>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.019 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 146 FDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLDAIQRG 205 F +L ++K+ +++ ++ VEE YL + ++ +L + Sbjct: 60 FSERKELSLDKRKL------SDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNS 113 Query: 206 EVLEIVALIAYLNSLGN 222 + + L AYL Sbjct: 114 PNISLSQLKAYLEGKSE 130
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 7e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYDNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGSSVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N + V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.014 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 26.0 bits (57), Expect = 0.049 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 77 KSQRVYRRTLKNYEKKVEAKRKQL-QKSKKDAKKKALYICKNSPFSYF 123 ++ Y + LK Y K++ K+ K K +K L + F YF Sbjct: 164 NNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYF 211
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.2 bits (63), Expect = 0.017 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 7/55 (12%) Query: 78 ITKDFRSSVLGNLHAYDLTLEDQANLQALVVANI--DSVFRCAEVSSDGVVGDKT 130 + R + L+ Q L +V + + R + + + + DKT Sbjct: 182 MAATLRKLLTSQR----LSARSQRQLLQWMVDDRVAGPLIR-SVLPAGWFIADKT 231
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.003 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 90 EQNKSAKESQRMAKEQFE-LEKQRYNAREQERLKNREAIDNI 130 E+ K A E ++ AKEQ + +K + R++ER KNR ++N+ Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL 183
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.008 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 39/143 (27%) Query: 59 ALAGYETSEQELKAQINALVNSLEAKKQELEALLNM------------------------ 94 L + A+IN N +K L+ ++ Sbjct: 208 NLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267 Query: 95 ---------QLQSMLNSEKEKLTQAGSSLKNNLVAELTNAKDNLALELLEKSKATTQ--- 142 Q++S + S KE+ KN ++ +L DN+ L LE +K + Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Query: 143 SLLNTP---RIQGVNLKFLGGYV 162 S++ P ++Q + + GG V Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVV 350
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.3 bits (63), Expect = 0.033 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Query: 31 SMQAALQSEQLALSEEAQDLQIEQLRAKMQIDFLSMQANLQNAKAETLNKLIQCQ-SMLK 89 +L EQ + + + Q Q E K + + L++ A + + + ++ + + Sbjct: 185 LRLTSLIKEQFS-TWQNQKYQKELNLDKKRAERLTVLARINRYENLS--RVEKSRLDDFS 241 Query: 90 SLKDNAMINRANAFVSLLQ--VQANAANGITESNFEAAFKIIAQIGSEYNQIT 140 SL I + +A + V+A + +S E I EY +T Sbjct: 242 SLLHKQAIAK-HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.015 Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 12/154 (7%) Query: 316 KKRLDKIYRLK----QRVLGALGGINPDFKKEILECMQDDLNVSKALSVLESMLSSTNEK 371 + LD++ RL+ Q AL I KK+ E ++ ++ +S S + Sbjct: 208 ENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKSQKSPEDNS 267 Query: 372 LDQNPKNKALKGEIL--ANLKFVEELLGIGFKD--PSAYFQLGVSESEKQEIENKIEE-- 425 ++ +P + A + ++ N + +L I KD SAY + + ++ E+ + IEE Sbjct: 268 IELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEEL 327 Query: 426 --RKRAKEQKDFLKADSIREELLKQKIALMDTPQ 457 R+ AK Q++ +K +++ ++ + Q Sbjct: 328 KKREEAKRQRELIKQENLNTTAYINRVMMASNEQ 361
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.0 bits (228), Expect = 4e-24 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 16/237 (6%) Query: 11 KVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------ESIDVDVSD 64 K+A ITGA+ GIG A L QG + A+ + + +L E+ DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 SNALKEVFSNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQFCL 124 S A+ E+ + I + D+L+N AG G + EE + F VN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPG 184 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 PVKSNWEKTAFSVENFENE--NGFYALEVDAAKSFYSGVYQNALS-PKAVAQKIVFL 238 +++ + + ++ EN + G ++F +G+ L+ P +A ++FL Sbjct: 189 STETDMQWSLWADENGAEQVIKGS-------LETFKTGIPLKKLAKPSDIADAVLFL 238
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 3e-07 Identities = 20/90 (22%), Positives = 32/90 (35%) Query: 43 VQKLREHGGEFFGMRKDNKLIGICGLNHINKTEADLCKFHIDTAYQSQGLGQKLYESVER 102 V + E G F +N IG + A + + Y+ +G+G L Sbjct: 57 VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116 Query: 103 YAFIKGYTKISLHVSKSQIKACNLYQKLGF 132 +A + + L I AC+ Y K F Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHF 146
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.007 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 9/188 (4%) Query: 224 DEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLKETNNANETQPSPYATQTAPENSKE 283 D P +E +A + P P N+ E++ Q A E + + Sbjct: 1006 DVPSVPSNNEEIARVDE-APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 284 KLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNA 343 A S + AN + E + K+ + +E ++K K +K Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK----VETEKTQ 1120 Query: 344 KKPRVVEVPIPHQTSDSDETMRVIKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKTP 403 + P+V P Q + +EN + + + +S T +K+T Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE----PQSQTNTTADTEQPAKETS 1176 Query: 404 INLEDLRS 411 N+E + Sbjct: 1177 SNVEQPVT 1184
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 4e-04 Identities = 31/219 (14%), Positives = 73/219 (33%), Gaps = 4/219 (1%) Query: 748 EAKKKLEESKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAE 807 E + + E+ K ++ Q TE + E ++ Q + ++ E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 808 KKRCVKDLPKDLQKKVLAKESVKAYLDCVSQAKNEAEKKECEKLLTPEARKLLEEAKESV 867 + ++K+ AK + + + K+E + + P+A E + Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN--DPT 1152 Query: 868 KAYKDCVSQAKTEDEKKECEKLLTPEAKKLLEEEAKKSVKAYLDCVSQAKTEDEKKECEK 927 K+ SQ T + ++ K + ++ + E + + + T + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 928 LLTPEAKKKLEESKKSVKAYLDCVSQAKTEAEKKECEKL 966 + K ++SV++ V A T + + L Sbjct: 1213 SESSNKPK--NRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 36.2 bits (83), Expect = 0.002 Identities = 32/191 (16%), Positives = 73/191 (38%), Gaps = 2/191 (1%) Query: 800 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVKAYLDCVSQAKNEAEKKECEKLLTPEARK 858 + + E+ V + P ++ + + ++K + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 859 LLEEAKESVKAYKDCVSQAKTEDEKKECEKLLTPEAKKLLEEEAKKSVKAYLDCVSQAKT 918 + +EAK +VKA A++ E KE + T E + +EE K V + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 919 EDEKKECEKLLTPEAKKKLEESKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQ 978 + K+ + + E+ +V + SQ T A+ ++ K + ++ + + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIK-EPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 979 ALDCLKNAKTE 989 N+ E Sbjct: 1187 TTVNTGNSVVE 1197 Score = 32.7 bits (74), Expect = 0.020 Identities = 29/213 (13%), Positives = 65/213 (30%), Gaps = 10/213 (4%) Query: 1022 RARNEKEKKECEKLLTPEAKKKLEESKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKK 1081 + + + TP + S S ++R + + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEE---IARVDEAPVPPPAPATPSETTETV 1040 Query: 1082 LEESKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCV 1141 E SK+ K ++ Q TE + E ++ Q + ++ E + Sbjct: 1041 AENSKQESKT-VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 1142 KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKD 1201 ++K+ AK + + K+E + + P+A+ E Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN----- 1154 Query: 1202 CLSQARNEEERRACEKLLTPEARKLLEQEVKKS 1234 + + +++ A + E +EQ V +S Sbjct: 1155 -IKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Score = 31.2 bits (70), Expect = 0.048 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 4/187 (2%) Query: 623 KARNEKEKKECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 680 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 681 ESVKAYKDCVSQAKTEDEKKECEKLLTPEAKKLLEEEAKKSVKAYLDCVSQA--KTEDEK 738 E+ K + E ++ T E K+ E ++ K + + T Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 739 KECEKLLTPEAKKKLEESKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC 798 + E+ T + + + + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 799 LKNAKTE 805 N+ E Sbjct: 1191 TGNSVVE 1197
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 869 bits (2246), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%), Gaps = 1/522 (0%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 MGQAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EE ++QRAKDKISIKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQ+ELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNLGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTN GLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.2 bits (62), Expect = 0.044 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKITTLHQRHDDEEVTKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K + D +E+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSVQKKAAKHKGLQELNEINANPLNDNPNSNSSAETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.020 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 KGETILKALEFIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 77.0 bits (189), Expect = 7e-17 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 9/232 (3%) Query: 158 EEQLLPTLNDQEEKEKIKEEEKEEIKEEIKETPKEEKKPKDEETQEGEALKDEEVSKELE 217 +E +P E E E K+E K K E+ + Q E K+ + + + Sbjct: 1021 DEAPVPPPAPATPSET-TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN 1079 Query: 218 TQ-GEIKEETQEEQTKEQEPVKEQEPIKEQEPIKEETQENKEEKQEKTQDSPSVQELEAM 276 TQ E+ + E + + KE ++++E K ET++ +E + +Q SP ++ E + Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 277 QELVKEIQENSNGQEDKKETQEKTETPQDVEIPQEKTQEKTQEKTQEKTQEKTQEKTQEK 336 Q + +EN + KE Q +T T D E P ++T ++ E T T E Sbjct: 1140 QPQAEPAREND-PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 337 TQEKTQEKTQ-EKTQESAETPQEKETQELEIPKEETQEKTETPQDVETPQAQ 387 + T TQ ES+ P+ + + + + P + Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSV-----RSVPHNVEPATTSSNDRS 1245 Score = 68.6 bits (167), Expect = 3e-14 Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 7/261 (2%) Query: 224 EETQEEQTKEQEPVKEQEPIKEQEPIKEETQENKEEKQEKTQDSPSVQELEAMQELVKEI 283 E + QT + + I+ P E E P+ E V E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 284 QENSNGQEDKKETQEKTETPQDVEIPQEKTQEKTQEKTQEKTQEKTQEKTQEKTQEKTQE 343 + + +K E T Q+ E+ +E K+ K +T E Q E + +T E Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKE---AKSNVKANTQTNEVAQSG-SETKETQTTE 1099 Query: 344 KTQEKTQESAETPQEKETQELEIPKEETQEKTETPQDVETPQAQEKETQEDHYESIEDIP 403 + T E E + + + E+PK +Q + Q E + D +I++ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 404 EPVMAKAMGEELPFLNEAVAKTPNNENDTETPKESVIKTPQEKEESDKTSSPLELRLNLQ 463 A E+ + + P E+ T SV++ P+ + + Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVNSESS 1216 Query: 464 DLLKSLNQESLKSLLENKTLS 484 + K+ ++ S++S+ N + Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPA 1237 Score = 63.9 bits (155), Expect = 8e-13 Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 9/268 (3%) Query: 167 DQEEKEKIKEEEKEEIKEEIKETPKEEKKPKDEETQEGEALKDEEVSKELETQGEIKEET 226 + E++ + + I+ +E + EA E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 227 --QEEQTKEQEPVKEQEPIKEQEPIKEETQENKEEKQEKTQDSPSVQELEAMQELVKEIQ 284 QE +T E+ E + + +E + N + + + + S E + Q + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 285 ENSNGQEDKKETQEKTETPQDVEIPQEKTQEKTQEKTQEKTQEKTQEKTQEKTQEKTQEK 344 +E K EKT+ E+P+ +Q +++ E Q + + + +E Sbjct: 1104 ATVEKEEKAKVETEKTQ-----EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 345 T-QEKTQESAETPQEKETQELEIPKEETQEKTETPQDVETP-QAQEKETQEDHYESIEDI 402 Q T E P ++ + +E P E+ VE P TQ + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 403 PEPVMAKAMGEELPFLNEAVAKTPNNEN 430 P+ +++ + A + + Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Score = 56.2 bits (135), Expect = 2e-10 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 13/216 (6%) Query: 151 AKEEPNNEEQLLPTLNDQEEKEKIKEEEKEEIKEEIKETPKEEKKPKDEETQEGEALKDE 210 +K NE+ T E +E K +K + + + +ETQ E + Sbjct: 1048 SKTVEKNEQDATETTAQNREVA---KEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 211 EVSKELETQGEIKEETQEEQTKEQEPVKEQEPIKEQEPIKEETQENKEEKQEKTQDSPSV 270 V E + + K ET E+T+E V Q K+++ + Q + + T + Sbjct: 1105 TV----EKEEKAKVET--EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 271 QELEAMQELVKEIQE--NSNGQEDKKETQEKTETPQDVEIPQEKTQEKTQEKTQEKTQEK 328 Q ++ + +SN ++ E+ VE P+ T TQ ++ K Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 329 TQEKTQEKTQEKTQEKTQEKTQESAETPQEKETQEL 364 + + + + + E S+ +L Sbjct: 1219 PKNRHRRSVR--SVPHNVEPATTSSNDRSTVALCDL 1252
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.012 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.006 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 8/62 (12%) Query: 18 FNLINKKEQEIEKLKRDRAYLEKKMAKELEKKDKGFHNKLE-------ELNKILQEINKR 70 ++ + K ++++EK R R +LEK++ K+LE K G NK+E + ++I INK Sbjct: 604 YDEVKKAQKDLEKSLRKREHLEKEVEKKLESKS-GNKNKMEAKAQANSQKDEIFALINKE 662 Query: 71 AN 72 AN Sbjct: 663 AN 664
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 53/271 (19%), Positives = 101/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFD 87 L+ S +T H L + LM + L LS + +S A+ + + Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++A G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLVGLK-----TRSLRKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLVSCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ V + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.002 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 72 EPEVQILKDLKPDFIVVVAYGKILPKEVLTIAP 104 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 1e-06 Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQ 110 + Q+ ++ QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREK 170 LE + + E EL ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKSLHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.023 Identities = 8/53 (15%), Positives = 23/53 (43%) Query: 245 SVDMVLDSLFGVFAARDRAKMRAEEIASLAENHLPALMEKKEKLEKLINSTQK 297 S +L++ + DR K ++ ++ + N++ +K + L + + Sbjct: 279 SSSKLLENFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCED 331
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.3 bits (65), Expect = 0.023 Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVSSLENYEKIYYQNAFKPKVQITFDNNSDTEIKNAL 214 + + D L P + +A + E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 7e-05 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 76 SGYGGTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANGANGTSGYQGVGSNPFPPIAG 135 SG G +N G++ TS N +NG G G GA+ SG+ +NP+ +G Sbjct: 2 SGGDGRGHNTGAHSTSGN-INGGPTGLGVGG--------GASDGSGW-SSENNPWGGGSG 51 Query: 136 SGSGSSGSSNSGYTPFMSGGGGIGGMGGG 164 SG G S G GG G GG Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 38.2 bits (88), Expect = 1e-04 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 12/114 (10%) Query: 67 SGASGMGYASGYGGTSNN-------AGSNGTSANGVNGTSGNNGAKGENGSSGANGANGT 119 SG G G+ +G TS N G G +++G +S NN G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 120 SGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPG 173 G G N +G GSG+ G+ ++ P G + G G + S G Sbjct: 62 HGNGGGNGN-----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.8 bits (87), Expect = 1e-04 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 49 GVSKSAYVSSKNGKGFSGSGASGMGYASGYGGTSNN----AGSNGTSANGVNGTSGNNGA 104 G + A+ +S N G G G + G G +S N GS G GN G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 105 KGENGSSGANGANGTSGYQGVGSNPFPPIAGSGSGSSGSSNSG 147 G +G G N ++ V FP ++ G+G S S Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFG-FPALSTPGAGGLAVSISA 109 Score = 35.5 bits (81), Expect = 8e-04 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 120 SGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPGLQNGSG 179 SG G G N +SG+ N G T GGG G G P+ G +GSG Sbjct: 2 SGGDGRGHN------TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGG--SGSG 53 Query: 180 ANGIDGTNGVNGANGTSGANGNNSANGGAASA 211 + G+ NG + G+ + +A A Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.4 bits (73), Expect = 0.006 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 9/94 (9%) Query: 111 SGANGANGTSGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPY 170 SG +G +G N G G G S SG++ + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG---------S 52 Query: 171 SPGLQNGSGANGIDGTNGVNGANGTSGANGNNSA 204 GSG G G +GT G +A Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 30.5 bits (68), Expect = 0.029 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 12/84 (14%) Query: 106 GENGSSGANGANGTSGYQGVGSNPFPPIAGSGSGSSGSSN-------SGYTPFMSGGGGI 158 G +G GA+ TSG G G+ GS SS SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 159 GGMGGGFIPFPYSPGLQNGSGANG 182 G GG + G +G+G N Sbjct: 63 GNGGGN-----GNSGGGSGTGGNL 81
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.036 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.9 bits (67), Expect = 0.031 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 502 NADTGNTDTGNTDTGNTDDMSNMNNG---NDDAGNANDDMSNGNDM 544 NAD+ +T NT+T T++ + + AG DDM N NDM Sbjct: 33 NADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDM 78
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.013 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 364 bits (936), Expect = e-127 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A++ SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.027 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADHRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERRSNFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 274 bits (701), Expect = 2e-76 Identities = 104/394 (26%), Positives = 180/394 (45%), Gaps = 14/394 (3%) Query: 2800 NAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMKDITSALGMLTKTSLKNNSTDVLQ 2859 + L L + + +A + T I + T+ L + K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2860 LNTYTQQMGRLAKLSNFASFDSTDFSERLSNLKNKRFADAVPNAMDVILKYSQRDKLKNN 2919 L+ RL LS + F++RL LK++RFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2920 LWATGVGGVSFVGNGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSKS 2974 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2975 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSADTLLSVINQSYKYSAWTTNARVNY 3034 +N + G+Y+R F + E F G++++ ++ LL +NQSY Y A++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3035 GYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVINNALYNQFKANADPSKKSVLTIDFAFE 3094 GYDF F +++LKP +G+ Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3095 NRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEVR 3154 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3155 LFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3188 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 32.3 bits (73), Expect = 0.042 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 5/100 (5%) Query: 701 SYTFDGINNAFNEDKFNGGSFSFNHAEQTDAFNNNSFNGGSFSFSAKQVDFNHNSFNGGV 760 SY+ + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 761 FNF---NNTPKVSFTDDTFNVNNQFKING-AQTTFTFNKG 796 + + + + + + N Q N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 895 bits (2315), Expect = 0.0 Identities = 287/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMSVLRKELRS 631 + + E FT + G QN FV LKP +ER + + + + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENSAEAVIHR-AKMELGK 656 Query: 632 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.0 bits (70), Expect = 0.004 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANSTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV + L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.042 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALRYQ 307 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGTLI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.034 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 27 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 81 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 82 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 133 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.7 bits (126), Expect = 3e-10 Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 P P P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 47.7 bits (113), Expect = 1e-08 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 A Q PP P P P P P P E P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 143 KVEEKKAVEEKKEE 156 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 40.0 bits (93), Expect = 6e-06 Identities = 18/57 (31%), Positives = 24/57 (42%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 130 + P P P+ P P P P PKP KPKP+P K + +PK+ Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 35.7 bits (82), Expect = 1e-04 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 40/218 (18%) Query: 101 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKAVEEKKEEKKIV 160 P P P +PEP+P+P PEP K V EK + K Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKPKP 98 Query: 161 EQKVEQKVEHKKVEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGE 220 + K +KV+ + + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 221 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 280 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 281 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 318 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 35.0 bits (80), Expect = 2e-04 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 132 P+ P P P P PKP K + +PK +P + Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.5 bits (71), Expect = 0.004 Identities = 14/56 (25%), Positives = 20/56 (35%) Query: 76 PSKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131 P + P K P P PKP++K + +PK KP +P Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.005 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALMALS 147 L Y F L+L+ +LPFS S + + +L PLL V ALMA++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 122 bits (308), Expect = 1e-36 Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKQAKLAFEMCAYRIKKYIGAYMVVLKKVDAILFTGRLGENYSALRES 59 R++E + GDK+A+LA + AYR+KK IG+Y + VD I+FT +GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALNKPTNDNPGNGLVDLSQPDAKIQILRIPTDEELEIALQTKKVLEK 116 + +GLE LG L+K N G +S D+K+ ++ +PT+EE IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 357 bits (918), Expect = e-125 Identities = 143/282 (50%), Positives = 194/282 (68%), Gaps = 6/282 (2%) Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 60 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMQEIGNLS 118 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 119 ILAPLHNPANLAGIEFVQKAHPHISQIAVFDTAFHATMPSYAYMYALPYELYEKYQIRRY 178 LAPLHNPAN+ GI+ + P + +AVFDTAFH TMP YAY+Y +PYE Y KY+IR+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGTSHHYVAKEAAKFLNIAYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238 GFHGTSH YV++ AA+ LN E I+ HLGNGSS AA++ GKS+DTSMG TPLEGL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGTRCGDIDPTVVEYIAQCANKSLEEVMKILNHESGLKGIYG 280 MGTR G IDP+++ Y+ + N S EEV+ ILN +SG+ GI G Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISG 278
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 1e-05 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 9/225 (4%) Query: 290 KKPEKTPIHAKTQTTAPIIVPENAPKIPLKTPPLMPLIGANPPPNNNAPTPLEKEETTKE 349 Q P + N + P+ P A TP E ET E Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---------TPSETTETVAE 1042 Query: 350 ASDNKEKTKESTNGAQSAQNTQASDKTSDNKSIAPKETIKHFTQQLKQEIQEYKPPMSKI 409 S + KT E + Q + + KS T + Q E +E + +K Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 410 SMDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSF 469 + + +E KVE + + V +T + + + + + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 470 SQDSSKEQPKEQLREPFKEQESTPLKENALKSYQENTDHENQETS 514 + + EQP ++ ++ + N S EN ++ T+ Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 46/228 (20%), Positives = 72/228 (31%), Gaps = 31/228 (13%) Query: 178 NTPSDSQKKETNNDKEKENLKENPI-DENHNTPNEESFLAIPTPYNTTLNDSEPQEGLVQ 236 N +N++E + E P+ TP+E + T +S+ + V+ Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKTVE 1052 Query: 237 ISPNPPTHYTIYPKR----NRFDDLTNPTNPPLKELKQETKEREPTPTKETLT------- 285 + T T + + + N + + ETKE + T TKET T Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 286 ----------PTTPKPATLKPIMSAPVMPASAPNLENDNKTENDKTPNHPKKEESPQENT 335 P + K S V P + P END T N K P + E Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTTADTEQP 1171 Query: 336 QEEMIKETIKENLKEEEKEVQNAPNFSPLTPTSTKKPVMVKELSENKE 383 +E + + N+ +P T V S NK Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 6e-06 Identities = 59/315 (18%), Positives = 105/315 (33%), Gaps = 67/315 (21%) Query: 35 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 94 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 95 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 148 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 149 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 208 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 209 EETMDSKTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 261 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 262 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFFQPLCG---MLADKIKRTQMLMVF 311 IF+ + + ++ M+ L I F + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 312 AITGLIVTPVVFYGI 326 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (288), Expect = 6e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 11 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVS 169 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 8e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 169 SAKAKLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 228 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 229 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 285 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 286 KNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 345 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 346 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 380 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEP 481 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.3 bits (83), Expect = 6e-05 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 14/201 (6%) Query: 57 IENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEGEEKMRN 115 I + + L L +LQMQ A E+ +A I + G+K G++EG + Sbjct: 25 IVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG---LAQ 78 Query: 116 ELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDIAKEVILKEVED 171 L + E K+Q + + + + + L AL+ L +A++ A++VI + Sbjct: 79 GLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTV 138 Query: 172 NSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNEAISKGG 228 ++ + + + L + L + L+V+P D +++ L + +L + + GG Sbjct: 139 DNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGG 198 Query: 229 VMITSSNGSLDGNLMERFKTL 249 +++ G LD ++ R++ L Sbjct: 199 CKVSADEGDLDASVATRWQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 554 bits (1430), Expect = 0.0 Identities = 178/582 (30%), Positives = 295/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKNYAQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K +Y LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDEALKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.6 bits (188), Expect = 7e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 28/184 (15%), Positives = 77/184 (41%), Gaps = 12/184 (6%) Query: 108 NVELLKKLGPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFTKMQETLDFIAERLKGVEKKKGVELFHKAN----KISGHQAISSDILEKGGI 218 + A + ++ + + R + + L + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 219 DN-FGLKYVKFGRADISVEKIVK-ENPEVIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQV 276 N + + +G +S++++ ++ +V+ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 277 YKLP 280 ++P Sbjct: 267 QRVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.6 bits (74), Expect = 0.002 Identities = 29/183 (15%), Positives = 73/183 (39%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIAERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + + R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFTTIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 132 bits (334), Expect = 3e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.5 bits (68), Expect = 0.009 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 196 KEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPKEIF 253 K +EE+ I D A+ + Q + ALK + R + A K+SK +MP EIF Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIF 420 Query: 254 NDKQFTYFKF 263 +D FTYF F Sbjct: 421 DDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHQRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 3e-08 Identities = 52/346 (15%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 VLITGAYGMVGQNTALYFKKNRPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDSVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLISRMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQ----------MPS-------VMNVGSGVDYSIEEYYEMVAQVLDYRGVFVKD 265 + I P+ V N+G+ + +Y + + L Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334