| S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
| 1 | HPSH_00280 | HPSH_00390 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_00280 | 2 | 25 | -2.040441 | hypothetical protein | |
| HPSH_00285 | 2 | 17 | -0.171287 | hypothetical protein | |
| HPSH_00290 | 2 | 16 | 0.924011 | hypothetical protein | |
| HPSH_00295 | 1 | 12 | 1.449951 | hypothetical protein | |
| HPSH_00300 | 1 | 13 | 1.482267 | hypothetical protein | |
| HPSH_00305 | 2 | 13 | 2.472408 | hypothetical protein | |
| HPSH_00320 | 0 | 14 | 2.614565 | urease accessory protein (ureH) | |
| HPSH_00325 | 4 | 24 | 3.195562 | urease accessory protein | |
| HPSH_00330 | 4 | 24 | 2.922451 | urease accessory protein (ureF) | |
| HPSH_00335 | 4 | 22 | 2.523206 | urease accessory protein UreE | |
| HPSH_00340 | 3 | 20 | 2.304314 | urea transporter | |
| HPSH_00345 | 1 | 18 | 1.827755 | hypothetical protein | |
| HPSH_00350 | 1 | 17 | 2.385908 | urease subunit alpha | |
| HPSH_00355 | -2 | 11 | 1.380488 | bifunctional urease subunit gamma/beta | |
| HPSH_00360 | -1 | 10 | 1.839796 | *lipoprotein signal peptidase | |
| HPSH_00365 | 2 | 12 | 2.488452 | urease protein (ureC) | |
| HPSH_00370 | 3 | 15 | 2.774007 | 30S ribosomal protein S20 | |
| HPSH_00375 | 2 | 13 | 1.944674 | peptide chain release factor 1 | |
| HPSH_00380 | 3 | 14 | 1.830763 | hypothetical protein | |
| HPSH_00385 | 3 | 13 | 1.752431 | outer membrane protein HorA | |
| HPSH_00390 | 2 | 13 | 0.975174 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00350 | UREASE | 1041 | 0.0 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 2 | HPSH_00945 | HPSH_01025 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_00945 | -1 | 12 | 3.498990 | hypothetical protein | |
| HPSH_00965 | -1 | 11 | 3.200025 | hypothetical protein | |
| HPSH_00970 | -2 | 10 | 2.285202 | hypothetical protein | |
| HPSH_00975 | -2 | 9 | 2.335458 | conserved hypothetical secreted protein | |
| HPSH_00980 | -1 | 11 | 3.084634 | fumarate reductase iron-sulfur subunit | |
| HPSH_00985 | -1 | 10 | 3.070798 | fumarate reductase flavoprotein subunit | |
| HPSH_00990 | -2 | 15 | 1.456280 | fumarate reductase cytochrome b-556 subunit | |
| HPSH_00995 | -2 | 16 | 1.464973 | triosephosphate isomerase | |
| HPSH_01000 | -2 | 17 | 2.707986 | enoyl-(acyl carrier protein) reductase | |
| HPSH_01005 | -2 | 16 | 3.095942 | UDP-3-O-[3-hydroxymyristoyl] glucosamine | |
| HPSH_01010 | -2 | 16 | 3.545393 | S-adenosylmethionine synthetase | |
| HPSH_01015 | -2 | 17 | 2.839796 | nucleoside diphosphate kinase | |
| HPSH_01020 | -2 | 18 | 2.238181 | hypothetical protein | |
| HPSH_01025 | -2 | 16 | 3.093800 | 50S ribosomal protein L32 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00995 | TYPE4SSCAGA | 29 | 0.030 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01000 | DHBDHDRGNASE | 60 | 6e-13 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 3 | HPSH_01535 | HPSH_01765 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_01535 | 1 | 15 | 3.518634 | 50S ribosomal protein L21 | |
| HPSH_01540 | 1 | 15 | 3.523739 | 50S ribosomal protein L27 | |
| HPSH_01545 | 1 | 14 | 3.536666 | periplasmic dipeptide-binding protein | |
| HPSH_01550 | 0 | 15 | 3.991910 | dipeptide permease protein | |
| HPSH_01555 | -1 | 14 | 3.251598 | dipeptide permease protein | |
| HPSH_01560 | -3 | 13 | 3.036675 | dipeptide ABC transporter, ATP-binding protein | |
| HPSH_01565 | -2 | 13 | 2.813488 | dipeptide transport system atp-binding protein | |
| HPSH_01570 | -2 | 12 | 2.381189 | GTPase ObgE | |
| HPSH_01575 | -1 | 13 | 1.970281 | hypothetical protein | |
| HPSH_01580 | -1 | 15 | 0.250988 | hypothetical protein | |
| HPSH_01585 | -1 | 16 | -0.689947 | glutamate-1-semialdehyde aminotransferase | |
| HPSH_01590 | 0 | 19 | -1.892877 | hypothetical protein | |
| HPSH_01595 | 2 | 16 | -1.240953 | hypothetical protein | |
| HPSH_01600 | 0 | 14 | -0.825839 | hypothetical protein | |
| HPSH_01615 | 0 | 14 | -1.767110 | type II restriction enzyme | |
| HPSH_01620 | 2 | 10 | -0.493162 | DNA methylase | |
| HPSH_01625 | 1 | 12 | 0.148982 | hypothetical protein | |
| HPSH_01630 | 0 | 15 | -0.154303 | conserved hypothetical ATP-binding protein | |
| HPSH_01635 | -1 | 15 | -0.655176 | nitrite extrusion protein (narK) | |
| HPSH_01640 | 2 | 17 | -0.764236 | hypothetical protein | |
| HPSH_01645 | 2 | 17 | -0.959024 | hypothetical protein | |
| HPSH_01650 | 2 | 15 | -1.344979 | arginyl-tRNA synthetase | |
| HPSH_01655 | 2 | 17 | -1.106116 | sec-independent protein translocase protein | |
| HPSH_01660 | 1 | 14 | -0.609542 | guanylate kinase | |
| HPSH_01665 | 0 | 13 | -0.691531 | poly E-rich protein | |
| HPSH_01670 | -2 | 11 | -1.531637 | hypothetical protein | |
| HPSH_01675 | -2 | 12 | -1.834138 | membrane bound endonuclease (nuc) | |
| HPSH_01680 | 0 | 11 | -1.794352 | outer membrane protein HorC | |
| HPSH_01685 | 2 | 14 | -1.904007 | flagellar basal body L-ring protein | |
| HPSH_01690 | 3 | 14 | -1.653384 | CMP-N-acetylneuraminic acid synthetase | |
| HPSH_01695 | 2 | 12 | -0.956115 | CMP-N-acetylneuraminic acid synthetase (neuA) | |
| HPSH_01700 | 2 | 11 | -0.528425 | flagellar biosynthesis protein G | |
| HPSH_01705 | 1 | 12 | 0.753484 | tetraacyldisaccharide 4'-kinase | |
| HPSH_01710 | 1 | 14 | 1.649075 | NH(3)-dependent NAD+ synthetase (nadE) | |
| HPSH_01715 | 0 | 17 | 2.175055 | *ketol-acid reductoisomerase | |
| HPSH_01720 | -1 | 19 | 1.373698 | cell division inhibitor (minD) | |
| HPSH_01725 | -1 | 17 | 0.485764 | cell division topological specificity factor | |
| HPSH_01730 | 1 | 19 | 1.381174 | hypothetical protein | |
| HPSH_01735 | 0 | 24 | 1.416438 | Holliday junction resolvase-like protein | |
| HPSH_01740 | 3 | 27 | 0.553104 | hypothetical protein | |
| HPSH_01745 | 3 | 26 | 0.598758 | cysteine-rich protein H | |
| HPSH_01750 | 5 | 28 | 1.110764 | hypothetical protein | |
| HPSH_01755 | 2 | 26 | 1.220502 | hypothetical protein | |
| HPSH_01760 | 4 | 29 | 0.582382 | hypothetical protein | |
| HPSH_01765 | 4 | 27 | -1.118919 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01635 | TCRTETA | 46 | 2e-07 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01660 | PF05272 | 29 | 0.011 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01665 | IGASERPTASE | 71 | 6e-15 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01685 | FLGLRINGFLGH | 188 | 4e-62 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01700 | SACTRNSFRASE | 28 | 0.015 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01755 | PREPILNPTASE | 27 | 0.035 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| 4 | HPSH_02330 | HPSH_02445 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_02330 | 0 | 13 | -3.765039 | molybdenum ABC transporter ModA | |
| HPSH_02335 | -1 | 9 | -2.044650 | molybdenum ABC transporter ModB | |
| HPSH_02340 | -2 | 9 | -2.322496 | molybdenum ABC transporter ModD | |
| HPSH_02345 | -2 | 10 | -2.446413 | glutamyl-tRNA synthetase | |
| HPSH_02350 | -2 | 12 | -2.875221 | outer membrane protein (omp22) | |
| HPSH_02355 | -1 | 13 | -3.187648 | type II adenine specific methyltransferase | |
| HPSH_02360 | -1 | 16 | -1.693346 | hypothetical protein | |
| HPSH_02365 | 3 | 23 | -4.567535 | type II adenine specific DNA methyltransferase | |
| HPSH_02370 | 1 | 19 | -3.168854 | type II restriction endonuclease | |
| HPSH_02375 | 6 | 17 | -0.224508 | type II DNA modification enzyme | |
| HPSH_02380 | 8 | 18 | 0.360764 | hypothetical protein | |
| HPSH_02385 | 7 | 18 | 1.071891 | hypothetical protein | |
| HPSH_02390 | 7 | 19 | 1.260484 | hypothetical protein | |
| HPSH_02395 | 5 | 19 | 0.958032 | catalase-like protein | |
| HPSH_02400 | 6 | 20 | 1.371181 | outer membrane protein HofC | |
| HPSH_02405 | 2 | 12 | 1.689708 | putative Outer membrane protein | |
| HPSH_02410 | 2 | 15 | 2.143970 | hypothetical protein | |
| HPSH_02415 | 2 | 15 | 1.996632 | hypothetical protein | |
| HPSH_02420 | 2 | 15 | 2.229105 | hypothetical protein | |
| HPSH_02425 | 2 | 14 | 2.544740 | Holliday junction resolvase | |
| HPSH_02430 | 2 | 15 | 2.564972 | iron-regulated outer membrane protein (frpB) | |
| HPSH_02435 | 3 | 14 | 3.183932 | catalase | |
| HPSH_02440 | 2 | 15 | 3.394933 | hypothetical protein | |
| HPSH_02445 | 2 | 17 | 2.892910 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_02340 | PF05272 | 30 | 0.009 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_02360 | TCRTETOQM | 196 | 5e-57 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| 5 | HPSH_03220 | HPSH_03270 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_03220 | 2 | 16 | 1.914335 | hypothetical protein | |
| HPSH_03225 | 3 | 17 | 2.879944 | transcriptional regulator | |
| HPSH_03230 | 4 | 16 | 2.923575 | outer membrane protein | |
| HPSH_03245 | 3 | 16 | 3.322643 | anaerobic C4-dicarboxylate transporter | |
| HPSH_03250 | 2 | 12 | 1.250095 | L-asparaginase II (ansB) | |
| HPSH_03255 | 1 | 15 | -0.686397 | hypothetical protein | |
| HPSH_03260 | 2 | 15 | -0.478798 | hypothetical protein | |
| HPSH_03265 | 2 | 14 | 0.320929 | hypothetical protein | |
| HPSH_03270 | 3 | 13 | -0.366045 | hypothetical protein |
| 6 | HPSH_03345 | HPSH_03435 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_03345 | 2 | 11 | 1.805646 | hypothetical protein | |
| HPSH_03350 | 2 | 11 | 2.863640 | DNA gyrase subunit A | |
| HPSH_03355 | 2 | 14 | 2.751559 | diacylglycerol kinase | |
| HPSH_03360 | 1 | 13 | 2.651109 | hypothetical protein | |
| HPSH_03365 | 3 | 15 | 3.333322 | hypothetical protein | |
| HPSH_03370 | 3 | 14 | 3.469262 | N-methylhydantoinase | |
| HPSH_03375 | 1 | 12 | 3.290316 | hydantoin utilization protein A | |
| HPSH_03380 | 1 | 13 | 3.180375 | putative outer membrane protein | |
| HPSH_03385 | 0 | 14 | 3.546988 | short-chain fatty acids transporter | |
| HPSH_03390 | 1 | 13 | 0.557229 | hypothetical protein | |
| HPSH_03395 | 2 | 16 | -1.871422 | succinyl-CoA-transferase subunit B | |
| HPSH_03400 | 0 | 16 | -2.685345 | 3-oxoacid Coa-transferase, subunit A | |
| HPSH_03405 | -1 | 14 | -2.679502 | acetyl coenzyme A acetyltransferase (thiolase) | |
| HPSH_03410 | 2 | 14 | -3.228824 | hypothetical protein | |
| HPSH_03415 | 1 | 13 | -3.079244 | putative type II restriction enzyme | |
| HPSH_03420 | 1 | 11 | -2.057766 | putative type II cytosine specific | |
| HPSH_03425 | 0 | 10 | 0.034490 | hypothetical protein | |
| HPSH_03430 | 3 | 10 | 0.628176 | iron(II) transport protein | |
| HPSH_03435 | 5 | 14 | 0.828533 | iron(III) dicitrate transport protein |
| 7 | HPSH_03635 | HPSH_03705 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_03635 | 2 | 10 | -1.992917 | soluble lytic murein transglycosylase | |
| HPSH_03640 | 0 | 11 | -2.380184 | hypothetical protein | |
| HPSH_03645 | 0 | 11 | -1.986479 | glutamyl-tRNA synthetase | |
| HPSH_03660 | 2 | 14 | -1.954655 | hypothetical protein | |
| HPSH_03665 | 3 | 11 | -1.986788 | poly(A) polymerase | |
| HPSH_03670 | 2 | 12 | -0.956642 | ExsB trans-regulatory protein | |
| HPSH_03675 | 0 | 13 | -0.744455 | outer membrane protein HopH | |
| HPSH_03680 | -1 | 12 | 0.933943 | hypothetical protein | |
| HPSH_03685 | -1 | 11 | 1.776832 | hypothetical protein | |
| HPSH_03690 | -2 | 12 | 2.441448 | hypothetical protein | |
| HPSH_03695 | -1 | 12 | 2.831718 | Hydrogenase expression/formation protein | |
| HPSH_03700 | 0 | 12 | 3.106682 | quinone-reactive Ni/Fe hydrogenase, cytochrome b | |
| HPSH_03705 | -2 | 11 | 3.051249 | quinone-reactive Ni/Fe hydrogenase HydB |
| 8 | HPSH_04035 | HPSH_04315 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_04035 | 2 | 12 | -1.266898 | hypothetical protein | |
| HPSH_04040 | 1 | 12 | -1.090941 | membrane protein | |
| HPSH_04045 | 0 | 14 | 0.144014 | diaminopimelate epimerase | |
| HPSH_04050 | 2 | 14 | 0.443798 | hypothetical protein | |
| HPSH_04055 | 1 | 16 | 0.113804 | hypothetical protein | |
| HPSH_04060 | 2 | 11 | 2.310659 | hypothetical protein | |
| HPSH_04065 | 2 | 14 | 3.071971 | 30S ribosomal protein S21 | |
| HPSH_04070 | 2 | 14 | 3.142898 | 3-ketoacyl-(acyl-carrier-protein) reductase | |
| HPSH_04075 | 2 | 15 | 2.638230 | acyl carrier protein | |
| HPSH_04080 | 1 | 17 | 2.048145 | hypothetical protein | |
| HPSH_04085 | 0 | 13 | 1.100506 | 3-oxoacyl-(acyl carrier protein) synthase II | |
| HPSH_04090 | -1 | 14 | -2.487997 | acetyl-CoA carboxylase carboxyltransferase | |
| HPSH_04095 | -1 | 17 | -3.144180 | hypothetical protein | |
| HPSH_04100 | -1 | 16 | -1.937974 | hypothetical protein | |
| HPSH_04105 | -1 | 15 | -1.670628 | hypothetical protein | |
| HPSH_04110 | -2 | 12 | -0.180081 | hypothetical protein | |
| HPSH_04115 | -2 | 11 | 0.406795 | hypothetical protein | |
| HPSH_04120 | -1 | 14 | 0.155298 | hypothetical protein | |
| HPSH_04125 | 1 | 15 | -0.006445 | hypothetical protein | |
| HPSH_04130 | 2 | 16 | -0.055883 | 50S ribosomal protein L31 | |
| HPSH_04135 | 3 | 17 | -0.775497 | transcription termination factor Rho | |
| HPSH_04140 | 5 | 20 | -2.371379 | glutamate racemase | |
| HPSH_04145 | 7 | 22 | -3.277715 | cag pathogenicity island protein (cagA, cag26) | |
| HPSH_04150 | 8 | 24 | -4.398173 | cag pathogenicity island protein (cagB) | |
| HPSH_04155 | 8 | 25 | -3.977355 | cag pathogenicity island protein (cagC, cag25) | |
| HPSH_04160 | 7 | 23 | -3.722990 | cag pathogenicity island protein (cagD, cag24) | |
| HPSH_04165 | 6 | 22 | -2.881646 | cag pathogenicity island protein (cagE, cag23) | |
| HPSH_04170 | 7 | 21 | -2.700789 | cag pathogenicity island protein (cagF, cag22) | |
| HPSH_04175 | 6 | 21 | -2.169838 | cag pathogenicity island protein (cagG, cag21) | |
| HPSH_04180 | 7 | 19 | -2.905143 | hypothetical protein | |
| HPSH_04185 | 7 | 19 | -3.653896 | cag pathogenicity island protein (cagH, cag20) | |
| HPSH_04190 | 6 | 20 | -3.171181 | cag pathogenicity island protein (cagI, cag19) | |
| HPSH_04195 | 8 | 22 | -3.490736 | cag pathogenicity island protein (cagL, cag18) | |
| HPSH_04200 | 8 | 22 | -3.472778 | cag pathogenicity island protein (cagN, cag17) | |
| HPSH_04205 | 8 | 23 | -3.039840 | cag pathogenicity island protein (cagM, cag16) | |
| HPSH_04210 | 7 | 25 | -2.577299 | cag pathogenicity island protein (cagP, cag15) | |
| HPSH_04215 | 8 | 25 | -2.304377 | cag pathogenicity island protein (cagA, cag26) | |
| HPSH_04220 | 10 | 31 | -5.365685 | hypothetical protein | |
| HPSH_04225 | 9 | 31 | -7.230771 | cag pathogenicity island protein (cagB) | |
| HPSH_04230 | 9 | 31 | -6.972982 | cag pathogenicity island protein (cagC, cag25) | |
| HPSH_04235 | 13 | 31 | -6.134735 | hypothetical protein | |
| HPSH_04240 | 11 | 32 | -5.629026 | cag pathogenicity island protein (cagQ, cag14) | |
| HPSH_04245 | 13 | 30 | -5.644794 | hypothetical protein | |
| HPSH_04250 | 10 | 31 | -4.940694 | hypothetical protein | |
| HPSH_04255 | 10 | 28 | -4.654438 | cag pathogenicity island protein (cagS, cag13) | |
| HPSH_04260 | 10 | 22 | -3.706376 | cag pathogenicity island protein (cagT, cag12) | |
| HPSH_04265 | 9 | 22 | -3.779113 | cag pathogenicity island protein (cagU, cag11) | |
| HPSH_04270 | 10 | 22 | -3.787390 | cag pathogenicity island protein (cagV, cag10) | |
| HPSH_04275 | 10 | 21 | -3.583004 | cag pathogenicity island protein (cagW, cag9) | |
| HPSH_04280 | 10 | 19 | -3.228342 | cag pathogenicity island protein (cagX, cag8) | |
| HPSH_04285 | 10 | 18 | -2.894944 | cag pathogenicity island protein (cagY, cag7) | |
| HPSH_04290 | 9 | 18 | -2.423578 | hypothetical protein | |
| HPSH_04295 | 9 | 18 | -2.463938 | cag pathogenicity island protein (cagZ, cag6) | |
| HPSH_04300 | 9 | 19 | -2.190167 | cag pathogenicity island protein (cag alpha) | |
| HPSH_04305 | 6 | 18 | -2.034874 | cag pathogenicity island protein (cag beta, | |
| HPSH_04310 | 3 | 16 | -2.058911 | cag pathogenicity island protein (cag gamma, | |
| HPSH_04315 | 2 | 15 | -1.987764 | cag pathogenicity island protein (cag delta |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04070 | DHBDHDRGNASE | 124 | 6e-37 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04115 | TONBPROTEIN | 30 | 0.010 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04130 | PF01206 | 27 | 0.004 | SirA family protein | |
>PF01206#SirA family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04145 | TYPE4SSCAGA | 1617 | 0.0 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04165 | ACRIFLAVINRP | 33 | 0.009 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04200 | TYPE4SSCAGX | 32 | 0.004 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04215 | TYPE4SSCAGA | 1428 | 0.0 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04270 | PF04335 | 118 | 6e-35 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04280 | TYPE4SSCAGX | 867 | 0.0 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04285 | IGASERPTASE | 43 | 1e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04315 | PF07201 | 30 | 0.019 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| 9 | HPSH_04455 | HPSH_04645 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_04455 | 1 | 18 | -3.915530 | hypothetical protein | |
| HPSH_04460 | 1 | 21 | -5.632582 | 50S ribosomal protein L28 | |
| HPSH_04465 | 2 | 24 | -6.611473 | putative potassium channel protein | |
| HPSH_04470 | 3 | 25 | -6.180903 | hypothetical protein | |
| HPSH_04475 | 4 | 26 | -7.321536 | hypothetical protein | |
| HPSH_04480 | 5 | 27 | -7.671969 | integrase/recombinase (xerD) | |
| HPSH_04485 | 4 | 20 | -4.983492 | hypothetical protein | |
| HPSH_04490 | 5 | 18 | -4.490081 | hypothetical protein | |
| HPSH_04495 | 5 | 17 | -4.171909 | hypothetical protein | |
| HPSH_04500 | 5 | 17 | -4.652638 | hypothetical protein | |
| HPSH_04505 | 5 | 16 | -4.598906 | hypothetical protein | |
| HPSH_04510 | 5 | 16 | -4.289371 | hypothetical protein | |
| HPSH_04515 | 7 | 15 | -6.441150 | PARA protein | |
| HPSH_04520 | 6 | 19 | -6.620889 | hypothetical protein | |
| HPSH_04525 | 5 | 20 | -7.102176 | hypothetical protein | |
| HPSH_04530 | 5 | 25 | -8.187986 | hypothetical protein | |
| HPSH_04535 | 2 | 26 | -7.833795 | hypothetical protein | |
| HPSH_04540 | 3 | 27 | -7.872235 | hypothetical protein | |
| HPSH_04545 | 3 | 29 | -8.543476 | conjugal transfer protein (traG) | |
| HPSH_04550 | 5 | 32 | -10.663293 | hypothetical protein | |
| HPSH_04555 | 5 | 32 | -10.151126 | hypothetical protein | |
| HPSH_04560 | 5 | 32 | -10.020108 | hypothetical protein | |
| HPSH_04565 | 5 | 28 | -7.817509 | VIRB11 | |
| HPSH_04570 | 5 | 22 | -6.653913 | hypothetical protein | |
| HPSH_04575 | 4 | 22 | -6.250980 | hypothetical protein | |
| HPSH_04580 | 4 | 23 | -5.939706 | hypothetical protein | |
| HPSH_04585 | 4 | 23 | -6.772519 | hypothetical protein | |
| HPSH_04590 | 5 | 25 | -7.621825 | ComB3 protein | |
| HPSH_04595 | 7 | 26 | -8.275286 | Component of conjugal plasmid transfer system | |
| HPSH_04600 | 7 | 30 | -8.945051 | hypothetical protein | |
| HPSH_04605 | 8 | 30 | -9.432064 | hypothetical protein | |
| HPSH_04610 | 8 | 29 | -9.543866 | topoisomerase I | |
| HPSH_04615 | 8 | 29 | -9.621763 | DNA transfer protein | |
| HPSH_04620 | 6 | 21 | -6.457440 | hypothetical protein | |
| HPSH_04625 | 6 | 20 | -5.903303 | hypothetical protein | |
| HPSH_04630 | 6 | 17 | -5.207667 | hypothetical protein | |
| HPSH_04635 | 4 | 12 | -3.849789 | hypothetical protein | |
| HPSH_04640 | 3 | 10 | -2.126015 | hypothetical protein | |
| HPSH_04645 | 3 | 10 | -1.264482 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04455 | PF05211 | 279 | 6e-97 | Neuraminyllactose-binding hemagglutinin | |
>PF05211#Neuraminyllactose-binding hemagglutinin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04495 | VACCYTOTOXIN | 42 | 1e-05 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04500 | SECA | 30 | 0.020 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04530 | RTXTOXIND | 30 | 0.027 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04600 | PF04335 | 98 | 2e-26 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| 10 | HPSH_04695 | HPSH_04740 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_04695 | 1 | 17 | 3.229528 | short-chain oxidoreductase | |
| HPSH_04700 | 2 | 19 | 2.855894 | hypothetical protein | |
| HPSH_04705 | 1 | 20 | 3.202851 | hypothetical protein | |
| HPSH_04710 | 0 | 21 | 3.739173 | hypothetical protein | |
| HPSH_04715 | 0 | 21 | 4.068826 | hypothetical protein | |
| HPSH_04720 | 1 | 22 | 4.336149 | outer membrane protein BabA | |
| HPSH_04725 | 2 | 18 | 1.664486 | hypothetical protein | |
| HPSH_04735 | 1 | 14 | 2.220181 | **hydrogenase expression/formation protein (hypD) | |
| HPSH_04740 | 2 | 12 | 2.140336 | hydrogenase expression/formation protein HypC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04695 | DHBDHDRGNASE | 89 | 5e-23 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04710 | SECA | 29 | 0.003 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| 11 | HPSH_05165 | HPSH_05245 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_05165 | 3 | 15 | 1.781113 | cell division protein | |
| HPSH_05170 | 2 | 19 | 1.025306 | cell division protein FtsZ | |
| HPSH_05175 | -1 | 21 | -3.519472 | hypothetical protein | |
| HPSH_05200 | -1 | 20 | -3.770263 | hypothetical protein | |
| HPSH_05205 | 0 | 28 | -5.554925 | hypothetical protein | |
| HPSH_05210 | 2 | 28 | -5.487421 | exodeoxyribonuclease VII large subunit | |
| HPSH_05215 | 5 | 30 | -6.045950 | hypothetical protein | |
| HPSH_05220 | 6 | 30 | -5.891766 | hypothetical protein | |
| HPSH_05225 | 6 | 29 | -4.685176 | hypothetical protein | |
| HPSH_05230 | 6 | 29 | -5.510043 | hypothetical protein | |
| HPSH_05235 | 3 | 19 | -4.391900 | hypothetical protein | |
| HPSH_05240 | 2 | 19 | -3.144129 | hypothetical protein | |
| HPSH_05245 | 2 | 18 | -3.115472 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05165 | SHAPEPROTEIN | 41 | 8e-06 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05175 | MYCMG045 | 25 | 0.009 | Hypothetical mycoplasma lipoprotein (MG045) signature. | |
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. | |||||
| 12 | HPSH_05770 | HPSH_05810 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_05770 | 2 | 18 | -1.528194 | type II DNA modification enzyme | |
| HPSH_05775 | 3 | 19 | -0.561195 | hypothetical protein | |
| HPSH_05780 | 2 | 14 | -0.784837 | flgM protein | |
| HPSH_05785 | 2 | 12 | -1.651047 | hypothetical protein | |
| HPSH_05790 | 3 | 13 | -1.494087 | peptidyl-prolyl cis-trans isomerase | |
| HPSH_05795 | 3 | 13 | -2.191367 | hypothetical protein | |
| HPSH_05800 | 4 | 13 | -1.765056 | peptidoglycan-associated lipoprotein precursor | |
| HPSH_05805 | 1 | 14 | 0.083358 | translocation protein TolB | |
| HPSH_05810 | 2 | 17 | 0.101235 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05795 | GPOSANCHOR | 33 | 0.002 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05800 | OMPADOMAIN | 143 | 3e-44 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05810 | TYPE4SSCAGA | 33 | 0.002 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| 13 | HPSH_07150 | HPSH_07185 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_07150 | -1 | 11 | -4.673450 | putative endonuclease | |
| HPSH_07155 | -1 | 13 | -4.741257 | putative type III restriction enzyme M protein | |
| HPSH_07170 | 1 | 17 | -3.995110 | biotin synthase | |
| HPSH_07175 | 1 | 18 | -5.201987 | putative ribonuclease N | |
| HPSH_07180 | 1 | 20 | -5.513656 | hypothetical protein | |
| HPSH_07185 | 0 | 15 | -4.136525 | hypothetical protein |
| 14 | HPSH_07315 | HPSH_07345 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_07315 | 14 | 41 | -5.444526 | hypothetical protein | |
| HPSH_07320 | 15 | 42 | -5.307765 | hypothetical protein | |
| HPSH_07325 | 16 | 42 | -5.317593 | hypothetical protein | |
| HPSH_07330 | 15 | 46 | -5.307765 | hypothetical protein | |
| HPSH_07335 | 18 | 48 | -6.407275 | hypothetical protein | |
| HPSH_07340 | 18 | 49 | -7.121526 | hypothetical protein | |
| HPSH_07345 | 1 | 23 | -3.440494 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07340 | PF00577 | 37 | 2e-05 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| 15 | HPSH_07515 | HPSH_07595 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_07515 | 2 | 10 | 0.378621 | outer membrane protein | |
| HPSH_07520 | 1 | 12 | 0.473687 | branched-chain amino acid aminotransferase | |
| HPSH_07525 | 1 | 12 | -0.269636 | outer membrane protein (omp31) | |
| HPSH_07530 | 1 | 15 | -0.139567 | DNA polymerase I (polA) | |
| HPSH_07540 | 1 | 19 | 0.135734 | type II restriction modification enzyme | |
| HPSH_07545 | 4 | 22 | 1.610425 | hypothetical protein | |
| HPSH_07550 | 2 | 15 | 0.965185 | thymidylate kinase | |
| HPSH_07555 | 3 | 13 | 0.510838 | phosphopantetheine adenylyltransferase | |
| HPSH_07560 | 3 | 13 | 0.639503 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | |
| HPSH_07565 | 3 | 12 | 0.382908 | hypothetical protein | |
| HPSH_07570 | 3 | 13 | 0.459256 | flagellar basal body P-ring biosynthesis protein | |
| HPSH_07575 | 2 | 11 | 0.477899 | DNA helicase II | |
| HPSH_07580 | 1 | 12 | 0.469180 | hypothetical protein | |
| HPSH_07585 | 1 | 12 | 0.874161 | seryl-tRNA synthetase | |
| HPSH_07590 | 1 | 16 | 0.500950 | hypothetical protein | |
| HPSH_07595 | 2 | 16 | 0.278315 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07555 | LPSBIOSNTHSS | 221 | 2e-77 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
| 16 | HPSH_07750 | HPSH_07875 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_07750 | 0 | 13 | -3.765071 | dihydroneopterin aldolase | |
| HPSH_07755 | 0 | 12 | -3.941909 | FrpB-like protein | |
| HPSH_07770 | 1 | 16 | -5.782269 | selenocysteine synthase | |
| HPSH_07775 | 4 | 21 | -7.454651 | transcription elongation factor NusA | |
| HPSH_07780 | 3 | 17 | -6.386833 | hypothetical protein | |
| HPSH_07785 | 1 | 12 | -5.517405 | hypothetical protein | |
| HPSH_07790 | 0 | 10 | -4.686374 | Uncharacterized phage-associated protein | |
| HPSH_07795 | 0 | 9 | -4.208516 | hypothetical protein | |
| HPSH_07800 | 0 | 9 | -3.514236 | hypothetical protein | |
| HPSH_07805 | 0 | 9 | -3.018710 | putative type II DNA modification enzyme | |
| HPSH_07810 | 0 | 10 | -2.928291 | type III restriction enzyme | |
| HPSH_07815 | 1 | 9 | -2.079003 | type III DNA modification enzyme | |
| HPSH_07820 | 0 | 12 | -1.945930 | DNA recombinase (recG) | |
| HPSH_07825 | 3 | 16 | -2.093136 | hypothetical protein | |
| HPSH_07830 | 0 | 15 | -0.985500 | hypothetical protein | |
| HPSH_07835 | -1 | 14 | -1.043757 | exodeoxyribonuclease | |
| HPSH_07840 | 0 | 15 | -0.955249 | *periplasmic competence protein | |
| HPSH_07845 | 3 | 13 | -0.315588 | hypothetical protein | |
| HPSH_07850 | 3 | 13 | 0.127708 | hypothetical protein | |
| HPSH_07855 | 3 | 14 | -0.129947 | chromosomal replication initiation protein | |
| HPSH_07860 | 2 | 17 | -2.154057 | purine nucleoside phosphorylase | |
| HPSH_07865 | 2 | 12 | -1.878302 | hypothetical protein | |
| HPSH_07870 | 0 | 11 | -2.337714 | D-fructose-6-phosphate amidotransferase | |
| HPSH_07875 | -1 | 12 | -3.254073 | FAD-dependent thymidylate synthase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07815 | FIMBRILLIN | 29 | 0.049 | Porphyromonas gingivalis: fimbrillin protein signature. | |
>FIMBRILLIN#Porphyromonas gingivalis: fimbrillin protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07855 | HTHFIS | 35 | 5e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 17 | HPSH_00195 | HPSH_00220 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_00195 | -3 | 13 | 0.586726 | comB8 competence protein | |
| HPSH_00200 | -2 | 13 | 0.520852 | comB9 competence protein | |
| HPSH_00205 | -2 | 13 | 1.319533 | comB10 competence protein | |
| HPSH_00210 | -1 | 10 | 1.134034 | mannose-6-phosphate isomerase | |
| HPSH_00215 | -1 | 12 | 1.254157 | GDP-D-mannose dehydratase (rfbD) | |
| HPSH_00220 | -1 | 13 | 1.107630 | nodulation protein (nolK) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00195 | PF04335 | 131 | 1e-39 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00200 | TYPE4SSCAGX | 32 | 0.004 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00215 | NUCEPIMERASE | 88 | 1e-21 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_00220 | NUCEPIMERASE | 49 | 8e-09 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 18 | HPSH_01265 | HPSH_01300 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_01265 | -2 | 13 | 1.072606 | neutrophil activating protein (napA) | |
| HPSH_01270 | -2 | 12 | 0.864877 | histidine kinase sensor protein | |
| HPSH_01275 | -2 | 12 | 1.739724 | hypothetical protein | |
| HPSH_01280 | -3 | 12 | 2.368784 | flagellar basal body P-ring protein | |
| HPSH_01285 | -2 | 13 | 2.260543 | ATP-dependent RNA helicase | |
| HPSH_01290 | -2 | 11 | 1.907846 | hypothetical protein | |
| HPSH_01295 | -2 | 11 | 1.483270 | hypothetical protein | |
| HPSH_01300 | -2 | 11 | 2.506327 | oligopeptide permease ATPase protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01265 | HELNAPAPROT | 148 | 5e-49 | Helicobacter neutrophil-activating protein A family ... | |
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01270 | PF06580 | 30 | 0.015 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01280 | FLGPRINGFLGI | 358 | e-125 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01285 | SECA | 30 | 0.027 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01300 | HTHFIS | 32 | 0.006 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 19 | HPSH_01815 | HPSH_01860 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_01815 | -3 | 9 | 0.747589 | flagellar MS-ring protein | |
| HPSH_01820 | -3 | 10 | 0.957792 | flagellar motor switch protein G | |
| HPSH_01825 | -2 | 10 | 1.075948 | flagellar assembly protein H | |
| HPSH_01830 | -1 | 9 | 1.418986 | 1-deoxy-D-xylulose-5-phosphate synthase | |
| HPSH_01835 | 0 | 12 | 0.538614 | GTP-binding protein LepA | |
| HPSH_01840 | -1 | 13 | -1.154354 | DNA-cytosine methyltransferase | |
| HPSH_01845 | -1 | 12 | 0.618802 | hypothetical protein | |
| HPSH_01850 | 0 | 13 | 0.311021 | flagellar basal-body rod protein (flgG) | |
| HPSH_01855 | 0 | 12 | -0.195891 | alpha-ketoglutarate permease | |
| HPSH_01860 | 0 | 13 | -0.402232 | cell division protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01815 | FLGMRINGFLIF | 552 | 0.0 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01820 | FLGMOTORFLIG | 350 | e-122 | Flagellar motor switch protein FliG signature. | |
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01825 | FLGFLIH | 37 | 4e-05 | Flagellar assembly protein FliH signature. | |
>FLGFLIH#Flagellar assembly protein FliH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01835 | TCRTETOQM | 142 | 5e-38 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01850 | FLGHOOKAP1 | 30 | 0.011 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01855 | TCRTETB | 41 | 8e-06 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01860 | IGASERPTASE | 35 | 0.002 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 20 | HPSH_01955 | HPSH_01985 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_01955 | -1 | 16 | 1.040779 | hypothetical protein | |
| HPSH_01960 | -2 | 15 | 1.340945 | copper ion binding protein (copP) | |
| HPSH_01965 | -2 | 13 | 0.870662 | copper-transporting ATPase | |
| HPSH_01970 | -2 | 13 | 0.493782 | phosphatidylserine synthase | |
| HPSH_01975 | -2 | 13 | 0.365924 | cell division protein (ftsH) | |
| HPSH_01980 | -2 | 14 | -2.332302 | ribosomal protein L11 methyltransferase | |
| HPSH_01985 | -1 | 12 | -2.139549 | response regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01955 | FbpA_PF05833 | 24 | 0.017 | Fibronectin-binding protein | |
>FbpA_PF05833#Fibronectin-binding protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01965 | SECYTRNLCASE | 32 | 0.008 | Preprotein translocase SecY subunit signature. | |
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01975 | HTHFIS | 34 | 0.001 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_01985 | HTHFIS | 86 | 5e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 21 | HPSH_03765 | HPSH_03855 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_03765 | -2 | 11 | -1.232158 | putative lipopolysaccharide biosynthesis | |
| HPSH_03770 | -2 | 11 | -0.608372 | putative lipopolysaccharide biosynthesis | |
| HPSH_03775 | -1 | 11 | -0.444823 | putative lipopolysaccharide biosynthesis | |
| HPSH_03780 | -2 | 12 | -0.395367 | adenylate kinase | |
| HPSH_03785 | -2 | 12 | -1.479012 | aspartyl-tRNA synthetase | |
| HPSH_03790 | 1 | 9 | -0.933131 | chemotaxis protein | |
| HPSH_03795 | 1 | 9 | -0.900012 | NAD-dependent DNA ligase LigA | |
| HPSH_03800 | 1 | 8 | -0.134454 | hypothetical protein | |
| HPSH_03805 | 2 | 8 | -0.038640 | putative abc transporter, ATP-binding protein | |
| HPSH_03810 | 1 | 8 | 0.185441 | hypothetical protein | |
| HPSH_03815 | 1 | 9 | 0.599276 | putative vacuolating cytotoxin (VacA)-like | |
| HPSH_03820 | -2 | 12 | 1.536400 | hypothetical protein | |
| HPSH_03825 | -3 | 12 | 1.125400 | cytoplasmic pump protein of the hefABC efflux | |
| HPSH_03830 | -2 | 11 | 0.847312 | membrane fusion protein of the hefABC efflux | |
| HPSH_03835 | -2 | 10 | -0.176554 | outer-membrane protein of the hefABC efflux | |
| HPSH_03840 | -2 | 11 | -1.465811 | uroporphyrinogen decarboxylase | |
| HPSH_03845 | 0 | 12 | -1.453630 | hypothetical protein | |
| HPSH_03850 | 0 | 11 | -1.439319 | endonuclease III | |
| HPSH_03855 | 0 | 11 | -0.612275 | flagellin A |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03765 | BACINVASINB | 30 | 0.008 | Salmonella/Shigella invasin protein B signature. | |
>BACINVASINB#Salmonella/Shigella invasin protein B signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03780 | MALTOSEBP | 29 | 0.017 | Maltose binding protein signature. | |
>MALTOSEBP#Maltose binding protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03790 | HTHFIS | 55 | 1e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03800 | LCRVANTIGEN | 31 | 6e-04 | Low calcium response V antigen signature. | |
>LCRVANTIGEN#Low calcium response V antigen signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03815 | VACCYTOTOXIN | 278 | 1e-77 | Helicobacter pylori vacuolating cytotoxin signature. | |
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03825 | ACRIFLAVINRP | 894 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03830 | RTXTOXIND | 54 | 1e-10 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03835 | RTXTOXIND | 30 | 0.018 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03850 | PF05272 | 31 | 0.004 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03855 | FLAGELLIN | 244 | 6e-77 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| 22 | HPSH_03950 | HPSH_03980 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_03950 | 2 | 15 | -0.762480 | endonuclease III (nth) | |
| HPSH_03955 | 2 | 14 | -1.509729 | flagellar motor switch protein | |
| HPSH_03960 | 1 | 13 | -1.866997 | hypothetical protein | |
| HPSH_03965 | 1 | 12 | -1.045644 | hypothetical protein | |
| HPSH_03970 | -1 | 12 | -0.939715 | dihydroorotase | |
| HPSH_03975 | -1 | 11 | -0.975111 | hypothetical protein | |
| HPSH_03980 | -1 | 11 | -0.710443 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03950 | OMS28PORIN | 30 | 0.006 | OMS28 porin signature. | |
>OMS28PORIN#OMS28 porin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03955 | FLGMOTORFLIN | 99 | 2e-30 | Flagellar motor switch protein FliN signature. | |
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03965 | PF03544 | 48 | 1e-08 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_03980 | TYPE3IMSPROT | 31 | 0.003 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| 23 | HPSH_04315 | HPSH_04345 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_04315 | 2 | 15 | -1.987764 | cag pathogenicity island protein (cag delta | |
| HPSH_04320 | -1 | 13 | -1.862326 | cag pathogenicity island protein (cag theta, | |
| HPSH_04325 | -2 | 11 | -1.012318 | cag pathogenicity island protein (cag zeta, | |
| HPSH_04330 | -2 | 9 | -0.760527 | hypothetical protein | |
| HPSH_04335 | 0 | 10 | -1.827550 | conserved hypothetical secreted protein | |
| HPSH_04340 | -1 | 10 | -0.741448 | GTP-binding protein Era | |
| HPSH_04345 | 0 | 10 | -0.608461 | ATP-dependent protease ATP-binding subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04315 | PF07201 | 30 | 0.019 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04325 | TYPE3IMSPROT | 27 | 0.021 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04340 | PF03944 | 33 | 0.001 | delta endotoxin | |
>PF03944#delta endotoxin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_04345 | HTHFIS | 29 | 0.044 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 24 | HPSH_05140 | HPSH_05175 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_05140 | -2 | 12 | 0.664211 | hypothetical protein | |
| HPSH_05145 | -2 | 12 | 1.194339 | phosphoglyceromutase | |
| HPSH_05150 | -1 | 13 | 0.971663 | aspartyl/glutamyl-tRNA amidotransferase subunit | |
| HPSH_05155 | -1 | 13 | 0.709749 | adenosylmethionine--8-amino-7-oxononanoate | |
| HPSH_05160 | 0 | 14 | 0.444239 | conserved hypothetical secreted protein | |
| HPSH_05165 | 3 | 15 | 1.781113 | cell division protein | |
| HPSH_05170 | 2 | 19 | 1.025306 | cell division protein FtsZ | |
| HPSH_05175 | -1 | 21 | -3.519472 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05140 | IGASERPTASE | 33 | 0.003 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05150 | TYPE3IMSPROT | 25 | 0.037 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05165 | SHAPEPROTEIN | 41 | 8e-06 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_05175 | MYCMG045 | 25 | 0.009 | Hypothetical mycoplasma lipoprotein (MG045) signature. | |
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. | |||||
| 25 | HPSH_07420 | HPSH_07455 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_07420 | 0 | 14 | 0.480107 | putative inner membrane protein translocase | |
| HPSH_07425 | 0 | 13 | 0.333304 | hypothetical protein | |
| HPSH_07430 | 0 | 11 | 0.671151 | tRNA modification GTPase TrmE | |
| HPSH_07435 | 3 | 11 | 1.180034 | putative Outer membrane protein | |
| HPSH_07440 | 1 | 14 | 0.186529 | hypothetical protein | |
| HPSH_07445 | -2 | 12 | 0.440102 | hypothetical protein | |
| HPSH_07450 | -2 | 12 | 1.590453 | hypothetical protein | |
| HPSH_07455 | -2 | 11 | 1.702078 | membrane-associated lipoprotein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07420 | 60KDINNERMP | 429 | e-147 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07425 | TACYTOLYSIN | 30 | 0.011 | Bacterial thiol-activated pore-forming cytolysin sig... | |
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07430 | TCRTETOQM | 32 | 0.006 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_07455 | LIPOLPP20 | 293 | e-105 | LPP20 lipoprotein precursor signature. | |
>LIPOLPP20#LPP20 lipoprotein precursor signature. | |||||
| 26 | HPSH_08115 | HPSH_08155 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| HPSH_08115 | -1 | 12 | 2.129786 | flagellar hook-basal body protein FliE | |
| HPSH_08120 | -1 | 10 | 1.997615 | flagellar basal body rod protein FlgC | |
| HPSH_08125 | -2 | 12 | 1.519077 | flagellar basal body rod protein FlgB | |
| HPSH_08130 | -1 | 12 | 1.704740 | putative rod shape-determining protein | |
| HPSH_08135 | -1 | 13 | 0.305009 | hypothetical protein | |
| HPSH_08140 | 0 | 13 | 0.368072 | iron(III) ABC transporter, periplasmic | |
| HPSH_08145 | 1 | 13 | 0.357080 | putative peroxidase | |
| HPSH_08150 | 1 | 12 | -0.074984 | outer membrane protein | |
| HPSH_08155 | 2 | 13 | -0.172892 | penicillin-binding protein 2 (pbp2) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_08115 | FLGHOOKFLIE | 77 | 6e-22 | Flagellar hook-basal body complex protein FliE signa... | |
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_08120 | FLGHOOKAP1 | 29 | 0.011 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_08135 | FERRIBNDNGPP | 33 | 0.002 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_08140 | FERRIBNDNGPP | 35 | 5e-04 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| HPSH_08155 | TYPE3IMPPROT | 29 | 0.030 | Type III secretion system inner membrane P protein ... | |
>TYPE3IMPPROT#Type III secretion system inner membrane P protein | |||||