>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 58.8 bits (141), Expect = 4e-10 Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 61/286 (21%) Query: 40 GRRAKAINDQTLAIGSHAQVTGNRSIALGYDALSSKENSIAIGYMSHALGKSSVAIGGEY 99 G A A ++AIG+ A+ ++A+G ++++ NS+AIG +S ALG S+V G Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 100 NAGKENDYTTAKSDYSTAVGAVSKALEYGSTALGHRAYAFAKNAISIGFYSEANGVGSIA 159 A K+ A+G RA + +++GF S+A+ S+A Sbjct: 122 TAQKD------------------------GVAIGARAST-SDTGVAVGFNSKADAKNSVA 156 Query: 160 LGSDSNVKVDGG--VAIGNNSVSNRAAGVFGYAPSLKGEVATNATAQWKSTSGAVSVGDF 217 +G S+V + G +AIG+ S ++R +VS+G Sbjct: 157 IGHSSHVAANHGYSIAIGDRSKTDR--------------------------ENSVSIGH- 189 Query: 218 GQNITRQIIGVAAGSDVTDAANVGQLKDLKTFVKENGWKLSVGGKNGKTVLMDSDVDFST 277 +++ RQ+ +AAG+ TDA NV QLK +EN K S D+ Sbjct: 190 -ESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVL 248 Query: 278 GSTNLKITKGNEDN-----KVKFDLAQDVTLTSLKAGTNTLDATGL 318 G N + + K F ++DV L KA +N++ T L Sbjct: 249 GIANNYTDSKSAETLENARKEAFAQSKDV-LNMAKAHSNSVARTTL 293 Score = 43.7 bits (102), Expect = 2e-05 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 20/141 (14%) Query: 2 ALAEGKKSIAIGGEGRWEDNPIPPEGRTIAQGEESIAIGRRAKAINDQTLAIGSHAQVTG 61 A A+G SIAIG +G +A G SIA G + AI + A+G A G Sbjct: 65 ASAKGIHSIAIGATAE------AAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Query: 62 NRS------IALGYDALSSKENSIAIGYMSHALGKSSVAIGGEYNAGKENDYTTAKSDYS 115 S +A+G A S+ + +A+G+ S A K+SVAIG + + A YS Sbjct: 119 AASTAQKDGVAIGARA-STSDTGVAVGFNSKADAKNSVAIG-------HSSHVAANHGYS 170 Query: 116 TAVGAVSKALEYGSTALGHRA 136 A+G SK S ++GH + Sbjct: 171 IAIGDRSKTDRENSVSIGHES 191 Score = 41.0 bits (95), Expect = 1e-04 Identities = 28/97 (28%), Positives = 46/97 (47%) Query: 4908 YTDQQMKIVLDDAKKYTDEHLKDMVNNGVDEAKSYTDIKFETLNYAIEDVRKEARQAAAI 4967 Y D + L A YTD + + + E+ YTD KF L+ ++ + + A Sbjct: 329 YADSKSSHTLKTANSYTDVTVSNSTKKAIRESNQYTDHKFRQLDNRLDKLDTRVDKGLAS 388 Query: 4968 GLAVSNLRYYDIPGSVSISFGSGLWRSQSAFAVGAGY 5004 A+++L G V+ + G G +RS A A+G+GY Sbjct: 389 SAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGY 425
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.004 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 49 GCNGTAAYYNISSRTGYSGSGGAGGVGGNLGLATDEHP--GLAKGGNGYAGSGISGNGGD 106 G N A + + G +G G GG G +++ +P G + G + G GNGG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG- 66 Query: 107 AGGDTSRGGSGGMGQGSHSSGKAGRGFGA 135 G S GGSG G S + GF A Sbjct: 67 -GNGNSGGGSGTGGNLSAVAAPVAFGFPA 94
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 25.3 bits (55), Expect = 0.038 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 6 NFLCDLWLALSQFSRHGNMNDKDCTALVDTMSVI-EKALILKLQDEMPSMLKILTVLT-D 63 NF+ ++++ S F++ MN+ V S +++I+ P + +TV + D Sbjct: 8 NFVFLMFVSSSSFAQVIEMNNSSLRDFVTWYSKQTGESVIVS-----PDVKGTVTVYSSD 62 Query: 64 FGDSELPHSMHSLLRTY 80 L S+LR Sbjct: 63 VKPENLRDFFISVLRAN 79
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.6 bits (58), Expect = 0.031 Identities = 11/47 (23%), Positives = 16/47 (34%) Query: 65 QIKQVEKEPNQTSSEIVTEETSTVTEEPSFEKPKAPKASKPSTSTPQ 111 Q + ++ E ET E P +PK + T PQ Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142
>PF05860#haemagglutination activity domain. Length = 117 Score = 88.3 bits (219), Expect = 1e-22 Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 23/133 (17%) Query: 73 GSLFRPTVSEASNGVPLVDIARPNGQGLSHNKYDSFNVDAHGVILNNSTEEVSRSQLGGL 132 +L + +++ G L H+ + F+V G N+ Sbjct: 7 TTLPINSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNP----------- 54 Query: 133 VLGNGNLRGTGAAKVILNEVISANRSRLEGMSEVHGHAADVIIANPNGITCNGCGFINTP 192 + I++ V + S ++G+ + A++ + NPNGI ++ Sbjct: 55 ----------TNIQNIISRVTGGSVSNIDGLIRANA-TANLFLINPNGIIFGQNARLDIG 103 Query: 193 RVTLSTGQPIIGA 205 + + + Sbjct: 104 GSFVGSTANRLKF 116
>PF05860#haemagglutination activity domain. Length = 117 Score = 89.1 bits (221), Expect = 1e-22 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 26/143 (18%) Query: 43 AQIAVDPNANAAHRPDIVAAPNGVPSIDIVTPNGKGLSHNKYYDFNIGNPGVIWNNHAQE 102 AQI D + I+ T G L H+ + +F++ G + N+ Sbjct: 1 AQITPDTTLPI---NSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNN--- 53 Query: 103 VGQSQLGGIMPGNPHLRFTGSAKVILNEVTSSKRSALHGPGEVFGSPADVIIANPNGISC 162 + + I++ VT S + G + A++ + NPNGI Sbjct: 54 ------------------PTNIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIF 94 Query: 163 DGCGFINTPHATLTTGVPEIDAS 185 ++ + + + + + Sbjct: 95 GQNARLDIGGSFVGSTANRLKFA 117
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 32.9 bits (75), Expect = 3e-04 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Query: 10 QVLQSEFGLSQKDLADRL-----NVTQATVSRWL 38 +++ + +Q +L D L NVTQATVSR + Sbjct: 12 EIITANEIETQDELVDILKKDGYNVTQATVSRDI 45
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.1 bits (65), Expect = 0.033 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 113 SKEKDVKHNTESIQAKYEGDTDSIRNEYESDTETIPYNINNNIYNKKTNTIVLAKKEIGS 172 + +N E + D + N + ++IP I+ N Y ++ +V + + Sbjct: 431 YSTYKIPYNEEYEYRFNDSDNFPLNNISIEEVDSIPEIIDINPYKDNSDNLVFTQITSMT 490 Query: 173 ENLETNDLVEEPIEDDALKSQSEQIE 198 E + T+ + + L++Q E Sbjct: 491 EEVTTHT----ALSINYLQAQITNNE 512
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 34.1 bits (78), Expect = 0.001 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 300 QAIIQYPDLAMKIIGSTLS-PQASDSQKTLEFLRSKGYSNEDA----QAVAQYPDLAQKV 354 +A+++Y D A +G+ Q + L F+ G+S D AV+ + Sbjct: 88 RALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHF------T 141 Query: 355 IGNTLSPQEGYRTLTAEEKAEQGLPEDMAFQVSTSTGKIIPVQGGQRSIASGL 407 +G L QE TA P++ + +I+ G+++ GL Sbjct: 142 LGAVLEQQEH----TAALTDRPAAPDENLPPLLREALQIMDSDDGEQAFLHGL 190
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 138 bits (348), Expect = 3e-45 Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 7/137 (5%) Query: 1 MFKEFKEFALKGNMIDLAIGVIIGGAFGSLVNSIVNDIFMPIIGLITGGIDFSNMFIQLA 60 + KEF+EFA++GN++DLA+GVIIG AFG +V+S+V DI MP +GL+ GGIDF + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 GEKQATLSAAKAAGATISYGHFITLLINFLIIAWVLFFFVKAMNKMRRK-EEGESPNKTS 119 + + YG FI + +FLI+A+ +F +K +NK+ RK EE + + Sbjct: 63 ------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPT 116 Query: 120 SEEQLLTEIRDLLAKKK 136 EE LLTEIRDLL ++ Sbjct: 117 KEEVLLTEIRDLLKEQN 133
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.0 bits (83), Expect = 2e-04 Identities = 56/304 (18%), Positives = 100/304 (32%), Gaps = 47/304 (15%) Query: 76 GSIIFGHFGDKIGRKATLIASLLTMGLSTVIIGFLPTYETAGWFAPFLLTLCRIGQGMGL 135 G+ ++G D++G K L+ ++ +VI ++ LL + R QG G Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFF-------SLLIMARFIQGAGA 117 Query: 136 GGEWGGAVLLATENAPPEKR----GWYAMFPQLGVPIGLFLS--IAVYLGLLYFL----- 184 +++ P E R G +G +G + IA Y+ Y L Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI 177 Query: 185 ----------------DHDALVAWGWRIPFIASVVFMIIG----LWVRLSINETVQFKKN 224 I +VF ++ L ++ + F Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVS-VLSFLIF 236 Query: 225 LESQERVKVPIIDVFLKCPRILFLGIFSGMATFVL---FYLVTAYLLSYSTNHLQLSYYQ 281 ++ +V P +D L +G+ G F F + Y++ QLS + Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH---QLSTAE 293 Query: 282 ALQVEI-VGAIFCGIFTIITGRLADRIRRRTLMIWVTIITGIYSFAIPYFLNSGVIGVLA 340 V I G + IF I G L DR ++ + + SF FL + Sbjct: 294 IGSVIIFPGTMSVIIFGYIGGILVDRRGPL-YVLNIGVTFLSVSFLTASFLLETTSWFMT 352 Query: 341 MSVI 344 + ++ Sbjct: 353 IIIV 356
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 100 bits (251), Expect = 2e-23 Identities = 77/346 (22%), Positives = 136/346 (39%), Gaps = 8/346 (2%) Query: 1496 GAVSTSSHSLADQMILCPSAQEQPSPQL-SEKLSVSDFLTTPSTDAVLSMFVAPAM-VFH 1553 GA + + A Q P QP P+ + + L+ + AV + V A +++ Sbjct: 568 GAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWY 627 Query: 1554 NEMQSVRAGRGILDKSKKNTVLWTYAIKSKESITTEHIDFKLDQT--GIVLGINGLSEWE 1611 E ++ G L + W ++ + + DQ G LG + Sbjct: 628 AESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRA-GRRFDQKVAGFELGADHAVAVA 686 Query: 1612 NGDFYIGGFGSYDHARVAHARGGTSGINSYGIGAYVTYLDHSGWYLDSILKYNHYQNTLK 1671 G +++GG Y G +S +G Y TY+ SG+YLD+ L+ + +N K Sbjct: 687 GGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFK 746 Query: 1672 AVSTNGLGIEGTYTQWAVGSSFEVGYRLQTSQSSWLQPYGQFTWLKVEGKEIKLSNDMTG 1731 ++G ++G Y VG+S E G R + +L+P + + G + +N + Sbjct: 747 VAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRV 806 Query: 1732 DMRPFTSLRSEVGLSLGYEFGSRMNSSSLAYITAAWMREHKDDNQTLINQ-RHPFTTDVS 1790 +S+ +GL +G YI A+ ++E N H T++ Sbjct: 807 RDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAH--RTELR 864 Query: 1791 GNAGKLGIGLSSLVSEKLKFYGEAHYIKGRKTKQSLQGIIGVRYSF 1836 G +LG+G+++ + Y Y KG K G RYS+ Sbjct: 865 GTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910 Score = 58.5 bits (141), Expect = 2e-10 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 392 VNIQNLKGNGRVIFTSLGIGKHYSELNIDNLSGSLHFDFNIDFVKHLKDYLVIKESGSGS 451 V L +G V F + L ++ L+GS F N+ L D LV+ + SG Sbjct: 448 VGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQ 507 Query: 452 HTISVADSGGEMTNSSHKKFKLISDHSGNAHFTLTNTFGEKIETIDAGTYRYRL 505 H + V +SG E S++ + + A FTL N G+ +D GTYRYRL Sbjct: 508 HRLWVRNSGSE-PASANTLLLVQTPLGSAATFTLANKDGK----VDIGTYRYRL 556 Score = 50.8 bits (121), Expect = 6e-08 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 10/120 (8%) Query: 1270 DDKSTHIQQLSGVGKVIFTSSEDSLYYSKLYVDELSGNLHFDFNVSLAEGKGDYLFVKNG 1329 D+ + +L+ G V F ++ + L V+ L+G+ F NV G D L V Sbjct: 444 DNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQD 503 Query: 1330 -SGFHTISVLDSGIEIVEPSSAE--LDLILDQSGGASFTLQSFSGAKIPIVDGGTYMYGL 1386 SG H + V +SG EP+SA L + A+FTL + G VD GTY Y L Sbjct: 504 ASGQHRLWVRNSG---SEPASANTLLLVQTPLGSAATFTLANKDGK----VDIGTYRYRL 556 Score = 46.6 bits (110), Expect = 1e-06 Identities = 52/178 (29%), Positives = 68/178 (38%), Gaps = 27/178 (15%) Query: 816 MDGESSLIE-NLSGDGSVIFTSTVFNPHYSKLEVGNLSGSLHFRLNTNFEEQRGDYLLIE 874 M S++ L+ DGSV F + L V L+GS FR+N + D L++ Sbjct: 442 MTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVM 501 Query: 875 KG-EGHHTISVIDSGIEIANSSLETQNLVLELDLINEKSGNAHFALSDFSGEEISAIDGG 933 + G H + V +SG E A S T LV A F L++ G +D G Sbjct: 502 QDASGQHRLWVRNSGSEPA--SANTLLLVQT-----PLGSAATFTLANKDG----KVDIG 550 Query: 934 VYMYDLKKKDHNGGKIWYL-----------APLGTPSTPVIPAPHAEYPVNKLPEKEE 980 Y Y L NG W L AP P P P P E P + P E Sbjct: 551 TYRYRLAA---NGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRE 605
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 143 bits (361), Expect = 4e-37 Identities = 115/469 (24%), Positives = 182/469 (38%), Gaps = 29/469 (6%) Query: 391 KLSGEGSVIFAFTGSDPYYSQLHVNNLSGSLHFAFNTTIAQNRGDYLFVEKGI-GNHTIS 449 +L+ +GSV F + L VN L+GS F N D L V + G H + Sbjct: 452 RLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLW 511 Query: 450 VADSGVEITDPFSNKRDLITDQSGGAHFTLTDLKGVNINAIDGGTYMYGLKERKDENGKV 509 V +SG E + + T A FTL + G +D GTY Y L + NG+ Sbjct: 512 VRNSGSE-PASANTLLLVQTPLGSAATFTLANKDG----KVDIGTYRYRLAA--NGNGQW 564 Query: 510 WFLSADRLSGPENSI---PDPTNPFVPGGTATTPSTDAVLTSSVVPGLIFNNELQTVRNG 566 + A P+ + P P P P A P A S N V Sbjct: 565 SLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNT--GGVGLA 622 Query: 567 RKIW-------NRNRKGIEL-------WTYGIKSRERIATGHTH-FKLGQTGLVFGADQL 611 +W ++ + L W G R+++ F G GAD Sbjct: 623 STLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHA 682 Query: 612 NELRHGELYVGGFASYDQARISHARGGDSDLSSYSIGTYATYFDHRGWYMDGVLKYNYYR 671 + G ++GG A Y + G S +G YATY G+Y+D L+ + Sbjct: 683 VAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLE 742 Query: 672 DNLKAISTNGLAIQSRYNQWAIGGSFEIGCYFEPAQNTWMQPYIKLTGLQVEGKKIKLSN 731 ++ K ++G A++ +Y +G S E G F A +++P +L + G + +N Sbjct: 743 NDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAAN 802 Query: 732 GMIGDLRPLISFRSEVGLTAGHEFFVNSETSLTAYIMAAWLRENINNNSAIINNQHKFIT 791 G+ S +GL G + + YI A+ L+E + + N T Sbjct: 803 GLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQE-FDGAGTVHTNGIAHRT 861 Query: 792 NLSGSAGKLGIGLNSSVNDKLTLYAEAHYLKGHKIKNALQGILGLRYNF 840 L G+ +LG+G+ +++ +LYA Y KG K+ G RY++ Sbjct: 862 ELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 99.0 bits (246), Expect = 3e-23 Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 5/244 (2%) Query: 614 DQT--GIVLGINGLSEWENGDFYIGGFGSYDHARVAHARGGTSGINSYGIGAYVTYLDHS 671 DQ G LG + G +++GG Y G +S +G Y TY+ S Sbjct: 669 DQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADS 728 Query: 672 GWYLDSILKYNHYQNTLKAVSTNGLGIEGTYTQWAVGSSFEVGYRLQTSQSSWLQPYGQF 731 G+YLD+ L+ + +N K ++G ++G Y VG+S E G R + +L+P + Sbjct: 729 GFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAEL 788 Query: 732 TWLKVEGKEIKLSNDMTGDMRPFTSLRSEVGLSLGYEFGSRMNSSSLAYITAAWMREHKD 791 + G + +N + +S+ +GL +G YI A+ ++E Sbjct: 789 AVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDG 848 Query: 792 DNQTLINQ-RHPFTTDVSGNAGKLGIGLSSLVSEKLKFYGEAHYIKGRKTKQSLQGIIGV 850 N H T++ G +LG+G+++ + Y Y KG K G Sbjct: 849 AGTVHTNGIAH--RTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGY 906 Query: 851 RYSF 854 RYS+ Sbjct: 907 RYSW 910 Score = 47.7 bits (113), Expect = 2e-07 Identities = 51/194 (26%), Positives = 72/194 (37%), Gaps = 39/194 (20%) Query: 289 DGTVIFTSIPYDPRHISLHVEKLSGDLHFRFNISAAGDVSDYLSI-DDGRGNHKIRVADS 347 DG+V F R L V L+G FR N+ A +SD L + D G H++ V +S Sbjct: 456 DGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNS 515 Query: 348 GREITGPLSQRNSFVTEFPLITDRSHNGGANFTLADLSGKDITAVDSGVYQYQLLKRERC 407 G E S T + T A FTLA+ GK VD G Y+Y+L Sbjct: 516 GSEPA-------SANTLLLVQTPLG--SAATFTLANKDGK----VDIGTYRYRL------ 556 Query: 408 ASSSGNATIWYLSRAGGTERSSPEVECVNRKTKIPVALSDQGASSGGKKTGRRPPTKKEQ 467 +++GN W L A P + + + P +P + Sbjct: 557 -AANGN-GQWSLVGAKAPPAPKPAPQPGPQPPQPP-----------------QPQPEAPA 597 Query: 468 PKQRPPRHLRETQN 481 P+ R L N Sbjct: 598 PQPPAGRELSAAAN 611
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 30/290 (10%) Query: 85 LFGAAIVTSILIFTVTLTTNFYLVVLIRFAAGIASAAMMIFGSI-----TVMQRSHNLRV 139 L GAA+ +I+ +++ + R AGI A + G+ +R+ + Sbjct: 80 LAGAAVDYAIMATA----PFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF 135 Query: 140 IASLYAGVGVGILLGNEYVIIGLSRSLNAKNIWFGAGLISIILLLLLFILFP-------- 191 ++ A G G++ G V+ GL + +F A ++ + L L P Sbjct: 136 MS---ACFGFGMVAGP--VLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERR 190 Query: 192 --RRVDTSQFAINEPLVHENIVWWELVLLYGLAGFGYIIVATYLPLMAKTFNFQLLASHL 249 RR + A +V + + + + G + A ++ F++ + Sbjct: 191 PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGI 250 Query: 250 WSFVGIAIVPSCF-IWLWG--ANRWGVLRCLMLNLLIQG-GCVLLTLFSQSPVLIVLSCI 305 S I+ S + G A R G R LML ++ G G +LL ++ + + + Sbjct: 251 -SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPI-MV 308 Query: 306 GFGFTFMGTTSLVMPLAKRLHTPYGINLLGLAILTYSIGQILGPLLTSFL 355 +G +L L++++ L G S+ I+GPLL + + Sbjct: 309 LLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.043 Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 8/129 (6%) Query: 91 ELNNSNENLNKFSERAKKAAQA----KWEKHHKAKTMSDAKNAKHDANGMLKDAKHDACG 146 ELN +NE++ + ER KA Q K E KT++DA N HD Sbjct: 329 ELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRF----AHDPMA 384 Query: 147 DFSNAQAMLNDAINNNNNIYNKKTKTIVLAKKEIGSENLQTTDLVHKPIEVHDLESHAEQ 206 M N K A KE + + + + D + AE Sbjct: 385 GGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAEN 444 Query: 207 IETVETNHP 215 E N P Sbjct: 445 NLNDEKNKP 453
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 34.0 bits (77), Expect = 0.001 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%) Query: 72 WKIVPNLWGVIVGEPSTMKTGTMDAALEPLYAFQDEWHQEWVKKKK-------QQETKEI 124 W IVPN + + +P ++K+ M +A +QE++K KK +E +E Sbjct: 86 WSIVPNSNHIFI-QPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQ 144 Query: 125 LSELDK-REKKKQAYKALKDQDEEQ 148 L+K +E K+QA KA KD+ E++ Sbjct: 145 KKALEKEKEAKEQAQKAQKDKREKR 169
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 31.4 bits (71), Expect = 0.014 Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 24/162 (14%) Query: 258 SSTGYARYSAGLKLENILGLNDAWNFSYQRSQTDYWGGSEQEGHSNNISASVSIPYGYWT 317 + R L + LG S S YWG S A ++ + Sbjct: 520 NLAYNKRGKLQLTVTQQLGRTSTLYLSG--SHQTYWGTS---NVDEQFQAGLNTAFEDIN 574 Query: 318 FGLNGTVYNYQ-------------SIIHGNFTDIETTGDSSELHASTSRVLHRDSVSLTT 364 + L+ ++ +I ++ ++ AS S D T Sbjct: 575 WTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMS--HDLNGRMT 632 Query: 365 LNVGLSYK----RTNNYLLGNKIEVGSRQYSVANFGISHSRQ 402 G+ +Y + G S + + + + Sbjct: 633 NLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYR 674
>PF05860#haemagglutination activity domain. Length = 117 Score = 94.5 bits (235), Expect = 1e-24 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 26/143 (18%) Query: 43 AQIAVDASAGAGYRPDIVAAPNGVPSIDIVTPNSSGLSHNKYNDFNIGNGGVIWNNHAQE 102 AQI D + + I+ T S L H+ + +F++ G + N+ Sbjct: 1 AQITPDTTLPI---NSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNN--- 53 Query: 103 VGQSQLGGIMPGNPHLRVTGSAKVILNEVTSSKRSALNGPGEVFGRPADVIIANPNGISC 162 + + I++ VT S ++G A++ + NPNGI Sbjct: 54 ------------------PTNIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIF 94 Query: 163 DGCGFINTPHATLTTGVPEIDAS 185 ++ + + + + + Sbjct: 95 GQNARLDIGGSFVGSTANRLKFA 117
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.022 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 222 DNSGWNRLNMLMNAGHGFARNYGTTTNNSTSSKMEGNSPWKNAGVIGSLALQAAPMAFGY 281 D SGW+ N G G ++G + + + +G G+L+ AAP+AFG+ Sbjct: 35 DGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG--NGNSGGGSGTGGNLSAVAAPVAFGF 92 Query: 282 MAGGPMGA 289 A GA Sbjct: 93 PALSTPGA 100
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.4 bits (68), Expect = 0.025 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 235 VGAASGALHGAGEGEGFGNTLTSTLSGAGLGAGGALAGSALGHLAGSTVGGIRRLFSPS 293 +G G L + G G G L L G + G+ GSALG G +G +PS Sbjct: 69 LGGGLGGLGSSLGGLG-GGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAMNPS 126
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.8 bits (147), Expect = 3e-11 Identities = 49/354 (13%), Positives = 116/354 (32%), Gaps = 34/354 (9%) Query: 279 AKQIAEASKTLSEEAKQTAADALTASKDAKSQSETAVSRSEEAKALSEQSKGACDEFKAS 338 Q + + + Q ++ ++ + ++ + A SE ++ + K Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE 1047 Query: 339 VASVEKVAEAAKTGVEQASQTASEAKGIAETAKSTADSATAKAEQAQQEASEASRLASEA 398 +VEK + A Q + A EAK + A++ T + Q+ E E ++ Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAK-----SNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 399 KVVAEQALQADRQAVREGSESTKSLVEAVQKKTEEAERVAQDSKRVCEETKQLATEAKNA 458 E+ +A + + + + +++ E + + R E + + + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR--ENDPTVNIKEPQS 1160 Query: 459 STNALTEATAAKEKASRAL-------TTVNDVKNISE--EVKGLAEKASRASTEAQKTSD 509 TN + ++ S + TTVN ++ E E A ++E+ Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 510 QALREATSAKTTADMASSTATDAKGSAEQAQTVSEEAKT------------LAQTSKNAC 557 R + + ++T+++ + + S K Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVS 1280 Query: 558 DEIKQTIGDVKSVAENALSTATTAKQKGDEISQ----QISESFTKSGEAKTLAE 607 I Q + + + + + T+ K SQ + T+ G +T++ Sbjct: 1281 QHISQLEMN--NEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTISN 1332 Score = 47.8 bits (113), Expect = 3e-07 Identities = 41/287 (14%), Positives = 108/287 (37%), Gaps = 5/287 (1%) Query: 374 ADSATAKAEQAQQEASEASRLASEAKVVAEQALQADRQAVREGSESTKSL-VEAVQKKTE 432 +++ AE ++QE+ + +A Q + ++A +T++ V +T+ Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 433 EAER-VAQDSKRVCEETKQLATEAKNASTNALTEATAAKEKASRALTTVNDVKNISEEVK 491 E + +++ V +E K K +T + K++ S + + ++ Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 492 GLAEKASRASTEAQKTSDQALREATSAKTTADMASSTATDAKGSAEQAQTVSEEAKTLAQ 551 + E S+ +T A ++Q +E +S S+T E + + Sbjct: 1154 NIKEPQSQTNTTA--DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 552 TSKNACDEIKQTIGDVKSVAENALSTATTAKQKGDEISQQISESFTKSGEAKTLAE-EAK 610 S+++ + V+SV N T++ + ++ + T + + A+ + Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFV 1271 Query: 611 RLASTSQETAEEAKVKAASVERIATEANQTASSSKSVSEEAKEEASK 657 L + ++++ + + + T+ + S + + +SK Sbjct: 1272 ALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSK 1318 Score = 46.2 bits (109), Expect = 8e-07 Identities = 43/354 (12%), Positives = 106/354 (29%), Gaps = 27/354 (7%) Query: 174 AKRLADESKTIATRAEQTAREASQTATETTQVAAKAVATCHEVKTVATQASLKADGAKQT 233 + D + Q + + E +A T + A+ +KQ Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE 1047 Query: 234 ADDAKDIAEKAKELSEGTTSSITELTKTTSQVQTAVEKALTDLRDAKQIAEASKTLSEEA 293 + + + A E TT+Q + ++A ++++ Q E ++ E Sbjct: 1048 SKTVEKNEQDATE--------------TTAQNREVAKEAKSNVKANTQTNEVAQ-SGSET 1092 Query: 294 KQTAADALTASKDAKSQSETAVSRSEEAKALSEQSKGACDEFKASVASVEKVAEAAKTGV 353 K+T + + + + V + + S+ + + ++ + Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 354 EQASQTASEAKGIAETAKSTADSATAKAEQAQQEASEASRLASEAKVVAEQALQADRQAV 413 + S+ A+T + ++++ + + + + + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 414 REGSESTKSLVEAVQKKTEEAERVAQDSKRVCEETKQLATEAKNASTNALTEATAAKEKA 473 E S K+ + V + + + +T A T+ T A + +A Sbjct: 1213 SESSNKPKN------RHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Query: 474 SRALTTVNDVKNISEEVKGLAEKASRAS------TEAQKTSDQALREATSAKTT 521 +N K +S+ + L T K + S+K+T Sbjct: 1267 KAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKST 1320 Score = 36.2 bits (83), Expect = 8e-04 Identities = 45/320 (14%), Positives = 98/320 (30%), Gaps = 21/320 (6%) Query: 44 ETFAPLEQVVNARQESEKAMARANGAQQVAEEAKRVSEQALSEATKTGEAVTAATTTASL 103 T ++ V + + + +AR + A SE + A + + Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 104 AKDTADTAKGLAEEAKNASDAAKHMAEETKAAVDRASGEINGTKGSLATALQRFEEVKQV 163 A +T + +A+EAK+ A E V ++ E T+ + E+ Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNE-----VAQSGSETKETQTTETKETATVEK---- 1108 Query: 164 SENAVNISTEAKRLADESKTIATRAEQTAREASQTATETTQVAAKAVATCHEVKTVATQA 223 +AK ++++ + Q + Q +ET Q A+ + Sbjct: 1109 -------EEKAKVETEKTQEVPKVTSQVS--PKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 224 SLKADGAKQTADDAKDIAEKAKELSEGTTSSITELTKTTSQVQTAVEKALTDLRDAKQIA 283 S A + + + ++E TT + + T T ++ Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 284 EASKTLSEEAK-QTAADALTASKDAKSQSETAVSRSEEAKALSEQSKGACDEFKASVASV 342 + S + A T+S D + + ++ + LS+ A +V Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279 Query: 343 EKVAEAAKTGVEQASQTASE 362 + ++ + Q Sbjct: 1280 SQ--HISQLEMNNEGQYNVW 1297
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 1e-04 Identities = 8/30 (26%), Positives = 16/30 (53%) Query: 136 ISSPRSGKVTTVLVKDGQPVEFGEPLIIVE 165 I + V ++VK+G+ V G+ L+ + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.6 bits (63), Expect = 0.037 Identities = 20/76 (26%), Positives = 33/76 (43%) Query: 27 LSPSLSNATSNPKTANHLNLEKFKTQLLEDSNFLSKLKEKMTPHPDSHHIQQIVREYLLT 86 LSPS S +N + L +F ++ + NF S +P H + ++ E L Sbjct: 270 LSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEELKK 329 Query: 87 HPEIMIEMQLILQDKL 102 E + +LI Q+ L Sbjct: 330 REEAKRQRELIKQENL 345
>cdtoxinb#Cytolethal distending toxin B signature. Length = 269 Score = 25.7 bits (56), Expect = 0.038 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 42 QTENGTVSYKV---EIAFTPSQVEAGLMY 67 QT T+ Y V +AF PS ++AG++Y Sbjct: 222 QTSQRTLDYAVAGNSVAFRPSPLQAGIVY 250
>PF06776#Invasion associated locus B Length = 214 Score = 130 bits (328), Expect = 3e-40 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 10/168 (5%) Query: 6 VYSAVSVLVGAAALFLIAGISANAQTLS------QGWYKVCSKQHD--VDICNTM-NTVL 56 A +L GA A+ L G S A W C + C + + V Sbjct: 47 RNGARLMLAGAMAIALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVVA 106 Query: 57 SNTGQPLTAFNLVEIKGKQNEKRIGIQVPTGRFLPEGVNIQIGDGFSKKIPYIICNGPSC 116 + +++ Q K + + P G LP G+ +++ + + ++ C C Sbjct: 107 EDRSNAGLTVIILK-TADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGC 165 Query: 117 IANDVLDDKLIAAMKSGTKMVVTTVNFRGSANPIEFSLNGFTAAYTGP 164 +A V+DDKL+ +++ SLNG Y Sbjct: 166 VAEVVMDDKLLGQLRTAKTATFIIFETPEEGIGFPLSLNGIGEGYDKL 213
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.024 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 15/104 (14%) Query: 9 LPVLIFIIVSAVIAGVLLITPYIVAYR-SPDPEKLSAYECGFNSFSDARMKFDIRFYLVS 67 P+L + A+ + V+ I PD +K+ N A+ F I+ LV Sbjct: 88 FPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI-------NPIEGAKRIFSIK-SLVE 139 Query: 68 ILFIIFDLEVAFLFPWAVSFKSIGMFGFWSMIVFLAILTIGFIY 111 L I + + + W + + G ++ L I I Sbjct: 140 FLKSILKVVLLSILIWII------IKGNLVTLLQLPTCGIECIT 177
>cloacin#Cloacin signature. Length = 551 Score = 45.1 bits (106), Expect = 4e-07 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 353 SGGDG--GDGGSYSGGSSLFGGGGGGGGSNNGNGGCGGESDKGGKGGKGGHNQADAGGGG 410 SGGDG + G++S ++ GG G G + G G S+ GG G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 411 GGYFPGKDAANYNSGDGGNGA 431 G G + SG GGN + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 42.4 bits (99), Expect = 3e-06 Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 301 GGGGKNGNGGATIIEGVLIANGGSIGSNGSGVTETVGKGGRGGYTSIKNFIFSGGDGGDG 360 GG G+ N GA G + NGG G G G G++S N G G Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGG-----GASDGSGWSSENN---PWGGGSGS 52 Query: 361 GSYSGGSSLFGGGGGGGGSNNGNGGCGGESDKGGKGGKGGHNQADAGGGG 410 G + GG S G GGG G S G+G G S G + G GG Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.1 bits (68), Expect = 0.009 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 144 AFVYREGKSPLIHVALFSDSPSGVAD-EALIAKVQAALDE 182 A + K+ I V D+P+ +A+ IA + AAL E Sbjct: 243 ALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIE 282
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.006 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 1 MKPSYRGSKRYLWWSFWFAWGVIFLLIAGG--LWGAPRIVDMAAISIPSMVAIIV 53 M ++R + +Y W+ WGV L G L+G+P++ M S++ +++ Sbjct: 1 MASTHRQANKYYWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVL 55
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.009 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 59 EQLINHFCFNGSGVRLLIPLGRDAER--RQKMMQALQK-GWSVDAAAAVSGMHVRT-AYR 114 E + +F G + R ++ AL + AA + G++ T + Sbjct: 410 ENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK 469 Query: 115 LKK 117 +++ Sbjct: 470 IRE 472
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 24.8 bits (54), Expect = 0.047 Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 2 MERNPYMVRDCLIALRSGFLKYEMNGIFLHAQDVRELTE 40 +E+ PY+V+ C+ +++ +++ I + + +E + Sbjct: 79 IEKAPYIVQQCVASVKKNSGDFKV--IIIDGNNYKEWVD 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.027 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 24/116 (20%) Query: 104 IPEKPAFQKNRIACEIIDTLTLAQSTGDMVMITLDAGNGKTETCR--HY---RATRPHVY 158 + A Q+ ++ L T +MIT ++G GK R H R P V Sbjct: 140 VGRSAAMQE---IYRVLARLMQTDLT---LMITGESGTGKELVARALHDYGKRRNGPFVA 193 Query: 159 LVTASPHTRSVHGILNDMAAELEVVEYNPTRLTRAIGKR---LERVGGGTLLIVDE 211 + A+ + E E+ + T A + E+ GGTL + DE Sbjct: 194 INMAA---------IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL-DE 239
>PF05860#haemagglutination activity domain. Length = 117 Score = 87.9 bits (218), Expect = 2e-22 Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 23/133 (17%) Query: 73 GSLFRPTVSEASNGVPLVDIARPNGQGLSHNKYDSFNVDAHGVILNNSTEEVSRSQLGGL 132 +L + +++ G L H+ + F+V G N+ Sbjct: 7 TTLPINSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNP----------- 54 Query: 133 VLGNGNLRGTGAAKVILNEVISANRSRLEGMSEVHGHAADVIIANPNGITCNGCGFINTP 192 + I++ V + S ++G+ + A++ + NPNGI ++ Sbjct: 55 ----------TNIQNIISRVTGGSVSNIDGLIRANA-TANLFLINPNGIIFGQNARLDIG 103 Query: 193 RVTLSTGQPIIGA 205 + + + Sbjct: 104 GSFVGSTANRLKF 116
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.8 bits (74), Expect = 0.015 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 14/144 (9%) Query: 973 LHHSMQNLKNNLGYQLSDVTSRLEDAKNQTATQISEHVGKITELTNHLNQAAQNTTESID 1032 L+ ++ KN S VT D +N I K+T+ ++LNQA + D Sbjct: 742 LNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQ--KVTDKVDNLNQAVSVAKATGD 799 Query: 1033 ---------SLTQHIGEQLSLSTQNAEQRIYAHNESLVNSLNKANSETLQTVTVIKEE-- 1081 L EQL+ Q E + S+ + TL + + E Sbjct: 800 FSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSVKNGVNGTLVGNGLSQAEAT 859 Query: 1082 -LVNNVSSILKQLNQSIYNFQENS 1104 L N S I K+LN + NF N+ Sbjct: 860 TLSKNFSDIKKELNAKLGNFNNNN 883
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 4e-24 Identities = 35/115 (30%), Positives = 57/115 (49%) Query: 3 RILLAEDDNDMRRFLVKALERAGYEVADFDNGISAYERLQEEPFSLLLTDIVMPEMDGIE 62 IL+A+DD +R L +AL RAGY+V N + + + L++TD+VMP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LARRATEIDPDLRVMFITGFAAVALNSNSDAPPDAKVLSKPFHLRELVNEVEKIL 117 L R + PDL V+ ++ + L KPF L EL+ + + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.3 bits (66), Expect = 0.023 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 14/110 (12%) Query: 38 QLPLPNNMKRQIFFWLGALIFFILFMFIFGSILLPFVAGIVLAY--------------FL 83 Q LP + L FF L + L +A V+ Y + Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122 Query: 84 NPIVQLLEKFGIRRVFGTVLITLFIVIIFVAALIILIPIISWQIQQFVSD 133 NPI F I+ + + L +V++ + II+ + +Q Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCG 172
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.8 bits (124), Expect = 1e-09 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 8/179 (4%) Query: 16 LCFLTFMGGVVLHATNVYIVITILPSLMNHIG-SEIYYSWVATVFITASLVGTSLATKIL 74 LC L+F VL+ + + LP + N +WV T F+ +GT++ K+ Sbjct: 19 LCILSFFS--VLNEMVLNVS---LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 75 GKLGPRNAYVISGVIFTLGTFLCSISSSMPLFLI-GRFIQGFGSGSLLSLSYSMVRIVFS 133 +LG + + +I G+ + + S LI RFIQG G+ + +L +V Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 134 PSLWSHALSVISGMWGISTLLGPAIGGLSVYYGLWQASFWIIGVLAIFFSLIAFKFLPK 192 A +I + + +GPAIGG+ +Y W +I ++ I K L K Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL-LIPMITIITVPFLMKLLKK 191
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 24.8 bits (54), Expect = 0.047 Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 1 MERNPYMVRDCLIALRSGFLKYEMNGIFLHAQDVRELTE 39 +E+ PY+V+ C+ +++ +++ I + + +E + Sbjct: 79 IEKAPYIVQQCVASVKKNSGDFKV--IIIDGNNYKEWVD 115
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 50.8 bits (121), Expect = 2e-08 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 6/173 (3%) Query: 727 AYGSVEHNTGFYVDGLLSYGFLKGDVL---TYAWGKTATLKANPLNVSLSAGKAFMTGHE 783 Y + ++GFY+D L L+ D + + + + + SL AG+ F T + Sbjct: 720 GYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRF-THAD 778 Query: 784 GLIFDPQIQLIYQHLQFDKFRDIDGFDVEMKKGDQWLMRIGGYLSKIFTASEKDHIIFFK 843 G +PQ +L +R +G V + G L R+G + K + + Sbjct: 779 GWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA-GGRQVQPY 837 Query: 844 GNIHFAHRFGEKQFVHLKDVFQLGAF-GSSLETGLGINAQFSSKVTLYSDLSY 895 F VH + G+ E GLG+ A +LY+ Y Sbjct: 838 IKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEY 890
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.3 bits (63), Expect = 0.005 Identities = 6/33 (18%), Positives = 14/33 (42%) Query: 55 EERDRVLREQNMVIKRREQAIEKLKKQIKKYEE 87 ++ DR+ + + + K I + K+ K Sbjct: 292 DKSDRLKSKSSDLQKIVMNNINRCTKKDKILNN 324
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.6 bits (123), Expect = 9e-09 Identities = 45/290 (15%), Positives = 88/290 (30%), Gaps = 50/290 (17%) Query: 24 SPTSPSHSQVSQSVPKPPVQKRPENLSHPPKVAPPPPLRMRDKTPADTKIQKPETQESSS 83 + T+P++ Q P V E ++ + PPP TP++T E + S Sbjct: 996 NITTPNNIQADV----PSVPSNNEEIARVDEAPVPPPA---PATPSETTETVAENSKQES 1048 Query: 84 AHIKTPPQRP--PRAKDREQNKQTAQESPS-------LQTKMAPPKPPRIKDKTPADT-- 132 ++ Q A++RE K+ + Q+ + + K A Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 133 ----KIQKPETQESSSAHIKTPPQRPPRA--------------------KDREQNKQTAQ 168 K++ +TQE + P++ + N Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT 1168 Query: 169 ESPSLQTKMAPPKPPRIKDKTPADTKIQKPETQESSSAHIKTPPPKPPRAKDREQNKQTA 228 E P+ +T +P + + T +T E E++ TP P NK Sbjct: 1169 EQPAKETSSNVEQP--VTESTTVNTGNSVVENPENT-----TPATTQPTVNSESSNKPKN 1221 Query: 229 QESPSLQTKMPPPTPPRIKDKTPANATIQVQTSTKNQNLETIAPSVRPKT 278 + S+++ P + ++ N N + + Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVA-LCDLTSTNTNAVLSDARAKAQF 1270 Score = 50.1 bits (119), Expect = 2e-08 Identities = 42/258 (16%), Positives = 76/258 (29%), Gaps = 40/258 (15%) Query: 71 TKIQKPETQESSSAHIKTPPQRPPRAKDREQNKQTAQESPSLQTKMAPPKPPRIKDKTPA 130 + PE E + + T P + + + AP PP TP+ Sbjct: 978 YDLYNPE-VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP--APATPS 1034 Query: 131 DTKIQKPETQESSSAHIKTPPQRP--PRAKDREQNKQTAQESPS-------LQTKMAPPK 181 +T E + S ++ Q A++RE K+ + Q+ + Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 182 PPRIKDKTPADT------KIQKPETQESSSAHIKTPP-------------PKPPRA---- 218 + K A K++ +TQE + P P Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 219 ---KDREQNKQTAQESPSLQTKMPPPTPPRIKDKTPANATIQVQTSTKNQNLETIAPSVR 275 + N E P+ +T + + T N V + +N T P+V Sbjct: 1155 IKEPQSQTNTTADTEQPAKET--SSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 276 PKTPQHRQVRQQSSSSSQ 293 ++ + R + S S Sbjct: 1213 SESSNKPKNRHRRSVRSV 1230 Score = 40.4 bits (94), Expect = 3e-05 Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 29/227 (12%) Query: 132 TKIQKPETQESSSAHIKTPPQRPPRAKDREQNKQTAQESPSLQTKMAPPKPPRIKDKTPA 191 + PE E + + T P + + + AP PP TP+ Sbjct: 978 YDLYNPE-VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPP--APATPS 1034 Query: 192 DTKIQKPET--QESSSAHIKTPPPKPPRAKDRE-------------------QNKQTAQE 230 +T E QES + A++RE Q+ +E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 231 SPSLQTKMPPPTPPRIK-----DKTPANATIQVQTSTKNQNLETIAPSVRPKTPQHRQVR 285 + + +TK K +KT + Q S K + ET+ P P V Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 286 QQSSSSSQNSESYAVPPSRKPHQIGDRQKSEAAIQKTAIRQPKPSQE 332 + S N+ + P+++ ++ +E+ T + + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 63.9 bits (155), Expect = 3e-12 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 10/177 (5%) Query: 934 VGAYGSLQHDTGFYMDGVLSYGLFKGDVLTLARGKVVALKGKQFS----GSLTSGRTFAI 989 VG Y + D+GFY+D L + D +A A+KGK + SL +GR F Sbjct: 718 VGGYATYIADSGFYLDATLRASRLEND-FKVAGSDGYAVKGKYRTHGVGASLEAGRRFTH 776 Query: 990 GDKGVVFDPQVQIVYQYLQFHQALDVDNLDVDLGKFHQWMGRVGGRLSKTLGISEKGREV 1049 D G +PQ ++ + L V +GR+G + K + ++ GR+V Sbjct: 777 AD-GWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA-GGRQV 834 Query: 1050 SFYSKLSYLHSFEDKQFVSFKNDFQL--GSFGSSLEAGLGFDARLSSKLSLHGDVTY 1104 Y K S L F+ V N G+ E GLG A L SL+ Y Sbjct: 835 QPYIKASVLQEFDGAGTV-HTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEY 890
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 64.3 bits (156), Expect = 2e-12 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 10/177 (5%) Query: 909 VGAYGSLQHDTGFYMDGVLSYGLFKGDVLTLARGKVVALKGKQFS----GSLTSGRTFAI 964 VG Y + D+GFY+D L + D +A A+KGK + SL +GR F Sbjct: 718 VGGYATYIADSGFYLDATLRASRLEND-FKVAGSDGYAVKGKYRTHGVGASLEAGRRFTH 776 Query: 965 GDKGVVFDPQVQIVYQYLQFHQALDVDNLDVDLGKFHQWMGRVGGRLSKTLGISEKGREV 1024 D G +PQ ++ + L V +GR+G + K + ++ GR+V Sbjct: 777 AD-GWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA-GGRQV 834 Query: 1025 SFYSKLSYLHSFEDKQFVSFKNDFQL--GSFGSSLEAGLGFDARLSSKLSLHGDVTY 1079 Y K S L F+ V N G+ E GLG A L SL+ Y Sbjct: 835 QPYIKASVLQEFDGAGTV-HTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEY 890
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 51.2 bits (122), Expect = 2e-08 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 12/199 (6%) Query: 694 VTAYGSMQHDTGFYIDGLFSYGVFKGDVQ---TKARGKTTTLKGTPLSASVIAGKSFMTG 750 V Y + D+GFY+D + D + + + + AS+ AG+ F T Sbjct: 718 VGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRF-TH 776 Query: 751 HKGLIFDPQVQVVYQNLRFDKASDIDGFDIEMGKLGQWVMRVGGRLSKTLAASEGGHIVS 810 G +PQ ++ +G + + R+G + K + + GG V Sbjct: 777 ADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA-GGRQVQ 835 Query: 811 FNGKLHLTNSFGGKQRVQFGDEFQLGAF-GSSLETGVGLKAQLSSNFALHGDVTYQHRLS 869 K + F G V G+ E G+G+ A L +L+ Y S Sbjct: 836 PYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEY----S 891 Query: 870 KGGFLGT--IFSGGLRYRF 886 KG L F G RY + Sbjct: 892 KGPKLAMPWTFHAGYRYSW 910
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 38.4 bits (89), Expect = 9e-05 Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 7/116 (6%) Query: 670 PSVPSTPSVISPSASGSPVPPSASSTPSVVVPLASGSPVPPSASPTSSVVVPLASGSPVP 729 P+ SV + + P + P VV P + VV+ P P Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE----KPKP 99 Query: 730 PSVSPTPSVVVPLASGSPVPPSVSPTPSVVVPLASGSPVSPSVPPTPSVVVSPASV 785 P P P P + +P P+ + P + Sbjct: 100 K---PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTS 152 Score = 38.0 bits (88), Expect = 1e-04 Identities = 23/137 (16%), Positives = 30/137 (21%), Gaps = 6/137 (4%) Query: 648 VFVLEVPNHPPVSPPASGSPIPPSV-PSTPSVISPSASGSPVPPSASSTPSVVVPLASGS 706 V +V P + P S + + P+ +V P P P Sbjct: 35 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 707 PVPPSASPTSSVVVPLASGSPVPPSVSPTPSVVVPLASGSPVPPSVSPTPSVVVPLASGS 766 P V V V AS PT S S Sbjct: 95 EKPKPKPKPKPKPVK-----KVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149 Query: 767 PVSPSVPPTPSVVVSPA 783 S + P P Sbjct: 150 VTSVASGPRALSRNQPQ 166 Score = 36.5 bits (84), Expect = 3e-04 Identities = 30/116 (25%), Positives = 33/116 (28%), Gaps = 8/116 (6%) Query: 697 SVVVPLASGSPVPPSASPTSSVVVPLASGSPVPPSVSPTPSVVVPLASGSPVPPSVSPTP 756 V P P P S +V A P P +V P P VV P Sbjct: 34 YTSVHQVIELPAPAQ--PISVTMVAPADLEP-PQAVQPPPEPVVEPEPEPEPIPEPPKEA 90 Query: 757 SVVVPLASGSPVSPSVPPTPSVVVSPASVSSVTPSVSEFFSHFELNTRVVVPQILT 812 VV+ P P V V P S S FE NT P T Sbjct: 91 PVVIE----KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE-NTAPARPTSST 141 Score = 36.5 bits (84), Expect = 4e-04 Identities = 26/148 (17%), Positives = 37/148 (25%), Gaps = 24/148 (16%) Query: 631 DSPDKDSHLTTT----SDTSDVFVLEVPNHPPVSPPASGSPIPPSVPSTPSVISPSASGS 686 + P ++ T +D ++ P P V P PIP P VI Sbjct: 42 ELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 687 PVPPSASSTPSVVVPLASGSPVPPSASPTSSVVVPLASGSPVPPSVSPTPSVVVPLASGS 746 P PV P V P+ + S + Sbjct: 102 KPKPK---------------PVKKVEQPKRDVKPV-----ESRPASPFENTAPARPTSST 141 Query: 747 PVPPSVSPTPSVVVPLASGSPVSPSVPP 774 + P SV + S P P Sbjct: 142 ATAATSKPVTSVASGPRALSRNQPQYPA 169 Score = 35.3 bits (81), Expect = 0.001 Identities = 22/121 (18%), Positives = 30/121 (24%), Gaps = 5/121 (4%) Query: 671 SVPSTPSVISPSASGSPVPPSASSTPSVVVPLASGSPVPPSASPTSSVVVPLASGSPVPP 730 V P+ P S + V P+ P V P P P +P Sbjct: 39 QVIELPAPAQPI-SVTMVAPADLEPPQAVQP----PPEPVVEPEPEPEPIPEPPKEAPVV 93 Query: 731 SVSPTPSVVVPLASGSPVPPSVSPTPSVVVPLASGSPVSPSVPPTPSVVVSPASVSSVTP 790 P P V V AS + PT S + S + Sbjct: 94 IEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSV 153 Query: 791 S 791 + Sbjct: 154 A 154 Score = 35.0 bits (80), Expect = 0.001 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 1/116 (0%) Query: 677 SVISPSASGSPVPPSASSTPSVVVPLASGSPVPPSASPTSSVVVPLASGSPVPPSVSPTP 736 ++ S P+ + SV + + P + P VV P Sbjct: 31 GLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 90 Query: 737 SVVVPLASGSPVPPSVSPTPSVVVPLASGSPV-SPSVPPTPSVVVSPASVSSVTPS 791 VV+ P P P+ P + P S ++ + Sbjct: 91 PVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 48.1 bits (114), Expect = 2e-07 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 12/196 (6%) Query: 705 YGSMQHDTGFYIDGLLSYGLFKGDVL---TPIRGKTATLKGNPLSLSLMSGQKITTGYEG 761 Y + D+GFY+D L + D + + + + SL +G++ T +G Sbjct: 721 YATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHA-DG 779 Query: 762 VVFNPQAQVVYQYLQFNETRDIDNFNIEMDKFDQWMVRIGGRLTKTLAAPEKDRDVSFYG 821 PQA++ R + + + + R+G + K + R V Y Sbjct: 780 WFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELA-GGRQVQPYI 838 Query: 822 KVHFAHDFGKERSVRFKDSFQLGAF-GSSLEAGLGLNARLSQKFAFHGDLVYQHKLSKGG 880 K +F +V G+ E GLG+ A L + + + Y SKG Sbjct: 839 KASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEY----SKGP 894 Query: 881 FSGI--SFSGGLRYRF 894 + +F G RY + Sbjct: 895 KLAMPWTFHAGYRYSW 910
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 65.5 bits (159), Expect = 1e-12 Identities = 109/558 (19%), Positives = 188/558 (33%), Gaps = 91/558 (16%) Query: 490 LADGSTLEGRAHVDENSNAELYLGGRSTWILQQQLPKDQHKVANDSSISLVSLMGGSSIH 549 LA + G ++ + + +TW+ + ++S++ + L S+ Sbjct: 417 LASQARWTGATRAVDSLSID-----NATWV-----------MTDNSNVGALRLASDGSVD 460 Query: 550 FKRQEPSSVDDHQTLRIGKGKGEVYRAREGASIFLNSYLNSGGALDHQKTDRVLIHGDVS 609 F Q+P+ + L + G +N + + G + D++++ D S Sbjct: 461 F--QQPAEAGRFKVLTVNTLAGS-------GLFRMNVFADLGLS------DKLVVMQDAS 505 Query: 610 GKTMLHVHAVAGSPGGYTGRGGNDEGLSIIQVSGEAKQDSFQLEGGYVALDELPYQYKLY 669 G+ L V P N L + A F L +D Y+Y Sbjct: 506 GQHRLWVRNSGSEPAS-----ANTLLLVQTPLGSAAT---FTLANKDGKVDIGTYRY--- 554 Query: 670 GYGPESDLGKANAGQRLVEGSGEFWDFRLESRSIDSDIKPKPDPRPTPPAPTPPSPTP-S 728 RL W + PKP P+P P P PP P P + Sbjct: 555 ---------------RLAANGNGQWSLV----GAKAPPAPKPAPQPGPQPPQPPQPQPEA 595 Query: 729 PAPEPHPVPKPGVRAVVPQVPTYLLLPNALRHLGLMNVSNQNKRLESLRI--AAGGLLES 786 PAP+P + A + L + L N +KRL LR+ AGG Sbjct: 596 PAPQPPAGRELSAAANAAVNTGGVGLASTL-WYAESNA--LSKRLGELRLNPDAGG---- 648 Query: 787 HEKPFFFVRGYGGNQRYISNLSALEYGYDGELSYNALEAGVLLKAIENMYGTTSFGIIGS 846 + RG+ Q+ + N + + + AG L A + +G Sbjct: 649 -----AWGRGFAQRQQ-LDNRAGRRF--------DQKVAGFELGADHAVAVAGGRWHLGG 694 Query: 847 YEKFSLQPVNVEQSQKSTFDKWSVAAYGGMQHDAGFYVDGLVSYGFLKGDV-LTTARGK- 904 ++ D V Y D+GFY+D + L+ D + + G Sbjct: 695 LAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYA 754 Query: 905 -TATLKGNPLSASLTTGKTFMVGEDGFVFDPQVQVVYQYLPFNKVRDVDGFDIDLGKIHQ 963 + + + ASL G+ F + F+ +PQ ++ R +G + Sbjct: 755 VKGKYRTHGVGASLEAGRRFTHADGWFL-EPQAELAVFRAGGGAYRAANGLRVRDEGGSS 813 Query: 964 WVGRVGGRLTKMLVAGDEAQVISFYGKLHLAHGFEGKQFVHFKDAFQLGAF-GSSLETGL 1022 +GR+G + K + + + Y K + F+G VH G+ E GL Sbjct: 814 VLGRLGLEVGKRIELAG-GRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGL 872 Query: 1023 GFNAQLSQNFALHGDLIY 1040 G A L + +L+ Y Sbjct: 873 GMAAALGRGHSLYASYEY 890
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 46.6 bits (110), Expect = 1e-06 Identities = 102/496 (20%), Positives = 171/496 (34%), Gaps = 67/496 (13%) Query: 1691 DSCVSSVRLI-NSAINFASSESAGKYQTLHIGNGNGTVYEAQGDAVIHLNARLNPHDSSG 1749 +S V ++RL + +++F AG+++ L TV G + +N + S Sbjct: 445 NSNVGALRLASDGSVDFQQPAEAGRFKVL-------TVNTLAGSGLFRMNVFADLGLS-- 495 Query: 1750 QQVTDRLIIHGDVSGKTKIHVRGDAGNGGNGQANAKIAHSVSVIQVYGQAKKDSFQLDGN 1809 D+L++ D SG+ ++ VR N G+ A+A ++ ++Q + +F L Sbjct: 496 ----DKLVVMQDASGQHRLWVR----NSGSEPASAN---TLLLVQTPLGSAA-TFTLANK 543 Query: 1810 YVALTNSPYKYTLRAYGPEMTSKQEHVQQKFVKDGGEFWNFRLENQYVKSAGSAGLPEQF 1869 + Y+Y L A G S K + P+ Sbjct: 544 DGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQ-----------PGPQPPQPPQPQ 592 Query: 1870 VRSVVPQVPTYLVLP---NSVFHTGLMDISNQNKQLETLRMTSTGMLEARENPALYLRGY 1926 + PQ P L N+ +TG + +++ E+ S + E R NP Sbjct: 593 PEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAES-NALSKRLGELRLNP-----DA 646 Query: 1927 GGSY-RYASDLSALEYGYGGELDYRGVEAGVLLQTIENTDSVLSFGVMGTYGRLSLQPLD 1985 GG++ R + L+ G D Q + + V GR L L Sbjct: 647 GGAWGRGFAQRQQLDNRAGRRFD----------QKVAGFELGADHAVAVAGGRWHLGGLA 696 Query: 1986 VEQSQKSAFDKWTAT--------VYGSMQHNIGFYVDGLLSYGLFNGDV-LTTARGK--T 2034 F Y + + GFY+D L D + + G Sbjct: 697 GYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVK 756 Query: 2035 ATLKGNPLSVSLSGGQTIATGYKGFVFDPQVQVVYQHLQFNKARDIDNFDIEMGNLDQWV 2094 + + + SL G+ T G+ +PQ ++ R + + + Sbjct: 757 GKYRTHGVGASLEAGRRF-THADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVL 815 Query: 2095 ARVGGRLTKTPTGSEGVDAVAFYGKLYLAHGFGGKQTVHFND-AFKLGAFGSALEAGLGF 2153 R+G + K + G V Y K + F G TVH N A + G+ E GLG Sbjct: 816 GRLGLEVGKRIELAGG-RQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGM 874 Query: 2154 NAKLLPQFSLHADILY 2169 A L SL+A Y Sbjct: 875 AAALGRGHSLYASYEY 890
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 55.7 bits (134), Expect = 5e-11 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 97 IGTLFEPDYEKIATLQPDLIIISSRTQAKYNDLSKIAPTIDLTVG-NDNSLEDIKRNVSI 155 +G EP+ E + ++P ++ S+ L++IAP L +++++ Sbjct: 81 VGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTE 140 Query: 156 LGKIFGKEQEAEKEIAKLNETLAEVHKNTQGKGTGLILMTS---GGKISALGPKSRFDIF 212 + + + AE +A+ + + + +G +L+T+ + GP S F Sbjct: 141 MADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEI 200 Query: 213 HSAFGIAPA 221 +GI A Sbjct: 201 LDEYGIPNA 209
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 25.9 bits (56), Expect = 0.039 Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 36 MLKDITALKERVQKLETEIDFLPDRDALQRLEVNMEKLNGRLNTLSAQLQPVAA 89 ML + +R+QK + D +L R ++E L L TLS Q QPV++ Sbjct: 535 MLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSS 588
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.007 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 1 MKPSYRGSKRYLWWSFWFAWGVIFLLIAGG--LWGAPRIVDMAAISIPSMVAIIV 53 M ++R + +Y W+ WGV L G L+G+P++ M S++ +++ Sbjct: 1 MASTHRQANKYYWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVL 55
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.3 bits (71), Expect = 0.007 Identities = 46/306 (15%), Positives = 108/306 (35%), Gaps = 28/306 (9%) Query: 1 MGKNKITFFIYSAVFLSEFSFFFVLPLLGN--SSLITAANVAFYLSGSVILESILMVTTT 58 M N+ I S V L ++P+L L+ + +V + + L +++ Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 59 GLLEKLS----RKLLMATAFILRSIAFLCVILSLTPSAWLVFFT-----LTAFSKAISKP 109 +L LS R+ ++ + ++ + I++ P W+++ +T + A++ Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYA--IMATAPFLWVLYIGRIVAGITGATGAVAGA 118 Query: 110 FLREILSEHLNGSTLKRALTLYSFFQNAAVVIAPLVA--MSAIKYNVSVFLMAFFAIISC 167 ++ +I R S +V P++ M + F A ++ Sbjct: 119 YIADITDGD----ERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNF 174 Query: 168 YLCILSIQIVYHYPHKNASVEKNKTTKKPFLSSLKTIGHNRSIAYLLVTALLCAFLMGVF 227 + HK + P +S + +A L+ + + V Sbjct: 175 LTGCFLL----PESHKGERRPLRREALNPL-ASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 228 ITTTTLLNKFDSNLAPYS-GIFFSIVGISICIWQGIINKHL--RLSDKSTFYLLGLMGSF 284 + + + + GI + GI + Q +I + RL ++ +LG++ Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER-RALMLGMIADG 288 Query: 285 SSFFLM 290 + + L+ Sbjct: 289 TGYILL 294
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 74.1 bits (182), Expect = 1e-16 Identities = 71/384 (18%), Positives = 138/384 (35%), Gaps = 17/384 (4%) Query: 11 SVHLVLITTLLSNVGVFMVVPFLAIYLSKLHSLS--AIEVGTIIGIAFWCQRAGSLFGGI 68 + ++L T L VG+ +++P L L L + G ++ + Q A + G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 69 LSDYVHIKKTMLLGLAMRIPGYLTIGFTHNFYILLLSCIFIGLGSSMYFPAAKSFLVKNV 128 LSD + +L+ LA Y + ++L + I G+ + A +++ Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADIT 124 Query: 129 SQTDKVDILATRAIFANIGTAIGPLLGMLILKIHPHLLFSLVGFIFVLLFLLNC-TLKES 187 ++ + G GP+LG L+ PH F + L FL C L ES Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 188 PGTTT--LSKINFSDFRKLLTNKTMLCVVLFTFLFTFLYIQLEVTIP-----LFGDQTFG 240 L + + + M V + F +QL +P +FG+ F Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAA--LMAVFFIMQLVGQVPAALWVIFGEDRFH 242 Query: 241 KSAPSYIFLLNALIV--IFFQIPVS-RWSCRENSKMPIVLSFIFFALSFFILHTLDHSYL 297 A + L A + Q ++ + R + ++L I + +L ++ Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWM 302 Query: 298 SLFLAIILFTFSEIIMRIRLDYDATNIDERLIASAFGIMSLSSAFGGMAGSYFGSLLYNK 357 F ++L I M + +DE G ++ ++ + G + +Y Sbjct: 303 -AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Query: 358 ALFGLSAWQMLSIASFSAAFLSLL 381 ++ + W ++ A+ L L Sbjct: 362 SITTWNGWAWIAGAALYLLCLPAL 385
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 98.0 bits (244), Expect = 3e-24 Identities = 78/350 (22%), Positives = 151/350 (43%), Gaps = 14/350 (4%) Query: 6 SYSKS---EKYVIYTVIISSILPLLDGSIVNVILPRLAHYFSAGENNIQWIVTSYFLATV 62 SYS+S ++ + I S +L+ ++NV LP +A+ F+ + W+ T++ L Sbjct: 4 SYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFS 63 Query: 63 PGLLMAAFMQGRIGIKKTWLLANCIFMLGSLGVGLSYN-FQTMISARIIQGFGTGLLLPL 121 G + + ++GIK+ L I GS+ + ++ F +I AR IQG G L Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 122 SQTIIALQFGQTRVRQAMGTIAVPTVFAPAFGPLVGASIAQYVSWRLLFFINIPLILLAL 181 ++A + +A G I GP +G IA Y+ W L I + I+ Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVP 183 Query: 182 TIGAKHLKTNKTEKTKFNLLAFLTFSLSLISFFYLTEARNINNNNILSIIALIAVISLIL 241 + K LK K F++ + S+ ++ F T + +I +I ++V+S ++ Sbjct: 184 FL-MKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFT-----TSYSISFLI--VSVLSFLI 235 Query: 242 FIVSNQKAKNKLIIFSGFTNVRYTLLMIMGLIASFLFYSFLVYFPLALAEAPHEKSLLLI 301 F+ +K + + N+ + + ++ G I F+ P + + H+ S I Sbjct: 236 FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDV-HQLSTAEI 294 Query: 302 GALLALQGVGAWIGRKFIYQKW-KEKTPFFMIGIGLLISSFGILCFGYTI 350 G+++ G + I +I + P +++ IG+ S L + + Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL 344
>PF06580#Sensor histidine kinase Length = 349 Score = 52.9 bits (127), Expect = 1e-09 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 37/224 (16%) Query: 266 HAEKERQRVEILLQDAS----------HRIGNSLGTVSSLLGLQLSRSKNEEVRSVLGAA 315 AE ++ ++ + Q+A H + N+L + +L+ + A Sbjct: 146 QAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALI-----LEDPTK-------A 193 Query: 316 RDRIQTISTAHRR-LRLSDDMETTLLAE--FLSSVVHDVELAVPFELRENITIHTNFKDC 372 R+ + ++S R LR S+ + +L E + S + + L+ I+ D Sbjct: 194 REMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDV 253 Query: 373 RLSSRDATTLGIILGELLTNSLKHAF-PSQREGHIYISFGPEANGQLMLIVEDDGVGMKS 431 ++ +++ L+ N +KH + G I + G + NG + L VE+ G Sbjct: 254 QVPP-------MLVQTLVENGIKHGIAQLPQGGKILLK-GTKDNGTVTLEVENTGSLALK 305 Query: 432 QTLEQKTGLG-RVVVEQLCMQFGEKPLFE-TSALGGTKIVIPLP 473 T ++ TG G + V E+L M +G + + + G ++ +P Sbjct: 306 NT-KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 6e-08 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 5/119 (4%) Query: 139 ATEVMIIEDEPLIALDIEQMVESLGHHVVGIARTRDEAVIMYHKKKPRLILADIQLADNS 198 +++ +D+ I + Q + G+ V L++ D+ + D Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD-E 60 Query: 199 SGIDAVNEILKND-RIPVIFITAF--PERLLTGERPEPTFLVTKPFNPDMVKALISQAL 254 + D + I K +PV+ ++A + + KPF+ + +I +AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 28.7 bits (64), Expect = 0.020 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 45 ADQLNQLKSQLNQMKELYSSLNAKPDISALKNL 77 +DQ N +KSQ + +++ N + I ALK+L Sbjct: 13 SDQYNFIKSQAYILANGHATANDRGVIQALKSL 45
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 1e-05 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 63 EKEYEAKAEERAREREEENRKAMEEYRAELRARHEKWKIDFEKRKA---------EIEKK 113 E + K E+ A E +NR+ +E ++ ++A + ++ + E Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 114 EAEEKAKEQAEQEAKE 129 E EEKAK + E+ + Sbjct: 1107 EKEEKAKVETEKTQEV 1122 Score = 31.2 bits (70), Expect = 0.001 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 10/110 (9%) Query: 21 EKTYSVAEFKKDKKLMEEWNAKCGFAGTSKNCENLRLAQLELEKEYEAKAEERAREREEE 80 E T +VAE K + E N + T++N E + A+ ++ + E A+ E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK--ANTQTNEVAQSGSET 1092 Query: 81 NRKAMEEYRAELRARHEKWKIDFEKRKAEIEKKEAEEKAKEQAEQEAKER 130 E + A EK + KA++E ++ +E K ++ K+ Sbjct: 1093 KETQTTE--TKETATVEK------EEKAKVETEKTQEVPKVTSQVSPKQE 1134 Score = 26.6 bits (58), Expect = 0.047 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 63 EKEYEAKAEERAREREEENRKAMEEYRAELRARHEKWKIDFEKRKAEIEK-KEAEEKAKE 121 EKE +AK E + +E + + + ++ + + + + KE + + Sbjct: 1107 EKEEKAKVE--TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 122 QAEQEAKER 130 A+ E + Sbjct: 1165 TADTEQPAK 1173
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.002 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 55 MRLAFLELQKEYEAQEAERERENDERYRKAMDK---AKAEMEADLAKMREENKKFRAEQE 111 MR E++ A + E + M+ AKA +EA A E +A E Sbjct: 174 MRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKARE----QAAAE 229 Query: 112 AKERAEEERRAKER 125 AK +AEE+ R + Sbjct: 230 AKRKAEEQARQQAA 243
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 202 bits (515), Expect = 7e-68 Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 4 KDIEQYIAEARSFDQDRMLASRRTTRASLAIAAISVIVALISSLAVITLTPLKTVEPFVI 63 +++ Y EA S+++D++ A+ R+ + + +A ++ +A +AV LTPLKTVEP+VI Sbjct: 8 DELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVI 67 Query: 64 RVDNSTGITEVVEALKEGPTNV-DEAITRYFAAKYVRCREGFAVEEVQHNFQTVSLLSSP 122 VD +TG + L T DEA+ +YF A YVR REG+ + F V ++S+ Sbjct: 68 TVDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSAR 127 Query: 123 EEQERFASWYGARNPQSPQILY-KHASVTVTIKSISFINQDVAQVRYYRTIHDNENNKEF 181 EQ+R++ +Y NPQSPQ + V V IK +SF+ +VAQV + + N+ + Sbjct: 128 PEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNSTK- 186 Query: 182 ITHWVATLTFEYINAPISVQNRLINPLGFIVNEYRTDPEV 221 T VAT+ ++ P +R NPLG+ V YR D EV Sbjct: 187 -TDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYRADVEV 225
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 40.2 bits (93), Expect = 7e-06 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 175 PRNWAY---TAQGSSILEPAAVYDNGKTTTFSFLGNQEIPAVYIVGSDGTESLVPKTTRG 231 PRN+ Y + S + P+ ++D+G T F F PA+++V DG S+ Sbjct: 398 PRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDP 457 Query: 232 NMV-------IVHAISARFTLRQGKNVLCIFNEAYQPKGINPDT 268 NM V+ I+ +F L + K ++ + N+ Y G NP T Sbjct: 458 NMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGY---GKNPLT 498 Score = 35.9 bits (82), Expect = 2e-04 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 10/111 (9%) Query: 52 SIRSSVQIEFSANEEIAHVAIGNSVAWEVAPAGNILFLKAREVQPITNLQVVTTKLDGSK 111 S+ + I+ +E I+++ G + W + P N +F++ + V+ + L K Sbjct: 60 SLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVK---------SNLMFEK 110 Query: 112 RSYQFELMVKDGEISSGQETYFLVKFRYPQEEAEQRRLAALLRQEKKQAQQ 162 + F LM +D + + +V P+E EQ++ ++ K+QAQ+ Sbjct: 111 EAVNFALMTRDYQ-EFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQK 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.029 Identities = 10/31 (32%), Positives = 21/31 (67%) Query: 168 CKFLERAVITQQNILISGKTGSGKTTLSKAL 198 + L R + T ++I+G++G+GK +++AL Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARAL 180
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.003 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 48 TSKNCENLRLAQLELEKEYEAKAE---ERSRKAKESFQKMVRDSEAKMKARLEKMDTENK 104 T EN + +EK + E + AKE+ + +++ A+ E + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 105 KILEKQRAKERAEEEQEAKERAAEEQQ 131 K+ A E+E++AK + Q+ Sbjct: 1097 TTETKETATV--EKEEKAKVETEKTQE 1121
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.001 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 62 LQKEYEAKEAERSRKIAEENRKRYEEFMAKQKARIKKMREENQKFLAEQR---AKRRAEE 118 L +E E A + K+ E + M A + EQ AKR+AEE Sbjct: 177 LDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEE 236 Query: 119 ERRAKER 125 + R + Sbjct: 237 QARQQAA 243
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.026 Identities = 69/364 (18%), Positives = 117/364 (32%), Gaps = 29/364 (7%) Query: 61 KAATEKVEKATEAADKASDAVKKAPNAVEKAAIDTVGKATEAADKASDAVKKAPNTVDKT 120 KAA E KA D + +K N + ATE A + A++ + Sbjct: 74 KAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERL--- 130 Query: 121 ATDTVGKATEAVNKASDAVKKAPNTVE--KAAIDTVEKATEAADKASDAVKKVPDAVEKA 178 + KA E K ++A +KA E + I+ + TE K ++A +K A Sbjct: 131 ---RLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEK-----RLA 182 Query: 179 AIDTVGKATEAADKASDAVKK--ASGVAEKAATDTVGKATEAADKASDAVKKAPNTVEKA 236 A+ KA E A K A + E ++ ++ A A Sbjct: 183 ALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQ 242 Query: 237 ATDTVGKATEAVNKAS--------------DAVKKASGVAEKAAADTVEKASGVADKTAT 282 A+ + E V K S ++ + AS Sbjct: 243 ASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRIN 302 Query: 283 DTVGKATEAADKASDAVKKASGVADKAATDAVKKASGVADKAATDAVKKASGVAEKAAAD 342 + + +A + S+ +A + K + + + DAV + Sbjct: 303 ADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATVSFYQTLTEK 362 Query: 343 TVEKASGVADKTATDTVGKATEAADKASDAVKKASDVADKAITDTAEKATETADKVSDAV 402 EK S +A + A + GK ++A A +K DV +K + A A Sbjct: 363 YGEKYSKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKADRDAIFNALASVKYD 422 Query: 403 EKAS 406 + A Sbjct: 423 DWAK 426
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 130 bits (327), Expect = 4e-39 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%) Query: 54 QEFTVNVGDRVFFSLDSSSLDADAERILTRQAEWLLHY--PYYSIMIEGHADERGTREYN 111 Q + V F+ + ++L + + L + L + S+++ G+ D G+ YN Sbjct: 211 QTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYN 270 Query: 112 LALGQRRAVAVRNYLVSLGVSAQRIQTISYGKERPVA--VCDD-------ISCWNQNRR 161 L +RRA +V +YL+S G+ A +I G+ PV CD+ I C +RR Sbjct: 271 QGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 49.7 bits (118), Expect = 2e-08 Identities = 40/230 (17%), Positives = 72/230 (31%), Gaps = 29/230 (12%) Query: 101 KEKPQSVETTPPPISNPSETSKLT--------ESVEAKTEDVPKVAPEMPLQALEDAPKV 152 + PP + PSET++ ++VE +D + + A E V Sbjct: 1017 IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 153 APEMPLQALEDAPKVAPETPLQALEDAPKVAPETPLQALEDAPKVAPEMPLQALEDASKV 212 + Q E A ++ + E ET E+ KV E + + S+V Sbjct: 1077 --KANTQTNEVA-----QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129 Query: 213 AP--EMPLQALEDAPKVAPEMPLQALEDAPKVAPEMPLQALEDALKVAPEMPLQALEDAP 270 +P E A P +++ + E K Q + ++ Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQ--SQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 271 PKLSLKPAHKSEEMISPKELAPTV----QKVPAE------QTVPQAPKIA 310 + ++ E +P PTV P ++VP + A Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 34.3 bits (78), Expect = 0.001 Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 22/166 (13%) Query: 50 PLMEEFSSQQGSVKAPIHAVPAVKPTTKPQEK--EDARHIGEGQRDSLAPFQPKEKPQSV 107 E + VP V P+++ E + E R++ KE PQS Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE-PQSQ 1161 Query: 108 ETTPPPISNPSETSKLTESVEAKTEDVPKVAPEMPLQALEDAPKVAPEMPLQALEDAPKV 167 T P++ + V + + E P Sbjct: 1162 TNTTADTEQPAKETS------------SNVEQPVTESTTVNTGNSVVENPENTTPAT--- 1206 Query: 168 APETPLQALEDAPKVAPETPLQALEDAPKVAPEMPLQALEDASKVA 213 T + PK ++++ E + D S VA Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPH----NVEPATTSSNDRSTVA 1248 Score = 32.0 bits (72), Expect = 0.007 Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 21/164 (12%) Query: 76 TKPQEKEDARHIGEGQRDSLAPFQPKEKPQSVETTPPPISNPSETSKLTESVEAKTEDVP 135 T+ E ++ + + ++ + + +E P+ P E E+ P Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP---QAEPARENDP 1151 Query: 136 KVAPEMP-----LQALEDAPK------VAPEMPLQALEDAPKVAPETPLQALEDAPKVAP 184 V + P A + P V + + E P Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT---TQ 1208 Query: 185 ETPLQALEDAPKVAPEMPLQAL----EDASKVAPEMPLQALEDA 224 T + PK ++++ E A+ + + AL D Sbjct: 1209 PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252
>PF05307#Bundlin Length = 193 Score = 27.5 bits (60), Expect = 0.014 Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 42 QKYEKGLNRVSAGRLMEISDILNVPISFFYADIITKQHALSSHDEVISNT 91 +KYEKGL+ + + ++ ++ + + F+Y + ++ EV+S T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57
>PF05307#Bundlin Length = 193 Score = 27.5 bits (60), Expect = 0.023 Identities = 11/50 (22%), Positives = 27/50 (54%) Query: 77 QKYEKGLNRVSAGRLMEISDILNVPISFFYADIITKQHALSSHDEIISNT 126 +KYEKGL+ + + ++ ++ + + F+Y + ++ E++S T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 39.8 bits (93), Expect = 5e-06 Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 20/219 (9%) Query: 27 DIAALCQELQRPRE---EVELIAVSKTVS-----IEDIRPLLQAGQSLFAENRVQEAAQK 78 D+ AL Q L R+ + +V K + + FA ++EA Sbjct: 10 DLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEEA--- 64 Query: 79 WLGLRQQFENIKLHLIGPLQSNKAAEAVKIFDVIQTVDREKIAKILAEEMQKQKRHIPCY 138 + LR++ + ++ + E + V K L K I Y Sbjct: 65 -ITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI--Y 121 Query: 139 VQVNIGLEPQKSGIAPQEVIPFVSQCKNNYGLDIIGLMAIPPVDENPGPYFALLAKLAK- 197 ++VN G+ + G P V+ Q + + + LM+ E+P +A++ + Sbjct: 122 LKVNSGM--NRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQA 179 Query: 198 QAGLP-KLSMGMSNDFKTALQFGSNVLRIGSALFGKRPV 235 GL + S+ S + + +R G L+G P Sbjct: 180 AEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPS 218
>PERTACTIN#Pertactin signature. Length = 922 Score = 37.0 bits (85), Expect = 1e-04 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 37 QGRLMEGGKYRKYPGLSDSTHNRDVTITKRPNRPRVKKKPAPPKRSRPAHPPQPTPLPQP 96 + ++ G YR Y ++ + K P P+ +P P +P PPQP PQP Sbjct: 539 KDGKVDIGTYR-YRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQP 597 Query: 97 TPLPQP---AQPPQPALSKEYS 115 PQ A PQP +E S Sbjct: 598 PQPPQRQPEAPAPQPPAGRELS 619
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 6e-04 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 54 LEKCAQSPSPTPPPQPAP-PPQPAPPPQPALPEEYSEILQ 92 LE A P PAP PP+P PPP+P + +E E +Q Sbjct: 99 LESVAGIVMGAPAGAPAPKPPRPEPPPRPVVEKECWETIQ 138 Score = 29.7 bits (66), Expect = 0.015 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 11/40 (27%) Query: 58 AQSPSPTPPPQPAPPPQPA----------PPPQPALPEEY 87 A +P+P PP +P PPP+P P P+ A+P + Sbjct: 111 AGAPAPKPP-RPEPPPRPVVEKECWETIQPVPEHAVPPSF 149
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 186 bits (475), Expect = 1e-61 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 10/226 (4%) Query: 9 VKAEQLSSYYEESRGLERDLINEFIRSRRTAWRVASAVGLFGLFGMICGVVGFSQPAPT- 67 + ++L +Y+EE+ ERD + RS++ AW VA G V P T Sbjct: 5 IPKDELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALAT--AGVVAVAALTPLKTV 62 Query: 68 -PLVLRVDNTTGAVDVISIMREHEE-SYGEVVDRYWLNQYVLNRETYDYDTIQLNYGTTA 125 P V+ VD TG + + + +Y E V +Y+L YV RE + + + Sbjct: 63 EPYVITVDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVM 122 Query: 126 LLSAAAVQQEYYKIYDGENAR--DKVLSNRARITVKVRSIQPNGLGQATVRFTTQQLDSS 183 ++SA Q + + Y +N + +L+NR + V+++ + G A V FT + + S Sbjct: 123 VMSARPEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGS 182 Query: 184 GAANGPKQHQIATIGYTYVGAPMKSSDRLLNPLGFQVTSYRSDPEI 229 K +ATI Y G P K DR NPLG+QV SYR+D E+ Sbjct: 183 N---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYRADVEV 225
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.021 Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 168 QDIAPINAWDNGRITYFKFPANMDMPSIYVVDAEGNESL 206 + I P +D+G TYF F P+I+VV +G S+ Sbjct: 412 KHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSM 450 Score = 27.8 bits (61), Expect = 0.048 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 47 VQIETVLGVATHIILEEGE--QYITHAFGDSEAYAFAHKGRHIFIKPKAELANTNLIVVT 104 + I T L T I LE+ E YIT F ++ ++ HIFI+PK+ +N ++ Sbjct: 55 ITIWTSLDNVTVIQLEKDETISYITTGF--NKGWSIVPNSNHIFIQPKSVKSN----LMF 108 Query: 105 DKRSYKFRLQFRNDRAG-STYELAFHYPDSNDEKSEENNRRLAIER 149 +K + F L R+ + T +L PD ++ EE + L E+ Sbjct: 109 EKEAVNFALMTRDYQEFLKTKKLIVDAPDP--KELEEQKKALEKEK 152
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.2 bits (70), Expect = 0.012 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 376 SLRSAVETLPLAKNEEAQEKLLEIIQHDVRRLDRLITDISDASRLDAELARETAEIVDMK 435 ++++ E L LAK EE K E + + +A + E+ RE AE Sbjct: 122 AMQAEDERLRLAKAEEKARKEAEAAEKAFQ----------EAEQRRKEIEREKAETERQL 171 Query: 436 PLLESL 441 L E+ Sbjct: 172 KLAEAE 177
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 1e-25 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 10 TIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDGME 69 TI++ DDD I T L+ AL GY V ++ A+ + + L + D+ MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 70 LLRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRSNA 128 LL R+++ + DLPV+ +++++ + + + GA D++ KPF LI + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 129 RNQPLST 135 R L Sbjct: 125 RPSKLED 131
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 27.1 bits (60), Expect = 0.033 Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 21 PKEKDFRAAFDHFQLATEKVNIQVEDGKAILSGEVPDRETLEKALLVVGNSQG 73 P+E RA D + V+ Q+++ + ILSGE+P R E + + G Sbjct: 547 PQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 149 bits (378), Expect = 3e-42 Identities = 76/388 (19%), Positives = 142/388 (36%), Gaps = 89/388 (22%) Query: 5 IGIDLGTTNSCVAVMDGKNAKVIENSEGARTTPSVVAFTDGGER------LVGQPAKRQA 58 + IDLGT N+ + V G+ + E PSVVA VG AK+ Sbjct: 13 LSIDLGTANTLIYVK-GQGIVLNE--------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 VTNPEGTVFAVKRLIGRRFDDPMVEKDKALVPYKIVKGDNGDAWVEEAGKKYSPSQISAM 118 P A++ PM KD + + + ++ Sbjct: 64 GRTPGNIA-AIR---------PM--KDGVIADFFV------------------TEKMLQH 93 Query: 119 ILQKMKETAESYLGEKVEQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALA 178 ++++ + + ++ VP +R+A +++ + AG + +I EP AAA+ Sbjct: 94 FIKQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIG 150 Query: 179 YGLDKKDGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADE 238 GL + V D+GGGT +++V+ + V + +GG+ FD ++ Y Sbjct: 151 AGLPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRN 205 Query: 239 FKKEQGIDLKNDKLALQRLKEAAEKAKIELSSS----QQTEINLPFITADQSGPKHLTMK 294 + G + AE+ K E+ S+ + EI + + P+ T+ Sbjct: 206 YGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN 252 Query: 295 LTRAKFESLVD------DLVQRTIEPCK----AALKDAGLKAGEIDEVVLVGGMTRMPKI 344 + E+L + V +E C + + + G +VL GG + + Sbjct: 253 -SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNL 303 Query: 345 QQVVQNFFGKDPHKGVNPDEVVAMGAAI 372 +++ G +P VA G Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGGK 331
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 47.9 bits (114), Expect = 2e-08 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 200 INADIFAGAIAGALEAKRLLFLTDVPGVLDKQGK----LLKELTVSEAEKLIKNGT-ISG 254 I+ D+ +A + A + LTDV G G L+E+ V E K + G +G Sbjct: 213 IDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAG 272 Query: 255 GMIPKVETCVKALQNGVEGVVI 276 M PKV ++ ++ G E +I Sbjct: 273 SMGPKVLAAIRFIEWGGERAII 294 Score = 34.4 bits (79), Expect = 5e-04 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 32 ETVVVKYGGHAMGDPALGRAF----------ARDIALLKQSGINPVVVHGGGPQIAEILM 81 + VV+ GG+A+ ++ AR IA + G V+ HG GPQ+ +L+ Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 82 KM 83 M Sbjct: 63 HM 64
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 158 bits (402), Expect = 1e-43 Identities = 90/436 (20%), Positives = 176/436 (40%), Gaps = 82/436 (18%) Query: 20 IRNFSIVAHIDHGKSTLADRLIQMTGGLD---TREMKEQVLDSMDIERERGITIKAQTVR 76 I N ++AH+D GK+TL + L+ +G + + + D+ +ER+RGITI+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 77 LHYKAKNGETYILNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQT-------- 128 + E +N++DTPGH+DF EV RSL+ +G++L++ A GV+AQT Sbjct: 63 FQW-----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 129 -------------------LANVYQAI-DNSHELVVVLNKI-DLPAA------EPERVKE 161 L+ VYQ I + +V+ K+ P E E+ Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 162 QIED-------VIGIDTSQAVEI-------------------SAKTGLGIPDVLEAIVTQ 195 IE + + +A+E+ SAK +GI +++E I + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 196 LPPPRIGDVTNPLKAMLVDSWYDAYLGVIVLVRVIDGILKKGQTIRMMGTGAKYPVERVG 255 + L + Y + +R+ G+L ++R+ E Sbjct: 238 FYSS-THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYT 296 Query: 256 VFTPKMVQVDELGPGEIGFITASIKEVADTRVGDTITEERRPCENALPGFKPAQPVVFCG 315 ++ ++D+ GEI + ++ +GDT +R + P++ Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQRE------RIENPLPLLQTT 349 Query: 316 LFPIDAADFDDLRAAMGKLRLNDASFSFEM-ETSAALGFGFRCGFLGLLHLEIIQERLER 374 + P + L A+ ++ +D + + + + F LG + +E+ L+ Sbjct: 350 VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF----LGKVQMEVTCALLQE 405 Query: 375 EFNLDLIATAPSVVYR 390 ++++++ P+V+Y Sbjct: 406 KYHVEIEIKEPTVIYM 421 Score = 33.7 bits (77), Expect = 0.002 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 416 IEEPWIRATIMTPDNYLGSILELCQERRGIQVGLSYVGTRAMVTYDLPLNEVVFDFYDRL 475 + EP++ I P YL + V +++ ++P + ++ L Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARC-IQEYRSDL 593 Query: 476 KSISKGYASFDYQMTDY 492 + G + ++ Y Sbjct: 594 TFFTNGRSVCLTELKGY 610
>PF06776#Invasion associated locus B Length = 214 Score = 94.6 bits (235), Expect = 2e-26 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 8/153 (5%) Query: 48 SIPRGEPGETRRIIMQFYDWTLICDEKQKLKLKQGICNVTQTVHDQEGNTIFSWSLVSTT 107 S G R + DW + CD K +Q C + Q+V ++ + ++ T Sbjct: 67 SDRADAQGAVRSV---HGDWQIRCDTPPGAKAEQ--CALIQSVVAEDRSNAGLTVIILKT 121 Query: 108 NGQAVMLFR-TLPNS-DISVPIQMFVKGVKKPVLIRYTQCNETVCLAQSPVGPVFTEQIE 165 Q L R P + + + + + +C C+A+ + Q+ Sbjct: 122 ADQKSKLMRVVAPLGVLLPSGLGLKLDN-VDVGRAGFVRCLPNGCVAEVVMDDKLLGQLR 180 Query: 166 QDNKVRISYKLKDGKIFSFTVPFKGLNAALNSL 198 + F + G+ + L Sbjct: 181 TAKTATFIIFETPEEGIGFPLSLNGIGEGYDKL 213
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 41.0 bits (96), Expect = 5e-06 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 135 GAVPVINENDTVATNEIRYGDNDRLAARVATMMGADLLILLSDIDGLYTKSPHCDPTAEF 194 G VPVI E+ + E D D ++A + AD+ ++L+D++G + ++ Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQW 251 Query: 195 IPFVASITHDIEKMADVAASEFSRGGMKTKLDAG-KIANAAGTAMIITS 242 + V ++ K F G M K+ A + G II Sbjct: 252 LREVK--VEELRKYY--EEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH 296
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.039 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 12 QKARSAAAALAVASSEQKNNALEMIALSLEAHSDEILRANCLDLEKATQNNLKAAMVDRL 71 Q AR+ AAA A A ++ +AL L+ +E LR N AT+ + Sbjct: 69 QAARAKAAAEAQAKAKANRDALTQ---RLKDIVNEALRHNASRTPSATELAHANNAAMQA 125 Query: 72 KLDELRLAAMIDSVRQVA 89 + + LRLA + R+ A Sbjct: 126 EDERLRLAKAEEKARKEA 143
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 38.6 bits (90), Expect = 4e-06 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 11 GLFGGSFNPPHAGHLLVAKIAIRRLQLDQLWWMVSPGNPLKDCTQLLSLEERMRLSFKLI 70 ++ GSF+P GHL + + R DQ++ V NP K + S++ER+ K I Sbjct: 3 AIYPGSFDPITFGHLDIIERGCR--LFDQVYVAVL-RNPNK--QPMFSVQERLEQIAKAI 57 Query: 71 DH-PKIRLTGFE 81 H P ++ FE Sbjct: 58 AHLPNAQVDSFE 69
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.009 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 7/218 (3%) Query: 38 EDTIRSTEVHKELGEIRQNISLSRERVVFLTRQVENLKKDQRVLSDALIKAAQEERKIAD 97 + + K L + ++ + + N L Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 98 DIAKREEKLEKMIEKRVQVYQSLKSRRTEFAEVLAILERMGLNPPPALMIQPEDVLASMR 157 ++ K E ++L++ + A LE D+ AS Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 158 SSVLLGTIIPQMQEKTR-------DLTEKLRELTNLSNSITTEYTTLKTKLQSQAEQRKR 210 + L +++E+ + L L + E+ L+ + + R+ Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 383 Query: 211 LELLLDKKNKLQKKSEKELTEQQQKNIALAKKAQSLEE 248 L LD + +K+ EK L E K AL K + LEE Sbjct: 384 LRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE 421
>PF06776#Invasion associated locus B Length = 214 Score = 123 bits (311), Expect = 8e-38 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 10/170 (5%) Query: 17 SSVAFATNSKPPAPKEASATLPNGASSLTETYGLWTINCGLQEG--KKVCFMHRQEVNEQ 74 + + A + + ++ +G W I C G + C + Q V + Sbjct: 49 GARLMLAGAMAIALSFGWSDRADAQGAVRSVHGDWQIRCDTPPGAKAEQCAL-IQSVVAE 107 Query: 75 GRVVVAMALILNAEGVVSGNL---TVPFGILVSKPVRLQVDEGKAVIETGIRTCVPAGCM 131 R + +I+ L P G+L+ + L++D V G C+P GC+ Sbjct: 108 DRSNAGLTVIILKTADQKSKLMRVVAPLGVLLPSGLGLKLDNVD-VGRAGFVRCLPNGCV 166 Query: 132 VPVAFDKTHVAALRAGKQLKLAMTIAAAGEPALNDLFVQLDGFSSALNRL 181 V D + LR K + E + L+G ++L Sbjct: 167 AEVVMDDKLLGQLRTAKTATFII-FETPEEG--IGFPLSLNGIGEGYDKL 213
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.038 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 12/52 (23%) Query: 125 RPSDALPLKSTLTEQAILQNSQWPEMSGRRYDGSPNRIRESVLNVLEAYDWP 176 R D L +QA + R + L +++A+ WP Sbjct: 313 RAEDIPDLVRHFVQQA------------EKEGLDVKRFDQEALELMKAHPWP 352
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.046 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 555 VLSEQSAAYMNQMMVGVTTRGSGKRAALPM-TLVAGKTGTS 594 LS +S + Q MV G R+ LP +A KTG Sbjct: 194 RLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAG 234
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 2 RILIVEDDRNLHHQLAEAVRQAGYVYDSAFDGEEAYFLGSTESYDAVILDIGLPYIDGVR 61 IL+ +DD + L +A+ +AGY + + + D V+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARL-RALIRRTT 120 ++ + ++ +PVL+++A++ + + + GA DY+ KPF L E++ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHA 123 + Sbjct: 125 RPS 127
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 32.5 bits (74), Expect = 0.001 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 139 QEAVNTYLDALRLNGETAPRLVGYGLALVGY---EGG-------VITQEAQNAFQKAADL 188 ++A+ LDAL +N + + VG+ GG +IT + A +L Sbjct: 60 KDAIKLVLDAL-VNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIEL 118 Query: 189 APTDFYPRLLLADAFHQAGKTAQAVQ-FLQSFLDTMPE 225 AP + A Q V F +F TMP+ Sbjct: 119 APLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPD 156
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 61.6 bits (149), Expect = 2e-12 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 34/176 (19%) Query: 127 GSGFFISSDGYIVTNDHVISDGTSYTVVLD------------DGTELNAKLIGKDPKTDL 174 SG + D ++TN HV+ L +G ++ + DL Sbjct: 104 ASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 175 AVLKVNDTRK-------FSYVDFGDDSKLRVGDWVVAIGNPFGLGGTVTAGIVSARGRDI 227 A++K + + ++++ +V + G P + I Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK----PVATMWESKGKI 218 Query: 228 GTGVYDDFIQIDAAVNRGNSGGPTFDLNGKVVGVNTAIFSPSGGNVGIAFAIPAGT 283 T + + +Q D + GNSG P F+ +V+G++ G+ Sbjct: 219 -TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAV 264
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 4e-19 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 11/162 (6%) Query: 2 KILVIEDDRETGRYLEKAFLEVGHSIDVAYDGDTGYALATTENYDVMVVDRMLLHRDGLS 61 ILV +DD L +A G+ + + + T + + D++V D ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 IITELRAKGNETPVLILSALGQVNDRVTGLRAGADDYLTKPYAFSELLARVE---VLQRR 118 ++ ++ + PVL++SA + GA DYL KP+ +EL+ + +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 119 KNPKEAETVYCVSNL--------ELDRLAHTVKRGDRNILLQ 152 + K + L E+ R+ + + D +++ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 2e-06 Identities = 29/190 (15%), Positives = 67/190 (35%), Gaps = 35/190 (18%) Query: 290 LIRTFNAILMISRIEASSAIEHLEMMN--MKLILEDAVELYEPFAEESGVL--------L 339 + N I + + + A E L ++ M+ L + A+E V+ + Sbjct: 175 MFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASI 234 Query: 340 QLGDIFDKELKLNRELIAQTIFN-----LIDNAIKYA-SKDREKAKVCLSMEYRDEHLLV 393 Q D E ++N ++ + L++N IK+ ++ + K+ L + + + Sbjct: 235 QFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 394 VVSDNGPGIAEDKREKVTERFVRLEESRTQPGFGIGLSIAKAVMKLHGGE---LLFENAN 450 V + G ++ +E G GL + +++ G + Sbjct: 295 EVENTGSLALKNTKE----------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 451 PGLRVVLLFP 460 + ++L P Sbjct: 339 GKVNAMVLIP 348
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 36.4 bits (84), Expect = 9e-05 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 209 RAIDSSDWLHDEKKTMIGYTLGGGVDFAMTDNVIVRAEYRY-SDFGKKKFVQDKVEMSYK 267 RA S+ T + GGV++A+T + R EY++ ++ G + + + Sbjct: 124 RADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGML 183 Query: 268 TNDFRVGVAYKF 279 + +GV+Y+F Sbjct: 184 S----LGVSYRF 191
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 29.0 bits (65), Expect = 0.031 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 110 AEIFLI----EISKKLAKEQKQRLFSYQKKIHSIENLNQIPPKPLFLIGNEFLDTLPINQ 165 A I L+ EIS K+ K Q + I L I + + EF + + + Sbjct: 21 AAILLVSIGSEISSKVFKYLSQE--EIESLTFEIAKLETITSELKDNVLLEFKELMMAQE 78 Query: 166 YIKVNG 171 +I+ G Sbjct: 79 FIQKGG 84
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 26.8 bits (59), Expect = 0.012 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%) Query: 17 TDAADVAQGVRREAGTAF----RVQAEKIANKLDLVSREEFETFKEMVLKVH 64 TD + V + V+ D+++ E++ F VL V+ Sbjct: 37 TDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVY 88
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.010 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 261 RFKLQLALANTDFDIKPLEQDVNDMQNMLEDYLAFA 296 +FK +L L N DI +++++ + Q+ LAF+ Sbjct: 213 KFKEKLELNNKSIDINFIKENLTEFQHAFS--LAFS 246
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 2e-26 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 11 DAPHLLVIDDDTRIRNLLLQFLIKNGFRVSVSANANEARKLLASLDFDLLIVDVMMPGEN 70 +LV DDD IR +L Q L + G+ V +++NA + +A+ D DL++ DV+MP EN Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 71 GISLTYSLRQT-KDVPILMLTALSETDNRIRGLEAGADDYLAKPFDPRELLLRINAILRR 129 L +++ D+P+L+++A + I+ E GA DYL KPFD EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 2e-04 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 33/158 (20%) Query: 558 IIRQVGDIGRMVDEFSSFARM--PKPQMHVLDIRELLR--EACFLIEVTRH------DIQ 607 I+ M+ S R + + + L ++ + + + Q Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245 Query: 608 FEQDLGSLPLMGAFDNRLIVQAFCNVIKNASESIDSVMREESIHGHILVRSYRQEEWVVV 667 + + + ++VQ ++N I + + G IL++ + V + Sbjct: 246 INPAIMDVQVP-----PMLVQTL---VENG---IKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 668 DVVDNGKGLPKEQRQKLLEPYITTREKGTGLGLAIVRK 705 +V + G K ++ TG GL VR+ Sbjct: 295 EVENTGSLALKNTKE------------STGTGLQNVRE 320
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 407 bits (1047), Expect = e-141 Identities = 158/478 (33%), Positives = 251/478 (52%), Gaps = 37/478 (7%) Query: 5 ILIVDDEADIRELVAGILDDEGYETRVACNSDEALAQISERIPKLIFLDIWLQGSRLDGL 64 IL+ DD+A IR ++ L GY+ R+ N+ I+ L+ D+ + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--ENAF 63 Query: 65 ALLDEIKTQYPALPVVMISGHGNIETAVSAIKRGAYDFIEKPFKADRLVLVAERTLENSN 124 LL IK P LPV+++S TA+ A ++GAYD++ KPF L+ + R L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL--AE 121 Query: 125 LKRELLELRKRSNETLELLGKSTVIRNLRQIIEKVAPTNSRVMITGPSGAGKETVARTIH 184 KR +L S + + L+G+S ++ + +++ ++ T+ +MITG SG GKE VAR +H Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 185 ALSTRSNGPFVTINAATITPERMEIELFGSE----MEGRERKIGALEEAHGGILYLDEIA 240 R NGPFV IN A I + +E ELFG E + R G E+A GG L+LDEI Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 241 DMPRETQGKILRVLTGQTFERVGGTKRVKVDVRIISSTAQNLENLISDGRFREDLFHRLS 300 DMP + Q ++LRVL + VGG ++ DVRI+++T ++L+ I+ G FREDL++RL+ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 301 VVPIAVPPLSARREDIPELVHHFVKTISQQVGIKPREISDDVIAILQTHAWPGNVRQLRN 360 VVP+ +PPL R EDIP+LV HFV+ ++ G+ + + + +++ H WPGNVR+L N Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 361 NIERLLILVRDGDGPITADFLPSEVSDSLPRLQMDS------------------------ 396 + RL L IT + + +E+ +P ++ Sbjct: 361 LVRRLTALYPQD--VITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 397 --DESIMDLPLREARELFEKRYLVAQIGRLGGNISRTAEFIGMERSALHRKLKALGVS 452 D E ++A + GN + A+ +G+ R+ L +K++ LGVS Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.1 bits (73), Expect = 0.004 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 1 MRVIICG-AGQVGYGIAERLAAENHDVTVID 30 M+ ++ G AG +G+ +++RL H V ID Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 29.9 bits (67), Expect = 0.009 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 75 TIVQFSDFFRVMLMKYQQGVWLDTDVYLVKQF 106 FSD R+ L+ G+W+D VY+ + Sbjct: 130 LDAWFSDILRLFLLCKYGGLWIDATVYMFDKV 161
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 3e-04 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%) Query: 357 ICLLGPPGVGKTSLARSIAKATGRE---YVRISLGGVRD---EAEIRGHRRTYIGSMPGK 410 + + G G GK +AR++ R +V I++ + E+E+ GH + G+ G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGA 219 Query: 411 IIQSMKKAKKSN--PLFLLDEIDKMGQDFRGDPSSALLEVLDPEQNGTF 457 +S + +++ LF LDEI M D + + LL VL Q G + Sbjct: 220 QTRSTGRFEQAEGGTLF-LDEIGDMPMDAQ----TRLLRVL---QQGEY 260
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 115 bits (289), Expect = 2e-37 Identities = 47/88 (53%), Positives = 60/88 (68%) Query: 2 NKSELVSSVAEKAGVSKAQAGAVVDAFMASVTEALASGGDVRLPGFGSFEVSHRAATKGR 61 NK +L++ VAE ++K + A VDA ++V+ LA G V+L GFG+FEV RAA KGR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPSTGAEIDIPARSVPKFSAGKSLKEAV 89 NP TG EI I A VP F AGK+LK+AV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-20 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 729 ATVLLVEDEDAVRMGGVRALQMRGYTVLEAASGVEALSVLEEKKGAVDIIVSDVVMPEMD 788 AT+L+ +D+ A+R +AL GY V ++ + G D++V+DVVMP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDEN 61 Query: 789 GPTLLKEVRKKYPDIKFLFVSGYAKDAFAKNLPQDAVFGFLSKPFTLKQLALTVKETLS 847 LL ++K PD+ L +S A + + +L KPF L +L + L+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 27.1 bits (60), Expect = 0.037 Identities = 11/43 (25%), Positives = 18/43 (41%) Query: 65 DRTRRLVLVRCDNKEHLLLIGGLTDVVVESDITNISKIQKREI 107 DR+ + VL D +E + + V E N+SK + Sbjct: 255 DRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASML 297
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 26.7 bits (58), Expect = 0.041 Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 65 ETDRTIELRARDRQRKLISKIDAALERIDNG 95 E R IEL+ RD ++KL + + A L++ D Sbjct: 73 EKRREIELQFRDAEKKLEASVQAELDKADAA 103
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 78.9 bits (194), Expect = 4e-18 Identities = 43/263 (16%), Positives = 88/263 (33%), Gaps = 36/263 (13%) Query: 37 AETSKGLLSIPDLASELLETVVNISTAQTVEGTEQDENTSIPVIPKDSLLEEYFSDFFTP 96 A +SK + + P + I ++ EQ E+ ++ + D ++ Sbjct: 29 ALSSKAMDNHPQQTQSSKQQTPKIQKGGNLKPLEQREHANVILPNNDRHQITDTTNGHYA 88 Query: 97 KDGQKDSQFQKVRSLGSGFVIDAQKGIIVTNYHVIVDADDIEVNFT------------DG 144 + + SG V+ K ++TN HV+ +G Sbjct: 89 PVTYIQVEAPTGTFIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG 146 Query: 145 TKLKAKLLGKDSKTDLALLQVDAG------NKKLKAVRFGDSEKARIGDWVMAIGNPYGF 198 ++ + DLA+++ + +K ++ + ++ + G P Sbjct: 147 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD- 205 Query: 199 GGSVTVGIISARNRDLNAGPYDNFIQTDAAINRGNSGGPLFDRNGEVIGINTAIVSPSGG 258 T+ + L +Q D + GNSG P+F+ EVIGI+ Sbjct: 206 KPVATMWESKGKITYLK----GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG------- 254 Query: 259 SIGIGFAIPSDMALSVINQLRDF 281 G+ A+ + +R+F Sbjct: 255 --GVPNEFNG--AVFINENVRNF 273
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.030 Identities = 13/36 (36%), Positives = 16/36 (44%) Query: 7 NGGGPWSGDKNKNSGDKKTSAKNFFGSGGSNGGNNG 42 + G WS + N G + GSG NGG NG Sbjct: 34 SDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 39/283 (13%) Query: 70 LMRPIGGWLFGFIADRYGRKRSLLISVFMMCGGSFLIALLPTYETIGTTAAVLLVLLRMI 129 LM+ + G ++DR+GR+ LL+S+ ++A P +L + R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 130 QGLSVGGEYGTTATYMSEVALKKRR----GFFSSFQYATLIGGQLLASLVMFILALYLTE 185 G++ G Y++++ R GF S+ ++ G +L L Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL----------- 153 Query: 186 DQLKAWGWRIPFVI----GGCGAIVAIYLRRSLH--ETTTEESRSQKHTGSLKELLRNHG 239 + + PF G + +L H E + S + Sbjct: 154 --MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211 Query: 240 KAFLLVIGFTAGGSLIFYTSTTYMQKYLITTSKFDKHTANTIMTAALFVFMLLQP-IFGS 298 A L+ + F L+ + +D T + A + L Q I G Sbjct: 212 VAALMAVFFIM--QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 299 LADKIGTKASLLIWSTLSIIFIIPGLRIIGSTHDSWVALLIVI 341 +A ++G + +L+ L +I G ++ W+A I++ Sbjct: 270 VAARLGERRALM----LGMIADGTGYILLAFATRGWMAFPIMV 308
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 46/291 (15%), Positives = 100/291 (34%), Gaps = 28/291 (9%) Query: 70 LMRPIGAWLFGFIADRYGRKRSMLISVFMMCGGSFLIAILPTYKTLGITAAFLLLLVRMF 129 LM+ A + G ++DR+GR+ +L+S+ ++A P ++L + R+ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--------WVLYIGRIV 105 Query: 130 QGLSVGGEYGTAATYMSEVAPKNRRGLFASFQYATTISGQLLASFIIFILAIYLNENQLK 189 G++ G A Y++++ + R F A G + + ++ + Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF------- 157 Query: 190 AWGWRIPFVIGG-FGAIVSIYLRSLLHETTTLKSRSEQHAG-----SLRELFRNHKKAFF 243 PF + + LL E+ + R + S R A Sbjct: 158 --SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 244 LVVGFTAGGSLTFYTYTTYMQKYLITTTGFDKQTATTIMTAALFIFVLFQPLL-GSLADK 302 + V F L + +D T + A + L Q ++ G +A + Sbjct: 216 MAVFFIM--QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273 Query: 303 IGARASLIIWSVLSIICTIPVLKMIGNAQNAWTALFIIIGILCIMSFYTSI 353 +G R ++ +++ +L A+ + ++ M ++ Sbjct: 274 LGER-RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.0 bits (96), Expect = 7e-06 Identities = 51/338 (15%), Positives = 106/338 (31%), Gaps = 45/338 (13%) Query: 70 LMRPIGAWFLGFVADRYGRKRSMLVSIFMMCGGSFFIAILPTYETLGVTAAILLLLIRMM 129 LM+ A LG ++DR+GR+ +LVS+ +A P +L + R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 130 QGLSAGGEYGTAATYMSEVALKKHRGFFASFQSGTLISGQLLASFIIFILASYLSEDQLK 189 G++ G A Y++++ R F S G + + ++ + Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF------- 157 Query: 190 AWGWRIPFVIGG-FGALIAIYLRRALHETTTKESRSHKRSGSLKELLTKHTKAVVVIACF 248 PF L + L E SHK + A A Sbjct: 158 --SPHAPFFAAAALNGLNFLTGCFLLPE-------SHKGERRPLRREALNPLASFRWARG 208 Query: 249 ASGGSLTFYTF----------TTYMQKYLITTTGFDKHTATTIMTAVLFIFILFQP-IAG 297 + + F + +D T + A + L Q I G Sbjct: 209 MTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 298 IIADKIGTKTLLIIWSILSIIFTFPGLWIIGNTHSIWVAVCVIIGLLFIMSMYTS-ISGV 356 +A ++G + ++ +++ + L + + ++ M + +S Sbjct: 269 PVAARLGERR-ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQ 327 Query: 357 VKSAM------FPSSIRALGVSISHAIGNALFGGSAEY 388 V +++ +L + + A++ S Sbjct: 328 VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITT 365
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 79.5 bits (196), Expect = 1e-19 Identities = 41/172 (23%), Positives = 84/172 (48%) Query: 10 NRRFFDIKRANPLGAFWQLKQYPMVLWVLLVFFLYWFAESIWLSIWAFIAKECYDWSSFS 69 RR + NPL +F + +V ++ VFF+ + ++W ++ + W + + Sbjct: 188 ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATT 247 Query: 70 IGLSYSVFGIGQFIVVVLILPYFSKRWSDWRITIVGLLFAAVAMLGYTFATKGWMVYMVC 129 IG+S + FGI + +I + R + R ++G++ + FAT+GWM + + Sbjct: 248 IGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 130 SCTMLEYLVHAPIRAIASAQVPTNVQGELQGAMTSVVSLSLIFGSVFYVFLF 181 + ++A+ S QV QG+LQG++ ++ SL+ I G + + ++ Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 102 bits (255), Expect = 2e-29 Identities = 45/98 (45%), Positives = 64/98 (65%) Query: 1 MFAPVIGNLSDRYGRRPILLVSIICFALDNLICAIAWSYSMLFIGRLLSGISGASFATCT 60 APV+G LSDR+GRRP+LLVS+ A+D I A A +L+IGR+++GI+GA+ A Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG 117 Query: 61 AYLADISDEKNRTRNFGLLEVASALGFILGSFIGGFLG 98 AY+ADI+D R R+FG + G + G +GG +G Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG 155 Score = 29.0 bits (65), Expect = 0.003 Identities = 21/93 (22%), Positives = 39/93 (41%) Query: 5 VIGNLSDRYGRRPILLVSIICFALDNLICAIAWSYSMLFIGRLLSGISGASFATCTAYLA 64 + G ++ R G R L++ +I ++ A A M F +L G A L+ Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Query: 65 DISDEKNRTRNFGLLEVASALGFILGSFIGGFL 97 DE+ + + G L ++L I+G + + Sbjct: 326 RQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 4e-06 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 16 RGLILVFITLLLDILGIAIICPVLPEYFSHLTGKDVSTSFVERGKLLAAYSVM 68 R LI++ T+ LD +GI +I PVLP L + T+ G LLA Y++M Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTA--HYGILLALYALM 55
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 34.1 bits (78), Expect = 0.001 Identities = 11/66 (16%), Positives = 23/66 (34%) Query: 261 VSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDVNWLGDESLDNFPSQGIEVAVKVR 320 VV+ + N ++ G +++ + V+ GD S+ P A V+ Sbjct: 150 NDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAADVVK 209 Query: 321 STRPPH 326 + Sbjct: 210 LVTELN 215
>PF03309#Bvg accessory factor Length = 271 Score = 26.3 bits (58), Expect = 0.042 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 3/74 (4%) Query: 35 MVLELETQISHEERKSGNNNVHHFAYSAFARAARQRRDNLLNSIRDLQLQKTNAEIALHE 94 +V L +I + +V A A + + R L L + E Sbjct: 201 LVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDLRTVEHYDRHLTLD---GLRLVFE 257 Query: 95 ANKELQHAQLLEAR 108 N+ Q +L AR Sbjct: 258 RNRANQRGKLKPAR 271
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-21 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGYD 61 +L+ +DD A+ + L A ++V IT D D+++ D+ +PD + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKTLRLAKIKTPVLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARI-HAVVRRSK 120 +L ++ A+ PVL++S N ++ GA DY+ KPF ELI I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 54.3 bits (130), Expect = 4e-09 Identities = 55/237 (23%), Positives = 88/237 (37%), Gaps = 13/237 (5%) Query: 1262 AIEGQNTSTHLGFVGTYGQLSFTPKNIADAGKSTLDKWALTAYGSIQHSSGFYIDTLLSY 1321 A+ HLG + Y + + G D + Y + SGFY+D L Sbjct: 682 AVAVAGGRWHLGGLAGY---TRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRA 738 Query: 1322 GILKG--HIANALIGKTAKLNNAKMFSISTTVGKEFATGVEGLTFEPQAQVAYQHLMFNT 1379 L+ +A + S G+ F T +G EPQA++A Sbjct: 739 SRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRF-THADGWFLEPQAELAVFRAGGGA 797 Query: 1380 IEDADNFTIDMKNPSQWLIRVGGRLTKTISTENNRPMSFYGKVNLIKTFGDDGSIH---I 1436 A+ + + S L R+G + K I R + Y K ++++ F G++H I Sbjct: 798 YRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGI 857 Query: 1437 GRDFELDPMGPAIEGGVGINAQLSHNFSLHGDVSYQQKLQKTGISGASFSGGIRYQF 1493 EL G E G+G+ A L SL+ Y + + +F G RY + Sbjct: 858 AHRTELR--GTRAELGLGMAAALGRGHSLYASYEYSKGPKLA--MPWTFHAGYRYSW 910
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 44.7 bits (105), Expect = 2e-06 Identities = 54/229 (23%), Positives = 84/229 (36%), Gaps = 19/229 (8%) Query: 604 GLLG-TYGKLAFTPKGMEGADKSTLDKWSLTAYSGLRHNNGTYVHALFSYGMLKG--NIT 660 GL G T G FT G G S + Y+ ++G Y+ A L+ + Sbjct: 694 GLAGYTRGDRGFTGDG-GGHTDSV----HVGGYATYIADSGFYLDATLRASRLENDFKVA 748 Query: 661 TALIGKTAELTSADTFSASATIGQKFETSTKGLVFEPQAQVIYQRLMIDTFSDVDGFDVN 720 + AS G++F T G EPQA++ R + +G V Sbjct: 749 GSDGYAVKGKYRTHGVGASLEAGRRF-THADGWFLEPQAELAVFRAGGGAYRAANGLRVR 807 Query: 721 MGNPHQWLVRIG---GRLMQTTVPTENSSIFSFYGKLNIVKAFSNNATIQIGESFHLDAM 777 L R+G G+ ++ Y K ++++ F T+ H + Sbjct: 808 DEGGSSVLGRLGLEVGKRIELA----GGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTEL 863 Query: 778 -GASLEGGLGVNAQLSQNIALHADVHYQQKLQKTGISGTSFSGGIRYQF 825 G E GLG+ A L + +L+A Y K K + T F G RY + Sbjct: 864 RGTRAELGLGMAAALGRGHSLYASYEY-SKGPKLAMPWT-FHAGYRYSW 910
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 54.7 bits (131), Expect = 1e-09 Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 9/203 (4%) Query: 586 GLLG-TYGKLSFTPKDMDGSDKSTLDKWSLTTYGNLHHDNGLYINALFSYGIFNGHITTA 644 GL G T G F D G S + Y D+G Y++A A Sbjct: 694 GLAGYTRGDRGF-TGDGGGHTDSV----HVGGYATYIADSGFYLDATLRASRLENDFKVA 748 Query: 645 LIDNTTELKDTDTLNISATV-GQKLATGVEGLAFEPQAQLIYQHIAFGTLSDVDGFHVNI 703 D T + A++ + T +G EPQA+L G +G V Sbjct: 749 GSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRD 808 Query: 704 KPSHQWLVRIGGRLTKTMLPIENDRVLSFYGKLNIIKAFSEKNTIDIVESFH-LDSMGSS 762 + L R+G + K + + R + Y K ++++ F T+ H + G+ Sbjct: 809 EGGSSVLGRLGLEVGKRI-ELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTR 867 Query: 763 LEGGLGINAQLSKNIALHADVNY 785 E GLG+ A L + +L+A Y Sbjct: 868 AELGLGMAAALGRGHSLYASYEY 890
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 2e-05 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 8/285 (2%) Query: 48 NTSGVFNPYNDLCDGMGERRPSHPPHSSSEANVPTPSTAPSSSRLTTGNTTSSPSQKPDH 107 N +G ++ YN + + + + + PS ++ + + P P Sbjct: 973 NVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT 1032 Query: 108 AQETEGVQSHTTTTQNTPITQSSPTEMASTTGTAPTTEMEVKSRRRSGVSTSSTDSSSEK 167 ET + Q + + + + TT E KS ++ T+ S + Sbjct: 1033 PSETT-ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 168 TSSNSAISLQSEATQSSPNLQSTSANSESTGSILTRPTTGQSPAPQESELTQSISVKPAP 227 T + AT +T + + + + + + P Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 228 VQSASTQEVSEKSKPTKPVSEKTTTKLLSTPKESETRQRILLRPEADTQKVSKNSEPQKP 287 + + + K T+ + P T V +N E P Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST-------TVNTGNSVVENPENTTP 1204 Query: 288 ESTRPTVEQSSTSNVSELSAISVRPAAGKLTSQETSESLKPAPVQ 332 +T+PTV S++ SVR + TS + + Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 32.7 bits (74), Expect = 0.011 Identities = 61/329 (18%), Positives = 110/329 (33%), Gaps = 41/329 (12%) Query: 418 TGLANIEGTINLKDSSVHVTGNYEANGIIFRNNPYRAPQKRYTRNAERNTNAVKKQEIAG 477 TG N+ G + ++ ++ ++G + R+ + K+ AE N V+ I Sbjct: 683 TGGTNLNGDLTVEKGTLFLSGRPTPHA---RDIAGISSTKKDPHFAENNEVVVEDDWINR 739 Query: 478 KVNLENTNLFVDHGVGINLYGRNTNGVVSLKNSKIHADVLLKNIKNENESTNTLTLVTDH 537 N+ N + + I +++ N + T V Sbjct: 740 NFKATTMNV-----------TGNASLYSGRNVANITSNITASNKAQVHIGYKTGDTVCVR 788 Query: 538 SSLEGQVKTSKDNRTIFDLKEETKWLLKPNKNAVNNDR-VSDDDNILDDYRQFGLDEESF 596 S G V + D + L L+ N N + V N+ + G + Sbjct: 789 SDYTGYVTCTTDKLSDKALNSFNPTNLRGNVNLTESANFVLGKANLFGTIQSRGNSQVRL 848 Query: 597 SNLSVLHLTDSAIVFDKPVEGLYQTLLIGPNLSQGNKTAPTAAVYSATGVAEIYVNTQWD 656 + S HLT ++ V + + L N S T V S +G Y T Sbjct: 849 TENSHWHLTGNSDVHQLDLANGHIHLNSADN-SNNVTKYNTLTVNSLSGNGSFYYLTD-- 905 Query: 657 KHSPITEQKTDRVVINGDVLGSTVVHITLQETDKKMTDNSAVWGEHMASLPLGTHGISII 716 ++ ++ D+VV+ G + TLQ DK N + +++ Sbjct: 906 ----LSNKQGDKVVVTKSATG----NFTLQVADKTGEPN--------------HNELTLF 943 Query: 717 QVS-GQANENSFTLAGNYMTIGGQPYKYV 744 S Q + + +L GN + +G YK Sbjct: 944 DASKAQRDHLNVSLVGNTVDLGAWKYKLR 972
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 117 bits (294), Expect = 2e-31 Identities = 60/375 (16%), Positives = 115/375 (30%), Gaps = 81/375 (21%) Query: 55 VQGDIAAIAPKLNGYIEKIAIKANQIVKKDDILFYLDNGD-------------------- 94 G I P N +++I +K + V+K D+L L Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 95 -YQIALDQTE-------------------------------ARLNTQKKTLLRIDAQITA 122 YQI E + +T + + + + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 123 AHSSLDDAKAQKAAASAIATNAQLTLKRVTELKENRYAPQSDVDDAKSAYEQAIANVNRA 182 + A+ ++ + L + L + + V + ++ Y +A+ + Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVY 271 Query: 183 DAQIAAARANIQVLEA---------------QRSETESQTKSLELSREKAQRDLNSTIIR 227 +Q+ + I + + +T L L K + +++IR Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331 Query: 228 APFDGIIGNLTAKT-GDFVVNGQRLAALVPI-HALYIEANYKETQLQNIHAGQKAYISVD 285 AP + L T G V + L +VP L + A + + I+ GQ A I V+ Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 286 AF---EKEVFTGTVLSISPATGAVFSLLPPQNATGNFTKIVQRIPVRISIPEEILKTGHI 342 AF G V +I+ G ++ I K + Sbjct: 392 AFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTG--NKNIPL 442 Query: 343 RAGMSVSVEVDTRTK 357 +GM+V+ E+ T + Sbjct: 443 SSGMAVTAEIKTGMR 457
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (253), Expect = 4e-25 Identities = 79/421 (18%), Positives = 155/421 (36%), Gaps = 17/421 (4%) Query: 11 SQERIEIRNIVIFIVMAFGMFMAILDIQIVASSLAEVQAGLAASSEEISWVQTSYLIAEV 70 S + +R+ I I + F ++L+ ++ SL ++ +WV T++++ Sbjct: 4 SYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFS 63 Query: 71 IMLPLSGFLGRLLSTRVFFTISAVGFTITSVLCATATSIGEMIIY-RALQGFIGGGIIPS 129 I + G L L + + SV+ S ++I R +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 130 VFVASYVLFPPSKRPVVTPIVGLVATLAPTIGPTVGGYLCHLLSWHWLFLINVPFGIIIS 189 V V P R ++G + + +GP +GG + H + HW +L+ +P II+ Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIIT 181 Query: 190 ILAWKLIDFDKANPSLMAKFDWLGLISMAVFLGTLEYVLEEGARHDWLNDRLIRDLFIIM 249 + L+ K + FD G+I M+V + + I+ Sbjct: 182 VPF--LMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTS---YSIS-------FLIVS 229 Query: 250 ILSAALFFWRAFTAKEPIVDLTTFSNFNFSAASIFSFSLGIGLYGLTYLYPVYLGQIRHY 309 +LS +F +P VD N F + + + G + P + + Sbjct: 230 VLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQL 289 Query: 310 DALMIGETLFLSGFV-MLLTAPLAGYLSARMDARLMMAIGLLGFAIGTWMASSITDNWDF 368 IG + G + +++ + G L R ++ IG+ ++ ++ +S Sbjct: 290 STAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTS 348 Query: 369 WQLFWPQVFRGASVMLCMVPVNNIALGTLPPERMQNASGLFNLTRNLGGAVGLAIISTLM 428 W + VF + ++ I +L + L N T L G+AI+ L+ Sbjct: 349 WFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408 Query: 429 T 429 + Sbjct: 409 S 409
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.003 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 95 LAVAAECAGMGIGSILVRHAIETAKKLGYGAILL------VGDFEFYQRFGF 140 +AVA + G+G+ L+ AIE AK+ + ++L + FY + F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 40.5 bits (95), Expect = 6e-06 Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 6/110 (5%) Query: 22 VDLDVVRDNYLNFKKALPQSRIFYAIKANP-APEILRLLSSLGSSFDAASVAEIEMAL-- 78 +DL ++ N ++A +R++ +KAN I R+ S++G++ D ++ +E A+ Sbjct: 9 LDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGAT-DGFALLNLEEAITL 67 Query: 79 -KAGAT-PERISFGNTIKKERDIAQAYALGVSLYAVDCIEEVEKIARAAP 126 + G P + G ++ +I + L +++ ++ ++ AP Sbjct: 68 RERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP 117
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 25.9 bits (57), Expect = 0.011 Identities = 8/13 (61%), Positives = 10/13 (76%) Query: 45 YGEWVMICGSMAG 57 G+WV +CG MAG Sbjct: 496 EGKWVGMCGEMAG 508
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 243 bits (621), Expect = 5e-80 Identities = 102/364 (28%), Positives = 165/364 (45%), Gaps = 22/364 (6%) Query: 16 AVATIDVSAIVANYITLAKRVAP-TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQI 74 A++D+ A+ N +++ ++ A +VVKANAYG G +I A+ F + + Sbjct: 5 IQASLDLQALKQN-LSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNL 61 Query: 75 REALHLKSILPSNVMIALLNGLPHLAE-EFVAQSGIVPVLNSWNAIENWQ-KICQKKDKK 132 EA+ L+ I +L G H + E Q + ++S NWQ K Q K Sbjct: 62 EEAITLRER-GWKGPILMLEGFFHAQDLEIYDQHRLTTCVHS-----NWQLKALQNARLK 115 Query: 133 FPAIVQ--IDTHMNRLGLDQKELQKLIKRPTIFENANIKYILSHLANGEDNTHPSNDAQL 190 P + +++ MNRLG + + ++ N ++SH A E S + Sbjct: 116 APLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AM 173 Query: 191 TSFKTILAQLPPCRASFANSGGIFLGSDFYFDLVRPGIALYGSDPSGKHASL----LKPV 246 + L CR S +NS + +FD VRPGI LYG+ PSG+ + L+PV Sbjct: 174 ARIEQAAEGLE-CRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPV 232 Query: 247 LRLEAQVLQNRVVDIGTPVGYGETFITSRPSTLATISIGYADGWLRALSNKGTVYFNGYK 306 + L ++++ + + G VGYG + + ++ GYADG+ R V +G + Sbjct: 233 MTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVR 292 Query: 307 LPMVGRVSMDSIIVDTTDLDQKPQTGDWIELIGPHQTLEKVATDANTLPNEILTSLGSRY 366 VG VSMD + VD T Q G +EL G ++ VA A T+ E++ +L R Sbjct: 293 TMTVGTVSMDMLAVDLTPCPQ-AGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRV 351 Query: 367 RYIY 370 + Sbjct: 352 PVVT 355
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.002 Identities = 17/60 (28%), Positives = 24/60 (40%) Query: 62 LQKEYEAKAEERQRKAAEDLDKRLKARRDKEHAEYVKWKAEFEAKQRAKAEKEAKEKAEQ 121 L +E E K + L+ R + A +A K R +A EAK KAE+ Sbjct: 177 LDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEE 236
>PF05307#Bundlin Length = 193 Score = 28.2 bits (62), Expect = 0.006 Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 42 QKYEKGLNRVSAGRLMQISDILNVPISFFYADIITKQQPPHHHDEVISST 91 +KYEKGL+ + + ++ ++ + + F+Y + + EV+S+T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57
>PF05307#Bundlin Length = 193 Score = 27.8 bits (61), Expect = 0.010 Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 18 QKYEKGLNRVSAGRLMQISDILNVPISFFYADIITKQQPPHHHDEVISST 67 +KYEKGL+ + + ++ ++ + + F+Y + + EV+S+T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57
>PF05307#Bundlin Length = 193 Score = 29.0 bits (64), Expect = 0.006 Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 78 QKYEKGLNRVSAGRLMQISDILNVPISFFYADIITKQQPPHHHDEVISST 127 +KYEKGL+ + + ++ ++ + + F+Y + + EV+S+T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57
>PF05307#Bundlin Length = 193 Score = 27.8 bits (61), Expect = 0.010 Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 42 QKYEKGLNRVSAGRLMQISDILNVSISFFYADIITKQQPPHHHDEVISNT 91 +KYEKGL+ + + ++ ++ + + F+Y + + EV+S T Sbjct: 8 KKYEKGLSLIESAMVLALAATVTAGVMFYYQSASDSNKSQNAISEVMSAT 57