PredictBias

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 29.3 bits (65), Expect = 0.021

		 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

		

		Query: 33  YEEGAENCVLNGDAGSAAFLSEMVGAQSHSGARAMAMESLYEYGSRAGFWRLHRLFTARN 92

		           Y  G E    + +     F  E       +G +      L   G+ A      + ++   

		Sbjct: 737 YLAG-ERYFPSPEDEEIYFRPEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNT 795

		

		Query: 93  VPVTVFGVAQALAANPAAVAAMQAAAREIASHGLRWIDYQHLDEATER 140

		             VT+  + QAL A+P    +      ++    L    +++L E + +

		Sbjct: 796 TFVTIADLVQALGADPG--KSSPMLEGQVRD-WLNENGWEYLRETSGQ 840

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 33.4 bits (76), Expect = 0.002

		 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

		

		Query: 68  IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127

		           +A     ++   L +E VC+ ++      FF  E +F  C+  D S + +    L +   

		Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299

		

		Query: 128 E-------------ELLAHTINTAH 139

		           +              L+ H  NTAH

		Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.9 bits (64), Expect = 0.010

		 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

		

		Query: 88   RPQYRPPRPNGSFYNGSRPADSRPQQPDRSPATGAQPSRPPPRIGAPP 135

		            +PQ  P R N    N        PQ    + A   QP++        P

		Sbjct: 1140 QPQAEPARENDPTVNI-----KEPQSQTNTTADTEQPAKETSSNVEQP 1182

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 90.5 bits (224), Expect = 8e-24

		 Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 5/258 (1%)

		

		Query: 4   GIAGRWALVCAASKGLGLGCARALASEGVNVAIAARGRDALERAADTVRALPGAGE-VRC 62

		           GI G+ A +  A++G+G   AR LAS+G ++A      + LE+   +++A     E    

		Sbjct: 5   GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64

		

		Query: 63  VVADIATPEGRSAALAA-CPQIDILINNAGGPPPGDFRQWERADWLRALDANMLAPIALI 121

		            V D A  +  +A +      IDIL+N AG   PG        +W      N        

		Sbjct: 65  DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124

		

		Query: 122 RATVDGMRARRFGRIINITSSAVKAPIDILGLSNGARAGLTGFVAGLARSTVADNVTINN 181

		           R+    M  RR G I+ + S+    P   +     ++A    F   L       N+  N 

		Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184

		

		Query: 182 LLPGQFATDRLRGNFTA-IAQQQRSTAEEVAERKRAGIPAARFGEPDEFGAACAFLCSAQ 240

		           + PG   TD     +      +Q        E  + GIP  +  +P +   A  FL S Q

		Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGS--LETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242

		

		Query: 241 AGYITGQNLLIDGGSYPG 258

		           AG+IT  NL +DGG+  G

		Sbjct: 243 AGHITMHNLCVDGGATLG 260

		

		

		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

		          family signature.

		          Length = 86

		

		 Score = 60.2 bits (146), Expect = 7e-16

		 Identities = 24/78 (30%), Positives = 43/78 (55%)

		

		Query: 4  DDLVRFTSEALLLCLKVSLPVVSVAALTGLLIAFVQAVMSLQDASISFALKLVVVVAAIA 63

		          DDLV   ++AL L L +S     VA + GLL+   Q V  LQ+ ++ F +KL+ V   + 

		Sbjct: 2  DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61

		

		Query: 64 VTAPWGASAIMQFGQALM 81

		          + + W    ++ +G+ ++

		Sbjct: 62 LLSGWYGEVLLSYGRQVI 79

		

		

		>TYPE3IMPPROT#Type III secretion system inner membrane P protein

		           family signature.

		          Length = 224

		

		 Score =  245 bits (626), Expect = 7e-85

		 Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 8/219 (3%)

		

		Query: 3   MPDVGSLLLVVIMLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVS 62

		           M +  SL+ ++    LLPF     T + K  +V  ++RNA+G+QQ+P NM LNGVALL+S

		Sbjct: 1   MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60

		

		Query: 63  CFVMAPVGMEAFKA-AQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQ 121

		            FVM P+  +A+          +D S +   +D   + +R +L+K++      FF  +  

		Sbjct: 61  MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120

		

		Query: 122 QIWPKDKAAT-------LKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANAL 174

		           +    ++  T       ++   +  L PA+ LSE+  AF+IGF LYL F+V+DLVV++ L

		Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180

		

		Query: 175 MAMGLSQVTPTNVAIPFKLLLFVAMDGWSILIHGLVLSY 213

		           +A+G+  ++P  ++ P KL+LFVA+DGW++L  GL+L Y

		Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219

		

		

		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

		           family signature.

		          Length = 303

		

		 Score = 65.4 bits (159), Expect = 3e-14

		 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 17/178 (9%)

		

		Query: 144 PAQLPAWLAPLRVNTRMRIGGRTASAALLQSLRPGDVLLHCTAAAAVTRGEVLWG----I 199

		           PA        LR   R  IG      +LL  +  GDVLL  T+ A V       G    +

		Sbjct: 138 PAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRV 197

		

		Query: 200 AGGAVLRAPVRLNMQQMILEASPTMQHDTFEPEVAPSTSNVAELELPVQLEVDQLALSLS 259

		            GG ++     L++Q +  E + T        E A +   + +L + ++  + +  ++L+

		Sbjct: 198 EGGIIVET---LDIQHIEEENNTT--------ETAETLPGLNQLPVKLEFVLYRKNVTLA 246

		

		Query: 260 TLSGLQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILS-MSESTHAD 316

		            L  +   Q+L L    +  ++ ++  G  +G G L+ + + LGV+I   +SES + +

		Sbjct: 247 ELEAMGQQQLLSLPTNAEL-NVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESGNGE 303

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score =  332 bits (852), Expect = e-115

		 Identities = 113/343 (32%), Positives = 190/343 (55%), Gaps = 2/343 (0%)

		

		Query: 1   MSEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFVDHMRALTRIG 60

		           MS EKTE+PT KK+RDARK G+V  S +V + A++     ++    DY+ +H   L  I 

		Sbjct: 1   MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60

		

		Query: 61  FDFLENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVSPKF 120

		            +       + A++  + ++ ++   L  P L    +  +     Q G   S + + P  

		Sbjct: 61  AE-QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119

		

		Query: 121 DSLNPANGVKKLFSLRSLINLLKLVIKAVLIGVVLWVGIRALMPMIIGLAYETPLDIAQI 180

		             +NP  G K++FS++SL+  LK ++K VL+ +++W+ I+  +  ++ L       I  +

		Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPL 179

		

		Query: 181 AWRTLSILFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREYKESEGDPEIKGKRK 240

		             + L  L  +  + F+++  AD++ +++ +I++ +MSKDE KREYKE EG PEIK KR+

		Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRR 239

		

		Query: 241 EFAKELVFGDPRERVVKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFA 300

		           +F +E+   + RE V ++ V+V NPTH A+ + Y+  +  LP V  K  D     +R  A

		Sbjct: 240 QFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299

		

		Query: 301 HNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWVD 342

		             +G+PI+   PLARALY    +   IP +  E  A VLRW++

		Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342

		

		

		>FLGMRINGFLIF#Flagellar M-ring protein signature.

		          Length = 559

		

		 Score = 83.9 bits (207), Expect = 1e-20

		 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 11/188 (5%)

		

		Query: 3   ALRYLVVLLLALLLSACSQQ---LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAV 59

		           A    V +++A++L A +     L+S L++ D  A++  L    +   +     G   A+

		Sbjct: 30  AGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPY-RFANGSG---AI 85

		

		Query: 60  NAPSDQVSYSLETLRAHGLPHERHANLG-EMFKKDGLISTPTEERVRFIYGVSQQLSQTL 118

		             P+D+V      L   GLP  +   +G E+  ++    +   E+V +   +  +L++T+

		Sbjct: 86  EVPADKVHELRLRLAQQGLP--KGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTI 143

		

		Query: 119 SNIDGVISADVEIVLPNNDPLATSVKPSSAAVFIKFRVGSDLT-SMVPNIKTMVMHSVEG 177

		             +  V SA V + +P         K  SA+V +    G  L    +  +  +V  +V G

		Sbjct: 144 ETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAG 203

		

		Query: 178 LTYENVSV 185

		           L   NV++

		Sbjct: 204 LPPGNVTL 211

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score = 30.5 bits (68), Expect = 0.004

		 Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 48/245 (19%)

		

		Query: 4   WLRSTPDAIGLDCDVIPREALGSVLALDAATVEVHARCEQALSQAQARAQTLIDEAQQQA 63

		           W   TPD      D+ P +A    + +      +    E +L Q  A+ Q  +   +Q  

		Sbjct: 7   WKTWTPD------DLAPPQA--EFVPIVEPEETIIEEAEPSLEQQLAQLQ--MQAHEQGY 56

		

		Query: 64  EAILHDARQKAERSARLGYAAGLRRQLDEWNESGLRHAFAAETAAHRARERLAEIVARTC 123

		           +A + + RQ+  +    GY  GL + L    E GL  A + +   H   ++L      T 

		Sbjct: 57  QAGIAEGRQQGHKQ---GYQEGLAQGL----EQGLAEAKSQQAPIHARMQQLVSEFQTTL 109

		

		Query: 124 EHI------------------ILGHDPA----ALYARAAQALEGALDEAKALRVSVHPDA 161

		           + +                  ++G  P     AL  +  Q L+     +   ++ VHPD 

		Sbjct: 110 DALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDD 169

		

		Query: 162 LDAARRAFDAAATEAGWTLQVELCGDADLAVGACVCEWDTGVFETDLRDQLRSLRRVIRR 221

		           L        A  +  GW L+    GD  L  G C    D G  +  +  + + L R    

		Sbjct: 170 LQRVDDMLGATLSLHGWRLR----GDPTLHPGGCKVSADEGDLDASVATRWQELCR---- 221

		

		Query: 222 VLAAP 226

		            LAAP

		Sbjct: 222 -LAAP 225

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.1 bits (62), Expect = 0.018

		 Identities = 11/62 (17%), Positives = 23/62 (37%)

		

		Query: 93   AEQAQAAADQSLQSARDELASVQQALSKLQAQAQVYADKAASARRARQAQRDAAEEEDAI 152

		            +E  +  A+ S Q ++    + Q A        +V  +  ++ +   Q    A    +  

		Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093

		

		Query: 153  ET 154

		            ET

		Sbjct: 1094 ET 1095

		

		

		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

		           family signature.

		          Length = 261

		

		 Score =  172 bits (438), Expect = 5e-55

		 Identities = 53/240 (22%), Positives = 109/240 (45%), Gaps = 3/240 (1%)

		

		Query: 8   LLALSSQGVSLLTLLALCGVRVLVMFIVLPATAQDSLPGIARNGVIYVLSSFIAYGQPAD 67

		           L   S Q +S L L     +RVL +    P  ++ S+P   + G+  +++  IA   PA+

		Sbjct: 2   LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61

		

		Query: 68  ALVKIQTVGLVGVVFKEAFIGLLIGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQ 127

		             V + +   + +  ++  IG+ +GF     F    + G +I    G +     +P S  

		Sbjct: 62  -DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120

		

		Query: 128 QSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFHWWPLTQLGPNMGAVAESFVIRQYDS 187

		               ++ ++  LA++ F    G L L+  L ++FH  P+      + + A   + +    

		Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSL 178

		

		Query: 188 MIAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIA 247

		           +    + L+ P++ +L+ ++LA+GL+ R A +L    +  P+   + + L+A L  +   

		Sbjct: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238

		

		

		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

		           family signature.

		          Length = 607

		

		 Score =  334 bits (857), Expect = e-109

		 Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 16/309 (5%)

		

		Query: 302 ASVWPELSKGR---RDESNPIDAGGGAELASDAPVIEADPRTNAILIRDRPERMQSYGTL 358

		           A++   +       +   +       A  AS    +EADP  NAI++RD PERM  Y  L

		Sbjct: 212 ATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPMYQRL 271

		

		Query: 359 IQELDNRPKLLQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGA 418

		           I  LD     +++  +I++I    + +LGVDWR       I+TG+     +   G  S  

		Sbjct: 272 IHALDKPSARIEVALSIVDINADQLTELGVDWR-----VGIRTGNNHQVVIKTTGDQSNI 326

		

		Query: 419 ATDGATTPVGGTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQ 478

		           A++GA     G+L    G    YL+ RV+ LE    A++VS P + T +N +AV+DH + 

		Sbjct: 327 ASNGAL----GSLVDARGL--DYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSET 380

		

		Query: 479 AFVRVSGYASADLYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQLGSNT--VDGIPV 536

		            +V+V+G   A+L  ++ G  LR+ P V+     S++ L++ IEDG    N+  ++GIP 

		Sbjct: 381 YYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPT 440

		

		Query: 537 ITSSEIKTQAFVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQR 596

		           I+ + + T A V  GQSL+I G   D     L+ VP L  IP +G LF+ + +   R  R

		Sbjct: 441 ISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVR 500

		

		Query: 597 LFLLTPHVV 605

		           LF++ P ++

		Sbjct: 501 LFIIEPRII 509

		

		

		

		 Score =  239 bits (612), Expect = 5e-73

		 Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

		

		Query: 15  LAAVLLLSLLPLFSPQADAAQVPWHSRTFKYVADNKDLKEVLRDLSASQSIATWISPEVT 74

		              VL  +LL L S  + A ++ W    + YVA  + L+++L D  A+      +S ++ 

		Sbjct: 9   FKRVLTGTLL-LLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKIN 67

		

		Query: 75  GTLSGKFE-TSPQKFLDDLAATYGFVWYYDGAMLRIWGANESKSATLSLGTASTKSLRDA 133

		             +SG+FE  +PQ FL  +A+ Y  VWYYDG +L I+  +E  S  + L  +    L+ A

		Sbjct: 68  DKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQA 127

		

		Query: 134 LERMRLDDLRFPVRYDEAAHVAVVSGPPGYVDTVSAIARQVEQGARQR----DATEVQVF 189

		           L+R  + + RF  R D +  +  VSGPP Y++ V   A  +EQ  + R     A  +++F

		Sbjct: 128 LQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIF 187

		

		Query: 190 QLHYAQAADHTTRIGGQDVQIPGMASLLRSIY 221

		            L YA A+D T      +V  PG+A++L+ + 

		Sbjct: 188 PLKYASASDRTIHYRDDEVAAPGVATILQRVL 219

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 50.6 bits (121), Expect = 5e-09

		 Identities = 92/380 (24%), Positives = 137/380 (36%), Gaps = 45/380 (11%)

		

		Query: 48  VQPVLPEFARAFQVDAATAS-LPLSLATGALALAIFC--AGAVSENLGRRGLMFASIAIA 104

		           + PVLP   R         +   + LA  AL         GA+S+  GRR ++  S+A A

		Sbjct: 24  IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83

		

		Query: 105 AVLNLIAAFLPHWDALVVIRTLSGFALGGVPAVAMVYLGEELPANK-------MGAATGL 157

		           AV   I A  P    L + R ++G   G   AVA  Y+ +    ++       M A  G 

		Sbjct: 84  AVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGF 142

		

		Query: 158 -YVAGNAFGGMSGRIVMSVLTDHTDWRTALAVLSWFDLLCALAFFWLLPPS----RNFVR 212

		             VAG   GG+ G                    +  + L  L   +LLP S    R  +R

		Sbjct: 143 GMVAGPVLGGLMGGFSP---------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLR 193

		

		Query: 213 RHGINLRFHLSAWAGHLRDRNLPFLFALPFLLM---GVFVCLYNYVGFRLGGPEFGLSQS 269

		           R  +N       WA  +    +  L A+ F++     V   L+       G   F    +

		Sbjct: 194 REALNP-LASFRWARGMT--VVAALMAVFFIMQLVGQVPAALWVI----FGEDRFHWDAT 246

		

		Query: 270 QIGMIFSAYVFGIVSS----SVAGAASDRFGRGPVVTAGIVLCVLGVTLTLAHVLAVVVA 325

		            IG+  +   FGI+ S     + G  + R G    +  G++    G  L        +  

		Sbjct: 247 TIGISLA--AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304

		

		Query: 326 GIVLLTIGFFIAHSAASAWVSRLGGAHRSHAASLYLLAYYAGASTIGALGGWFWQHGGWG 385

		            I++L     I   A  A +SR     R       L A  +  S +G L         + 

		Sbjct: 305 PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI----YA 360

		

		Query: 386 ALVGMWLTLLAIAFAAAYIL 405

		           A +  W     IA AA Y+L

		Sbjct: 361 ASITTWNGWAWIAGAALYLL 380

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 34.0 bits (78), Expect = 5e-04

		 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 37/131 (28%)

		

		Query: 8   ILVTGASGQLGALVVEALL--GHVPAG---------------RIVATARDTASLVEFAKR 50

		            LVTGA+G +G  V + LL  GH   G               R+   A+      +F K 

		Sbjct: 3   YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKI 59

		

		Query: 51  DIAVRQ------ADYADPHSLHTAF-SGVGRVL-----LVSSNAVGQRVPQHRNVIEAAK 98

		           D+A R+      A         +     V   L        SN  G       N++E  +

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTG-----FLNILEGCR 114

		

		Query: 99  RAGVELLAYTS 109

		              ++ L Y S

		Sbjct: 115 HNKIQHLLYAS 125

		

		

		>V8PROTEASE#V8 serine protease family signature.

		          Length = 336

		

		 Score = 82.4 bits (203), Expect = 3e-19

		 Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 40/193 (20%)

		

		Query: 110 LGSGVIIDAQKGYVLTNHHVIENADDVQVTL------------GDGRTVKADFIGSDADT 157

		           + SGV++   K  +LTN HV++        L             +G            + 

		Sbjct: 103 IASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160

		

		Query: 158 DIALIRIKAD--------NLTDIKLADSNALRVGDFVVAIGNPFG---FTQTVTSGIVSA 206

		           D+A+++   +         +    ++++   +V   +   G P      T   + G ++ 

		Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITY 220

		

		Query: 207 VGRSGIRGLGYQNFIQTDASINPGNSGGALVNLQGQLVGINTASFNPQGSMAGNIGLGLA 266

		           +             +Q D S   GNSG  + N + +++GI+      +     N  + + 

		Sbjct: 221 L---------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE----FNGAVFIN 267

		

		Query: 267 --IPSNLARNVVE 277

		             + + L +N+ +

		Sbjct: 268 ENVRNFLKQNIED 280

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 30.4 bits (68), Expect = 0.010

		 Identities = 19/145 (13%), Positives = 41/145 (28%)

		

		Query: 111  QKLVSTKDAAKHKLTSTTDAAKQKLSSTSAAAKKKITDTKANTKRKLEIAKANAKAEAAA 170

		            +K   T D       +   A    + S +    +                     AE + 

		Sbjct: 986  EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045

		

		Query: 171  LSAKTAAKSAARKTAVATVNARTAAKKVAAKSAAAKKSVAKTPAKPVAKKAPAAKQTATK 230

		              +KT  K+    T     N   A +  +   A  + +          +      +    

		Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105

		

		Query: 231  LAAVKKAPLKKAVTKTALKKAAKVT 255

		            +   +KA ++   T+   K  ++V+

		Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVS 1130

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 38.2 bits (89), Expect = 2e-05

		 Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 27/155 (17%)

		

		Query: 1   MHLLITGGTGFIGQALYPALLQAGYQV----------SVLTRDVRRAQRTLPGVTAVET- 49

		           M  L+TG  GFIG  +   LL+AG+QV           V  +  R      PG    +  

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 50  ----------LDGVRADAVINLAGEPLAAGRWTDARKQRFRQSRLGITGHLHAWIAQQPA 99

		                           + V         A R++      +  S   +TG L+     +  

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADS--NLTGFLNILEGCRHN 116

		

		Query: 100 AQRPSVVISGSAVGYYGERGDTALTEAEPAGDDFS 134

		             +  +  S S+V  YG       +  +      S

		Sbjct: 117 KIQHLLYASSSSV--YGLNRKMPFSTDDSVDHPVS 149

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 50.0 bits (119), Expect = 9e-10

		 Identities = 22/134 (16%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

		

		Query: 12  PPSRKPAISREDLIAAALSLIGPHRSLSTLSLREVAREAGIAPNSFYRQFRDMDELAVAL 71

		              ++   +R+ ++  AL L    + +S+ SL E+A+ AG+   + Y  F+D  +L   +

		Sbjct: 4   KTKQEAQETRQHILDVALRLFS-QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62

		

		Query: 72  IDLAGRSLRTIIGQARQRATSTDRSVIRVSVEAFMEQLRADDK---LLHVLLREGAVGSD 128

		            +L+  ++  +  + + +      SV+R  +   +E    +++   L+ ++  +     +

		Sbjct: 63  WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122

		

		Query: 129 AFKLAVERELSYFE 142

		              +   +     E

		Sbjct: 123 MAVVQQAQRNLCLE 136

		

		

		>BCTLIPOCALIN#Bacterial lipocalin signature.

		          Length = 171

		

		 Score =  103 bits (258), Expect = 1e-30

		 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 12/155 (7%)

		

		Query: 5   PELATVPS-LDLNRYLGTWYEIARLPIHFEDADCTDVSAHYTLEDDGSVRVQNRCLTVE- 62

		           PE     S  +LN YLG WYE+ARL   FE    + V+A Y + +DG + V NR  + E 

		Sbjct: 20  PESVKPVSDFELNNYLGKWYEVARLDHSFERG-LSQVTAEYRVRNDGGISVLNRGYSEEK 78

		

		Query: 63  GELEEVIGQARAIDD-THSRLEVTFLPEGLRWIPFTKGHYWVMRID-PDYTAALVGSPDR 120

		           GE +E  G+A  ++  T   L+V+F        PF  G Y V  +D  +Y+ A V  P+ 

		Sbjct: 79  GEWKEAEGKAYFVNGSTDGYLKVSFFG------PFY-GSYVVFELDRENYSYAFVSGPNT 131

		

		Query: 121 KYLWLLARLPQLDENVAQAYLAHAREQGFDLAPLI 155

		           +YLWLL+R P ++  +   ++  ++E+GFD   LI

		Sbjct: 132 EYLWLLSRTPTVERGILDKFIEMSKERGFDTNRLI 166

		

		

		>HELNAPAPROT#Helicobacter neutrophil-activating protein A family

		           signature.

		          Length = 153

		

		 Score = 28.7 bits (64), Expect = 0.006

		 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

		

		Query: 44  EYKESIDEMKHADKLSDRILFLEGLPNF---QALGKLRIGENP-----TEMFRCDLTLER 95

		           E  +   E    D +++R+L + G P     +      I +       +EM +  +   +

		Sbjct: 52  ELYDHAAE--TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYK 109

		

		Query: 96  EAVVVLREAVAYAETVKDYVSRQLLVDILESEEEHIDWLETQL 138

		           +     +  +  AE  +D  +  L V ++E  E+ +  L + L

		Sbjct: 110 QISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 59.5 bits (144), Expect = 3e-11

		 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

		

		Query: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALTRMESIRYDMVFMDCQMPVLDGYA 557

		            IL+ +D+     V  + L+  G++    ++       + +   D+V  D  MP  + + 

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 558 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAVGMDDYLPKPVAREQLDACLQRWL 617

		              R +    +     +P++ M+A        +    G  DYLPKP    +L   + R L

		Sbjct: 65  LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119

		

		Query: 618 PRQTLLPGP 626

		                 P  

		Sbjct: 120 AEPKRRPSK 128

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 65.6 bits (160), Expect = 2e-13

		 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

		

		Query: 113 RVLIVEDDRSQALFAQSVLHGAGMHAQVEMTPASVPQAIQDYHPDLILMDLHMPELDGIR 172

		            +L+ +DD +        L  AG   ++    A++ + I     DL++ D+ MP+ +   

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 173 LTTLIRQQPGQQLLPIVFLTGDPDPERQFEVLDSGADDFLTKPIRPRHLIAAVSN--RIR 230

		           L   I++   +  LP++ ++         +  + GA D+L KP     LI  +       

		Sbjct: 65  LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122

		

		Query: 231 RARQQALQQAGEQI 244

		           + R   L+   +  

		Sbjct: 123 KRRPSKLEDDSQDG 136

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 37.4 bits (86), Expect = 4e-05

		 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

		

		Query: 66  EAALQQAQRSQAQQRRQIEQLQQRQVNLAMSDKISRAANTEVQASLAERDEQIAALRADV 125

		            A  Q  +R     R   +QL+     L   +KIS A+   ++  L    E    L A+ 

		Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEH 367

		

		Query: 126 AFYERLVG-STAQRKGLNA 143

		              E     S A R+ L  

		Sbjct: 368 QKLEEQNKISEASRQSLRR 386

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  112 bits (281), Expect = 5e-32

		 Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 10/253 (3%)

		

		Query: 8   LDGQTALITGASAGIGLAIARELLGFGADLLMVARDADTLAQARDELAEEFPQRELHGLA 67

		           ++G+ A ITGA+ GIG A+AR L   GA +   A D +     +   + +   R      

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIA--AVDYNPEKLEKVVSSLKAEARHAEAFP 63

		

		Query: 68  ADVSDDEERRAILDWVEDHADGLHLLINNAGGNVSRAAIDYTEDEWRGIFETNVFSAFEL 127

		           ADV D      I   +E     + +L+N AG          +++EW   F  N    F  

		Sbjct: 64  ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

		

		Query: 128 SRYAHPLLTQHAASAIINVGSVSGITHVRSGAPYGMTKAALQQMTRNLAVEWAEDGIRVN 187

		           SR     +    + +I+ VGS        S A Y  +KAA    T+ L +E AE  IR N

		Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183

		

		Query: 188 AVAPWYIRTRRTSGPLSDPDYYEQVIERT--------PMRRIGEPEEVAAAVGFLCLPAA 239

		            V+P    T       +D +  EQVI+ +        P++++ +P ++A AV FL    A

		Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243

		

		Query: 240 SYITGECIAVDGG 252

		            +IT   + VDGG

		Sbjct: 244 GHITMHNLCVDGG 256

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 28.1 bits (62), Expect = 0.032

		 Identities = 17/71 (23%), Positives = 21/71 (29%)

		

		Query: 47  KGMQQQKKLMTAPAAVPFAPGGATASPARATPAPQQRVAAPAVASAPVAPTTPVAPPAPA 106

		           K +++ KKL     A   A   A A   +   A Q    A   A       TP A P   

		Sbjct: 417 KELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNK 476

		

		Query: 107 LTSTSTLPPPP 117

		                   P  

		Sbjct: 477 AVPGKGQAPQA 487

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 33.4 bits (76), Expect = 0.002

		 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

		

		Query: 68  IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127

		           +A     ++   L +E VC+ ++      FF  E +F  C+  D S + +    L +   

		Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299

		

		Query: 128 E-------------ELLAHTINTAH 139

		           +              L+ H  NTAH

		Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 33.4 bits (76), Expect = 0.002

		 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

		

		Query: 68  IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127

		           +A     ++   L +E VC+ ++      FF  E +F  C+  D S + +    L +   

		Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299

		

		Query: 128 E-------------ELLAHTINTAH 139

		           +              L+ H  NTAH

		Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324

		

		

		>PF05860#haemagglutination activity domain.

		          Length = 117

		

		 Score = 66.4 bits (162), Expect = 1e-14

		 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 25/134 (18%)

		

		Query: 70  IVGDAAAPGNERPTVLTAPNGVPLVNITTPSAAGVSRNRYSQFDVGREGAIVNNARGQTQ 129

		           I  D   P N   + +T      ++   T + + +  + + +F V   G    N     Q

		Sbjct: 3   ITPDTTLPIN---SNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNPTNIQ 58

		

		Query: 130 TQLGGWVQGNPWLATGGARVILNEVNGP-ASRLNGYVEVAGQRAEVIIANPAGIQVDGGG 188

		                               I++ V G   S ++G +      A + + NP GI      

		Sbjct: 59  -------------------NIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQNA 98

		

		Query: 189 FLNASRVTLTTGTP 202

		            L+     + +   

		Sbjct: 99  RLDIGGSFVGSTAN 112

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 30.8 bits (69), Expect = 0.041

		 Identities = 36/300 (12%), Positives = 71/300 (23%), Gaps = 1/300 (0%)

		

		Query: 480 MQALAGASAAYSAYGAGQAMGSALSAGSAKDAAQGAGLKIAVTVGGSKSQSQTTQQSATT 539

		           ++ L+  +      GA       +        + G           +      +     T

		Sbjct: 134 VKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193

		

		Query: 540 KGSTLQAGGNVNLIATGGGEDSNI-LVRGSDLKAGNNLLLSADHDITLEAAQDSFEQHST 598

		              T   G N   +    G             K   N           E         +T

		Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTT 253

		

		Query: 599 SKSSSAAIGVAVTYGADGFAAGVTVSASGARGKADGQDITQRNSHLSAGNTATLISGNDT 658

		             ++  A   A+     G   G T    G     D +     N  +S       ++    

		Sbjct: 254 KSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVA 313

		

		Query: 659 TLKGAVLSANTVLADIGGDLNIESLQDTSTYTSKDKAVGGSVTFGMGFSASGSYSSNKVN 718

		            +     + +        ++    +    T+  K K     ++     +A    S   VN

		Sbjct: 314 DITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVN 373

		

		Query: 719 GDFASVKEQSGIQAGDGGFDIRVHGNTDLKGAVIASTQAAVDAGTNRLQTGTLTVSDITN 778

		           G   +           G         + +   +     AA  +  N L +    +S +  

		Sbjct: 374 GAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDA 433

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 31.5 bits (71), Expect = 0.005

		 Identities = 11/53 (20%), Positives = 13/53 (24%)

		

		Query: 385 PQSAAVSPGEPAEPVVDAVPPAYAPARKPQRDTAAAPAPAAAPVAAHVAPASA 437

		           PQ+    P    EP  +  P    P   P       P P   P          

		Sbjct: 63  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPK 115

		

		

		

		 Score = 28.4 bits (63), Expect = 0.048

		 Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 6/92 (6%)

		

		Query: 361 LAMGVLLRVSYEADRAERLRSKLSPQSAAVSPGEPAEPVVDAVPPAYAPARKPQRDTAAA 420

		           +  G+L   +      E            V+P +   P     P    P    + +    

		Sbjct: 28  VVAGLL--YTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPP----PEPVVEPEPEPE 81

		

		Query: 421 PAPAAAPVAAHVAPASAILRGTSRMQPRVEPT 452

		           P P     A  V               +    

		Sbjct: 82  PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  149 bits (378), Expect = 1e-43

		 Identities = 81/286 (28%), Positives = 117/286 (40%), Gaps = 29/286 (10%)

		

		Query: 62  DGNGRDDHPAGEGDWNSTSGCSTSNSSWHGTHAAGTAAAVTTTTSVAGTAFNAKVVPVRV 121

		           D   R        D +        + + HGTH AGT AA      V G A  A ++ ++V

		Sbjct: 58  DLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKV 117

		

		Query: 122 LGRCG-GSLSDIADAIIWASGGSVSGVPANANVAEVINMSLGGGSWSSSYQNAINSAVSR 180

		           L + G G    I   I +A               ++I+MSLGG         A+  AV+ 

		Sbjct: 118 LNKQGSGQYDWIIQGIYYA----------IEQKVDIISMSLGGPEDVPELHEAVKKAVAS 167

		

		Query: 181 GTTVVVAACTSAANVSGLL----PANCANVIAVAATTSAGAKASYSNFGAEIDVSAPGSG 236

		              V+ AA               P     VI+V A       + +SN   E+D+ APG  

		Sbjct: 168 QILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGED 227

		

		Query: 237 ILSTLNSGTTTPGTPSYASYNGTSMAVPHVAGVVALMQSVALN----PLTPATVKALLKA 292

		           ILST+  G        YA+++GTSMA PHVAG +AL++ +A       LT   + A L  

		Sbjct: 228 ILSTVPGGK-------YATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIK 280

		

		Query: 293 SARPLLVACTQGGGAGLVNADGAVAAVIASTTLTRNVARTRPSAAL 338

		              PL  +     G GL+         ++    T+ VA    +A+L

		Sbjct: 281 RTIPLGNSPKM-EGNGLLYLTAVEE--LSRIFDTQRVAGILSTASL 323

		

		

		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

		          Length = 732

		

		 Score = 45.1 bits (106), Expect = 5e-07

		 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

		

		Query: 299 PYIVRAHGLVQIEH----TFGILLERIDGISVRSMIGRARRALQQGAITAMEYLGMARQL 354

		           P +   HG+  + +       +L++ +DG      +     + +QG I +  Y G  + +

		Sbjct: 191 PNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFI 250

		

		Query: 355 MADVLVGIACCEDAGIVHQDISHNNVMYDQPMKIFRLIDMGLGAEEGDPNRGGTPGFYDL 414

		              +L        AG+VH DI   NV++D+      +ID+GL +  G+  +G T  F   

		Sbjct: 251 AHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESF--- 307

		

		Query: 415 SSP--------ARHARDVYSVAQLLVHVLK 436

		            +P        A    DV+ V   L+H ++

		Sbjct: 308 KAPELGVGNLGASEKSDVFLVVSTLLHCIE 337

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score =  117 bits (295), Expect = 4e-31

		 Identities = 68/395 (17%), Positives = 127/395 (32%), Gaps = 48/395 (12%)

		

		Query: 51  GTVVPADGMIAITTPQSGVVANVGVVQGQRVAAGQVLFVLVA-EHRDDRGRPSQQAAAVL 109

		           G +  +     I   ++ +V  + V +G+ V  G VL  L A     D  +         

		Sbjct: 88  GKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR 147

		

		Query: 110 AEQQRLTAEAM------------------------DQLRAQGRLQQQ--AAARALAGLRN 143

		            EQ R    +                         + LR    +++Q             

		Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL 207

		

		Query: 144 RLEQVDAEL-GVLRHRQQLTQSIE------QRYRTALTRGLVSQQFVDEKQADVLDQRAH 196

		            L++  AE   VL    +              + + L +  +++  V E++   ++    

		Sbjct: 208 NLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267

		

		Query: 197 ALELQRERLTLADALAQAQAELQQLPVSLRQQLA--LAGASLQADRRTAIEQAAA---SR 251

		               + +   +   +  A+ E Q +    + ++   L   +      T            

		Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327

		

		Query: 252 SEVRAPRAGRVA-LRPLQRGQAVGQGQRLADLLPTSTATEVVLYAPSRAAGLIGPGIPVQ 310

		           S +RAP + +V  L+    G  V   + L  ++P     EV     ++  G I  G    

		Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387

		

		Query: 311 LRFDALPYQHYGQFAGRVVEIAA-APEPPRADAALASEPLYRVRVRLAGDAALRAGHAAV 369

		           ++ +A PY  YG   G+V  I   A E  R         ++ V + +  +          

		Sbjct: 388 IKVEAFPYTRYGYLVGKVKNINLDAIEDQR------LGLVFNVIISIEENCLSTGNKNIP 441

		

		Query: 370 LRPGMRVQGTLALEWRRFSQWAFEPLS-SLHGTLR 403

		           L  GM V   +    R    +   PL  S+  +LR

		Sbjct: 442 LSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLR 476

		

		

		>PF07675#Cleaved Adhesin

		          Length = 1358

		

		 Score = 30.8 bits (69), Expect = 0.010

		 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

		

		Query: 136 DEFRARLDDVATLRSEIWGDIIEGRYFEDPAHNIYGE-------WFQKNVS----RMHFP 184

		           ++ RA    V      +WGD    ++  D  HN +G         F    S      +F 

		Sbjct: 381 NDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSNLYSANFE 440

		

		Query: 185 PVIPDVPNPVENT--LIATGT---RIPCSGIWEPVDAPKP 219

		            + P   +PV  T  +I TG     IP       +  P+P

		Sbjct: 441 YLTPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEP 480

		

		

		>PYOCINKILLER#Pyocin S killer protein signature.

		          Length = 617

		

		 Score = 30.1 bits (67), Expect = 0.042

		 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 4/139 (2%)

		

		Query: 469 TSGGARHHDARVAELLQAQESARKVLADNQTRLVRERELAERIVALRAQLEAVPAAAEPA 528

		           +S   R +    A+      +A K          R+ E   R  A           A  +

		Sbjct: 198 SSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGS 257

		

		Query: 529 AAAAKPARGAAKQATAAASPQHAQLDALLAELGELQGETPMVPLQVDGGVVAEIVSAWTG 588

		             A    RG  + A  AAS   A  DA +A LG +    P V      G  +   S+ T 

		Sbjct: 258 VVATAAGRGLIQVAQGAASLAQAISDA-IAVLGRVLASAPSVMA---VGFASLTYSSRTA 313

		

		Query: 589 VPLGRMVKDEIRTVRNLDS 607

		                   D +R    +D+

		Sbjct: 314 EQWQDQTPDSVRYALGMDA 332

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 33.4 bits (76), Expect = 0.002

		 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

		

		Query: 68  IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127

		           +A     ++   L +E VC+ ++      FF  E +F  C+  D S + +    L +   

		Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299

		

		Query: 128 E-------------ELLAHTINTAH 139

		           +              L+ H  NTAH

		Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324

		

		

		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

		           signature.

		          Length = 1024

		

		 Score = 29.2 bits (65), Expect = 0.034

		 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

		

		Query: 174 EVLHHLLGTVTDAVIAYLAAQRAAGAQALQVFDTWGGVLSPAMYREFSLPYLTRIARELE 233

		           E+   +LG V   +  Y+ AQRA  AQ L       G+++ A+    S      IA + +

		Sbjct: 274 ELTTKVLGNVGKGISQYIIAQRA--AQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFK 331

		

		Query: 234 R----GEGPERTP---------LVLFGKGNGAYVADLAASGAEAVGVDWTISLADAAQRA 280

		           R     E  +R           L  F K  GA  A L         V   IS A      

		Sbjct: 332 RANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLV 391

		

		Query: 281 GGRVTL 286

		           G  V+ 

		Sbjct: 392 GAPVSA 397

		

		

		>CARBMTKINASE#Bacterial carbamate kinase signature.

		          Length = 314

		

		 Score = 28.3 bits (63), Expect = 0.017

		 Identities = 10/26 (38%), Positives = 18/26 (69%)

		

		Query: 60  RQHEADTLQALLEQDNKLISTGGGAV 85

		              EA+T++ L+E+   +I++GGG V

		Sbjct: 172 GHVEAETIKKLVERGVIVIASGGGGV 197

		

		

		>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein

		          signature.

		          Length = 591

		

		 Score = 28.6 bits (63), Expect = 0.001

		 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

		

		Query: 14 RGIAASAFFGFAAF-LPLLLSRERGLSPLLAGVALSVGALGWFSGSW 59

		          + ++ S   G A+  LPL +S ERG +P LA    S G  G F   W

		Sbjct: 25 KALSQSGPDGLASITLPLPISAERGFAPALALHYSSGGGNGPFGVGW 71

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 31.4 bits (71), Expect = 2e-04

		 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

		

		Query: 2   GAGAYSVALYVIVGRLYPEVLRPCVFAAFSAGWVVPSLIGPGISGWIVQHAGWRWVFLSV 61

		           GA A+   + V+V R  P+  R   F    +   +   +GP I G I  +  W ++ L +

		Sbjct: 116 GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL-I 174

		

		Query: 62  PLLAI 66

		           P++ I

		Sbjct: 175 PMITI 179

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 68.7 bits (168), Expect = 7e-15

		 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

		

		Query: 25  IKALVVDDSAVVRQVLVNVLNDAADIEVIATAADPLLAIEKMRKQWPDVIVLDVEMPRMD 84

		              LV DD A +R VL   L+ A     +   ++       +     D++V DV MP  +

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

		

		Query: 85  GITFLRKIMSERP-TPVVICSTLTEKGARVTMDALAAGAVAVVTKP-------------- 129

		               L +I   RP  PV++ S        +   A   GA   + KP              

		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPFDLTELIGIIGRAL 119

		

		Query: 130 ---RLGLKQFLTDSADELVATVRSAARANVKRLAARVTAAPL 168

		              +    +   DS D +    RSAA   + R+ AR+    L

		Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 59.1 bits (143), Expect = 1e-11

		 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

		

		Query: 11  MLAGPVLVVDDSVVQREHAMALCRQLGASVVDGAADGHAALAWLTRADAPSLLLVDLEMP 70

		           M    +LV DD    R        + G  V    ++      W+  A    L++ D+ MP

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWI-AAGDGDLVVTDVVMP 58

		

		Query: 71  GMDGVQLLDALARGKYSVPVVVVSQRGGTLIDAVMQLSRSAGVRVLGGIEKPMNLQDLA 129

		             +   LL  + + +  +PV+V+S    T + A+    + A       + KP +L +L 

		Sbjct: 59  DENAFDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGA----YDYLPKPFDLTELI 112

		

		

		>CHANLCOLICIN#Channel forming colicin signature.

		          Length = 522

		

		 Score = 32.7 bits (74), Expect = 0.005

		 Identities = 49/271 (18%), Positives = 99/271 (36%), Gaps = 7/271 (2%)

		

		Query: 451 AASEQAAGVEETSA-SLEQMTASIAQNTENARVTDSMAAKAASEAADGGDTVRATV-VAM 508

		           + SE +A +  T+  S  Q+  + A+    A+      AKA +        ++  V  A+

		Sbjct: 43  SKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKDIVNEAL 102

		

		Query: 509 KDIAKKIGIIDDIAYQTNLLALNAAIEAARAGEQGKGFAVVAAEVRKLAERSQIAAQEIG 568

		           +  A +     ++A+  N  A+ A  E  R  +  +     A    K  + ++   +EI 

		Sbjct: 103 RHNASRTPSATELAHANNA-AMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIE 161

		

		Query: 569 EVAESS---VELAESAGRVLGEMVPSIRRTSDLVQEIAAASEEQTAGVSQINTAVGQLNQ 625

		                +   ++LAE+  + L  +    +      ++++AA  E      +I T   +L+ 

		Sbjct: 162 REKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSS 221

		

		Query: 626 TTQSAAANAEELAATSEEMSAQAEQLQQLMGFFRLGNGGRAAASGSSRPGPRRIAAHAPA 685

		           +  +  A  + LA    E+ AQA    + +         RA     +RP          A

		Sbjct: 222 SIHARDAEMKTLAGKRNEL-AQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGA 280

		

		Query: 686 AASSAPPRRTNVRQISAVAATADAIDESQFA 716

		                  ++      + +      I + Q A

		Sbjct: 281 GKIREEKQKQVTASETRINRINADITQIQKA 311

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 36.0 bits (83), Expect = 4e-04

		 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

		

		Query: 396 LVRNAMDHGIEPADVRVARGKQARGTVGLNAYHDSGSIVIQITDDGGGLNRD 447

		           LV N + HGI              G + L    D+G++ +++ + G    ++

		Sbjct: 263 LVENGIKHGIAQ--------LPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 35.3 bits (81), Expect = 5e-05

		 Identities = 11/53 (20%), Positives = 21/53 (39%)

		

		Query: 109 ILVSSFVAGQGLGRQLMRKLVKWARRKYLDCLFGDVLQSNLPMLQLAESLGFK 161

		           I V+     +G+G  L+ K ++WA+  +   L  +    N+          F 

		Sbjct: 95  IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 28.6 bits (64), Expect = 0.041

		 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

		

		Query: 47  EVPSPVDGVLKEIKFEAGSTVTSNQILAIIEEGAVAAAAPADEKKAAAPAAAAPAAAPAA 106

		           E+    + ++KEI  + G +V    +L  +   A+ A A   + +++   A         

		Sbjct: 98  EIKPIENSIVKEIIVKEGESVRKGDVLLKLT--ALGAEADTLKTQSSLLQARLEQTRYQI 155

		

		Query: 107 AAAPAPASTSAADSLPPGARFSAITQG 133

		            +     +      LP    F  +++ 

		Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEE 182

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 70.2 bits (172), Expect = 8e-16

		 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

		

		Query: 159 QGQQVLVVEDDEQVRLLVTELLSELGYQADVVADADAALPILASPRRIDLLVTDVGLPGL 218

		            G  +LV +DD  +R ++ + LS  GY   + ++A      +A+    DL+VTDV +P  

		Sbjct: 2   TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE 60

		

		Query: 219 NGRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVLG 278

		           N   L    +++R DLPV+ M+                   + KPF L E  G +   L 

		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

		

		Query: 279 P 279

		            

		Sbjct: 121 E 121

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  149 bits (377), Expect = 2e-43

		 Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 37/289 (12%)

		

		Query: 173 QRGFIDTDAASAQTVTQGRGVVIAVVDTGVDTNHPDLKARIRDVHDLVD----DKPVMTS 228

		            RG     A +    T+GRGV +AV+DTG D +HPDLKARI    +  D    D  +   

		Sbjct: 23  PRGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKD 82

		

		Query: 229 TDSHGTEVAGIIAAGSNNHQGIVGMAPKAMLSVYKACWYAPTVGATARCNTFTLAKALAA 288

		            + HGT VAG IAA  N + G+VG+AP+A L + K      +           + + +  

		Sbjct: 83  YNGHGTHVAGTIAATENEN-GVVGVAPEADLLIIKVLNKQGSGQYDW------IIQGIYY 135

		

		Query: 289 INNSSARVINLSLGGPAD-PLLSKMLEQLVQQGRIVLAAM------PPNERLDGFPNDVP 341

		                  +I++SLGGP D P L + +++ V    +V+ A              G+P    

		Sbjct: 136 AIEQKVDIISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYN 195

		

		Query: 342 GVLVV--------RSSSATPAMPGVLSAPGKDILTTQPNGHYDFTSGSSMATAHVSGMAA 393

		            V+ V         S  +       L APG+DIL+T P G Y   SG+SMAT HV+G  A

		Sbjct: 196 EVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALA 255

		

		Query: 394 LLLSLQPSMDAKALHALMQRTSKVS-----------DGQLQVNAGAAVQ 431

		           L+  L  +   + L         +            +G   +   A  +

		Sbjct: 256 LIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVEE 304

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 29.6 bits (66), Expect = 0.001

		 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

		

		Query: 23   AKAAPQQTGRGATAQKAGDAKAKSEAERKAERRAAAAAQKPKGDVSPREEEEEQTPAR 80

		             +    +T   AT +K    KAK E E+  E     +   PK +      + +  PAR

		Sbjct: 1093 KETQTTETKETATVEKEE--KAKVETEKTQEVPKVTSQVSPKQE-QSETVQPQAEPAR 1147

		

		

		

		 Score = 26.2 bits (57), Expect = 0.017

		 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

		

		Query: 16   VAALPAMAKAAPQQTGRGATAQKAGDAKAKSEAERKAERRAAAAAQKPK--GDVSPREEE 73

		            V A     + A   +    T        A  E E KA+       + PK    VSP++E+

		Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135

		

		Query: 74   EEQT 77

		             E  

		Sbjct: 1136 SETV 1139

		

		

		>CARBMTKINASE#Bacterial carbamate kinase signature.

		          Length = 314

		

		 Score = 35.6 bits (82), Expect = 2e-04

		 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

		

		Query: 141 GALPVINENDTVSVDELKLGDNDNLAAIVAALVDADALFIATDIDGLY 188

		           G +PVI E+  +   E  + D D     +A  V+AD   I TD++G  

		Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAA 241

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 81.8 bits (202), Expect = 6e-19

		 Identities = 61/342 (17%), Positives = 113/342 (33%), Gaps = 71/342 (20%)

		

		Query: 286 TVMVTGAGGSIGSEVCRQCARHGARRI----------VLLEIDELALLTIDSDLRRLFPD 335

		             +VTGA G IG  V ++    G + +          V L+   L LL          P 

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA--------QPG 53

		

		Query: 336 IEVVRVLGDCGDPAVVAHALNTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVAR 395

		            +  +   D  D   +     +   + VF +     V    E       +N+    N+  

		Sbjct: 54  FQFHK--IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILE 111

		

		Query: 396 ACQRARIETFVFIST---------------DKAVEPVNVLGASKRYAEMICQSLDA-RDA 439

		            C+  +I+  ++ S+               D    PV++  A+K+  E++  +       

		Sbjct: 112 GCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171

		

		Query: 440 PTRFITVRFGNVLDSAGS---VVPLFREQIRQGGPVTV-THPDVTRYFMTIPEACQLVIQ 495

		           P     +RF  V    G     +  F + + +G  + V  +  + R F  I +  + +I+

		Sbjct: 172 PA--TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229

		

		Query: 496 A------------------AASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAI 537

		                              AAS +   +Y +    PV +       I+      G +   

		Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVEL----MDYIQALEDALGIEAKK 285

		

		Query: 538 LYTGLRPGEKLHE----TLFYSDEDYRPTAHPKILEAGVREF 575

		               L+PG+ L         Y    + P      ++ GV+ F

		Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPETT---VKDGVKNF 324

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 31.3 bits (71), Expect = 0.008

		 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

		

		Query: 219 VGAAVGVGGDTEQRIELLAAAGVDVVIVDTAHGHSQGVIDRVAWVKKTYPQLQVIGGNIV 278

		            G  V +  +       +AA   D+V+ D          D +  +KK  P L V+   ++

		Sbjct: 26  AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA-FDLLPRIKKARPDLPVL---VM 81

		

		Query: 279 TG----DAALALMDAGA 291

		           +       A+   + GA

		Sbjct: 82  SAQNTFMTAIKASEKGA 98

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 38.5 bits (89), Expect = 1e-06

		 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

		

		Query: 4   EVTPKGVCVLSVAPGWIETEASVAFAQRMGKEAGTDYKGGKKIVMEWLG----GIPVGRP 59

		           E+    +    V+PG  ET+        M      D  G ++++   L     GIP+ + 

		Sbjct: 174 ELAEYNIRCNIVSPGSTETD--------MQWSLWADENGAEQVIKGSLETFKTGIPLKKL 225

		

		Query: 60  AQPQEVADLIAFFASPRAASIAGSEYRIDGGT 91

		           A+P ++AD + F  S +A  I      +DGG 

		Sbjct: 226 AKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257

		

		

		>PF07132#Harpin protein (HrpN)

		          Length = 356

		

		 Score = 25.0 bits (54), Expect = 0.044

		 Identities = 13/43 (30%), Positives = 17/43 (39%)

		

		Query: 6   GRQDGVAGGNQAQRQLASTCAMAYIEGVADAGTGARWCGAGQV 48

		           G      GG    +Q +S    AY +GV DA +     G  Q 

		Sbjct: 143 GGMSQQQGGLFGNKQPSSPEISAYTQGVNDALSAILGNGLSQT 185

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score = 28.2 bits (63), Expect = 0.049

		 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

		

		Query: 60  YPRLGANAGAGVRFSKA--NLLRLGIILYGLR 89

		             R  +N+ A +   +A  + +R GIILYG  

		Sbjct: 185 CRRSLSNSAATLWHPEAHFDWVRPGIILYGAS 216

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 43.3 bits (102), Expect = 1e-07

		 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

		

		Query: 52  LMDLQMPRVDGVEAIQRIRQVDAAATVIVPPTYTGDVRAVRALQSGACGYLLKSGMRREL 111

		           + D+ MP  +  + + RI++      V+V       + A++A + GA  YL K     EL

		Sbjct: 52  VTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111

		

		Query: 112 VDTIRDVGNCCQALAPRPDKAKR 134

		           +  I       +ALA    +  +

		Sbjct: 112 IGIIG------RALAEPKRRPSK 128

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score =  280 bits (718), Expect = 7e-87

		 Identities = 140/574 (24%), Positives = 237/574 (41%), Gaps = 84/574 (14%)

		

		Query: 260 KAIRMVYSDVPGERVRTEDTPVE---LRSTFSISDEDVQELSKQAL---------VIEKH 307

		           KA   +  +V  E+    D   E   L +    S E+++ +  Q           +   H

		Sbjct: 18  KAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAH 77

		

		Query: 308 YGRPMDIEWAKDGVSGKLFIVQARPETVKSRSHATQIERFSLEAKDAKILVEGRAVGAKI 367

		                D E     + GK+   Q   E          +  F  E+ D + + E RA  A I

		Sbjct: 78  LLVLDDPELVDG-IKGKIENEQMNAEYALKEVSDMFVSMF--ESMDNEYMKE-RA--ADI 131

		

		Query: 368 GSGVARVVRSLD-----DMNRVQNGDVLIA-DMTDPDWEPVMK-RASAIVTNRGGRTCHA 420

		                RV+  L       +  +    V+IA D+T  D   + K       T+ GGRT H+

		Sbjct: 132 RDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHS 191

		

		Query: 421 AIIARELGVPAVVGSGNATDVLSDGQEVTVSCAEG---------DTGFIYEGLLPFERTT 471

		           AI++R L +PAVVG+   T+ +  G  V V   EG         +     E    FE+  

		Sbjct: 192 AIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQK 251

		

		Query: 472 TDLGNMPPAP--------LKIMMNVANPERAFDFGQLPNAGIGLARLEMIIAAHIGIHPN 523

		            +   +   P        +++  N+  P+           GIGL R E +         +

		Sbjct: 252 QEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDR-----D 306

		

		Query: 524 ALLEYDKQDADIRKKIDAKIAGYGDPVSFYVNRLAEGIATLTASVAPNTVIVRLSDFKSN 583

		            L   ++Q    ++ +       G PV                       ++R  D   +

		Sbjct: 307 QLPTEEEQFEAYKEVVQRM---DGKPV-----------------------VIRTLDIGGD 340

		

		Query: 584 EYANLIGGSRYEPHEENPMIGFRGASRYVDPSFTKAFALECKAVLKVRNEMGLDNLWVMI 643

		           +  + +      P E NP +GFR     ++      F  + +A+L+        NL VM 

		Sbjct: 341 KELSYL----QLPKELNPFLGFRAIRLCLE--KQDIFRTQLRALLRAS---TYGNLKVMF 391

		

		Query: 644 PFVRTLEEGRKVIEVLEQNGLKQ-GDGADGKPGLKIIMMCELPSNALLADEFLDIFDGFS 702

		           P + TLEE R+   ++++   K   +G D    +++ +M E+PS A+ A+ F    D FS

		Sbjct: 392 PMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFS 451

		

		Query: 703 IGSNDLTQLTLGLDRDSSIVAHLFDERNPAVKKLLSMAIKSARAKGKYVGICGQGPSDHP 762

		           IG+NDL Q T+  DR +  V++L+   +PA+ +L+ M IK+A ++GK+VG+CG+   D  

		Sbjct: 452 IGTNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-E 510

		

		Query: 763 ELAEWLMQEGIESVSLNPDTVVDTWLRLAKLKSE 796

		                L+  G++  S++  +++    +L KL  E

		Sbjct: 511 VAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544

		

		

		>CLENTEROTOXN#Clostridium enterotoxin signature.

		          Length = 319

		

		 Score = 31.6 bits (71), Expect = 0.003

		 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

		

		Query: 3   TIRPVFYVSDGTGITAETIGHSLLTQF--SGFNFVTDRMSFIDDAEKARDAAMRVRAAGE 60

		           +      V+   G T+E I  S+   F  +     T   S    A        +V A   

		Sbjct: 78  SKEVSINVNFSVGFTSEFIQASVEYGFGITIGEQNTIERSVSTTAGPNEYVYYKVYATYR 137

		

		Query: 61  RYQV 64

		           +YQ 

		Sbjct: 138 KYQA 141

		

		

		>BACTRLTOXIN#Bacterial toxin signature.

		          Length = 266

		

		 Score = 28.3 bits (63), Expect = 0.012

		 Identities = 7/30 (23%), Positives = 14/30 (46%)

		

		Query: 73  YDLCDPVTGEPDPSAYVRLYRDARQAETTH 102

		           YD+      + D S Y+ +Y D +  ++  

		Sbjct: 225 YDMMPAPGDKFDQSKYLMMYNDNKTVDSKS 254

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  102 bits (254), Expect = 4e-28

		 Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 11/255 (4%)

		

		Query: 2   RSILITGAGSGIGAGIATQLATDGHHLIVSDMELAAAERTAHALRQAGGSAEALALDVTD 61

		           +   ITGA  GIG  +A  LA+ G H+   D      E+   +L+     AEA   DV D

		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68

		

		Query: 62  ADSIAQALASASRAPQ---VLVNNAGLQHVAALDEFPMQQWALLVDVMLTGAARLSRAVL 118

		           + +I +  A   R      +LVN AG+     +     ++W     V  TG    SR+V 

		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128

		

		Query: 119 PGMRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPS 178

		             M     G IV +GS  + V     +AY ++K   V   K + LE A+ +I  N + P 

		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188

		

		Query: 179 YVCTPLVERQIADQARTRGIAEDAVIRDVMLK---PMPKGAFIDYDELAGTVAFLMSPAA 235

		              T +     AD+        + VI+  +      +P        ++A  V FL+S  A

		Sbjct: 189 STETDMQWSLWADEN-----GAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243

		

		Query: 236 RNITGQSIAIDGGWT 250

		            +IT  ++ +DGG T

		Sbjct: 244 GHITMHNLCVDGGAT 258

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 33.4 bits (76), Expect = 3e-04

		 Identities = 13/91 (14%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

		

		Query: 2   RQDDQRLIRLLAATLTRRPRSNLT--ELAAGAGISRATLYRFAPTRAAIVEKVTAEAWVR 59

		           ++  Q ++ +     +++  S+ +  E+A  AG++R  +Y     ++ +  ++   +   

		Sbjct: 10  QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69

		

		Query: 60  LQAALPG--GDASPDPMTRLRRTTHALVEDL 88

		           +             DP++ LR     ++E  

		Sbjct: 70  IGELELEYQAKFPGDPLSVLREILIHVLEST 100

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 45.6 bits (108), Expect = 2e-07

		 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 28/213 (13%)

		

		Query: 100 EAAVARARGELTRSEAELENATAQFERSQQLVQRQVISRQDFDT-ARSNFKSTQAAVASA 158

		           E     A  EL   +++LE   ++   +++      +  Q F        + T   +   

		Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKE---EYQLVTQLFKNEILDKLRQTTDNIGLL 314

		

		Query: 159 RAALKTAQLDLGFATVRAPIDGRIGRALV-TEGALVGQGGDATEMALVQQLDPIFADFNR 217

		              L   +     + +RAP+  ++ +  V TEG +V      T M +V + D +      

		Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA--ETLMVIVPEDDTLEVTALV 372

		

		Query: 218 PVAEALKLRCRARKGDAPLKVVIDIPELGQTREGDL------LFADMRVDETTDTV--SL 269

		              +   +             +I +     TR G L      +  D   D+    V   +

		Sbjct: 373 QNKDIGFIN-------VGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425

		

		Query: 270 RAQ------FDNRDNLLLPGMFVRVRTPNGTAS 296

		            +         N++  L  GM V      G  S

		Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458

		

		

		

		 Score = 40.6 bits (95), Expect = 7e-06

		 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 8/133 (6%)

		

		Query: 55  PGRVSPM-RVAQVRARVAGIVLARRFEEGSDVKAGQVLFQIDPAPFEAAVARARGELTRS 113

		            G+++   R  +++     IV     +EG  V+ G VL ++     EA   + +  L ++

		Sbjct: 87  NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146

		

		Query: 114 EAELENATAQFERSQQLVQRQVISRQDFDTARS----NFKSTQAAVASARAALK--TAQL 167

		             E         RS +L +   +   D    ++          + +    +  +    Q 

		Sbjct: 147 RLEQTRYQIL-SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205

		

		Query: 168 DLGFATVRAPIDG 180

		           +L     RA    

		Sbjct: 206 ELNLDKKRAERLT 218

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 1072 bits (2773), Expect = 0.0

		 Identities = 501/1030 (48%), Positives = 693/1030 (67%), Gaps = 10/1030 (0%)

		

		Query: 1    MSRFFIDRPNFAWVVAIFISLAGLLALRTLPVEKYPEVAPPQISIMATYPGASAQVVNDA 60

		            M+ FFI RP FAWV+AI + +AG LA+  LPV +YP +APP +S+ A YPGA AQ V D 

		Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

		

		Query: 61   VTSVIEQELNGARDMLYYDSSS-SNGSAQITITFQPGTDPSIAQVDVQNRIRQSESRLPA 119

		            VT VIEQ +NG  +++Y  S+S S GS  IT+TFQ GTDP IAQV VQN+++ +   LP 

		Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

		

		Query: 120  AVTQLGLQVEQTTAGFLMLYSLVYKDATAAQDVVRLNDYAARVVNDEIRRVPGVGRVQFF 179

		             V Q G+ VE++++ +LM+   V  +    QD   ++DY A  V D + R+ GVG VQ F

		Sbjct: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQD--DISDYVASNVKDTLSRLNGVGDVQLF 178

		

		Query: 180  GAEAAMRVWVDIQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQDQELTTTLVVRG 239

		            GA+ AMR+W+D   L  Y L+ VDV N ++ QN Q+AAG LG  P    Q+L  +++ + 

		Sbjct: 179  GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238

		

		Query: 240  LMESPQDFGQIVLRAQANGAVVHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGN 299

		              ++P++FG++ LR  ++G+VV L DVA++ELG ENY    + NG PAAG  ++LA G N

		Sbjct: 239  RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298

		

		Query: 300  AVATVAAVRKRLQELSQSFPADIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVF 359

		            A+ T  A++ +L EL   FP  +    P+D++ FV ++I +V+ TL EA+ LVFLVM++F

		Sbjct: 299  ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358

		

		Query: 360  LQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENVER 419

		            LQN+R TLIP I VPV LLGTFA++   G+S+N ++MF MVLAIG+LVDDAIVVVENVER

		Sbjct: 359  LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418

		

		Query: 420  LMADEGLSPRDASMKAMTQVGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSI 479

		            +M ++ L P++A+ K+M+Q+ GA+VGI +VL+AVF+P+AF  GS G IYRQFS  +  ++

		Sbjct: 419  VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478

		

		Query: 480  LFSGFLALTMTPALCATCLAPI--DGHQEKKGFFGWFDRHFNALTSRFDRLNHRLVHRAG 537

		              S  +AL +TPALCAT L P+  + H+ K GFFGWF+  F+   + +     +++   G

		Sbjct: 479  ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538

		

		Query: 538  RCMLVYVVLLGVLGLAYVRLPEAFVPQEDEGYMIVDMQLPPGASYSRTRAAGQQVNDYL- 596

		            R +L+Y +++  + + ++RLP +F+P+ED+G  +  +QLP GA+  RT+    QV DY  

		Sbjct: 539  RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598

		

		Query: 597  -AARPSMQDVTLVYGFSFSGSGANAAMAFPSLRDWSER-GDSESAANEVAAANVALGRIS 654

		               + +++ V  V GFSFSG   NA MAF SL+ W ER GD  SA   +  A + LG+I 

		Sbjct: 599  KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658

		

		Query: 655  DATIMAVMPPPIEGLGNSGGFSLRVQDRGNLGRDALMQAVNQLLRAANQSP-KLAYAMVE 713

		            D  ++    P I  LG + GF   + D+  LG DAL QA NQLL  A Q P  L      

		Sbjct: 659  DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718

		

		Query: 714  GLADAPQLRLEVDRGKAEALGVSFQSAMDVLSSAFGSTIVNDFVNRGRLQRVVVQGAAGD 773

		            GL D  Q +LEVD+ KA+ALGVS       +S+A G T VNDF++RGR++++ VQ  A  

		Sbjct: 719  GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778

		

		Query: 774  RATPQSLDTLHVTSSTGRQVPLTAFTTQRWEQGPVQIARYNGYASVNLTGEAAPGISSGD 833

		            R  P+ +D L+V S+ G  VP +AFTT  W  G  ++ RYNG  S+ + GEAAPG SSGD

		Sbjct: 779  RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838

		

		Query: 834  ALAEMERLAAALPQGIGYAWSALSYQEKAAGTQAPMLLGLALLVVFLLLVALYESWAIPF 893

		            A+A ME LA+ LP GIGY W+ +SYQE+ +G QAP L+ ++ +VVFL L ALYESW+IP 

		Sbjct: 839  AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898

		

		Query: 894  SVMLIVPIGAVGATAAVWVAGLSNDVYFKVGLITIIGLAAKNAILIVEFAKELHAR-GAR 952

		            SVML+VP+G VG   A  +    NDVYF VGL+T IGL+AKNAILIVEFAK+L  + G  

		Sbjct: 899  SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958

		

		Query: 953  VPEAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQNALGTGVIGGMLAASTLGV 1012

		            V EA + A R+R RPI+MTSLAFILGV+PL I+ GAG+ +QNA+G GV+GGM++A+ L +

		Sbjct: 959  VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018

		

		Query: 1013 VFTPIFFTWV 1022

		             F P+FF  +

		Sbjct: 1019 FFVPVFFVVI 1028

		

		

		

		 Score = 61.0 bits (148), Expect = 2e-11

		 Identities = 83/508 (16%), Positives = 172/508 (33%), Gaps = 49/508 (9%)

		

		Query: 540  MLVYVVLLGVLGLAYVRLPEAFVPQEDEGYMIVDMQLPPGASYSRTRAAGQQVNDYL-AA 598

		            + + +++ G L  A ++LP A  P      + V    P GA     +     V   +   

		Sbjct: 15   LAIILMMAGAL--AILQLPVAQYPTIAPPAVSVSANYP-GAD---AQTVQDTVTQVIEQN 68

		

		Query: 599  RPSMQDVTLVYGFSFSGSGANAAMAFPSLRDWSERGDSESAANEVAAANVALGRISDATI 658

		               + ++  +   S S       + F          D + A  +V      L   +    

		Sbjct: 69   MNGIDNLMYMSSTSDSAGSVTITLTFQ------SGTDPDIAQVQVQNK---LQLATPLLP 119

		

		Query: 659  MAVMPPPIEGLGNSGGF---SLRVQDRGNLGRDALMQAVNQLLRAANQSPKLAYAMVEGL 715

		              V    I    +S  +   +  V D     +D +   V   ++       L+   + G+

		Sbjct: 120  QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK-----DTLS--RLNGV 172

		

		Query: 716  ADAP------QLRLEVDRGKAEALGVSFQSAMDVLSS-----AFGSTIVNDFVNRGRLQR 764

		             D         +R+ +D        ++    ++ L       A G       +   +L  

		Sbjct: 173  GDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNA 232

		

		Query: 765  VVVQGAAGDRATPQSLDTLHVTSST-GRQVPLTAFTTQRW-EQGPVQIARYNGYASVNLT 822

		             ++  A      P+    + +  ++ G  V L          +    IAR NG  +  L 

		Sbjct: 233  SII--AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLG 290

		

		Query: 823  GEAAPGISSGDAL----AEMERLAAALPQG--IGYAWSALSYQEKAAGTQAPMLLGLALL 876

		             + A G ++ D      A++  L    PQG  + Y +    + + +       L    +L

		Sbjct: 291  IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350

		

		Query: 877  VVFLLLVALYESWAIPFSVMLIVPIGAVGATAAVWVAGLSNDVYFKVGLITIIGLAAKNA 936

		            V  ++ + L ++        + VP+  +G  A +   G S +     G++  IGL   +A

		Sbjct: 351  VFLVMYLFL-QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDA 409

		

		Query: 937  ILIVE-FAKELHARGARVPEAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQNA 995

		            I++VE   + +        EA  ++       +V  ++      IP+    G+  A    

		Sbjct: 410  IVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

		

		Query: 996  LGTGVIGGMLAASTLGVVFTPIFFTWVM 1023

		                ++  M  +  + ++ TP     ++

		Sbjct: 470  FSITIVSAMALSVLVALILTPALCATLL 497

		

		

		>PF05043#Transcriptional activator

		          Length = 493

		

		 Score = 31.8 bits (72), Expect = 0.006

		 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

		

		Query: 68  IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGE 124

		           +A     ++   L +E VC+ ++      FF  E +F  C+  D S + +    L +

		Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSD 296

		

		

		>SUBTILISIN#Subtilisin serine protease family (S8) signature.

		          Length = 326

		

		 Score =  121 bits (304), Expect = 5e-32

		 Identities = 70/318 (22%), Positives = 117/318 (36%), Gaps = 39/318 (12%)

		

		Query: 78  NADLAQQAGAKGKGVKLAVLDDNLVQSYAPISGKVDSFNDYTASPGTPESSANALRGHGT 137

		            A        +G+GVK+AVLD      +  +  ++    ++T              GHGT

		Sbjct: 30  QAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGT 88

		

		Query: 138 IVSALVLGSAQDGFAGGVAPDADLFYARICAENSCGTQATRRAAVDLAAA-GVRIANLSI 196

		            V+  +  +  +    GVAP+ADL   ++  +   G        +  A    V I ++S+

		Sbjct: 89  HVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSL 148

		

		Query: 197 GASYPDAAASANAALAWKYALTPLVQADALIVASTGNEGAAEAS-----YPAATPVQEAS 251

		           G              A K A    V +  L++ + GNEG  +       YP         

		Sbjct: 149 GGPEDVPELHE----AVKKA----VASQILVMCAAGNEGDGDDRTDELGYPGCYN----- 195

		

		Query: 252 VRNNWLAVGAINIDSAGNAAGLTSYSNHCGAAAQWCLVAPGSYTVPALAGSELGGQIAGT 311

		                ++VGAIN D        + +SN      +  LVAPG   +  + G +     +GT

		Sbjct: 196 ---EVISVGAINFDR-----HASEFSNSN---NEVDLVAPGEDILSTVPGGKY-ATFSGT 243

		

		Query: 312 SFSTAAVSGVAAQVLGVYPW-----MTASQLQQTLLTTATDLGDPGVDALYGWGLVNAAK 366

		           S +T  V+G  A +  +        +T  +L   L+     LG      + G GL+    

		Sbjct: 244 SMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLYLTA 301

		

		Query: 367 AIKGPGQFASDWAINVTS 384

		             +    F +     + S

		Sbjct: 302 VEELSRIFDTQRVAGILS 319