PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
GenomeNC_002570.txtThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Input genome features
ORFs: 4171; Mean %GC: 44.32; Mean %GC bias: 1.54; Mean dinucleotide bias: 3.93; Mean dinucleotide bias deviation: 2.02; Mean codon bias: 0.00; Mean codon bias deviation: 14.04
 
C) Potential GIs and PAIs in NC_002570 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1BH0175BH0187Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH0175018-5.966032hypothetical protein
BH0176-215-4.895034transposase (09)
BH0177-114-4.318902hypothetical protein
BH0178-115-0.339574hypothetical protein
BH0179-1180.944505ABC transporter (ATP-binding protein)
BH0180-1233.393118hypothetical protein
BH0181-1223.172546hypothetical protein
BH0182-1213.726090hypothetical protein
BH0183-1203.2752406-phospho-beta-glucosidase
BH0184-2192.307316hypothetical protein
BH01850182.654071hypothetical protein
BH01861170.823700hypothetical protein
BH0187217-0.031902sorbitol dehydrogenase
2BH0196BH0211Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH01962120.833820ring-oxidation complex protein 1 in the
BH01972141.921278hypothetical protein
BH01981132.249411ring-oxidation complex protein 2 in the
BH01990122.772393ring-oxidation complex protein 3 in the
BH0200-1113.442844hypothetical protein
BH0201-1113.611381enoyl-CoA hydratase
BH0202-1103.323463enoyl-CoA hydratase
BH0203-1102.612860glycine betaine aldehyde dehydrogenase
BH02041142.8265863-hydroxybutyryl-CoA dehydrogenase
BH02052132.532281acetyl-CoA acetyltransferase
BH02062171.378152hypothetical protein
BH02071181.081006RNA-binding protein/enoyl-CoA hydratase
BH02081151.078947hypothetical protein
BH02091180.877246ferredoxin [4Fe-4S]
BH0210018-0.267884hypothetical protein
BH02112180.137183ferripyochelin binding protein
3BH0224BH0332Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH0224215-0.080083transposase (11)
BH0225-213-0.965579hypothetical protein
BH0226-112-0.985569creatinine amidohydrolase
BH0227014-0.237383hypothetical protein
BH0228114-0.242597hypothetical protein
BH0229014-0.442771hypothetical protein
BH02300180.394670hypothetical protein
BH02311141.939189transcriptional regulator of anaerobic genes
BH02322132.844613hypothetical protein
BH02332132.290293hypothetical protein
BH02342132.185079hypothetical protein
BH02351132.417115hypothetical protein
BH02360102.090484hypothetical protein
BH02372120.611472multidrug-efflux transporter
BH0238012-0.565922hypothetical protein
BH0239112-0.885318germination specific N-acetylmuramoyl-L-alanine
BH0240012-0.135384ATP-binding Mrp protein (Mrp/Nbp35 family)
BH0241015-0.936359spore germination protein
BH0242015-0.896169activation of the KinB signalling pathway of
BH02432140.335186hypothetical protein
BH02441140.855361hypothetical protein
BH02450131.280786**transposase (01)
BH02460141.578534hypothetical protein
BH02470141.628113ABC transporter (ATP-binding protein)
BH02480132.115697ABC transporter (ATP-binding protein)
BH02490152.938706ABC transporter (permease)
BH02500163.108525ABC transporter (permease)
BH02510163.653097ABC transporter (substrate-binding protein)
BH02521183.455719urease gamma subunit
BH02530163.707275urease beta subunit
BH02540153.470689urease alpha subunit
BH02550172.299841urease accessory protein
BH02560172.500436urease accessory protein
BH02571161.735520urease accessory protein
BH02582171.284157urease accessory protein
BH02593180.002223hypothetical protein
BH0260317-0.586201hypothetical protein
BH02613150.334159hypothetical protein
BH02621100.723887********hypothetical protein
BH02630101.866024RNA polymerase ECF-type sigma factor
BH02640111.313391hypothetical protein
BH0265-1111.852462hypothetical protein
BH0266-1100.865316hypothetical protein
BH0267-210-0.914711phosphoglucosamine mutase
BH0268-212-2.127529L-glutamine-D-fructose-6-phosphate
BH0269017-5.325613transposase (09)
BH0270-114-4.430947transposase (01)
BH0271-122-7.448875two-component response regulator
BH0272-122-7.444130hypothetical protein
BH0273-123-6.768056ABC transporter (ATP-binding protein)
BH0274021-5.979721hypothetical protein
BH0275117-3.624794transposase (07)
BH0276318-3.669385hypothetical protein
BH0277317-1.596237hypothetical protein
BH0278216-1.403648hypothetical protein
BH0279213-0.269938hypothetical protein
BH0280214-1.612848hypothetical protein
BH0281116-2.567325ABC transporter (ATP-binding protein)
BH0282015-2.789428hypothetical protein
BH0283015-2.904761hypothetical protein
BH0284014-2.692032nicotinate-nucleotide--dimethylbenzimidazolephos
BH0285015-4.557698hypothetical protein
BH0286115-4.016873ABC transporter (ATP-binding protein)
BH0287214-3.834530hypothetical protein
BH0288316-4.272739two-component response regulator
BH0289416-3.841290hypothetical protein
BH0290415-3.461509ABC transporter (ATP-binding protein)
BH0291314-1.343547hypothetical protein
BH0292014-1.520328hypothetical protein
BH0293015-1.622487hypothetical protein
BH0294013-1.220023hypothetical protein
BH0295012-1.747595hypothetical protein
BH0296-113-1.985569PTS system, beta-glucoside-specific enzyme II,
BH0297115-3.785569transcription antiterminator (BigG family)
BH0298-218-2.813734hypothetical protein
BH0299-218-2.879922hypothetical protein
BH0300019-1.236265hypothetical protein
BH0301-116-0.349799hypothetical protein
BH03021170.177042hypothetical protein
BH03032150.507522hypothetical protein
BH0304015-1.886706hypothetical protein
BH0305115-2.607513hypothetical protein
BH0306318-3.169665hypothetical protein
BH0307519-4.039938hypothetical protein
BH0308619-4.459100hypothetical protein
BH0309518-5.032230hypothetical protein
BH0310415-2.696018hypothetical protein
BH0311114-1.780856transposase (04)
BH0312215-2.695413hypothetical protein
BH0313215-3.000882hypothetical protein
BH0314117-3.105048hypothetical protein
BH0315017-3.072693hypothetical protein
BH0316018-3.449609hypothetical protein
BH0317-117-2.923109hypothetical protein
BH0318-117-3.877019hypothetical protein
BH0319018-4.399672hypothetical protein
BH0320017-4.751802hypothetical protein
BH0321016-4.869361hypothetical protein
BH0322320-5.589962aminoglycoside 6-adenylyltransferase
BH0323321-5.847791hypothetical protein
BH0324424-4.470345hypothetical protein
BH0325323-3.671044hypothetical protein
BH0326322-2.898238hypothetical protein
BH0327322-3.032946hypothetical protein
BH0328224-4.050895hypothetical protein
BH0329324-4.116199hypothetical protein
BH0330122-5.345710hypothetical protein
BH0331118-4.135247hypothetical protein
BH0332117-3.612775hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0251adhesinb250.011 Adhesin B signature.
		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 24.8 bits (54), Expect = 0.011

		 Identities = 7/33 (21%), Positives = 17/33 (51%)

		

		Query: 7  KTVFMMAFSLLILAACGEQTAQQQEQSAEQTEV 39

		          + + ++  + + LAAC  Q +  +  S++   V

		Sbjct: 5  RFLVLLLLAFVGLAACSSQKSSTETGSSKLNVV 37
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0254UREASE862e-24 Urea amidohydrolase (urease) protein signature.
		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 86.3 bits (214), Expect = 2e-24

		 Identities = 26/43 (60%), Positives = 39/43 (90%)

		

		Query: 2  KLTRAQHASLYGPTVGDKVRLADTDLLLEIEKDYTVYGDECKF 44

		          +++RA +A+++GPTVGDKVRLADT+L +E+EKD+T +G+E KF

		Sbjct: 4  RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKF 46
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0257TCRTETOQM250.010 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		          signature.

		          Length = 639

		

		 Score = 24.8 bits (54), Expect = 0.010

		 Identities = 12/23 (52%), Positives = 14/23 (60%)

		

		Query: 1  MKPIRIGIGGPVGSGKTHLVEQL 23

		          MK I IG+   V +GKT L E L

		Sbjct: 1  MKIINIGVLAHVDAGKTTLTESL 23
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0271HTHFIS361e-06 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 36.0 bits (83), Expect = 1e-06

		 Identities = 8/41 (19%), Positives = 17/41 (41%)

		

		Query: 3  RILIVEDERSITHTLKKRLEKYGYECHTIEDFKRVLDVFQE 43

		           IL+ +D+ +I   L + L + GY+     +   +      

		Sbjct: 5  TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA 45
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0288HTHFIS318e-05 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 31.0 bits (70), Expect = 8e-05

		 Identities = 8/32 (25%), Positives = 17/32 (53%)

		

		Query: 2  TRIIVVEDDSWMREELIDVLQKEGFEAVAVTD 33

		            I+V +DD+ +R  L   L + G++    ++

		Sbjct: 4  ATILVADDDAAIRTVLNQALSRAGYDVRITSN 35
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0305NUCEPIMERASE331e-05 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 32.8 bits (75), Expect = 1e-05

		 Identities = 12/22 (54%), Positives = 15/22 (68%)

		

		Query: 1  MKLLVTGATGQLGSLVVEALLK 22

		          MK LVTGA G +G  V + LL+

		Sbjct: 1  MKYLVTGAAGFIGFHVSKRLLE 22
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0316DHBDHDRGNASE270.002 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		          signature.

		          Length = 261

		

		 Score = 26.9 bits (59), Expect = 0.002

		 Identities = 12/27 (44%), Positives = 18/27 (66%)

		

		Query: 5  RIVIITGANSGIGKEAAQRFANEGDHV 31

		          +I  ITGA  GIG+  A+  A++G H+

		Sbjct: 9  KIAFITGAAQGIGEAVARTLASQGAHI 35
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0317TETREPRESSOR375e-07 Tetracycline repressor protein signature.
		>TETREPRESSOR#Tetracycline repressor protein signature.

		          Length = 218

		

		 Score = 36.8 bits (85), Expect = 5e-07

		 Identities = 13/33 (39%), Positives = 20/33 (60%)

		

		Query: 6  KFTKEDIIDSAFSIAKTEGIDKITIRKVADHLG 38

		          +  +E +ID+A  +    GID +T RK+A  LG

		Sbjct: 3  RLNRESVIDAALELLNETGIDGLTTRKLAQKLG 35
4BH0342BH0361Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH03422221.760448hypothetical protein
BH03432263.669604hypothetical protein
BH03442275.400679hypothetical protein
BH03451275.890804transcriptional regulator (phage-related)
BH03461286.185077hypothetical protein
BH03471287.042427oligopeptide ABC transporter
BH03480286.889612oligopeptide ABC transporter (permease)
BH03491246.224020oligopeptide ABC transporter (permease)
BH03501225.022084oligopeptide ABC transporter (ATP-binding
BH0351-2193.481384oligopeptide ABC transporter (ATP-binding
BH0352-1163.267774carboxypeptidase G2
BH03530171.584869hypothetical protein
BH03540162.251268hypothetical protein
BH0355-2142.441398hypothetical protein
BH03562101.168839transposase (04)
BH0357291.135643hypothetical protein
BH0358390.949505short-chain fatty acids transporter
BH03594110.555210hypothetical protein
BH0360511-0.128212carbonic anhydrase precursor
BH0361410-0.309544hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0353HTHTETR434e-09 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 42.7 bits (100), Expect = 4e-09

		 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

		

		Query: 1  MAKPN----VVTKEELIEAAKRCIVEKGIHSLTLKSVAEGAGVTQGTV 44

		          MA+        T++ +++ A R   ++G+ S +L  +A+ AGVT+G +

		Sbjct: 1  MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
5BH0444BH0457Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH0444214-2.843075hypothetical protein
BH0445214-3.154748ABC transporter (ATP-binding protein)
BH0446310-3.340461hypothetical protein
BH0447212-3.267286hypothetical protein
BH0448112-3.278365ABC transporter (ATP-binding protein)
BH0449214-3.377491hypothetical protein
BH0450113-3.550076hypothetical protein
BH0451113-3.443321lantibiotic mersacidin transporter system
BH0452114-3.004950lantibiotic mersacidin modifying enzyme
BH0453215-2.352306lantibiotic cytolysin precursor
BH0454114-2.819017lantibiotic mersacidin precursor
BH0455113-2.870025lantibiotic mersacidin modifying enzyme
BH0456220-0.689558hypothetical protein
BH0457320-1.692302hypothetical protein
6BH0669BH0694Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH0669-1143.221480hypothetical protein
BH0670-2143.925268hypothetical protein
BH0671-3143.745530hypothetical protein
BH0672-3143.099945RNA polymerase ECF-type sigma factor
BH0673-2153.354164PTS system, n-acetylglucosamine-specific enzyme
BH06740143.085538hypothetical protein
BH06750133.098108beta-hexosamidase A precursor
BH0676-1143.077275hypothetical protein
BH0677-1131.323300hypothetical protein
BH06780171.304440hypothetical protein
BH0679-1171.495784hypothetical protein
BH0680-1161.544224hypothetical protein
BH0681-1151.348106aldehyde dehydrogenase
BH0682-1181.711178cassette chromosome recombinase B1
BH06830213.538563lipoate-protein ligase
BH06840203.327183prepro-alkaline protease
BH06850192.959754chaperonin
BH06860161.190705chaperonin
BH0687014-0.206238RNA methyltransferase
BH0688-115-2.409281transposase (05)
BH0689014-2.309770transposase (06)
BH0690-113-1.616199transposase (04)
BH0691013-0.994854transposase (15)
BH0692214-0.357549hypothetical protein
BH0693215-0.351729hypothetical protein
BH0694215-0.839068transcriptional regulator (ArsR family)
7BH0740BH0746Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH07402131.089730cytochrome c oxidase subunit II
BH07412141.887995hypothetical protein
BH07421132.620552spore coat protein
BH0743-1143.520604spore coat protein
BH0744-1153.508759cadmium-transporting ATPase
BH07450153.747547magnesium citrate secondary transporter
BH07461143.626922N-ethylammeline chlorohydrolase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH0746UREASE240.018 Urea amidohydrolase (urease) protein signature.
		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 24.3 bits (53), Expect = 0.018

		 Identities = 10/18 (55%), Positives = 13/18 (72%)

		

		Query: 20  IVYGDLLIKDGLICAIGQ 37

		           IV  D+ +KDG I AIG+

		Sbjct: 83  IVKADIGLKDGRIAAIGK 100
8BH0896BH0905Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH0896317-3.061365hypothetical protein
BH0897420-4.085722RNA methyltransferase
BH0898827-6.412919hypothetical protein
BH0899825-6.471680endo-1,4-beta-xylanhydrolase
BH0900723-6.611350transcriptional regulator (enhancement of
BH0901523-4.839915transcriptional regulator
BH0902421-2.981972L-arabinose transport system (permease)
BH0903320-2.237454L-arabinose transport system (permease)
BH0904220-1.269492hypothetical protein
BH0905220-0.549432L-arabinose transport system (sugar-binding
9BH0963BH0976Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH0963019-5.739834hypothetical protein
BH0964022-6.128426hypothetical protein
BH0965-119-4.993059hypothetical protein
BH0966114-3.448573N-acetylmuramoyl-L-alanine amidase (sporulation
BH0967216-4.349255holin protein
BH0968316-4.354744*hypothetical protein
BH0969214-2.775457SNF2 helicase
BH097019-0.220091hypothetical protein
BH0971110-0.358142hypothetical protein
BH0972113-0.250380hypothetical protein
BH0973112-0.202685hypothetical protein
BH0974013-1.188467hypothetical protein
BH0975013-1.223382hypothetical protein
BH0976118-3.536158hypothetical protein
10BH1176BH1184Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH1176220-1.845784hypothetical protein
BH1177018-2.102015protein secretion (post-translocation
BH1178016-4.422147hypothetical protein
BH1179116-5.008072hypothetical protein
BH1180114-4.690605hypothetical protein
BH1181115-3.959005hypothetical protein
BH1182318-4.713341hypothetical protein
BH1183218-4.082378transposase (02)
BH1184114-3.090832hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH1177adhesinb260.006 Adhesin B signature.
		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 25.6 bits (56), Expect = 0.006

		 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

		

		Query: 1  MKKRHLLIAGLACMTILGAC----NNDDAGSSGQAVV 33

		          MKK   L+  L     L AC    ++ + GSS   VV

		Sbjct: 1  MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVV 37
11BH1216BH1229Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH12163121.662897transcriptional regulator
BH12174122.532629NAD biosynthesis
BH12184142.357239L-aspartate oxidase
BH12194161.572141nicotinate-nucleotide pyrophosphorylase
BH12204172.126418quinolinate synthetase
BH12215182.113689hypothetical protein
BH12222161.851618hypothetical protein
BH12231140.334311forespore regulator of the sigma-K checkpoint
BH12241160.471991holliday junction DNA helicase
BH12252150.763710holliday junction DNA helicase (DNA-binding
BH1226113-0.081926hypothetical protein
BH1227013-0.544054S-adenosylmethionine tRNA ribosyltransferase
BH1228113-0.050425tRNA-guanine transglycosylase
BH12292140.089065hypothetical protein
12BH1277BH1309Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH12772160.158909hypothetical protein
BH1278015-0.726268hypothetical protein
BH1279-115-0.0464565'-methylthioadenosine
BH1280-215-0.594622hypothetical protein
BH1281-115-0.157862hypothetical protein
BH1282-115-0.782006hypothetical protein
BH1283-115-1.680013hypothetical protein
BH1284-215-1.869001amino acid carrier protein (sodium/alanine
BH1285116-3.874458RNA polymerase sigma factor (sigma K)
BH1286218-3.724843hypothetical protein
BH1287418-4.949903hypothetical protein
BH1288419-4.621458transcriptional repressor of PBSX genes
BH1289316-2.011210hypothetical protein
BH1290-117-1.683725hypothetical protein
BH1291-219-2.450662hypothetical protein
BH1292-119-3.140285hypothetical protein
BH1293018-2.898402hypothetical protein
BH1294018-3.253920N-acetylmuramoyl-L-alanine amidase (sporulation
BH1295119-3.939372hypothetical protein
BH1296217-4.828079hypothetical protein
BH1297114-3.708431hypothetical protein
BH1298114-1.877989hypothetical protein
BH1299015-1.965132hypothetical protein
BH1300117-1.500038hypothetical protein
BH1301215-0.841549transposase (03)
BH13021150.746275hypothetical protein
BH13031121.064047chitin-binding protein
BH13040120.213204hypothetical protein
BH1305-111-0.172561hypothetical protein
BH1306-112-0.141756catalase
BH1307012-0.050946transposase (01)
BH1308115-1.139780hypothetical protein
BH1309218-1.594329non-specific DNA-binding protein II (HB) (HU)
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH1287STREPTOPAIN260.004 Streptopain (C10) cysteine protease family signature.
		>STREPTOPAIN#Streptopain (C10) cysteine protease family signature.

		          Length = 398

		

		 Score = 26.2 bits (57), Expect = 0.004

		 Identities = 10/31 (32%), Positives = 18/31 (58%)

		

		Query: 2   EHLAIDHVATAFNTMVLYHDFPSHATYDHDF 32

		           +H A   VATA   ++ YH++P+    D+ +

		Sbjct: 186 QHAATGCVATATAQIMKYHNYPNKGLKDYTY 216
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH1309DNABINDINGHU572e-15 Prokaryotic integration host factor signature.
		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score = 57.0 bits (138), Expect = 2e-15

		 Identities = 25/43 (58%), Positives = 32/43 (74%)

		

		Query: 2  NKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQL 44

		          NK DLI  VAE  EL+KKD++ AVDAVF +++  L +G KVQL

		Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQL 45
13BH1437BH1462Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH1437212-0.495457hypothetical protein
BH1438213-1.409545hypothetical protein
BH1439212-1.541124hypothetical protein
BH14401130.213960hypothetical protein
BH14414150.262823hypothetical protein
BH14423170.010447hypothetical protein
BH14432160.335643transcriptional regulator
BH14442160.423313hypothetical protein
BH1445115-0.009650fumarate hydratase
BH1446218-0.729158nucleoside transporter
BH1447219-1.690128hypothetical protein
BH1448017-0.914267peptide methionine sulfoxide reductase
BH1449418-1.420664hypothetical protein
BH1450214-1.778203hypothetical protein
BH1451111-1.148850hypothetical protein
BH1452-111-0.386490hypothetical protein
BH1453-110-0.497123hypothetical protein
BH1454-112-0.967186spore germination protein
BH1455-113-0.884019spore germination protein
BH1456012-0.073425sopre germination protein
BH1457212-0.156127glycine betaine transporter
BH1459317-1.011144hypothetical protein
BH1458216-0.414454hypothetical protein
BH14601161.065117hypothetical protein
BH14610151.714966ABC transporter (substrate-binding protein)
BH14622161.344295ABC transporter (permease)
14BH1583BH1588Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH1583-1113.077988hypothetical protein
BH1584-1113.406983hypothetical protein
BH1585-2124.042020ferric ion ABC transpoter (ferric ion-binding
BH1586-2133.122750ferric ion ABC transpoter (permease)
BH1587-2123.589962iron(III) dicitrate transport system
BH1588-2123.271893cobalamin biosynthesis
15BH1656BH1663Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH16560113.109082chorismate synthase
BH1657-2132.5584493-dehydroquinate synthase
BH1658-1143.364530chorismate mutase
BH1659-1133.460552anthranilate synthase
BH1660-1113.382247anthranilate phosphoribosyltransferase
BH1661-1102.578261indol-3-glycerol phosphate synthase
BH1662-1103.198138phosphoribosyl anthranilate isomerase
BH1663-1123.053610tryptophan synthase (beta subunit)
16BH1806BH1813Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH1806113-3.489208hypothetical protein
BH1807014-3.817110hypothetical protein
BH1808015-4.441601two-component response regulator
BH1809014-5.777235two-component sensor histidine kinase
BH1810015-5.237756D-alanyl-D-alanine carboxypeptidase
BH1811017-5.258499hypothetical protein
BH1812-117-4.894442hypothetical protein
BH1813-216-3.519901hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH1808HTHFIS397e-08 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 39.4 bits (92), Expect = 7e-08

		 Identities = 15/43 (34%), Positives = 21/43 (48%)

		

		Query: 1  MERISILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVI 43

		          M   +ILVADD+  IR ++   L + GY V   S+       I

		Sbjct: 1  MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI 43
17BH1954BH1970Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH1954-114-3.461399hypothetical protein
BH1955-114-3.986755hypothetical protein
BH1956-216-4.381610hypothetical protein
BH1957-118-5.149834hypothetical protein
BH1958-120-6.213589hypothetical protein
BH1959220-5.850434hypothetical protein
BH1960119-5.769174hypothetical protein
BH1961117-3.525573hypothetical protein
BH1962117-3.774775hypothetical protein
BH1963116-3.373537transposase (02)
BH1964116-2.875450hypothetical protein
BH1965115-3.049061transcriptional regulator (TetR/AcrR family)
BH1966014-2.796744metal-tetracycline/H+ antiporter
BH1967-117-4.883654hypothetical protein
BH1968013-3.936696transcriptional regulator
BH1969114-3.516138hypothetical protein
BH1970115-3.630587hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH1965HTHTETR391e-07 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 38.8 bits (90), Expect = 1e-07

		 Identities = 11/37 (29%), Positives = 21/37 (56%)

		

		Query: 8  TSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTL 44

		          T + ++  A+ L S++G +  +  EIA AAG +   +

		Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
18BH2030BH2126Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2030016-4.645511hypothetical protein
BH2031220-5.430013hypothetical protein
BH2032221-5.260273hypothetical protein
BH2033221-5.360424hypothetical protein
BH2034221-4.738749hypothetical protein
BH2035120-4.767123hypothetical protein
BH2036121-4.480969suppressor of the inhibitory activity of the
BH2037120-5.027296hypothetical protein
BH2038120-5.016576hypothetical protein
BH2039219-4.989183hypothetical protein
BH2040119-4.808024hypothetical protein
BH2041119-5.101352hypothetical protein
BH2042119-5.608994hypothetical protein
BH2043118-5.379068hypothetical protein
BH2044218-5.550125hypothetical protein
BH2045218-5.626413hypothetical protein
BH2046119-6.281815hypothetical protein
BH2047220-6.017620hypothetical protein
BH2048321-5.433656hypothetical protein
BH2049018-3.827618hypothetical protein
BH2050014-1.832161hypothetical protein
BH2051013-2.295860hypothetical protein
BH2052114-2.259249hypothetical protein
BH2053115-2.430142hypothetical protein
BH2054015-2.191553unsaturated glucuronyl hydrolase
BH2055219-4.599645hypothetical protein
BH2056023-6.656197hypothetical protein
BH2057020-4.216513alkaline phosphatase
BH2058020-3.772555hypothetical protein
BH2059-216-2.354109hypothetical protein
BH2060011-1.527737hypothetical protein
BH20610130.773123transcriptional regulator (MarR family)
BH20621120.682129hypothetical protein
BH2063114-0.477611hypothetical protein
BH2064212-0.255110cytochrome aa3 quinol oxidase subunit II
BH20650150.618871cytochrome aa3 quinol oxidase subunit I
BH2066-212-0.398306cytochrome aa3 quinol oxidase subunit III
BH2067-111-1.814915cytochrome aa3 quinol oxidase subunit IV
BH2068-110-3.446691hypothetical protein
BH2069012-3.346386hypothetical protein
BH2070012-3.670870transposase (08)
BH2071220-5.741038hypothetical protein
BH2072320-5.507882hypothetical protein
BH2073319-5.177858hypothetical protein
BH2074419-4.435278oligopeptide ABC transporter
BH2075218-3.763995oligopeptide ABC transporter (permease)
BH2076118-3.491813oligopeptide ABC transporter (permease)
BH2077115-3.102599oligopeptide ABC transporter (ATP-binding
BH2078014-2.816170oligopeptide ABC transporter (ATP-binding
BH2079015-3.282884hypothetical protein
BH2080016-2.978959cell wall-associated protease precursor
BH2081316-3.174701hypothetical protein
BH2082416-3.113287hypothetical protein
BH2083019-4.414350transposase (18)
BH2084318-4.449621hypothetical protein
BH2085518-2.369861hypothetical protein
BH2086417-2.125452transcriptional regulator (ArsR family)
BH2087417-2.518024hypothetical protein
BH2088315-2.017315hypothetical protein
BH2089316-2.219777hypothetical protein
BH2090213-2.937366glucose dehydrogenase-B
BH2091013-3.069166hypothetical protein
BH2092114-2.865112hypothetical protein
BH2093012-3.075320transposase (04)
BH2094014-3.709100transcriptional regulator (LysR family)
BH2095-114-3.313335hypothetical protein
BH2096-214-1.722896hypothetical protein
BH2097-213-1.645794two-component response regulator
BH2098-113-1.936090ABC transporter (ATP-binding protein)
BH2099014-1.900904hypothetical protein
BH2100012-0.915761hypothetical protein
BH2101014-0.626919NADP-specific glutamate dehydrogenase
BH2102216-1.534739transcriptional activator of the glutamate
BH2103519-1.735432hypothetical protein
BH2104521-3.289963hypothetical protein
BH2105422-4.704378xylanase Y
BH2106324-4.887622hypothetical protein
BH2107323-4.197237hypothetical protein
BH2108323-4.268955hypothetical protein
BH2109223-3.021259hypothetical protein
BH2110223-2.334466hypothetical protein
BH2111222-0.901905hypothetical protein
BH2112218-1.452235transmembrane lipoprotein
BH2113118-1.619860ABC transporter (permease)
BH2114219-2.024229beta-xylosidase (1,4-beta-D-xylan
BH2115319-3.265372hypothetical protein
BH2116319-3.741788chloramphenicol resistance protein
BH2117320-3.906281transcriptional regulator (LysR family)
BH2118317-4.175533hypothetical protein
BH2119319-4.672623hypothetical protein
BH2120218-4.206772alkaline xylanase A (1,4-beta-D-xylan
BH2121222-6.029199hypothetical protein
BH2122119-4.890527hypothetical protein
BH2123316-4.121750two-component response regulator
BH2124220-3.911495hypothetical protein
BH2125117-3.277235transcriptional regulator of
BH2126117-3.201849hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2103HTHTETR323e-05 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 31.9 bits (72), Expect = 3e-05

		 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

		

		Query: 1  MKNGMSPTKEARFKAILDAATELLVEKPT--ASMNEIAEYAGV 41

		          M        +   + ILD A  L  ++     S+ EIA+ AGV

		Sbjct: 1  MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGV 43
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2109HTHFIS260.004 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 25.9 bits (57), Expect = 0.004

		 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

		

		Query: 3  KVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLV 44

		           +L+ADD+  +R  L   +     GY+V     N    ++ +

		Sbjct: 5  TILVADDDAAIRTVLNQALSRA--GYDVRI-TSNAATLWRWI 43
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2111BINARYTOXINB230.036 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

		          Length = 764

		

		 Score = 23.5 bits (50), Expect = 0.036

		 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

		

		Query: 1  MFKKKSLILSMAMSSLLVAAACSNDAATDAHDQDENNATND 41

		          M K+K LI  MA+S++LV++   N     A  + EN   N+

		Sbjct: 1  MKKRKVLIPLMALSTILVSST-GNLEVIQAEVKQENRLLNE 40
19BH2335BH2346Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2335016-3.248171ABC transporter (ATP-binding protein)
BH2336021-4.623692ABC transporter (ATP-binding protein)
BH2337732-8.843517hypothetical protein
BH2338526-7.088628hypothetical protein
BH2339219-5.172595hypothetical protein
BH2340118-4.370228hypothetical protein
BH2341317-2.478624hypothetical protein
BH2342316-3.718586transposase (05)
BH2343318-4.961104transposase (06)
BH2344421-6.201031hypothetical protein
BH2345422-8.036074hypothetical protein
BH2346321-7.214830hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2339OMADHESIN280.001 Yersinia outer membrane adhesin signature.
		>OMADHESIN#Yersinia outer membrane adhesin signature.

		          Length = 455

		

		 Score = 27.6 bits (60), Expect = 0.001

		 Identities = 8/20 (40%), Positives = 14/20 (70%)

		

		Query: 23  DGRFEEIEKRFDKIDQKFDK 42

		           D +F +++ R DK+D + DK

		Sbjct: 365 DHKFRQLDNRLDKLDTRVDK 384
20BH2422BH2427Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH2422216-0.023901phosphatidate cytidylyltransferase
BH24233160.485514undecaprenyl pyrophosphate synthetase
BH24245180.530073ribosome recycling factor
BH24252150.485863uridylate kinase
BH2426314-0.121694elongation factor Ts
BH2427213-0.18080030S ribosomal protein S2
21BH2446BH2457Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2446212-1.329365flagellar motor switch protein
BH2447313-0.588274flagellar protein required for flagellar
BH24484130.080339hypothetical protein
BH24495130.483141flagellar hook protein
BH24503130.959439hypothetical protein
BH24513121.310360flagellar hook assembly protein
BH24524111.188507hypothetical protein
BH24533110.901686hypothetical protein
BH24542110.571944flagellar protein required for formation of
BH24552100.643614flagellar-specific ATP synthase
BH2456313-0.533219flagellar assembly protein
BH2457212-1.411335flagellar motor switch protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2446FLGMOTORFLIM582e-14 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score = 57.6 bits (139), Expect = 2e-14

		 Identities = 18/44 (40%), Positives = 30/44 (68%)

		

		Query: 1  MADVLSQGEIDALLSALSTGEMDADELKKEELEKKVKVYDFKRA 44

		          M +VLSQ EID LL+A+S+G+   ++ +     +K+ +YDF+R 

		Sbjct: 1  MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRP 44
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2449FLGHOOKAP1382e-07 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 38.4 bits (89), Expect = 2e-07

		 Identities = 11/37 (29%), Positives = 19/37 (51%)

		

		Query: 4  SMYSGISGMRNFQTKLDVIGNNIANVNTFGYKKGRTT 40

		           + + +SG+   Q  L+   NNI++ N  GY +  T 

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2457FLGMOTORFLIG492e-11 Flagellar motor switch protein FliG signature.
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score = 49.0 bits (117), Expect = 2e-11

		 Identities = 27/41 (65%), Positives = 36/41 (87%)

		

		Query: 4  KGLTGRQKAAILLISLGPEVSAQVYKHLSEEEIEQLTLEIA 44

		            LTG+QKAAILL+S+G E+S++V+K+LS+EEIE LT EIA

		Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIA 53
22BH2645BH2666Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2645-211-3.253507glycine betaine transporter
BH2646-113-5.003747small peptidoglycan-associated lipoprotein
BH2647-114-3.987508transcriptional regulator (GntR family)
BH2648015-2.933305ABC transporter (ATP-binding protein)
BH2649118-2.382949hypothetical protein
BH2650019-1.674112hypothetical protein
BH2651119-1.310588transposase (02)
BH2652224-0.135756pyruvate dehydrogenase E3 (dihydrolipoamide
BH2653020-0.042808pyruvate dehydrogenase E2 (dihydrolipoamide
BH2654018-0.856004pyruvate dehydrogenase E1 (lipoamide) beta
BH2655117-1.734467pyruvate dehydrogenase E1 (lipoamide) alpha
BH2656020-3.354094hypothetical protein
BH2657-118-1.948407hypothetical protein
BH2658-215-2.314904formylmethionine deformylase
BH2659-215-2.479291hypothetical protein
BH2660-115-2.373778hypothetical protein
BH2661-113-1.680585hypothetical protein
BH2662013-1.083008hypothetical protein
BH2663211-0.418358potassium uptake protein
BH26641140.108540hypothetical protein
BH26652150.4842122-cys peroxiredoxin
BH26662150.531010hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2663NUCEPIMERASE294e-04 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 29.0 bits (65), Expect = 4e-04

		 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

		

		Query: 7  VIGLGRF-GGSVCRALIENGMEVLAID 32

		          V G   F G  V + L+E G +V+ ID

		Sbjct: 5  VTGAAGFIGFHVSKRLLEAGHQVVGID 31
23BH2818BH2836Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2818219-1.241354hypothetical protein
BH2819323-0.943136alkaliphily related protein
BH2820322-1.512350hypothetical protein
BH2821222-1.916941hypothetical protein
BH2822121-2.045959hypothetical protein
BH2823121-3.028883hypothetical protein
BH2824222-3.617682DNA transport machinery
BH2825123-4.732417hypothetical protein
BH2826121-4.250409hypothetical protein
BH2827118-2.237871exogenous DNA-binding protein
BH2829219-2.149843hypothetical protein
BH2828014-1.042712alpha-hemolysin
BH2830-113-0.791565*********glutathione peroxidase
BH2831012-0.505515DNA transport machinery
BH2832114-0.282693late competence protein
BH2833212-1.250059*hypothetical protein
BH2834111-1.336888ATP-dependent DNA helicase
BH2835212-1.786681hypothetical protein
BH2836213-0.073225hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2824BCTERIALGSPG294e-04 Bacterial general secretion pathway protein G signa...
		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 28.7 bits (64), Expect = 4e-04

		 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

		

		Query: 1  MRRVGLQNCKGFTLIEVLLTLALIMILLTVI 31

		          MR    Q  +GFTL+E+++ + +I +L +++

		Sbjct: 1  MRATDKQ--RGFTLLEIMVVIVIIGVLASLV 29
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2825BCTERIALGSPG301e-04 Bacterial general secretion pathway protein G signa...
		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 30.2 bits (68), Expect = 1e-04

		 Identities = 7/28 (25%), Positives = 19/28 (67%)

		

		Query: 1  MNDCKGYTLIEVLVALVCLSIMTAALFP 28

		           +  +G+TL+E++V +V + ++ + + P

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVP 31
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2827BCTERIALGSPG373e-07 Bacterial general secretion pathway protein G signa...
		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 37.2 bits (86), Expect = 3e-07

		 Identities = 15/34 (44%), Positives = 25/34 (73%)

		

		Query: 8  QAGFTLVEMMIVLMIISILLLVALPSMTKNNEVA 41

		          Q GFTL+E+M+V++II +L  + +P++  N E A

		Sbjct: 7  QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKA 40
24BH2927BH2938Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH2927-112-3.553216maltogenic amylase
BH2928215-4.446155hypothetical protein
BH2929317-5.012544hypothetical protein
BH2930418-4.659895hypothetical protein
BH2931m316-3.578779Permease (major facilitator superfamily)
BH2932219-2.995296hypothetical protein
BH2933117-1.153434hypothetical protein
BH2934017-0.952791hypothetical protein
BH29350140.032211aryldialkylphosphatase
BH29361121.310183hypothetical protein
BH29371121.032018immunogenic protein
BH29382130.443912hypothetical protein
25BH2950BH2972Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2950-1143.059464hypothetical protein
BH2951-2113.099446hypothetical protein
BH2952-2113.188083Mg-protoporphyrin IX monomethyl ester oxidative
BH2953-2103.228499NADPH-flavin oxidoreductase
BH2954-2102.650197hypothetical protein
BH2955-292.161610methylmalonyl-CoA mutase alpha subunit
BH2956-2110.937368methylmalonyl-CoA mutase beta subunit
BH2957015-0.681055methylmalonyl-CoA decarboxylase alpha subunit
BH2958-116-3.144797transcriptional regulator (TetR/AcrR family)
BH2959220-5.261663hypothetical protein
BH2960116-3.526552hypothetical protein
BH2961217-4.055443hypothetical protein
BH2962113-2.547063hypothetical protein
BH2963113-2.353335hypothetical protein
BH2964114-2.057830hypothetical protein
BH2965011-0.159047transposase (04)
BH2966011-0.690465hypothetical protein
BH2967010-0.744153transposase (01)
BH2968211-1.423118two-component response regulator involved in
BH2969212-1.148280modulation of CheA activity in response to
BH2970111-0.861690two-component sensor histidine kinase involved
BH2971114-0.595958hypothetical protein
BH2972417-0.374101hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2958HTHTETR507e-12 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 50.0 bits (119), Expect = 7e-12

		 Identities = 11/42 (26%), Positives = 24/42 (57%)

		

		Query: 2  KRSTKERIIETALLLFEEHGFHAVTVDRIVQESGTSKGGFYH 43

		           + T++ I++ AL LF + G  + ++  I + +G ++G  Y 

		Sbjct: 9  AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW 50
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2968HTHFIS301e-04 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 30.2 bits (68), Expect = 1e-04

		 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

		

		Query: 2  ATVLVVDDAAFMRMMIKDILTKNDFEVVGEAANGEEA 38

		          AT+LV DD A +R ++   L++  ++V    +N    

		Sbjct: 4  ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATL 39
26BH3072BH3082Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3072215-2.721796transcriptional regulator
BH3073219-3.148661PTS system, enzyme I
BH3074426-6.909482PTS system, histidine-containing phosphocarrier
BH3075528-7.915393transcriptional regulator of spore coat protein
BH3076530-9.516331transcriptional repressor of sporulation,
BH3077433-9.231183transcriptional regulator (MarR family)
BH3078535-9.225734hypothetical protein
BH3079432-7.593000hypothetical protein
BH3080230-6.448797hypothetical protein
BH3081328-5.465399hypothetical protein
BH3082225-4.663730hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3073PHPHTRNFRASE603e-15 Phosphoenolpyruvate-protein phosphotransferase sign...
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		          signature.

		          Length = 572

		

		 Score = 60.2 bits (146), Expect = 3e-15

		 Identities = 44/44 (100%), Positives = 44/44 (100%)

		

		Query: 1  MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKL 44

		          MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKL

		Sbjct: 1  MHHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKL 44
27BH3133BH3138Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH3133216-0.204788hypothetical protein
BH3134217-0.137442hypothetical protein
BH31352170.749762hypothetical protein
BH31363161.692027hypothetical protein
BH31372171.289010transposase (01)
BH31382190.47523950S ribosomal protein L20
28BH3208BH3217Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH3208017-3.125782hypothetical protein
BH3209016-3.80183130S ribosomal protein S4
BH3210116-3.941812hypothetical protein
BH3211-115-3.863651multidrug resistance protein
BH3212015-3.553262hypothetical protein
BH3213016-2.763616hypothetical protein
BH3214218-2.424804ABC transporter (ATP-binding protein)
BH3215218-2.361616hypothetical protein
BH3216120-2.405385RNA polymerase ECF-type sigma factor
BH3217318-1.644909hypothetical protein
29BH3320BH3334Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3320122-3.373389hypothetical protein
BH3321122-3.411537NADH-dependent FMN reductase
BH3322222-3.365381cell wall-binding protein
BH3323422-3.693902transcriptional regulator (GntR family)
BH3324419-2.048216glucose-1-phosphate thymidylyltransferase
BH3325216-0.172001hypothetical protein
BH33262160.636707acetylxylan esterase (cephalosporin-C
BH33271160.135508hypothetical protein
BH33280130.275055molybdenum transport system (permease)
BH3329015-0.570554molybdenum transport system (molybdate-binding
BH3330013-0.910631hypothetical protein
BH3331-112-0.883676hypothetical protein
BH3332-213-0.640741hypothetical protein
BH3333016-1.807247hypothetical protein
BH3334-118-3.261488hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3332HTHTETR331e-05 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 33.1 bits (75), Expect = 1e-05

		 Identities = 11/40 (27%), Positives = 19/40 (47%)

		

		Query: 5  ERRKQKKMEQIFTAAFSLMATYGYAKVSINEIATEARVSP 44

		          ++  Q+  + I   A  L +  G +  S+ EIA  A V+ 

		Sbjct: 6  KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTR 45
30BH3366BH3380Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3366012-3.791646spore coat polysaccharide synthesis
BH3367-113-3.787892spore coat polysaccharide synthesis
BH3368-113-3.545421hypothetical protein
BH3369016-3.538969hypothetical protein
BH3370015-3.757678hypothetical protein
BH3371016-4.809843hypothetical protein
BH3372016-5.168452hypothetical protein
BH3373116-5.648282maturation of the outermost layer of the spore
BH3374323-7.463865hypothetical protein
BH3375322-7.197690hypothetical protein
BH3376425-7.611921lipopolysaccharide biosynthesis
BH3377222-7.064000hypothetical protein
BH3378120-6.180971hypothetical protein
BH3379-116-4.821298UDP-glucose 4-epimerase
BH3380-213-3.595550glycosyl transferase (lipopolysaccharide
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3379NUCEPIMERASE543e-13 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 54.4 bits (131), Expect = 3e-13

		 Identities = 19/34 (55%), Positives = 24/34 (70%)

		

		Query: 4  KVLVTGGAGFIGSHIVELLLNKGYEVVVVDNLTT 37

		          K LVTG AGFIG H+ + LL  G++VV +DNL  

		Sbjct: 2  KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLND 35
31BH3429BH3436Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH34292170.216867hypothetical protein
BH34303140.989636hypothetical protein
BH34311131.188768glycerol-inducible protein
BH34322140.417940hypothetical protein
BH34332150.433006hypothetical protein
BH34341120.863746hypothetical protein
BH34352120.186930lipoic acid synthetase
BH3436212-0.531599hypothetical protein
32BH3456BH3475Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH3456216-2.033017hypothetical protein
BH3457117-2.666578transcriptional regulator
BH3458116-2.498174transposase (04)
BH3459219-3.833904hypothetical protein
BH3460220-4.881240hypothetical protein
BH3461322-6.272532transposase (03)
BH3462-123-4.027463hypothetical protein
BH3463-120-2.652235hypothetical protein
BH3464020-1.247741hypothetical protein
BH3465018-0.464801hypothetical protein
BH34660190.157786transposase (09)
BH34670190.739416hypothetical protein
BH34680160.555813nitrogen fixation protein
BH34691170.409972nitrogen fixation protein
BH3470219-0.057080hypothetical protein
BH3471112-2.572177ABC transporter (ATP-binding protein)
BH3472114-3.559265hypothetical protein
BH3473014-4.030188hypothetical protein
BH3474113-3.844458hypothetical protein
BH3475-111-3.155156hypothetical protein
33BH3486BH3558Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH34862151.433682butyryl-CoA dehydrogenase
BH34871141.605634acetyl-CoA C-acyltransferase
BH34881140.0733083-hydroxyacyl-CoA dehydrogenase
BH3489117-1.983399hypothetical protein
BH3490-216-3.877019hypothetical protein
BH3491014-5.536053hypothetical protein
BH3492112-3.542203transcriptional regulator (GntR family)
BH3493113-3.179301ABC transporter (ATP-binding protein)
BH3494215-2.070633hypothetical protein
BH3495215-1.457368dihydrodipicolinate reductase
BH3496213-0.924788transcriptional regulator of multidrug-efflux
BH3497013-0.435792hypothetical protein
BH3498014-0.936693hypothetical protein
BH3499-215-3.239923transposase (01)
BH3500-118-5.169887epidermal surface antigen
BH3501421-6.535473hypothetical protein
BH3502220-6.418866hypothetical protein
BH3503221-6.071688transposase (10)
BH3504326-6.989615hypothetical protein
BH3505221-4.833383ABC transporter (ATP-binding protein)
BH3506221-4.209548transcriptional regulator (AraC/XylS family)
BH3507224-4.242992transposase (02)
BH3508221-1.226690cytosine-specific methyltransferase
BH3509322-0.467199restriction endonuclease (HaeIII)
BH35103241.039066N-acetylmuramoyl-L-alanine amidase (sporulation
BH35113251.035311hypothetical protein
BH35124251.023317hypothetical protein
BH35133231.537452hypothetical protein
BH35143231.277806hypothetical protein
BH35152231.299009hypothetical protein
BH35162231.162048hypothetical protein
BH35173250.839919hypothetical protein
BH35183260.791248hypothetical protein
BH3519430-1.297135hypothetical protein
BH3520431-0.401467hypothetical protein
BH3521532-0.250341hypothetical protein
BH35226310.547278hypothetical protein
BH35233280.859534hypothetical protein
BH35244250.808786hypothetical protein
BH35254240.441000hypothetical protein
BH3526325-0.565779hypothetical protein
BH3527324-0.721639hypothetical protein
BH3528326-0.532209hypothetical protein
BH3529528-0.704530hypothetical protein
BH3530528-0.508921hypothetical protein
BH3531528-0.803361hypothetical protein
BH3532626-0.585418hypothetical protein
BH3533527-0.148607hypothetical protein
BH3534827-0.379508hypothetical protein
BH3535826-0.492991hypothetical protein
BH3536726-2.714270hypothetical protein
BH3537829-1.386413hypothetical protein
BH3538726-0.879338hypothetical protein
BH3539724-0.430797penicillin-binding protein
BH3540625-0.980503hypothetical protein
BH3541624-1.709775hypothetical protein
BH3542624-1.152812hypothetical protein
BH3543421-1.730175hypothetical protein
BH3544418-2.367682hypothetical protein
BH3545221-3.452029hypothetical protein
BH3546119-2.913196hypothetical protein
BH3547118-1.522569hypothetical protein
BH35483140.476420hypothetical protein
BH35492150.788625immunity repressor protein (phage-related
BH35502141.042116hypothetical protein
BH35512131.266247integrase (phage-related protein)
BH35521162.017011small protein B
BH35531142.065501ribonuclease R
BH35541181.901927carboxylesterase
BH35552231.858010protein translocation protein
BH35561212.309484enolase (2-phosphoglycerate dehydratase)
BH35571171.9058722,3-bisphosphoglycerate-independent
BH35582151.296081triosephosphate isomerase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3503HTHFIS240.032 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 23.6 bits (51), Expect = 0.032

		 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

		

		Query: 5   HLTTFERGRL-ETLQKLGWSTRQIAKELNRHHSTIARELKR 44

		            L   E   +   L     +  + A  L  + +T+ ++++ 

		Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3548HTHFIS270.001 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 27.5 bits (61), Expect = 0.001

		 Identities = 4/34 (11%), Positives = 16/34 (47%)

		

		Query: 8   EVLREYMRHNNWDEKDLAEKMGVAYVTVYRVLRK 41

		            ++   +     ++   A+ +G+   T+ + +R+

		Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3555SECGEXPORT250.009 Protein-export SecG membrane protein signature.
		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score = 24.9 bits (54), Expect = 0.009

		 Identities = 12/42 (28%), Positives = 23/42 (54%)

		

		Query: 1  MQTVAFVLLIIVSISLIAVVLLQSGRSAGLSGAISGGAEQLV 42

		          M     V+ +IV+I L+ +++LQ G+ A +  +   GA   +

		Sbjct: 1  MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATL 42
34BH3575BH3580Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
BH35750143.129739hypothetical protein
BH35760133.273032transcriptional regulator (hex regulon
BH3577-1103.836438histidine biosynthesis bifunctional protein
BH3578-1124.193388cyclase
BH3579-1133.364914phosphoribosylformimino-5-aminoimidazole
BH3580-1133.061322amidotransferase
35BH3607BH3624Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3607317-3.994452hypothetical protein
BH3608220-4.486847ribosomal protein S30AE family
BH3609019-3.751864hypothetical protein
BH3610119-4.480866cold-shock protein
BH3611220-4.467250hypothetical protein
BH3612119-4.489979flagellar protein
BH3613119-4.157317flagellar protein
BH3614118-3.354448flagellar hook-associated protein 2 (HAP2)
BH3615117-2.043154flagellar protein
BH3616214-0.440114flagellin
BH36171110.312768carbon storage regulator
BH36180100.189893hypothetical protein
BH36191110.053812hypothetical protein
BH36202110.096513flagellar hook-associated protein 3 (HAP3)
BH36212120.999213flagellar hook-associated protein 1 (HAP1)
BH36224160.747560flagellar protein
BH3623116-0.003750flagellin synthesis regulatory protein
BH3624213-0.301295flagellar protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3616FLAGELLIN573e-14 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 57.4 bits (138), Expect = 3e-14

		 Identities = 19/44 (43%), Positives = 27/44 (61%)

		

		Query: 1  MIINHNLPAMNAHRNMGINLNQGQKAMEKLSSGLRINRAGDDAA 44

		           +IN N  ++    N+  + +    A+E+LSSGLRIN A DDAA

		Sbjct: 2  QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAA 45
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3620FLAGELLIN270.001 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 27.3 bits (60), Expect = 0.001

		 Identities = 9/42 (21%), Positives = 19/42 (45%)

		

		Query: 1  MRVTQGMLAGNSLRHISQGYMRLGELQDQLSTGKRITRASQD 42

		            +    L+  +  ++++    L    ++LS+G RI  A  D

		Sbjct: 2  QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDD 43
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3621FLGHOOKAP1516e-12 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 50.7 bits (121), Expect = 6e-12

		 Identities = 15/36 (41%), Positives = 20/36 (55%)

		

		Query: 8  GLETARRGMMTQQAALRTVGHNIANANTPGYTRQRV 43

		           +  A  G+   QAAL T  +NI++ N  GYTRQ  

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT 38
36BH3646BH3652Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3646015-3.027091oligopeptide ABC transporter (ATP-binding
BH3647015-3.654571transcriptional regulator
BH3648118-4.321317hypothetical protein
BH3649218-5.014048UDP-glucose 4-epimerase
BH3650116-4.844490teichuronic acid biosynthesis
BH3651116-4.724742hypothetical protein
BH3652014-3.467568UTP-glucose-1-phosphate uridylyltransferase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3649NUCEPIMERASE515e-12 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 50.9 bits (122), Expect = 5e-12

		 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

		

		Query: 3  KVLVTGGAGFIGSHLVDLLIAEGTEVVIVDNLSSG---SLKH 41

		          K LVTG AGFIG H+   L+  G +VV +DNL+     SLK 

		Sbjct: 2  KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQ 43
37BH3796BH3801Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3796-1174.118216hypothetical protein
BH3797-2163.995225transcriptional regulator (TetR/AcrR family)
BH3798-1154.020339acyl-CoA dehydrogenase
BH3799-2153.746446acyl-CoA dehydrogenase
BH3800-2143.4296633-hydroxybutyryl-CoA dehydrogenase
BH3801-2143.377301acetyl-CoA acetyltransferase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3797HTHTETR432e-09 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 43.5 bits (102), Expect = 2e-09

		 Identities = 13/41 (31%), Positives = 25/41 (60%)

		

		Query: 4  QQLIKKRREQMIKGAVSLFIEKGFHRTTTREIAKQSGFSIG 44

		          +Q  ++ R+ ++  A+ LF ++G   T+  EIAK +G + G

		Sbjct: 6  KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRG 46
38BH3961BH4047Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH3961311-1.066723hypothetical protein
BH3962215-3.175775hypothetical protein
BH3963215-3.533452hypothetical protein
BH3964323-5.587923hypothetical protein
BH3965120-4.946921transposase (22)
BH3966015-2.927475transposase (23)
BH3967016-0.377771hypothetical protein
BH39680191.880298hypothetical protein
BH39690181.847232hypothetical protein
BH39701192.207946transglutaminase
BH39712212.621517ABC transporter required for expression of
BH39720222.490914ABC transporter required for expression of
BH39730232.102366hypothetical protein
BH39740233.106927cytochrome d ubiquinol oxidase subunit II
BH39750233.684170cytochrome d ubiquinol oxidase subunit I
BH39760253.385269hypothetical protein
BH3977-2253.254260hypothetical protein
BH3978-1232.958810ABC transporter (permease)
BH3979018-1.026721ABC transporter (ATP-binding protein)
BH3980121-4.663159hypothetical protein
BH3981122-5.334156hypothetical protein
BH3982125-6.102803transcriptional pleiotropic regulator of
BH3983127-6.687718hypothetical protein
BH3984230-9.385278hypothetical protein
BH3985230-9.288205transposase (13)
BH3986331-9.706020transposase (24)
BH3987228-9.193718hypothetical protein
BH3988225-8.861767hypothetical protein
BH3989224-8.176153hypothetical protein
BH3990217-3.982023hypothetical protein
BH3991215-3.101246hypothetical protein
BH3992417-3.944655transposase (12)
BH3993521-4.194967hypothetical protein
BH3994520-4.044929hypothetical protein
BH3995517-3.953048hypothetical protein
BH3996524-5.933485hypothetical protein
BH3997626-7.613325hypothetical protein
BH3998628-8.506975transposase (25)
BH3999733-10.905633transposase (26)
BH4000635-11.331418transposase (27)
BH4001737-12.102082hypothetical protein
BH4002529-10.119768hypothetical protein
BH4003227-8.232726hypothetical protein
BH4004020-5.125520modification methylase
BH40050252.776277transposase (13)
BH40063263.270197transposase (13)
BH40073273.829246hypothetical protein
BH40083242.910317hypothetical protein
BH4009117-0.553914hypothetical protein
BH4010219-1.082828hypothetical protein
BH4011519-3.501230hypothetical protein
BH4012518-5.113774hypothetical protein
BH4013517-5.441758hypothetical protein
BH4014518-5.575558response regulator aspartate phosphatase
BH4015621-4.534747hypothetical protein
BH4016621-4.942131hypothetical protein
BH4017414-2.705191hypothetical protein
BH40183150.020948hypothetical protein
BH40192161.168381hypothetical protein
BH40203192.636782hypothetical protein
BH40212223.295763hypothetical protein
BH40222243.804221serine protease Do
BH40232223.213064hypothetical protein
BH40242223.460703hypothetical protein
BH40251203.141895hypothetical protein
BH40261183.206111two-component sensor histidine kinase
BH40270162.961682two-component response regulator
BH40280163.696810*****adenylosuccinate synthetase
BH40291173.528288replicative DNA helicase
BH40300152.58032350S ribosomal protein L9
BH40310174.321449hypothetical protein
BH40321184.384378hypothetical protein
BH40330204.556141amino acid transporter
BH40340183.678671hypothetical protein
BH40350173.660313hypothetical protein
BH40360142.196393cadmium-transporting ATPase
BH4037-111-0.563574cadmium-binding protein (cadmium efflux system
BH4038-111-0.721403Na+/H+ antiporter
BH4039014-1.995670hypothetical protein
BH4040-112-2.867798hypothetical protein
BH4041012-3.262533hypothetical protein
BH4042011-3.054165hypothetical protein
BH4043013-2.766783NAD(P)H dehydrogenase (quinone)
BH4044015-2.064962transcriptional regulator (MarR family)
BH4045120-2.486985hypothetical protein
BH40462250.023293transcriptional regulator of the bltD operon
BH40472240.748047hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3965HTHTETR250.011 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 24.6 bits (53), Expect = 0.011

		 Identities = 6/18 (33%), Positives = 11/18 (61%)

		

		Query: 16 VAQIAKELKVSRPTVYKY 33

		          + +IAK   V+R  +Y +

		Sbjct: 34 LGEIAKAAGVTRGAIYWH 51
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH4012OMS28PORIN250.010 OMS28 porin signature.
		>OMS28PORIN#OMS28 porin signature.

		          Length = 257

		

		 Score = 24.7 bits (53), Expect = 0.010

		 Identities = 12/19 (63%), Positives = 14/19 (73%)

		

		Query: 1  MKNVFLSLIAAGLLFGFVS 19

		          M  +F +LI  GLLFGFVS

		Sbjct: 1  MTKIFSNLIINGLLFGFVS 19
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH4022ACRIFLAVINRP260.005 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 26.0 bits (57), Expect = 0.005

		 Identities = 10/28 (35%), Positives = 14/28 (50%)

		

		Query: 17   GARRGIGISAFIGAILGALLVLFSVPAL 44

		            GA+  +GI    G +   LL +F VP  

		Sbjct: 997  GAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH4027HTHFIS412e-08 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 41.0 bits (96), Expect = 2e-08

		 Identities = 12/43 (27%), Positives = 18/43 (41%)

		

		Query: 1  MENKKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQV 43

		          M    ILV DD+  I  +L   L + G+ V    + A     +

		Sbjct: 1  MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI 43
39BH2435BH2449N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH2435-112-0.177095MCP-glutamate methylesterase / two-component
BH2436013-0.641859hypothetical protein
BH2437-113-1.073858flagella-associated protein
BH2438-112-0.683519flagella-associated protein
BH2439014-1.535132flagella-associated protein
BH2440010-0.631277flagellar protein required for flagellar
BH2441011-0.000720flagellar protein required for flagellar
BH2442113-0.429253flagellar protein required for flagellar
BH2443113-0.900888flagellar protein required for flagellar
BH2444114-0.790666two-component response regulator involved in
BH2445112-0.948394flagellar motor switch protein
BH2446212-1.329365flagellar motor switch protein
BH2447313-0.588274flagellar protein required for flagellar
BH24484130.080339hypothetical protein
BH24495130.483141flagellar hook protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2435HTHFIS288e-04 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 27.9 bits (62), Expect = 8e-04

		 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

		

		Query: 3  SRIKVLVVDDSAFMRKVITSMLESDPRLEVVGTARNGEDALK 44

		          +   +LV DD A +R V+   L        V    N     +

		Sbjct: 2  TGATILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWR 41
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2439TYPE3IMSPROT531e-12 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		          family signature.

		          Length = 354

		

		 Score = 52.8 bits (127), Expect = 1e-12

		 Identities = 19/32 (59%), Positives = 25/32 (78%)

		

		Query: 13 AQEKTEKATPKKRQDSRKKGQVAKSTDVNTAI 44

		          + EKTE+ TPKK +D+RKKGQVAKS +V +  

		Sbjct: 2  SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTA 33
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2440TYPE3IMRPROT260.004 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

		          family signature.

		          Length = 261

		

		 Score = 25.9 bits (57), Expect = 0.004

		 Identities = 13/42 (30%), Positives = 25/42 (59%)

		

		Query: 3  DWIQLLPMFLLVFVRMLAFLMTMPLFSYRNIPAMFKVGIALF 44

		           W+  L ++    +R+LA + T P+ S R++P   K+G+A+ 

		Sbjct: 8  QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMM 49
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2441TYPE3IMQPROT315e-05 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 30.5 bits (69), Expect = 5e-05

		 Identities = 13/42 (30%), Positives = 26/42 (61%)

		

		Query: 3  VDFIIGIAERGVWTVLLVAGPLLLVALGLGLFVSIFQATTQI 44

		          +D ++    + ++ VL+++G   +VA  +GL V +FQ  TQ+

		Sbjct: 1  MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQL 42
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2442FLGBIOSNFLIP287e-04 Escherichia coli: Flagellar biosynthetic protein Fl...
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein

		          FliP signature.

		          Length = 245

		

		 Score = 27.9 bits (62), Expect = 7e-04

		 Identities = 11/39 (28%), Positives = 18/39 (46%)

		

		Query: 6  LLTAIQLPGLDPEFMTDDPAGVATTVQLLLLLTVLSLAP 44

		           L   QLPG+  + +       +  VQ L+ +T L+  P

		Sbjct: 17 PLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIP 55
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2444HTHFIS331e-05 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 32.9 bits (75), Expect = 1e-05

		 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

		

		Query: 2  AARILIVDDASFMRMMIKDILTKNGYDVVGEAHDGEQAVEK 42

		           A IL+ DD + +R ++   L++ GYDV   ++        

		Sbjct: 3  GATILVADDDAAIRTVLNQALSRAGYDVRITSN-AATLWRW 42
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2445FLGMOTORFLIM250.008 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score = 25.2 bits (55), Expect = 0.008

		 Identities = 11/35 (31%), Positives = 18/35 (51%)

		

		Query: 4  EMLSQDEINELLKGVASDGDDAEEVDGLDAPENQK 38

		          E+LSQDEI++LL  ++S     E+   +       

		Sbjct: 3  EVLSQDEIDQLLTAISSGDASIEDARPISDTRKIT 37
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2446FLGMOTORFLIM582e-14 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score = 57.6 bits (139), Expect = 2e-14

		 Identities = 18/44 (40%), Positives = 30/44 (68%)

		

		Query: 1  MADVLSQGEIDALLSALSTGEMDADELKKEELEKKVKVYDFKRA 44

		          M +VLSQ EID LL+A+S+G+   ++ +     +K+ +YDF+R 

		Sbjct: 1  MTEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRP 44
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH2449FLGHOOKAP1382e-07 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 38.4 bits (89), Expect = 2e-07

		 Identities = 11/37 (29%), Positives = 19/37 (51%)

		

		Query: 4  SMYSGISGMRNFQTKLDVIGNNIANVNTFGYKKGRTT 40

		           + + +SG+   Q  L+   NNI++ N  GY +  T 

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39
40BH3733BH3739N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
BH37330151.670729transcriptional regulator (TetR/AcrR family)
BH3734-1151.619702hypothetical protein
BH37350121.365137hydroxymyristoyl-(acyl carrier protein)
BH37360131.383725hypothetical protein
BH3737-191.428846flagellar hook-basal body protein
BH3738-1101.679215flagellar basal-body rod protein
BH3739-2101.151183cell shape determining protein (MreB-like
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3733HTHTETR462e-10 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 46.2 bits (109), Expect = 2e-10

		 Identities = 12/44 (27%), Positives = 22/44 (50%)

		

		Query: 1  MSTKDGQAKERILKAAEELFQVKGYHQVTVREIARKAGCSHTSI 44

		             +  + ++ IL  A  LF  +G    ++ EIA+ AG +  +I

		Sbjct: 5  TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3737FLGHOOKAP1302e-04 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 29.9 bits (67), Expect = 2e-04

		 Identities = 10/22 (45%), Positives = 15/22 (68%)

		

		Query: 16 QKKLDTLSHNIANSNTTGYKRR 37

		          Q  L+T S+NI++ N  GY R+

		Sbjct: 15 QAALNTASNNISSYNVAGYTRQ 36
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3738FLGHOOKAP1285e-04 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 28.4 bits (63), Expect = 5e-04

		 Identities = 8/32 (25%), Positives = 15/32 (46%)

		

		Query: 4  GLWGAAAGMITQQQRQEMLTNNLANVNTPGYK 35

		           +  A +G+   Q      +NN+++ N  GY 

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYT 34
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
BH3739SHAPEPROTEIN692e-18 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		          signature.

		          Length = 347

		

		 Score = 69.0 bits (169), Expect = 2e-18

		 Identities = 31/48 (64%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

		

		Query: 1  MFGRDIGIDLGTANVLIYVKGKGIVLNEPSVVAVET----STNRVLAV 44

		          MF  D+ IDLGTAN LIYVKG+GIVLNEPSVVA+      S   V AV

		Sbjct: 8  MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAV 55

 
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