_02891 | 0 | 22 | -5.947593 | glutaredoxin GrxC | |
| LSH36_02892 | 0 | 23 | -5.686399 | phosphoribosyl transferase-like protein | |
| LSH36_02893 | 0 | 22 | -5.938391 | biotin biosynthesis protein BioC | |
| LSH36_02894 | 0 | 23 | -6.243388 | ferrochelatase HemH | |
| LSH36_02895 | 0 | 23 | -6.399599 | hypothetical protein | |
| LSH36_02896 | 0 | 21 | -6.285532 | putative protein in bacteria | |
| LSH36_02897 | 0 | 21 | -5.680985 | Cysteine-rich secretory protein family protein | |
| LSH36_02898 | 0 | 23 | -4.761057 | putative protein in bacteria | |
| LSH36_02899 | 1 | 17 | -3.913558 | putative histidine-containing phosphotransfer | |
| LSH36_02900 | 0 | 16 | -3.186369 | putative response regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02819 | SACTRNSFRASE | 28 | 0.021 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02820 | HTHFIS | 29 | 0.024 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02845 | PF04335 | 30 | 0.010 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02848 | PF05272 | 30 | 0.013 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02867 | NUCEPIMERASE | 147 | 6e-44 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02873 | SHAPEPROTEIN | 136 | 3e-37 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02876 | OMPADOMAIN | 58 | 4e-11 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02878 | SECA | 1195 | 0.0 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02883 | TCRTETOQM | 65 | 8e-13 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02891 | PF08280 | 28 | 0.004 | M protein trans-acting positive regulator | |
>PF08280#M protein trans-acting positive regulator | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02900 | HTHFIS | 83 | 3e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 33 | LSH36_02968 | LSH36_02978 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02968 | 2 | 15 | -2.114571 | leucyl-tRNA synthetase LeuS | |
| LSH36_02969 | 6 | 25 | -4.317906 | putative glycosyl transferase | |
| LSH36_02970 | 9 | 37 | -6.354915 | Domain protein of unknown function | |
| LSH36_02971 | 11 | 42 | -7.647029 | hypothetical protein | |
| LSH36_02972 | 13 | 43 | -8.060711 | porin | |
| LSH36_02973 | 12 | 37 | -10.839936 | hypothetical protein | |
| LSH36_02974 | 13 | 41 | -9.551016 | addiction module antitoxin, RelB/DinJ family | |
| LSH36_02975 | 7 | 32 | -7.081934 | hypothetical protein | |
| LSH36_02976 | 4 | 27 | -5.851648 | hypothetical protein | |
| LSH36_02977 | 2 | 25 | -5.493601 | site-specific tyrosine recombinase XerC | |
| LSH36_02978 | 0 | 24 | -4.003912 | putative phage integrase, catalytic core |
| 34 | LSH36_00754 | LSH36_00759 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00754 | 2 | 21 | -0.804942 | integration host factor subunit beta | |
| LSH36_00755 | 1 | 22 | -0.990561 | hypothetical protein | |
| LSH36_00756 | 1 | 18 | -0.385638 | N-(5'-phosphoribosyl)anthranilate isomerase | |
| LSH36_00757 | 2 | 14 | -0.745178 | tryptophan synthase beta chain | |
| LSH36_00758 | 2 | 18 | -0.114910 | hypothetical protein | |
| LSH36_00759 | 0 | 17 | 0.651715 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00754 | DNABINDINGHU | 110 | 1e-35 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00755 | BCTERIALGSPG | 28 | 0.008 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00758 | RTXTOXINA | 30 | 0.004 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00759 | cloacin | 33 | 4e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| 35 | LSH36_00918 | LSH36_00925 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_00918 | 0 | 21 | -1.012891 | Bacterial Ig-like domain protein (group | |
| LSH36_00919 | 2 | 28 | -2.491568 | SapC | |
| LSH36_00920 | 1 | 28 | -1.817044 | Outer membrane efflux protein BepC precursor | |
| LSH36_00921 | 1 | 27 | -1.469810 | putative ATP-binding/permease fusion ABC | |
| LSH36_00922 | -1 | 25 | 0.132061 | type I secretion membrane fusion protein, HlyD | |
| LSH36_00923 | 0 | 16 | 3.265355 | tRNA-dihydrouridine synthase A | |
| LSH36_00924 | 0 | 17 | 3.983645 | putative permease | |
| LSH36_00925 | -1 | 19 | 4.620023 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00918 | RTXTOXINA | 64 | 6e-12 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00919 | CARBMTKINASE | 29 | 0.016 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00921 | ACRIFLAVINRP | 31 | 0.021 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00922 | RTXTOXIND | 227 | 1e-71 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_00925 | PF09025 | 29 | 0.009 | YopR Core | |
>PF09025#YopR Core | |||||
| 36 | LSH36_01198 | LSH36_01204 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01198 | -3 | 20 | -1.676441 | tRNA-dihydrouridine synthase DusB | |
| LSH36_01199 | -2 | 20 | -1.853922 | Signal transduction histidine kinase, nitrogen | |
| LSH36_01200 | -2 | 20 | -2.015642 | nitrogen regulation protein NtrC | |
| LSH36_01201 | -2 | 18 | -2.567764 | nitrogen regulation protein NtrY | |
| LSH36_01202 | -2 | 19 | -2.409966 | nitrogen assimilation regulatory protein NtrX | |
| LSH36_01203 | -3 | 13 | -1.394360 | hypothetical protein | |
| LSH36_01204 | -3 | 13 | -1.157933 | trk system potassium uptake protein TrkA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01198 | PYOCINKILLER | 28 | 0.049 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01199 | PF06580 | 35 | 4e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01200 | HTHFIS | 387 | e-133 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01201 | PF06580 | 31 | 0.015 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01202 | HTHFIS | 406 | e-140 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01204 | NUCEPIMERASE | 31 | 0.009 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 37 | LSH36_01883 | LSH36_01889 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_01883 | -2 | 20 | 2.617038 | short-chain dehydrogenases/reductase | |
| LSH36_01884 | -2 | 20 | 3.322464 | aspartokinase LysC | |
| LSH36_01885 | -1 | 23 | 3.811421 | phosphoenolpyruvate-protein phosphotransferase | |
| LSH36_01886 | -1 | 21 | 3.758243 | EcsC protein family protein | |
| LSH36_01887 | 0 | 26 | 2.647053 | acetyltransferase domain-containing protein | |
| LSH36_01888 | 0 | 26 | 1.368483 | protein/domain protein typically associated with | |
| LSH36_01889 | 1 | 25 | 1.027534 | putative MFS-type transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01883 | DHBDHDRGNASE | 74 | 4e-18 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01885 | PHPHTRNFRASE | 484 | e-166 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01886 | TETREPRESSOR | 28 | 0.050 | Tetracycline repressor protein signature. | |
>TETREPRESSOR#Tetracycline repressor protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01887 | SACTRNSFRASE | 32 | 7e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_01889 | TCRTETA | 32 | 0.003 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 38 | LSH36_02559 | LSH36_02568 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02559 | 0 | 11 | 0.645479 | ABC-type Fe3+-hydroxamate transport system, | |
| LSH36_02560 | 0 | 11 | 0.063294 | Outer membrane cobalamin receptor protein | |
| LSH36_02562 | 0 | 16 | 1.952855 | short-chain dehydrogenase/reductase | |
| LSH36_02563 | 0 | 17 | 2.951490 | histidinol dehydrogenase HisD | |
| LSH36_02564 | 3 | 13 | 2.112049 | putative HTH-type transcriptional regulator, | |
| LSH36_02565 | 2 | 14 | 1.790632 | putative permease | |
| LSH36_02566 | 1 | 16 | 1.441660 | putative short chain dehydrogenase | |
| LSH36_02567 | -2 | 15 | 1.137864 | hypothetical protein | |
| LSH36_02568 | -1 | 13 | 1.028571 | putative MFS-type transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02559 | FERRIBNDNGPP | 30 | 0.008 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02562 | DHBDHDRGNASE | 107 | 4e-30 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02565 | VACCYTOTOXIN | 31 | 0.011 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02566 | DHBDHDRGNASE | 87 | 1e-22 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02568 | TCRTETB | 38 | 6e-05 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 39 | LSH36_02957 | LSH36_02962 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02957 | -2 | 12 | -1.552446 | Signal transduction histidine-protein | |
| LSH36_02958 | -3 | 13 | -0.945615 | two-component signal transduction system, | |
| LSH36_02959 | -2 | 15 | -1.091510 | hypothetical protein | |
| LSH36_02960 | -2 | 14 | -2.709207 | putative purine permease | |
| LSH36_02961 | -2 | 14 | -1.723872 | hypothetical protein | |
| LSH36_02962 | -2 | 13 | -1.447516 | Trypsin-like serine protease, typically |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02957 | RTXTOXIND | 36 | 3e-04 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02958 | HTHFIS | 53 | 2e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02959 | RTXTOXINA | 28 | 0.027 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02962 | V8PROTEASE | 57 | 4e-11 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| 40 | LSH36_02982 | LSH36_02999 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| LSH36_02982 | -1 | 30 | -2.295816 | flagellar hook protein FlgE | |
| LSH36_02983 | -1 | 28 | -1.602083 | flagellar hook-associated protein FlgK | |
| LSH36_02984 | 0 | 33 | -1.564164 | Flagellin | |
| LSH36_02985 | 0 | 32 | -1.001243 | flagellar P-ring protein FlgI | |
| LSH36_02986 | 0 | 29 | -0.860042 | putative protein | |
| LSH36_02987 | 0 | 30 | -0.628356 | putative ATPase | |
| LSH36_02988 | 0 | 28 | -0.901355 | putative protein | |
| LSH36_02989 | 0 | 26 | -1.428108 | double-transmembrane domain protein | |
| LSH36_02990 | 0 | 21 | -1.956660 | putative membrane protein | |
| LSH36_02991 | 3 | 23 | -3.645531 | flagellar biosynthetic protein FliP | |
| LSH36_02992 | 4 | 24 | -4.201144 | flagellar motor switch protein FliN | |
| LSH36_02993 | 3 | 24 | -4.610056 | putative flagellar biosynthesis protein | |
| LSH36_02994 | 4 | 24 | -4.445131 | putative transposase | |
| LSH36_02995 | 3 | 26 | -4.732670 | Transposase | |
| LSH36_02996 | 3 | 27 | -5.248518 | putative flagellin | |
| LSH36_02997 | 1 | 27 | -4.922835 | FlgN-like protein | |
| LSH36_02998 | 1 | 24 | -4.377830 | putative rod-binding protein | |
| LSH36_02999 | 1 | 22 | -4.267367 | putative flagellar hook-length control protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02982 | FLGHOOKAP1 | 37 | 1e-04 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02983 | FLGHOOKAP1 | 88 | 1e-20 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02984 | FLAGELLIN | 30 | 0.021 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02985 | FLGPRINGFLGI | 356 | e-124 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02987 | HTHFIS | 39 | 3e-05 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02991 | FLGBIOSNFLIP | 212 | 3e-71 | Escherichia coli: Flagellar biosynthetic protein Fl... | |
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02992 | FLGMOTORFLIN | 59 | 8e-15 | Flagellar motor switch protein FliN signature. | |
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02996 | FLAGELLIN | 67 | 6e-15 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02998 | FLGFLGJ | 27 | 0.010 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| LSH36_02999 | 60KDINNERMP | 30 | 0.028 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||