JEONG1266_00195	JEONG1266_00310	Y	Y	Y	JEONG1266_00120	JEONG1266_00335
	JEONG1266_00195	4	23	-0.300712	hypothetical protein
	JEONG1266_28095	3	25	5.251729	transposase
	JEONG1266_00210	3	26	5.221072	protein encoded within IS
	JEONG1266_00215	2	23	5.285841	transposase
	JEONG1266_00220	3	25	5.019794	transposase
	JEONG1266_00225	1	19	0.267817	isocitrate lyase
	JEONG1266_28100	2	27	-8.232082	hypothetical protein
	JEONG1266_28105	3	30	-9.785039	transposase
	JEONG1266_28110	5	36	-11.733436	transposase
	JEONG1266_00250	7	46	-15.949003	cytotoxin
	JEONG1266_00255	7	46	-15.587535	cytotoxin
	JEONG1266_00260	6	45	-15.125166	DDE endonuclease
	JEONG1266_00265	8	47	-14.496856	T3SS effector protein NleE
	JEONG1266_00270	6	44	-12.767529	non-LEE encoded effector protein NleB
	JEONG1266_00275	5	42	-10.652938	enterotoxin
	JEONG1266_00280	5	33	-2.461823	integrase
	JEONG1266_00285	5	29	-1.604934	transposase
	JEONG1266_00290	4	25	1.430123	hypothetical protein
	JEONG1266_00300	3	25	0.363408	hypothetical protein
	JEONG1266_00305	2	24	0.968689	hypothetical protein
	JEONG1266_00310	2	25	0.773532	transposase
	57#JEONG1266_00305	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	76	2e-20
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score = 75.7 bits (186), Expect = 2e-20
		 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
		
		Query: 22  DIKYYSFLAGPAYRLNDYISFYGLVGISHTKAKGDYEWRNSVGADESDGYLSESVSKKST 81
		             +YY   AGPAYR+ND+ S YG+VG+ + K +            E   Y          
		Sbjct: 82  KNQYYGITAGPAYRINDWASIYGVVGVGYGKFQ----------TTEYPTY---KHDTSDY 128
		
		Query: 82  DFAYAAGVIINPWGNMSVNVGYEGTKADIYGKHSVNGFTVGVGYRF 127
		            F+Y AG+  NP  N++++  YE ++        V  +  GVGYRF
		Sbjct: 129 GFSYGAGLQFNPMENVALDFSYEQSRI---RSVDVGTWIAGVGYRF 171
		
		
JEONG1266_00880	JEONG1266_01070	Y	Y	Y	JEONG1266_00795	JEONG1266_01005
	JEONG1266_00880	-2	23	-4.931316	xanthine dehydrogenase molybdenum-binding
	JEONG1266_00885	2	38	-10.475166	hypothetical protein
	JEONG1266_00895	4	42	-12.882678	*hypothetical protein
	JEONG1266_00900	5	44	-13.538126	hypothetical protein
	JEONG1266_00905	3	44	-12.569330	hypothetical protein
	JEONG1266_00910	3	43	-12.605516	AraC family transcriptional regulator
	JEONG1266_00915	3	42	-12.695157	EscC/YscC/HrcC family type III secretion system
	JEONG1266_00920	3	42	-12.595642	type III secretion system protein
	JEONG1266_00925	4	44	-12.653325	EscV/YscV/HrcV family type III secretion system
	JEONG1266_00930	2	43	-12.597122	EscN/YscN/HrcN family type III secretion system
	JEONG1266_00935	3	47	-15.110773	type III secretion protein
	JEONG1266_00940	4	48	-14.605741	hypothetical protein
	JEONG1266_00945	5	50	-15.565059	type III secretion protein
	JEONG1266_00950	6	50	-15.758465	type III secretion system protein
	JEONG1266_00955	5	50	-16.042461	EscR/YscR/HrcR family type III secretion system
	JEONG1266_00960	5	51	-16.523633	EscS/YscS/HrcS family type III secretion system
	JEONG1266_00965	5	50	-16.490537	EscU/YscU/HrcU family type III secretion system
	JEONG1266_00970	5	51	-17.001130	invasion protein
	JEONG1266_00975	5	52	-16.061551	LuxR family transcriptional regulator
	JEONG1266_00980	5	53	-16.463239	EscF/YscF/HrpA family type III secretion system
	JEONG1266_00985	6	53	-16.595897	hypothetical protein
	JEONG1266_00990	7	52	-16.196790	EscJ/YscJ/HrcJ family type III secretion inner
	JEONG1266_00995	6	52	-16.268731	secretion protein
	JEONG1266_01000	6	49	-16.867257	hypothetical protein
	JEONG1266_01005	5	49	-17.646082	hypothetical protein
	JEONG1266_01015	6	50	-17.331040	LuxR family transcriptional regulator
	JEONG1266_01020	5	50	-17.287825	lytic transglycosylase
	JEONG1266_01025	6	51	-18.068867	hypothetical protein
	JEONG1266_01030	7	53	-18.784948	transcriptional regulator
	JEONG1266_28120	6	51	-20.083673	hypothetical protein
	JEONG1266_01040	6	51	-19.859162	CesD/SycD/LcrH family type III secretion system
	JEONG1266_01045	4	45	-17.573729	hypothetical protein
	JEONG1266_01050	2	44	-16.435914	hypothetical protein
	JEONG1266_01055	1	36	-12.800115	hypothetical protein
	JEONG1266_01060	-1	31	-8.885532	hypothetical protein
	JEONG1266_01065	1	24	-6.976069	hypothetical protein
	JEONG1266_01070	1	19	-4.768958	hypothetical protein
	166#JEONG1266_00885	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	37	4e-05
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 37.1 bits (86), Expect = 4e-05
		 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
		
		Query: 160 AAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTD 219
		           A   GK+ + G           IK  E+ I        ++V  G+SV+ G  +  + +  
		Sbjct: 84  ATANGKLTHSGRSK-------EIKPIENSIV-----KEIIVKEGESVRKGDVLLKLTALG 131
		
		Query: 220 AASVRLHFQIRYRATAIDPLRY 241
		           A +  L  Q       ++  RY
		Sbjct: 132 AEADTLKTQSSLLQARLEQTRY 153
		
		
	171#JEONG1266_00915	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	448	e-154
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		           family signature.
		          Length = 607
		
		 Score =  448 bits (1155), Expect = e-154
		 Identities = 158/536 (29%), Positives = 271/536 (50%), Gaps = 54/536 (10%)
		
		Query: 34  YVANKENLRSFFETVSSYAGKPTIVSKLAMKKQISGNFDLTEPYALIERLSAQMGLIWYD 93
		           YVA  E+LR       +      +VS     K +SG F+   P   ++ +++   L+WY 
		Sbjct: 38  YVAKGESLRDLLTDFGANYDATVVVSDKINDK-VSGQFEHDNPQDFLQHIASLYNLVWYY 96
		
		Query: 94  DGKAIYIYDSSEMRNALINLRKVSTNEFNNFLKKSGLYNSRYEIKGD-GNGTFYVSGPPV 152
		           DG  +YI+ +SE+ + LI L++    E    L++SG++  R+  + D  N   YVSGPP 
		Sbjct: 97  DGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPR 156
		
		Query: 153 YVDLVVNAAKLMEQNSD--GIEIGRNKVGIIHLVNTFVNDRTYELRGEKIVIPGMAKVLS 210
		           Y++LV   A  +EQ +     + G   + I  L     +DRT   R +++  PG+A +L 
		Sbjct: 157 YLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQ 216
		
		Query: 211 TLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIISTAGAPETDDI 270
		            +L++              ++ QQ+   ++  P                  A    +   
		Sbjct: 217 RVLSD--------------ATIQQVTVDNQRIPQ-----------------AATRASAQA 245
		
		Query: 271 QIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRHIELSLWIIDIDKTDLEQLGADWSG 330
		           ++ A P  N+++V+ +  ++   ++L+  LD P   IE++L I+DI+   L +LG DW  
		Sbjct: 246 RVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRV 305
		
		Query: 331 TIKIGSSLSASFNNSG----------SISTLDG---TQFIATIQALAQKRRAAVVARPVV 377
		            I+ G++       +G            S +D       +A +  L  +  A VV+RP +
		Sbjct: 306 GIRTGNNHQVVIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTL 365
		
		Query: 378 LTQENIPAIFDNNRTFYTKLVGERTAELDEVTYGTMISVLPRFAARN---QIELLLNIED 434
		           LTQEN  A+ D++ T+Y K+ G+  AEL  +TYGTM+ + PR   +    +I L L+IED
		Sbjct: 366 LTQENAQAVIDHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425
		
		Query: 435 GNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKIPILGSIPFI 494
		           GN+   + + ++ +P + RT++ T+ARV  G+SL+IGG  RD  +    K+P+LG IP+I
		Sbjct: 426 GNQ-KPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYI 484
		
		Query: 495 GKLFGYEGTNANNIVRVFLIEPREIDERMMNNANEAAVDARAITQQMAKNKEINDE 550
		           G LF  +       VR+F+IEPR IDE + ++   A  + + +   +    EI+++
		Sbjct: 485 GALFRRKSELTRRTVRLFIIEPRIIDEGIAHHL--ALGNGQDLRTGILTVDEISNQ 538
		
		
	172#JEONG1266_00920	INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signat...	240	2e-78
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)
		           signature.
		          Length = 372
		
		 Score =  240 bits (613), Expect = 2e-78
		 Identities = 128/321 (39%), Positives = 195/321 (60%)
		
		Query: 14  AREVSRLEDIITEDNEDIEAEMPKMRDDPAGKEARFLQATDEMSAALTQFMKKKIYEEQL 73
		           +R+ S  +     D +  E +       P  +  +F+Q+TDEMSAAL QF  ++ YE++ 
		Sbjct: 16  SRQASHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKS 75
		
		Query: 74  ANFLDGEEYVLEDQPIEKTDKVMEALKAATTHDYEVYSFAKKLFPDESDLVVVLRAILRK 133
		           +N  +  E VLED+ + K  ++++ +        +    A+ LFPD SDLV+VLR +LR+
		Sbjct: 76  SNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFPDPSDLVLVLRELLRR 135
		
		Query: 134 KQISENVRLNAEALLRKVNQETTKKFINSGINSALKAKLFGQALSLNPKLLRASYRQFLM 193
		           K + E VR   E+LL+ V ++T  K + +GIN ALKA+LFG+ LSL P LLRASYRQF+ 
		Sbjct: 136 KDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLSLKPGLLRASYRQFIQ 195
		
		Query: 194 AEDDAVDTYVEWIGSYGYQNRMLVTKFIKETLFSDINALDASCSSLEFGMFLNKLSQLLS 253
		           +E   V+ Y +WI SYGYQ R++V  FI+ +L +DI+A DASCS LEFG  L +L+QL  
		Sbjct: 196 SESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKM 255
		
		Query: 254 LQSAEALFLKTLMNNPIIKKFISAEDYWIFFLISLIKFPETAEELLNNALVTLPADANYK 313
		           L+SA+ LF+ TL++    K F + E  W+  ++SL++ P   + LL + +       ++K
		Sbjct: 256 LRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHK 315
		
		Query: 314 DKTLLLKAIYSGCTNLPFSLF 334
		           +    L+  Y  C  +P SLF
		Sbjct: 316 EHASFLQIFYQVCKAIPSSLF 336
		
		
	173#JEONG1266_00925	VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.	31	0.019
		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.
		          Length = 1291
		
		 Score = 31.2 bits (70), Expect = 0.019
		 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
		
		Query: 597 EIEDRIRDGVRPTAGGTFLNLDASEAEMILDNFKLAL---SGINIPIKDIILLGSVDIRR 653
		           EI +R+  G    A  T L L ASE     +N +++L   + +N+    + L+G+V + R
		Sbjct: 202 EINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGR 261
		
		
	175#JEONG1266_00935	SSPAMPROTEIN#Salmonella surface presentation of antigen gene typ...	43	7e-08
		>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M
		           signature.
		          Length = 147
		
		 Score = 42.8 bits (100), Expect = 7e-08
		 Identities = 41/142 (28%), Positives = 74/142 (52%)
		
		Query: 2   LSKVNRLIRRTAQSLAACEASLQKLNAEKEKLAEKERLYDMQLKNLQSLLDMKELLGEVV 61
		           L+++  L RR     + CE+ L +   E  +L  +E     Q+  L+ LLD        +
		Sbjct: 4   LTRIKVLQRRCTVFHSQCESILLRYQDEDRRLQVEEEAIVEQIAGLKLLLDTLRAENRQL 63
		
		Query: 62  FRQDIFYSLRKVTVIQQQIAEINLEKQKIAERRKILNKEIVQQQAQRKHWWLKGEKYDRL 121
		            R++I+  LRK +++++QI ++ L+  +I E+R  L K+  + Q + K+W  K   Y R 
		Sbjct: 64  SREEIYALLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQEKSKYWLRKEGNYQRW 123
		
		Query: 122 KKRIKKQLLNQMLYQDELEQEE 143
		             R K+  + + + Q+E E EE
		Sbjct: 124 IIRQKRLYIQREIQQEEAESEE 145
		
		
	177#JEONG1266_00945	SSPANPROTEIN#Salmonella invasion protein InvJ signature.	49	5e-10
		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.
		          Length = 336
		
		 Score = 48.6 bits (115), Expect = 5e-10
		 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
		
		Query: 31  ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDVTAQRWVLTEQDE 89
		           ++ LTY+FQRWG +++V I     G   L PS+T V  RLH+   N    QRW LT +D+
		Sbjct: 260 DSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDD 317
		
		Query: 90  RQGQRHQPHEEQENE 104
		           +Q  + Q H +Q  E
		Sbjct: 318 QQNPQQQQHRQQSGE 332
		
		
	178#JEONG1266_00950	TYPE3OMOPROT#Type III secretion system outer membrane O protein ...	156	1e-47
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein
		           family signature.
		          Length = 303
		
		 Score =  156 bits (395), Expect = 1e-47
		 Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 13/292 (4%)
		
		Query: 35  KENGEDVALLMPEFSAKWLPIAEESGSWSGWVLLREIFPLISAELAGMALMPETERLIGE 94
		           + +G +  L  P     W+ +++    WS W+   +    +S  LAG A+    E L+  
		Sbjct: 23  QRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVP 82
		
		Query: 95  WLSLSSSPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNLWLDKVTVCQYENA 154
		           WL+ +  P  L  P L   RLCV     G   P   L+ I +    LW + +        
		Sbjct: 83  WLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGG 142
		
		Query: 155 PTLDKKSLYWPIHFVIGFSKTCYRTIVDIEVGDVLLISNNMAYAVIYNTKICDLIYPEEL 214
		                K L WP+ FVIG S T    +  I +GDVLLI  + A            +Y    
		Sbjct: 143 GRP--KMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTSRA-----------EVYCYAK 189
		
		Query: 215 KMADHFQYEEDFETDDFDIKKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEID 274
		           K+    + E     +  DI+  E E       + +    +LPVK+EFVL +K + L E++
		Sbjct: 190 KLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELE 249
		
		Query: 275 ELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGHNN 326
		            +  ++++SL   +E N+EI  NG L G GELV+++D LGVEIH WLS   N
		Sbjct: 250 AMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESGN 301
		
		
	179#JEONG1266_00955	TYPE3IMPPROT#Type III secretion system inner membrane P protein ...	226	2e-77
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein
		           family signature.
		          Length = 224
		
		 Score =  226 bits (577), Expect = 2e-77
		 Identities = 151/223 (67%), Positives = 181/223 (81%), Gaps = 5/223 (2%)
		
		Query: 1   MSNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLS 60
		           M N ISLIA+L+  TLLPFIIASGTCF+KFSIVFV+VRNALGLQQ+PSNMTLNGVALLLS
		Sbjct: 1   MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60
		
		Query: 61  MFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120
		           MFVM P+  + Y   ++E+++FN+++S+   V+ G+ GY+ YLIKYS+ ELV FFE  Q 
		Sbjct: 61  MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120
		
		Query: 121 VNSSEDNEEIIDDD-----NISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVL 175
		                +  E +  D       SIF+LLPAYALSEIKSAF IGFY+YLPFVVVDLV+SSVL
		Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180
		
		Query: 176 LTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLS 218
		           L LGMMMMSPVTISTPIKL+LFVA+DGWT+LSKGLILQY D++
		Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIA 223
		
		
	180#JEONG1266_00960	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	79	4e-23
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 78.7 bits (194), Expect = 4e-23
		 Identities = 59/86 (68%), Positives = 73/86 (84%)
		
		Query: 1  MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF 60
		          MDD+VFAGN+ALYL+L++S  P  VAT +GLLVGLFQTVTQLQEQTLPFG+KLL V +C 
		Sbjct: 1  MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60
		
		Query: 61 FLMSGWYGEKLYSFGIEMLNLAFARG 86
		          FL+SGWYGE L S+G +++ LA A+G
		Sbjct: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86
		
		
	181#JEONG1266_00970	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	310	e-106
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score =  310 bits (796), Expect = e-106
		 Identities = 112/340 (32%), Positives = 185/340 (54%), Gaps = 5/340 (1%)
		
		Query: 2   ANKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVG--TLYLGYVFDVHHIMSILEYILD 59
		             KTE+PT KK++DA KKGQ+ KS+++  + +++     L     +   H   ++    +
		Sbjct: 3   GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62
		
		Query: 60  HNAKPDIWD---YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFDSL 116
		            +  P           + + +     P L V     I     Q    ++ EA+K     +
		Sbjct: 63  QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122
		
		Query: 117 NPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDWGE 176
		           NP+ G KRIF +K++ EF+K+IL ++  ++ I +    +   L +     I  +    G+
		Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182
		
		Query: 177 MLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERH 236
		           +L  L++ C    +++ I D+  EY+ ++K++KM K E+KREYKE EG+PEIKSKRR+ H
		Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242
		
		Query: 237 QEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEI 296
		           QEI S  ++ +V  S +++ANPTHIAIGI +K   +P+PL++ + T+     VRK A+E 
		Sbjct: 243 QEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEE 302
		
		Query: 297 GIPIITDKKLARKIYATHRRYDYVSFENIDEILRLLLWLE 336
		           G+PI+    LAR +Y       Y+  E I+    +L WLE
		Sbjct: 303 GVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
		
		
	186#JEONG1266_01000	FLGMRINGFLIF#Flagellar M-ring protein signature.	35	3e-04
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 34.6 bits (79), Expect = 3e-04
		 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
		
		Query: 4   ISLLLFILLLCGCKQQE-LLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTD 62
		           +++++ ++L         L ++L  Q    ++A L + NI     +       I V    
		Sbjct: 35  VAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA---IEVPADK 91
		
		Query: 63  FASAVDWLKIYNLPGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIV 122
		                  L    LP    +    +   +    S  +E+     A+E  L ++++ +  + 
		Sbjct: 92  VHELRLRLAQQGLPKGGAVGFE-LLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVK 150
		
		Query: 123 SSRVHV 128
		           S+RVH+
		Sbjct: 151 SARVHL 156
		
		
	195#JEONG1266_01040	SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD cha...	75	1e-19
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD
		           chaperone signature.
		          Length = 168
		
		 Score = 75.0 bits (184), Expect = 1e-19
		 Identities = 25/143 (17%), Positives = 58/143 (40%), Gaps = 5/143 (3%)
		
		Query: 22  ALSKGENLALLHGLTPDILDRIYAYAFDYHEKGNVTDAEIYYKLLCIYAFENHEYLKGFA 81
		            L  G  +A+L+ ++ D L+++Y+ AF+ ++ G   DA   ++ LC+    +  +  G  
		Sbjct: 18  FLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLG 77
		
		Query: 82  SVCQSKKKYQQAYDLYKLSYNYSPYDDYSVIYRMGQCQIGAKNIDNAMQCFYH----IIN 137
		           +  Q+  +Y  A   Y          +    +   +C +    +  A    +     I +
		Sbjct: 78  ACRQAMGQYDLAIHSYSYGAIMDI-KEPRFPFHAAECLLQKGELAEAESGLFLAQELIAD 136
		
		Query: 138 NCEDASVKSKAQAYIELLTDNSE 160
		             E   + ++  + +E +    E
		Sbjct: 137 KTEFKELSTRVSSMLEAIKLKKE 159
		
		
JEONG1266_01420	JEONG1266_01505	Y	Y	N	JEONG1266_01345	JEONG1266_01550
	JEONG1266_01420	-1	20	-3.066254	phosphopyruvate hydratase
	JEONG1266_01425	-1	20	-3.759635	hypothetical protein
	JEONG1266_01430	-1	20	-3.995461	hypothetical protein
	JEONG1266_01440	0	15	-3.546859	hypothetical protein
	JEONG1266_01445	-1	11	-2.660177	hypothetical protein
	JEONG1266_01450	-1	10	-1.059811	7-carboxy-7-deazaguanine synthase QueE
	JEONG1266_01455	-1	9	-0.560878	sugar kinase
	JEONG1266_01460	0	10	0.232732	hypothetical protein
	JEONG1266_01465	0	11	0.696444	oxidoreductase
	JEONG1266_01470	1	14	1.051820	FAD-linked oxidoreductase
	JEONG1266_01475	4	19	1.866198	electron transfer flavoprotein
	JEONG1266_01480	1	18	2.154621	electron transfer flavoprotein
	JEONG1266_01485	-1	19	1.087175	electron transporter
	JEONG1266_01490	1	15	2.278312	hypothetical protein
	JEONG1266_01495	0	15	3.062833	ferredoxin
	JEONG1266_01500	0	17	3.359179	FAD-dependent oxidoreductase
	JEONG1266_01505	0	17	3.082066	6-carboxytetrahydropterin synthase QueD
	268#JEONG1266_01425	ANTHRAXTOXNA#Anthrax toxin LF subunit signature.	29	0.038
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.
		          Length = 800
		
		 Score = 29.3 bits (65), Expect = 0.038
		 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
		
		Query: 211 GYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLA-----GEGN 265
		              P L  N +  A+ +E  K   YE+GK I+L +         +   ++       + +
		Sbjct: 147 RETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSS 206
		
		Query: 266 KAFTSEEFTHFLEELTKQYPIVSIEDGLDESDW---DGFAYQTKVLG-DKIQLVGDDLFV 321
		               S++F   LE   K   I  I++ L E        F+Y         ++L   D+F 
		Sbjct: 207 DLLFSQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFE 266
		
		Query: 322 TNTKILKEGIEK 333
		              K+ K G EK
		Sbjct: 267 YMNKLEKGGFEK 278
		
		
	269#JEONG1266_01430	cloacin#Cloacin signature.	36	1e-04
		>cloacin#Cloacin signature.
		          Length = 551
		
		 Score = 36.2 bits (83), Expect = 1e-04
		 Identities = 17/31 (54%), Positives = 18/31 (58%)
		
		Query: 266 GSSSSSSGGGSSGGGSGGGFSGGGGSSGGGG 296
		           GS S    GG SG G+GGG    GG SG GG
		Sbjct: 49  GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79
		
		
		
		 Score = 36.2 bits (83), Expect = 1e-04
		 Identities = 14/33 (42%), Positives = 17/33 (51%)
		
		Query: 266 GSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           GS     GG   G G G G SGGG  +GG  ++
		Sbjct: 51  GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
		
		
		
		 Score = 35.5 bits (81), Expect = 2e-04
		 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
		
		Query: 266 GSSSSSSGGGSS-----GGGSGGGFSGGGGSSGGGGASG 299
		            S ++  GGGS      GGGSG G  GG G+SGGG  +G
		Sbjct: 40  SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78
		
		
		
		 Score = 30.8 bits (69), Expect = 0.007
		 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
		
		Query: 266 GSSSSSSGGGSS----GGGSGGGFSGGGGSSGGGGASG 299
		           G +S  SG  S     GGGSG G   GGGS  G G   
		Sbjct: 31  GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68
		
		
		
		 Score = 29.7 bits (66), Expect = 0.016
		 Identities = 13/35 (37%), Positives = 18/35 (51%)
		
		Query: 264 RKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           R  ++ + S  G+  GG  G   GGG S G G +S
		Sbjct: 7   RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS 41
		
		
		
		 Score = 28.1 bits (62), Expect = 0.048
		 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
		
		Query: 272 SGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           SG G+ GG    G  GG G+ G   A 
		Sbjct: 60  SGHGNGGGNGNSG--GGSGTGGNLSAV 84
		
		
	272#JEONG1266_01445	56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein sign...	27	0.047
		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein
		           signature.
		          Length = 533
		
		 Score = 27.2 bits (60), Expect = 0.047
		 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
		
		Query: 36  NASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDE 95
		           +AS  ++ ++ Q   D +  L  S  GY            +  +  N+   +    P  +
		Sbjct: 294 SASIEQIQSKIQELGDTLEELRDSFDGY------------INNAFVNQIHLNFVMPPQAQ 341
		
		Query: 96  QKLQAWQQAQAQVT 109
		           Q+    QQ QAQ T
		Sbjct: 342 QQQGQGQQQQAQAT 355
		
		
	275#JEONG1266_01460	TCRTETA#Tetracycline resistance protein signature.	29	0.029
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 29.4 bits (66), Expect = 0.029
		 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
		
		Query: 48  GLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVA 107
		           G++++ + +         G ++D+F  R ++  ++    +   +MAT P LWV+   ++ 
		Sbjct: 46  GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105
		
		Query: 108 FAITTILMLWSVSIKAASLLGD---HSEQGKIMGWMEGLRGVG 147
		             IT      +    A + + D     E+ +  G+M    G G
		Sbjct: 106 AGITG-----ATGAVAGAYIADITDGDERARHFGFMSACFGFG 143
		
		
	276#JEONG1266_01465	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	104	4e-29
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  104 bits (261), Expect = 4e-29
		 Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 11/257 (4%)
		
		Query: 11  MDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEN-QGVEVD 69
		           M+   ++GK A +TG   G+G+A A  LA  GA++    +  +  E        +    +
		Sbjct: 1   MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60
		
		Query: 70  FMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAA 129
		               D+    A  +I A      G +DILVN AG+ +   +      +W+    VN T  
		Sbjct: 61  AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120
		
		Query: 130 FELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNI 189
		           F  S   +K M+ ++SG I+ + S  + +      AY+++K A   FTK    EL +YNI
		Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180
		
		Query: 190 QVNGIAPGYYATDI--TLATRSNPETNQRVLDH-------IPANRWGDTQDLMGAAVFLA 240
		           + N ++PG   TD+  +L    N    Q +          IP  +     D+  A +FL 
		Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAE-QVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239
		
		Query: 241 SQASNYVNGHLLVVDGG 257
		           S  + ++  H L VDGG
		Sbjct: 240 SGQAGHITMHNLCVDGG 256
		
		
JEONG1266_01630	JEONG1266_01790	Y	Y	N	JEONG1266_01555	JEONG1266_01750
	JEONG1266_01630	-3	14	3.042865	lipoprotein NlpD
	JEONG1266_01635	-1	13	1.638285	RNA polymerase sigma factor RpoS
	JEONG1266_01640	-1	16	3.301375	transcriptional regulator
	JEONG1266_01645	0	18	3.260318	phenolic acid decarboxylase
	JEONG1266_01650	-1	16	2.337239	phenolic acid decarboxylase
	JEONG1266_01655	-1	14	2.114048	hypothetical protein
	JEONG1266_01660	-2	15	2.426271	serine/threonine protein phosphatase
	JEONG1266_01665	-2	17	3.509471	DNA mismatch repair protein MutS
	JEONG1266_01670	-1	17	2.888132	hypothetical protein
	JEONG1266_01675	0	17	3.021822	transcriptional regulator FhlA
	JEONG1266_01680	1	21	3.706084	hydrogenase expression/formation protein HypE
	JEONG1266_01685	2	20	2.517665	hydrogenase formation protein HypD
	JEONG1266_01690	2	22	2.330534	hydrogenase assembly chaperone
	JEONG1266_01695	2	20	3.911640	hydrogenase accessory protein HypB
	JEONG1266_01700	2	20	4.507582	hydrogenase nickel insertion protein HypA
	JEONG1266_01705	0	24	4.824759	transcriptional regulator
	JEONG1266_01710	0	25	5.303371	hypothetical protein
	JEONG1266_01715	-1	27	5.650552	formate hydrogenlyase
	JEONG1266_01720	-1	27	5.406660	formate hydrogenlyase subunit 3
	JEONG1266_01725	-1	29	4.784633	hydrogenase 3 membrane subunit
	JEONG1266_01730	-1	25	3.393784	hydrogenase 3 large subunit
	JEONG1266_01735	-1	23	3.303002	formate hydrogenlyase complex iron-sulfur
	JEONG1266_01740	-1	20	2.769296	formate hydrogenlyase
	JEONG1266_01745	-2	18	2.209399	formate hydrogenlyase maturation protein HycH
	JEONG1266_01750	0	16	3.486163	hydrogenase maturation peptidase HycI
	JEONG1266_01755	1	16	3.425784	6-phospho-beta-glucosidase
	JEONG1266_01760	0	17	3.652747	PTS cellobiose/arbutin/salicin transporter
	JEONG1266_01765	1	18	3.862739	transcriptional regulator
	JEONG1266_01770	1	17	4.423279	formate dehydrogenase
	JEONG1266_01775	1	16	3.895818	carbamoyltransferase HypF
	JEONG1266_01780	1	17	3.073232	NADH:flavorubredoxin oxidoreductase
	JEONG1266_01785	1	15	2.820840	nitric oxide reductase
	JEONG1266_01790	1	18	3.164850	nitric oxide reductase transcription regulator
	308#JEONG1266_01630	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	31	0.011
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 30.6 bits (69), Expect = 0.011
		 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
		
		Query: 276 IIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 335
		           I+ATA+G++ ++G +         IK      ++      ++V+E + V+ G  +  + +
		Sbjct: 82  IVATANGKLTHSGRSK-------EIKP---IENSIV--KEIIVKEGESVRKGDVLLKLTA 129
		
		Query: 336 TGTSSTRLHFEIRYKGKSVNPLRY 359
		            G  +  L  +       +   RY
		Sbjct: 130 LGAEADTLKTQSSLLQARLEQTRY 153
		
		
	317#JEONG1266_01675	HTHFIS#FIS bacterial regulatory protein HTH signature.	389	e-131
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score =  389 bits (1000), Expect = e-131
		 Identities = 140/373 (37%), Positives = 203/373 (54%), Gaps = 39/373 (10%)
		
		Query: 350 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILG 409
		             E+  +  R + E      +L +   +   ++GRS AM  + + +  + Q+D T++I G
		Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITG 167
		
		Query: 410 ETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 469
		           E+GTGKEL+ARA+H+   R N   V +N AA+P  L+ES+LFGHE+GAFTGA  +  GRF
		Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRF 227
		
		Query: 470 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 529
		           E A+  +LFLDE+GDMP++ Q +LLRVLQ+ E+  +G    I++DVR++AATN+DLK+ +
		Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSI 287
		
		Query: 530 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTL 589
		               FR DLYYRLNV P+ LPPLR+R EDIP L + F  + A + G ++     E L  +
		Sbjct: 288 NQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFV-QQAEKEGLDVKRFDQEALELM 346
		
		Query: 590 SNMEWPGNVRELENVIERAVLLTRGNVLQLSL---------------------PDIALPE 628
		               WPGNVRELEN++ R   L   +V+   +                       +++ +
		Sbjct: 347 KAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQ 406
		
		Query: 629 PETPPAATVVAQEG--------------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR 674
		                     A  G              E EY LI+  L  T G       AA  LGL R
		Sbjct: 407 AVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI---KAADLLGLNR 463
		
		Query: 675 TTLLSRMKRLGID 687
		            TL  +++ LG+ 
		Sbjct: 464 NTLRKKIRELGVS 476
		
		
	320#JEONG1266_01690	TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.	27	0.012
		>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.
		          Length = 1147
		
		 Score = 27.0 bits (59), Expect = 0.012
		 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
		
		Query: 12  IDGNQAKVD--VCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINEAEARDTLD 69
		           I GNQ + D    G+  D  L      ++NG+P  G W+ + + F   + ++ ++ D  +
		Sbjct: 171 IIGNQIRTDQKFMGV-FDESLKERQEAEKNGEPTGGDWLDIFLSF---IFDKKQSSDVKE 226
		
		Query: 70  ALQN--MFDVEPDVG 82
		           A+    +  V+PD+ 
		Sbjct: 227 AINQEPVPHVQPDIA 241
		
		
	335#JEONG1266_01765	HTHTETR#TetR bacterial regulatory protein HTH signature.	28	0.035
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 28.4 bits (63), Expect = 0.035
		 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
		
		Query: 2   TTMLEVAKRAGVSKATVSRVLSG-----NGYVSQETKDRVFQAVEESGYRPNLLARNLSA 56
		           T++ E+AK AGV++  +           +        +     +E     P      L  
		Sbjct: 32  TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91
		
		Query: 57  KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE 89
		                L   VT      +   E++FH      E
		Sbjct: 92  ILIHVLESTVTEERRRLLM--EIIFHKCEFVGE 122
		
		
	340#JEONG1266_01790	HTHFIS#FIS bacterial regulatory protein HTH signature.	373	e-127
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score =  373 bits (960), Expect = e-127
		 Identities = 125/388 (32%), Positives = 195/388 (50%), Gaps = 33/388 (8%)
		
		Query: 149 IAALAAGALS----------NALLIEQLESQNMLPGDAAPFEAVKQTQMIGLSPGMTQLK 198
		           I A   GA               +I +  ++          ++     ++G S  M ++ 
		Sbjct: 91  IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150
		
		Query: 199 KEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFG 258
		           + +  +  +DL ++I+GE+GTGKELVA+A+H+   R   P V +N AA+P  + ESELFG
		Sbjct: 151 RVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFG 210
		
		Query: 259 HVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLR 318
		           H KGAFTGA +  +G+FE A+ GTLFLDEIG++ +  Q +LLRVLQ G+   VG    +R
		Sbjct: 211 HEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIR 270
		
		Query: 319 VDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRL 378
		            DVR++AATN+DL++ +  G FR DL++RL+V PL +PPLR+R +D+  L  +F +Q   
		Sbjct: 271 SDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE- 329
		
		Query: 379 RQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVIL-----EAQH 433
		           ++GL        A  L++ + +PGNVRELE+ + R   L        E+I      E   
		Sbjct: 330 KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPD 389
		
		Query: 434 FAFPEVTLPPPEVAAVPVVKQNLR-----------------EATEAFQRETIRQALAQNH 476
		               +       ++    V++N+R                       +   I  AL    
		Sbjct: 390 SPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATR 449
		
		Query: 477 HNWAACARMLETDVANLHRLAKRLGLKD 504
		            N    A +L  +   L +  + LG+  
		Sbjct: 450 GNQIKAADLLGLNRNTLRKKIRELGVSV 477
		
		
JEONG1266_02005	JEONG1266_02260	Y	Y	Y	JEONG1266_01930	JEONG1266_02130
	JEONG1266_02005	2	16	-0.893622	hypothetical protein
	JEONG1266_02010	1	18	2.025967	transcriptional regulator
	JEONG1266_02015	2	20	3.075664	hypothetical protein
	JEONG1266_02020	2	21	3.750434	peptidoglycan-binding protein LysM
	JEONG1266_02025	1	21	3.923037	transcriptional regulator
	JEONG1266_02030	2	16	1.739297	GABA permease
	JEONG1266_02035	1	12	-0.471584	4-aminobutyrate transaminase
	JEONG1266_02040	1	13	-2.301843	succinate-semialdehyde dehydrogenase I
	JEONG1266_02045	0	22	-7.496610	hydroxyglutarate oxidase
	JEONG1266_02050	1	24	-6.650994	carbon starvation induced protein
	JEONG1266_02055	2	29	-7.736058	alpha amylase
	JEONG1266_02060	2	29	-7.066965	alpha-amylase
	JEONG1266_02070	3	31	-7.660108	*hypothetical protein
	JEONG1266_02075	3	32	-9.432045	hypothetical protein
	JEONG1266_02080	3	34	-10.185257	autotransporter outer membrane beta-barrel
	JEONG1266_02085	10	51	-17.209908	hypothetical protein
	JEONG1266_02090	10	53	-18.751011	dipicolinate synthase
	JEONG1266_02095	11	55	-18.318382	recombinase
	JEONG1266_02100	9	52	-17.874079	integrase
	JEONG1266_02105	7	51	-15.180752	DNA-binding protein
	JEONG1266_02110	7	48	-12.594776	hypothetical protein
	JEONG1266_02115	6	44	-10.979004	hypothetical protein
	JEONG1266_02120	4	38	-9.513202	hypothetical protein
	JEONG1266_02125	1	33	-5.974630	hypothetical protein
	JEONG1266_02130	1	36	-7.408970	DNA-binding protein
	JEONG1266_02135	-1	23	-3.706173	endonuclease
	JEONG1266_02140	-1	21	-2.408683	protein ninG
	JEONG1266_02145	1	22	-2.179445	serine/threonine protein phosphatase
	JEONG1266_02150	2	24	-1.059625	antitermination protein
	JEONG1266_02155	2	24	-1.005705	hypothetical protein
	JEONG1266_02160	3	23	2.775543	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_02165	3	26	2.784059	holin
	JEONG1266_02170	2	22	2.709777	hypothetical protein
	JEONG1266_02175	2	21	3.660699	lysozyme
	JEONG1266_02180	3	24	3.454722	transposase
	JEONG1266_02185	2	24	3.644487	isocitrate lyase
	JEONG1266_02190	3	23	0.238214	transposase
	JEONG1266_28125	3	29	-6.106966	transposase
	JEONG1266_28130	5	43	-9.761580	phage tail protein
	JEONG1266_02210	7	47	-11.707936	phage tail protein
	JEONG1266_02215	7	48	-12.075530	T3SS effector NleG
	JEONG1266_02220	7	49	-12.761007	type III effector
	JEONG1266_02225	3	40	-10.820580	T3SS effector protein NleG8
	JEONG1266_02230	3	30	-7.435151	bfpT-regulated chaperone
	JEONG1266_02235	1	23	-5.679248	damage-inducible protein DinI
	JEONG1266_02240	1	18	-2.840076	SsrA-binding protein
	JEONG1266_02245	2	16	-1.047443	ubiquinone-binding protein
	JEONG1266_02255	1	14	-0.778822	RnfH family protein
	JEONG1266_02260	2	15	-0.881693	membrane biogenesis protein
	390#JEONG1266_02080	PRTACTNFAMLY#Pertactin virulence factor family signature.	230	3e-64
		>PRTACTNFAMLY#Pertactin virulence factor family signature.
		          Length = 910
		
		 Score =  230 bits (587), Expect = 3e-64
		 Identities = 216/888 (24%), Positives = 347/888 (39%), Gaps = 95/888 (10%)
		
		Query: 629  NDGGTLDVREKGSATGIQQSSQGAL-VATTRATRVTGTRADGVAFSIEQGAANNILLANG 687
		            N+   +   E+     IQ S  G +  A+    +V+G +A G+     +  A  +   NG
		Sbjct: 37   NNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILL---ENPAAELQFRNG 93
		
		Query: 688  GVLT----VESDTSSDKTQVNTGGREIVKTKATATGTTLTGGEQ----IVEGVANETTIN 739
		             V +     +         V     ++V   AT      T  +      V G   + +I 
		Sbjct: 94   SVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIA 153
		
		Query: 740  DGGIQTVS-------ANGEAIKTTINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEI 792
		            D  +Q          AN    ++ I +GG           + +  S   L+ +    +  
		Sbjct: 154  DSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPA 213
		
		Query: 793  SGTHQY------------GTFSISGNLATNMLLENGGNLLVLAGTEARDSTVG------- 833
		            SG                G     G  A    ++     L  A     D+  G       
		Sbjct: 214  SGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGA 273
		
		Query: 834  -KGGAMQNQGQDSATKVNSGGQYTL---GRSKDEFQALARAEDLQVA-----GGTAIVYA 884
		              GGA+              G Y +   G S +  Q++  A +L  A     G    V  
		Sbjct: 274  VPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSG 333
		
		Query: 885  GTLA--DASVSGATGSLSLMTPRDNVTPVKLEGAIRITDSATLTIGNGVDTTLADLTAA- 941
		            G+L+    +V    G+     P+     + L+        A L         L     A 
		Sbjct: 334  GSLSAPHGNVIETGGARRFA-PQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGAD 392
		
		Query: 942  SRGSVWLNSNNSCAGTSNCEYR---------------VNSLLLNDGNVYLSAQTA----- 981
		            ++G +      S  GTS                    V+SL +++    ++  +      
		Sbjct: 393  AQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALR 452
		
		Query: 982  ---------APATTNGIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFV 1032
		                           G +  LT N L+GSG F ++        D+LVV  +A+G  +++V
		Sbjct: 453  LASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWV 512
		
		Query: 1033 QDTGVSPQSDDAMTLVKT-GGGDASFSLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKP 1091
		            +++G  P S + + LV+T  G  A+F+L N  G VD+GTY Y L ++GN  W+L     P
		Sbjct: 513  RNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAP 572
		
		Query: 1092 NPDPNPNPNPNPKPDPKPDPKPDPKPDPTPE-PTPTPVPEKRITPSTAAVLNMA--ATLP 1148
		                     P PKP P+P P+P   P P PE P P P   + ++ +  A +N        
		Sbjct: 573  ---------PAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLAS 623
		
		Query: 1149 LVFDAELNSIRERLNIMKASPHNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSPN 1208
		             ++ AE N++ +RL  ++ +P     WG  +  R  +   AG  F+Q + G  +G D   
		Sbjct: 624  TLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAV 683
		
		Query: 1209 DIPEGIATLGAFMGYSHSHIGFDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFES 1268
		             +  G   LG   GY+    GF   G G   S  +GGYA++  +SGFYLD  ++ +R E+
		Sbjct: 684  AVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLEN 743
		
		Query: 1269 NVAGKMSSGGAANGSYHSNGLGGHIETGMRFT-DGNWNLTPYASLTGFTADNPEYHLSNG 1327
		            +     S G A  G Y ++G+G  +E G RFT    W L P A L  F A    Y  +NG
		Sbjct: 744  DFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANG 803
		
		Query: 1328 MESKSVDTRSIYRELGATLSYNMRLGNGMEIEPWLKAAVRKEFVDDNRVKVNNDGNFVND 1387
		            +  +     S+   LG  +   + L  G +++P++KA+V +EF     V  N   +   +
		Sbjct: 804  LRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAH-RTE 862
		
		Query: 1388 LSGRRGIYQAGIKASFSSTLSGHLGVGYSHGAGVESPWNAVAGVNWSF 1435
		            L G R     G+ A+     S +    YS G  +  PW   AG  +S+
		Sbjct: 863  LRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
		
		
	398#JEONG1266_02120	TONBPROTEIN#Gram-negative bacterial tonB protein signature.	63	1e-13
		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.
		          Length = 239
		
		 Score = 63.5 bits (154), Expect = 1e-13
		 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
		
		Query: 338 SPLPEPEPEPEPEPEPEP-EPEPEPEPEPEPEPE-PEPEPEPEPEPEPEPEPEPEPEPEP 395
		           +P     P+    P     EPEPEPEP PEP  E P    +P+P+P+P+P+P  + + +P
		Sbjct: 51  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110
		
		Query: 396 IR 397
		            R
		Sbjct: 111 KR 112
		
		
		
		 Score = 62.7 bits (152), Expect = 3e-13
		 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
		
		Query: 330 IETSLDFSSPLPEPEPEPEPEPEPEPEP-EPEPEPEPEPEPEPE-PEPEPEPEPEPEPEP 387
		               +  +   P     P+    P     EPEPEPEP PEP  E P    +P+P+P+P+P
		Sbjct: 41  PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 100
		
		Query: 388 EPEPEPE 394
		           +P  + +
		Sbjct: 101 KPVKKVQ 107
		
		
		
		 Score = 61.9 bits (150), Expect = 4e-13
		 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
		
		Query: 341 PEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIR 397
		           P PEP  EPEPEPEP PEP  E P    +P+P+P+P+P+P  + + +P+ + +P   R
		Sbjct: 63  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
		
		
		
		 Score = 61.9 bits (150), Expect = 5e-13
		 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
		
		Query: 339 PLPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIR 397
		           P PEP  EPEPEPEP PEP  E P    +P+P+P+P+P+P  + + +P+ + +P      
		Sbjct: 63  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 122
		
		Query: 398 SSLKEN 403
		           S  +  
		Sbjct: 123 SPFENT 128
		
		
		
		 Score = 43.8 bits (103), Expect = 5e-07
		 Identities = 12/60 (20%), Positives = 26/60 (43%)
		
		Query: 339 PLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIRS 398
		             P+  P    +P+P+P+P+P+P  + + +P+ + +P       P     P        +
		Sbjct: 80  EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 139
		
		
		
		 Score = 41.5 bits (97), Expect = 3e-06
		 Identities = 14/66 (21%), Positives = 28/66 (42%)
		
		Query: 339 PLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIRS 398
		           P   P    +P+P+P+P+P+P  + + +P+ + +P       P     P          +
		Sbjct: 82  PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 141
		
		Query: 399 SLKENT 404
		           + K  T
		Sbjct: 142 TSKPVT 147
		
		
		
		 Score = 38.0 bits (88), Expect = 3e-05
		 Identities = 11/67 (16%), Positives = 26/67 (38%)
		
		Query: 339 PLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIRS 398
		           P+   +P+P+P+P+P+P  + + +P+ + +P       P     P             + 
		Sbjct: 86  PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 145
		
		Query: 399 SLKENTE 405
		                + 
		Sbjct: 146 VTSVASG 152
		
		
		
		 Score = 32.7 bits (74), Expect = 0.002
		 Identities = 10/65 (15%), Positives = 22/65 (33%)
		
		Query: 339 PLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIRS 398
		             P+P+P+P+P+P  + + +P+ + +P       P     P                   
		Sbjct: 90  EKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 149
		
		Query: 399 SLKEN 403
		           +    
		Sbjct: 150 ASGPR 154
		
		
	402#JEONG1266_02140	TYPE4SSCAGX#Type IV secretion system CagX conjugation protein si...	29	0.014
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein
		           signature.
		          Length = 522
		
		 Score = 29.0 bits (64), Expect = 0.014
		 Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
		
		Query: 27  EICGTKIALERRSKEREKAEKAEKAAEKKRRREEQKQKDKLKIQKL 72
		           E+   K ALE+  + +E+A+KA+K  +K+ +R+E++ K++  ++ L
		Sbjct: 140 ELEEQKKALEKEKEAKEQAQKAQK--DKREKRKEERAKNRANLENL 183
		
		
	424#JEONG1266_02270	BLACTAMASEA#Beta-lactamase class A signature.	26	0.032
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 26.3 bits (58), Expect = 0.032
		 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
		
		Query: 4   KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRV--GMTQQQVAYALGT 61
		           K +    AVL  + AG   LER ++     Q + +  + VS+  +  GMT  ++  A   
		Sbjct: 69  KVV-LCGAVLARVDAGDEQLERKIH---YRQQDLVDYSPVSEKHLADGMTVGELCAA--A 122
		
		Query: 62  PLMSDPFGTNTWFYVFRQQPGHEGVTQ 88
		             MSD    N    +     G  G+T 
		Sbjct: 123 ITMSDNSAANL---LLATVGGPAGLTA 146
		
		
JEONG1266_02700	JEONG1266_02725	Y	N	N	JEONG1266_02625	JEONG1266_02825
	JEONG1266_02700	2	31	1.597418	tRNA
	JEONG1266_02705	2	27	1.161022	Fe-S cluster assembly transcriptional regulator
	JEONG1266_02710	2	26	2.763276	cysteine desulfurase IscS
	JEONG1266_02715	2	26	2.721344	Fe-S cluster assembly scaffold IscU
	JEONG1266_02720	2	21	2.833213	iron-sulfur cluster assembly protein IscA
	JEONG1266_02725	0	19	3.773353	Fe-S protein assembly co-chaperone HscB
JEONG1266_02830	JEONG1266_02860	Y	Y	N	JEONG1266_02755	JEONG1266_02950
	JEONG1266_02830	2	23	1.433478	ribosome biogenesis GTPase Der
	JEONG1266_02835	2	24	1.218983	hypothetical protein
	JEONG1266_02840	2	24	1.265915	exodeoxyribonuclease VII large subunit
	JEONG1266_02845	2	30	0.298229	IMP dehydrogenase
	JEONG1266_02850	-2	14	-2.739409	glutamine-hydrolyzing GMP synthase
	JEONG1266_02855	-2	14	-3.692517	hypothetical protein
	JEONG1266_02860	-3	11	-3.459886	hypothetical protein
	535#JEONG1266_02855	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	28	0.024
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 28.1 bits (62), Expect = 0.024
		 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
		
		Query: 34   QQGKNEEQRQHDEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEATA 93
		            Q  +  ++ + +     +  E+ Q        Q    K  AT    +KA+ +  +     
		Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEV 1122
		
		Query: 94   DKKRDQSYEDELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANR 153
		             K   Q    + +S  +Q Q     + +  V      I +         D  Q   + + 
		Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVN-----IKEPQSQTNTTADTEQPAKETSS 1177
		
		Query: 154  NMTE 157
		            N+ +
		Sbjct: 1178 NVEQ 1181
		
		
JEONG1266_03090	JEONG1266_03155	Y	Y	N	JEONG1266_03015	JEONG1266_03210
	JEONG1266_03090	2	18	3.533154	malic enzyme
	JEONG1266_03095	2	21	4.331464	ethanolamine utilization protein EutS
	JEONG1266_03100	1	20	4.610725	ethanolamine utilization protein EutP
	JEONG1266_03105	3	21	5.496876	ethanolamine utilization protein EutQ
	JEONG1266_03110	2	19	6.066043	cobalamin adenosyltransferase
	JEONG1266_03115	4	20	6.352262	phosphate acetyltransferase
	JEONG1266_03120	2	21	5.692862	ethanolamine utilization protein EutM
	JEONG1266_03125	2	21	6.022051	ethanolamine utilization protein EutN
	JEONG1266_03130	1	23	5.819401	aldehyde dehydrogenase EutE
	JEONG1266_03135	0	23	5.745408	ethanolamine utilization protein EutJ
	JEONG1266_03140	-1	23	5.438769	ethanolamine utilization protein EutG
	JEONG1266_03145	-1	23	5.113242	ethanolamine utilization protein EutH
	JEONG1266_03150	-2	19	4.781752	reactivating factor for ethanolamine ammonia
	JEONG1266_03155	-2	17	3.789566	ethanolamine ammonia-lyase
	591#JEONG1266_03135	SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein s...	51	2e-09
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein
		           signature.
		          Length = 347
		
		 Score = 50.5 bits (121), Expect = 2e-09
		 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
		
		Query: 63  VRDGIVWDFFGAVTIVRRHLD-TLEQQFGRRFSHAATSFPPGTDP---RISINVLESAGL 118
		           ++DG++ DFF    +++  +       F R         P G      R      + AG 
		Sbjct: 76  MKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGA 135
		
		Query: 119 EVSHVLDEPTAVA---DLLQLDNAG--VVDIGGGTTGIAIVKKGKVTYSADEATGG 169
		               +++EP A A    L   +  G  VVDIGGGTT +A++    V YS+    GG
		Sbjct: 136 REVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGG 191
		
		
JEONG1266_03405	JEONG1266_04040	Y	Y	Y	JEONG1266_03295	JEONG1266_03525
	JEONG1266_03405	-1	13	3.069410	ion channel protein
	JEONG1266_03410	-1	16	3.496616	glucokinase
	JEONG1266_03415	0	16	3.814521	PTS fructose transporter subunit IIB
	JEONG1266_03420	0	17	3.214338	PTS fructose transporter subunit IIC
	JEONG1266_03425	0	19	2.527688	aminopeptidase
	JEONG1266_03430	0	19	2.308212	aminopeptidase
	JEONG1266_03435	0	17	1.502666	phosphoenolpyruvate--protein phosphotransferase
	JEONG1266_03440	0	15	0.162352	AraC family transcriptional regulator
	JEONG1266_03445	0	14	-0.156524	DNA-binding response regulator
	JEONG1266_03450	0	13	-0.250100	ECF transporter S component
	JEONG1266_03455	-2	15	-1.045788	alanine transaminase
	JEONG1266_03460	-1	23	-3.933445	lipid A biosynthesis palmitoleoyl
	JEONG1266_03465	1	30	-5.097589	hypothetical protein
	JEONG1266_03470	1	32	-5.399367	hypothetical protein
	JEONG1266_03475	1	33	-5.774726	hypothetical protein
	JEONG1266_03480	2	30	-5.314310	hypothetical protein
	JEONG1266_03485	0	32	-7.399359	formyl-CoA transferase
	JEONG1266_03490	0	33	-8.224928	oxalyl-CoA decarboxylase
	JEONG1266_03495	0	34	-9.299576	transporter YfdV
	JEONG1266_03500	-1	34	-9.729740	hypothetical protein
	JEONG1266_03505	-1	31	-8.299699	CoA:oxalate CoA-transferase
	JEONG1266_03510	-1	31	-8.493330	two-component system sensor histidine kinase
	JEONG1266_03515	-2	28	-5.805448	DNA-binding response regulator
	JEONG1266_03520	-1	24	-4.090614	multidrug export protein EmrA
	JEONG1266_03525	0	24	-2.394280	multidrug resistance protein B
	JEONG1266_03530	-1	20	-1.613195	D-serine ammonia-lyase
	JEONG1266_03535	0	24	-2.017087	hypothetical protein
	JEONG1266_03540	0	25	-2.258790	transcriptional regulator
	JEONG1266_03545	1	26	-3.038785	glycosyl hydrolase family 32
	JEONG1266_03550	2	34	-7.733648	aminoimidazole riboside kinase
	JEONG1266_03555	3	34	-9.544032	MFS transporter
	JEONG1266_03560	3	37	-8.988187	hypothetical protein
	JEONG1266_03565	2	35	-8.808909	serine recombinase
	JEONG1266_03570	2	34	-8.255857	hypothetical protein
	JEONG1266_03575	2	37	-8.446085	hypothetical protein
	JEONG1266_03580	2	33	-5.195224	replication protein
	JEONG1266_03585	1	30	-5.070766	hypothetical protein
	JEONG1266_03590	1	32	-5.619943	hypothetical protein
	JEONG1266_03595	1	32	-5.655777	DNA transfer protein
	JEONG1266_03600	1	32	-6.442246	DNA transfer protein p33
	JEONG1266_03605	2	28	-4.835513	integrase
	JEONG1266_03615	2	28	-5.505615	*integrase
	JEONG1266_03620	3	33	-5.443543	hypothetical protein
	JEONG1266_03625	3	35	-4.820833	hypothetical protein
	JEONG1266_03630	3	38	-4.391850	hypothetical protein
	JEONG1266_03635	2	35	-4.538082	adenine methylase
	JEONG1266_03640	2	35	-5.327437	hypothetical protein
	JEONG1266_03645	0	32	-4.645631	hypothetical protein
	JEONG1266_03650	-1	32	-5.110131	antirepressor
	JEONG1266_03655	-1	31	-5.378705	hypothetical protein
	JEONG1266_03660	1	32	-4.875719	DUF4752 domain-containing protein
	JEONG1266_03665	1	30	-5.350529	hypothetical protein
	JEONG1266_03670	3	32	-5.315300	hypothetical protein
	JEONG1266_03675	2	31	-5.518478	sugar acetyltransferase inhibitor
	JEONG1266_03680	4	32	-4.891734	hypothetical protein
	JEONG1266_03685	2	25	-3.728984	hypothetical protein
	JEONG1266_03690	2	20	-2.755160	hypothetical protein
	JEONG1266_03695	3	23	-0.897067	conjugal transfer protein TraR
	JEONG1266_03700	2	23	-1.673398	hypothetical protein
	JEONG1266_03705	3	24	-1.829845	hypothetical protein
	JEONG1266_03710	4	26	-3.167969	exonuclease
	JEONG1266_03715	6	30	-6.783287	phage recombination protein Bet
	JEONG1266_03720	3	38	-9.060100	host-nuclease inhibitor protein Gam
	JEONG1266_03725	5	48	-12.769308	protein kil
	JEONG1266_03730	5	51	-13.324875	hypothetical protein
	JEONG1266_03735	5	48	-13.019568	hypothetical protein
	JEONG1266_03740	4	44	-11.599790	hypothetical protein
	JEONG1266_03745	4	41	-10.810924	antitermination protein
	JEONG1266_03750	5	42	-11.413387	protein kinase
	JEONG1266_03755	4	31	-7.404009	hypothetical protein
	JEONG1266_03760	2	23	-4.073384	hypothetical protein
	JEONG1266_03765	2	24	-3.435165	repressor
	JEONG1266_03770	2	24	-2.912522	transcriptional regulator
	JEONG1266_03775	1	24	-2.441401	hypothetical protein
	JEONG1266_03780	2	26	-2.481487	Replication protein O
	JEONG1266_03785	0	32	-3.295664	Replication protein P
	JEONG1266_03790	5	40	-7.682507	protein ren
	JEONG1266_03795	4	39	-6.824621	hypothetical protein
	JEONG1266_03800	3	43	-6.705706	hypothetical protein
	JEONG1266_03805	3	37	-6.233360	hypothetical protein
	JEONG1266_03810	2	36	-6.452711	NinB protein
	JEONG1266_03815	2	35	-5.515881	endonuclease
	JEONG1266_03820	1	31	-3.856966	phage N-6-adenine-methyltransferase
	JEONG1266_03825	2	28	-4.151423	protein ninE
	JEONG1266_03830	2	26	-4.295411	antirepressor
	JEONG1266_03835	1	28	-3.808897	hypothetical protein
	JEONG1266_03840	1	26	-2.375533	protein ninF
	JEONG1266_03845	0	30	-3.802279	DNA-binding protein
	JEONG1266_03850	2	32	-4.253683	protein ninG
	JEONG1266_03855	3	27	-0.701056	protein ninH
	JEONG1266_03860	3	28	-0.380340	antitermination protein
	JEONG1266_03865	4	26	-0.092790	DNA methylase
	JEONG1266_03885	5	27	-0.077190	***Shiga toxin subunit A
	JEONG1266_03890	4	26	1.950422	Shiga toxin subunit B
	JEONG1266_03895	3	24	1.750417	hypothetical protein
	JEONG1266_03900	4	23	-0.632648	hypothetical protein
	JEONG1266_03905	3	22	-0.224043	hypothetical protein
	JEONG1266_03910	1	21	-1.749469	holin
	JEONG1266_03915	0	22	-2.397073	lysozyme
	JEONG1266_03920	0	21	-2.654855	antirepressor
	JEONG1266_03925	2	21	-1.064422	hypothetical protein
	JEONG1266_03930	2	21	-0.798995	endopeptidase
	JEONG1266_03935	2	20	-0.524734	lipoprotein bor
	JEONG1266_03940	3	20	0.025663	terminase
	JEONG1266_03945	3	22	0.543034	terminase
	JEONG1266_03950	4	21	1.217834	portal protein
	JEONG1266_03955	4	23	1.447324	transposase
	JEONG1266_03960	5	24	1.544764	transposase
	JEONG1266_03965	6	27	1.217108	hypothetical protein
	JEONG1266_03970	7	27	0.868906	N4-gp56 family major capsid protein
	JEONG1266_03975	8	28	3.802037	hypothetical protein
	JEONG1266_03980	9	32	4.429583	hypothetical protein
	JEONG1266_03985	8	33	4.097378	hypothetical protein
	JEONG1266_03990	7	30	2.886447	hypothetical protein
	JEONG1266_03995	6	30	2.186614	phage tail protein
	JEONG1266_04000	5	30	1.859961	phage tail protein
	JEONG1266_04005	5	29	-3.064447	hypothetical protein
	JEONG1266_04010	4	29	-3.495643	hypothetical protein
	JEONG1266_04015	4	28	-3.280274	phage tail protein
	JEONG1266_04020	2	31	-4.369161	hypothetical protein
	JEONG1266_04025	3	33	-4.454424	hypothetical protein
	JEONG1266_04030	4	29	-2.456966	hypothetical protein
	JEONG1266_04035	4	29	-0.103603	hok/gef family protein
	JEONG1266_04040	2	26	0.394047	hypothetical protein
	644#JEONG1266_03435	PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase sign...	614	0.0
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase
		           signature.
		          Length = 572
		
		 Score =  614 bits (1585), Expect = 0.0
		 Identities = 202/567 (35%), Positives = 331/567 (58%), Gaps = 8/567 (1%)
		
		Query: 117 LYGNVLASGVGVGTLTLLQSDSLDSYRAIPA-SAQDSTRLEHSLATLAEQLNQQLRERDG 175
		           + G   +SGV +    +    ++D  +      + +  +L  +L    E+L     + + 
		Sbjct: 5   ITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEA 64
		
		Query: 176 ----ESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIIRNMEQVCAKLSASASDYL 231
		               +   I +AHL ++ D E    I+  +  +      A+    +   +   +  ++Y+
		Sbjct: 65  SMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYM 124
		
		Query: 232 RERVSDIRDISEQLL-HITWPELKPRNNLVLEKPTILVAEDLTPSQFLSLDLKNLAGMIL 290
		           +ER +DIRD+S+++L H+   E      +   + T+++AEDLTPS    L+ + + G   
		Sbjct: 125 KERAADIRDVSKRVLGHLIGVETGSLATIA--EETVIIAEDLTPSDTAQLNKQFVKGFAT 182
		
		Query: 291 EKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCGVLAINPNDAVSGYYQV 350
		           +  GRTSH+ I++R+  IP + G          G   ++D   G++ +NP +     Y+ 
		Sbjct: 183 DIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEE 242
		
		Query: 351 AQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTEMLY 410
		            +   +K++++ A+   + + ++D   +++AANIGT  +  G  ANG EG+GL+RTE LY
		Sbjct: 243 KRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLY 302
		
		Query: 411 MDRDSEPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNIPQEENPFLGYRAVR 470
		           MDRD  P E+EQFEAY++V+     KP++ RT+DIGGDK + YL +P+E NPFLG+RA+R
		Sbjct: 303 MDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIR 362
		
		Query: 471 IYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHGLDQILWVKGEIQKAIVELKRDGLRHA 530
		           +  E   +FRTQLRA+LRA+++GN ++M PM+  L+++   K  +Q+   +L  +G+  +
		Sbjct: 363 LCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVS 422
		
		Query: 531 ETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSF 590
		           ++I +GIMVE+PS     + F  EVDFFSIG+ND+ QY  A DR N RVS LY P  P+ 
		Sbjct: 423 DSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAI 482
		
		Query: 591 LRMLQQIVTTAHQRGKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQLD 650
		           LR++  ++  AH  GKWVG+CGE+ G+   +PLLLGLGLDE SMS+  I   +SQL +L 
		Sbjct: 483 LRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLS 542
		
		Query: 651 SEACRELARQACECRSAQEIEALLTAF 677
		            E  +  A++A    +A+E+E L+   
		Sbjct: 543 KEELKPFAQKALMLDTAEEVEQLVKKT 569
		
		
	646#JEONG1266_03445	HTHFIS#FIS bacterial regulatory protein HTH signature.	55	5e-11
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 55.2 bits (133), Expect = 5e-11
		 Identities = 21/132 (15%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
		
		Query: 2   KVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDG 61
		            +++ +D+   +  L+  +        V    +   + +++     D +  D+ +P  + 
		Sbjct: 5   TILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62
		
		Query: 62  V-LLAQNISQFAHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRITGMLQKLEAA 118
		             LL +        P +V ++A      A++A E  A+DY+ KP+  + + G++ +  A 
		Sbjct: 63  FDLLPRIKKARPDLPVLV-MSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		Query: 119 WQQQQTSSTPAA 130
		            +++ +     +
		Sbjct: 122 PKRRPSKLEDDS 133
		
		
	647#JEONG1266_03450	PF06580#Sensor histidine kinase	223	3e-70
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  223 bits (570), Expect = 3e-70
		 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 11/207 (5%)
		
		Query: 348 RAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIE 407
		              ++  MA +A+L AL+++INPHF+FNALN I + I  +P  AR+++ +LS  +RY++ 
		Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209
		
		Query: 408 LKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEV-NCCIPSLLIQPLVENAIV 466
		             +  Q+ +  EL  +  Y+ +   +F D+L     I+  + +  +P +L+Q LVEN I 
		Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIK 269
		
		Query: 467 HGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHR 526
		           HGI      G + +   +    V + V +TG        E            GL NV  R
		Sbjct: 270 HGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------STGTGLQNVRER 321
		
		Query: 527 VKLLYGE--GLHIRRLEPGTEIAFYIP 551
		           +++LYG    + +   +        IP
		Sbjct: 322 LQMLYGTEAQIKLSEKQGKVNAMVLIP 348
		
		
	659#JEONG1266_03510	HTHFIS#FIS bacterial regulatory protein HTH signature.	76	2e-16
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 76.4 bits (188), Expect = 2e-16
		 Identities = 30/105 (28%), Positives = 51/105 (48%)
		
		Query: 890 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFE 949
		           +IL+ADD    R +L + L+  GYDV   ++       ++    DL++TDV MP+ + F+
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 950 LTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLD 994
		           L  ++++    LP+  ++A        K    G    L KP  L 
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
		
		
	660#JEONG1266_03515	HTHFIS#FIS bacterial regulatory protein HTH signature.	49	3e-09
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 49.1 bits (117), Expect = 3e-09
		 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
		
		Query: 4   IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63
		           ++ DD       +   L +   ++    +   +  + +     D+V+ DV +P  N   +
		Sbjct: 7   LVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65
		
		Query: 64  LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123
		           L  ++K +    ++++SA+N                          + AI+A++ G   +
		Sbjct: 66  LPRIKKARPDLPVLVMSAQNT------------------------FMTAIKASEKGAYDY 101
		
		Query: 124 ---PFSLNRFVGSLTSDQQKLDSLSKQE 148
		              PF L      +    + L    ++ 
		Sbjct: 102 LPKPFDLTE---LIGIIGRALAEPKRRP 126
		
		
	661#JEONG1266_03520	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	79	5e-18
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 78.7 bits (194), Expect = 5e-18
		 Identities = 63/412 (15%), Positives = 122/412 (29%), Gaps = 96/412 (23%)
		
		Query: 13  RRKYFSLLAIVLFIAFSGAYAYWSMELEDMISTDDAYVT-GNADPISAQVSGSVTVVNHK 71
		           RR       I+ F+  +   +    ++E + + +      G +  I    +  V  +  K
		Sbjct: 55  RRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113
		
		Query: 72  DTNYVRQGDILVSLDKTDATIALNKA---------------------------------- 97
		           +   VR+GD+L+ L    A     K                                   
		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173
		
		Query: 98  ------------------KNNLANIVRQTNKLYLQDKQYSAEVASARIQ---YQQSLEDY 136
		                             K   +    Q  +  L   +  AE  +   +   Y+      
		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233
		
		Query: 137 NRRV----PLAKQGVISKE----------TLEHTKDTLISSKAALNAAIQAYKANKALVM 182
		             R+     L  +  I+K              +      S    + + I + K    LV 
		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
		
		Query: 183 N-------TPLNR-QPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQ-VGETVSPG 233
		                     L +    +        +     + + I++PV+  + Q  V   G  V+  
		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
		
		Query: 234 QSLMAVVPARQ-MWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNA 292
		           ++LM +VP    + V A  +   +  + +GQ+  I  +       F     G  +G    
		Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE------AFPYTRYGYLVGK--- 404
		
		Query: 293 FSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEH----PLRIGLSMTATIDT 340
		              +         + +V  V   +S++   L       PL  G+++TA I T
		Sbjct: 405 VKNINLDAIEDQRLGLVFNVI--ISIEENCLSTGNKNIPLSSGMAVTAEIKT 454
		
		
	662#JEONG1266_03525	TCRTETB#Tetracycline resistance protein TetB signature.	120	1e-31
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score =  120 bits (302), Expect = 1e-31
		 Identities = 97/408 (23%), Positives = 169/408 (41%), Gaps = 25/408 (6%)
		
		Query: 19  VTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQ 78
		           + I L + +F  +L+  + NV++P I+           WV T+F +  +I   V G+L+ 
		Sbjct: 15  ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74
		
		Query: 79  RIGELRLFLLSVTFFSLSSLMCSLSIN-LDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPP 137
		           ++G  RL L  +      S++  +  +   +LI  R +QG  A     L   ++ R  P 
		Sbjct: 75  QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134
		
		Query: 138 EKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRE 197
		           E R  A  L    V +    GP +GG I     W   +L+ +PM  I+    L  L  +E
		Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKE 192
		
		Query: 198 TETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIIILTVVSVIFLISLVIWES 257
		                   ++ G+ L+ +G+  +  ML        F +S  I   +VSV+  +  V    
		Sbjct: 193 VRIKG-HFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIR 241
		
		Query: 258 TSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPI 317
		              +P +D  L K+  F IG++     +   +G + ++P ++++    +    G      
		Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301
		
		Query: 318 GIMPLLISPLIG-----RYGNKIDMRVLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQ 372
		           G M ++I   IG     R G    + + VTF     +V +   S     T  F  II+  
		Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL----SVSFLTASFLLETTSWFMTIIIVF 357
		
		Query: 373 FFQGFAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL 420
		              G +       ++TI  S L   +     S+ NF   LS   G ++
		Sbjct: 358 VLGGLSFTK--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
		
		
	676#JEONG1266_03595	RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family...	28	0.037
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family
		           signature.
		          Length = 1024
		
		 Score = 28.0 bits (62), Expect = 0.037
		 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
		
		Query: 93  GQARYQSLAAAEATGGLGSTATGNQLAAIAPTLGQNWLS--GQMNNYNNLANIGLGALTG 150
		           G+   Q + A  A  GL ++A    L A A TL  + LS     + +     I   +   
		Sbjct: 284 GKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRF 343
		
		Query: 151 QANAGQNYANNVSQLYQQQAAASAANANKPSGLQSFATGAIGGAASGAMIGSAVPVIGTG 210
		           +   G +  + ++  +++  A  A+     + L S +   I  AA+ +++G+ V  +   
		Sbjct: 344 KK-LGYDGDSLLAAFHKETGAIDASLTTISTVLASVS-SGISAAATTSLVGAPVSALVGA 401
		
		Query: 211 IGALAGGVI 219
		           +  +  G++
		Sbjct: 402 VTGIISGIL 410
		
		
	677#JEONG1266_03600	TCRTETB#Tetracycline resistance protein TetB signature.	35	4e-04
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 34.9 bits (80), Expect = 4e-04
		 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
		
		Query: 229 LSFAEISSVV------FILMSVYMVAKSQNSNGLQYDA-LFIPSMAFSILVFSFNGGIIS 281
		           LS AEI SV+       +++  Y+     +  G  Y   + +  ++ S L  SF     S
		Sbjct: 289 LSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTS 348
		
		Query: 282 KIISNKVMILLGDASFSFYLVHTIVISTLSKFFNVSGLGAISVIKFIVMALFASLFISIM 341
		             ++  ++ +LG  SF+  ++ TIV S+L +    +G+  ++   F+      ++   ++
		Sbjct: 349 WFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
		
		
	703#JEONG1266_03735	UREASE#Urea amidohydrolase (urease) protein signature.	28	0.011
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 27.8 bits (62), Expect = 0.011
		 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
		
		Query: 57  IMLAQHALLIAISSDLNAYGVVCEFDWN----DGNGQEGWPSMDGSEGIRITD---IDTS 109
		           + LA   L I +  D   +G   +F       DG GQ       G+    IT+   +D  
		Sbjct: 22  VRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTREGGAVDTVITNALILDHW 81
		
		Query: 110 GIFNSD 115
		           GI  +D
		Sbjct: 82  GIVKAD 87
		
		
	706#JEONG1266_03750	YERSSTKINASE#Yersinia serine/threonine protein kinase signature.	31	0.007
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.
		          Length = 732
		
		 Score = 31.2 bits (70), Expect = 0.007
		 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
		
		Query: 122 HIHSKGLMHFDIKPNNIMISNRN-EAMLSDFGLSQLVNE------ESRAAPEFG 168
		           H+   G++H DIKP N++    + E ++ D GL     E      ES  APE G
		Sbjct: 260 HLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAPELG 313
		
		
	710#JEONG1266_03770	HTHTETR#TetR bacterial regulatory protein HTH signature.	30	5e-04
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 30.0 bits (67), Expect = 5e-04
		 Identities = 9/24 (37%), Positives = 14/24 (58%)
		
		Query: 10 GVGIPEVAKACGVSERAVYKWLKN 33
		             + E+AKA GV+  A+Y   K+
		Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKD 54
		
		
	713#JEONG1266_03785	FLGMOTORFLIG#Flagellar motor switch protein FliG signature.	28	0.039
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
		          Length = 344
		
		 Score = 27.8 bits (62), Expect = 0.039
		 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
		
		Query: 2   KNIAAQMVNFDREQM-----------RRIANNMPEQYDEKPQVQQVAQIINGVFSQLLAT 50
		            N+A ++   DR              +++A+   E Y     V  V +IIN    +    
		Sbjct: 165 TNVARRIALMDRTSPEVVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
		
		Query: 51  FPASLANRDQNELNEIR 67
		              SL   D     EI+
		Sbjct: 225 IIESLEEEDPELAEEIK 241
		
		
	727#JEONG1266_03855	HTHFIS#FIS bacterial regulatory protein HTH signature.	27	0.004
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 27.1 bits (60), Expect = 0.004
		 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
		
		Query: 10  DMLVEAYE----NQTEVARILNCSRNTVRK 35
		            +++ A      NQ + A +L  +RNT+RK
		Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRK 468
		
		
	730#JEONG1266_03885	SHIGARICIN#Ribosome inactivating protein family signature.	144	4e-43
		>SHIGARICIN#Ribosome inactivating protein family signature.
		          Length = 289
		
		 Score =  144 bits (364), Expect = 4e-43
		 Identities = 53/277 (19%), Positives = 115/277 (41%), Gaps = 35/277 (12%)
		
		Query: 4   ILFKWVLCLLLGFSSVSYSREFTIDFSTQQSYVSSLNSIRTEISTPLEHISQGTTSVSVI 63
		           +    +L L L   +V     F +  +T  SY   ++++R  +    +        + ++
		Sbjct: 6   VFSLLILTLFLTAPAVEGDVSFRLSGATSSSYGVFISNLRKALPYERK-----LYDIPLL 60
		
		Query: 64  NHTPPGSYFAVDIRGLDVYQARFDHLRLIIEQNNLYVAGFVNTATNTFYRFSDFT----- 118
		             T PGS     I  L  Y    + + + I+  N+YV G+   A +T Y F++ +     
		Sbjct: 61  RSTLPGSQRYALIH-LTNYAD--ETISVAIDVTNVYVMGY--RAGDTSYFFNEASATEAA 115
		
		Query: 119 HISVPGVT-TVSMTTDSSYTTLQRVAALERSGMQISRHSLVSSYLALMEFSGNTMTRDAS 177
		                     V++    +Y  LQ  A   R  + +   +L S+   L  ++ N+    A+
		Sbjct: 116 KYVFKDAKRKVTLPYSGNYERLQIAAGKIRENIPLGLPALDSAITTLFYYNANS----AA 171
		
		Query: 178 RAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTLNWGRISNVLPEYRGE 237
		            A++  +  T+EA R++ I+++  + + +T   +  +   + L  +W  +S  +      
		Sbjct: 172 SALMVLIQSTSEAARYKFIEQQIGKRVDKT---FLPSLAIISLENSWSALSKQIQIASTN 228
		
		Query: 238 DGV----------RVGRISFNNISA--ILGTVAVILN 262
		           +G           +  R++  N+ A  +   +A++LN
		Sbjct: 229 NGQFETPVVLINAQNQRVTITNVDAGVVTSNIALLLN 265
		
		
	740#JEONG1266_03935	PF06291#Lambda prophage Bor protein	163	3e-56
		>PF06291#Lambda prophage Bor protein
		          Length = 102
		
		 Score =  163 bits (413), Expect = 3e-56
		 Identities = 89/97 (91%), Positives = 91/97 (93%)
		
		Query: 1   MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGG 60
		           MKKML + ALA+LITGCAQQTFTV NK TAV PKETITHHFFVSGIGQKKTVDAAKICGG
		Sbjct: 6   MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHFFVSGIGQKKTVDAAKICGG 65
		
		Query: 61  TENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 97
		            ENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ
		Sbjct: 66  AENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 102
		
		
	741#JEONG1266_03940	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	31	0.008
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 30.6 bits (69), Expect = 0.008
		 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 25/91 (27%)
		
		Query: 179 KILKAEQALDRNIARIESIERSLL----------------TLDVLAETAPKLRADRERIN 222
		           K ++A   L    +++E IE  +L                 LD L +T   +      + 
		Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELA 319
		
		Query: 223 AARDKLRAETDILTNQRRGVVTPVSDIVSSL 253
		              ++          Q   +  PVS  V  L
		Sbjct: 320 KNEERQ---------QASVIRAPVSVKVQQL 341
		
		
	743#JEONG1266_03950	CHANLCOLICIN#Channel forming colicin signature.	33	0.004
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 33.1 bits (75), Expect = 0.004
		 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
		
		Query: 613 QEVAAQQQALQQQQAELQMREMAGRVAKLEADAARAHAAAQRDNASAQREVALTQGQRYV 672
		           +E  A ++A Q+  AE + +E+     + +A+  R    A+ +    +R  AL++  + V
		Sbjct: 141 KEAEAAEKAFQE--AEQRRKEIE----REKAETERQLKLAEAEE---KRLAALSEEAKAV 191
		
		Query: 673 DALNQAHTAEIITGVQNMEQEQDVLQQQMLYTLQQRMNEMS 713
		           +   +   +   + V  M+ E   L  ++  ++  R  EM 
		Sbjct: 192 EIAQKK-LSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMK 231
		
		
	752#JEONG1266_04000	CHANLCOLICIN#Channel forming colicin signature.	35	0.001
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 34.7 bits (79), Expect = 0.001
		 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
		
		Query: 130 KNTQATQSKESAAASAKSASDSAK--TATSRAAEAGQKATDATEAATRAVTAAGNAEESS 187
		           K TQA Q+  + AA+   A   A     T R  +   +A     + T + T   +A  ++
		Sbjct: 63  KKTQAEQAARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAA 122
		
		Query: 188 TRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATVSAEEARRM 238
		            +A +         EKAR+ AE A  A + A +  +R E     AE  R++
		Sbjct: 123 MQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQ--RRKEIEREKAETERQL 171
		
		
	759#JEONG1266_04035	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	110	2e-32
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  110 bits (276), Expect = 2e-32
		 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
		
		Query: 79  SGYEGKDKNPQGINIRYRYEITDD-FGVITSFTWTRSLTNSQTFIDVQSADHTRKIKNPA 137
		           S  +G+     G N++YRYE  +   GVI SFT+T                     K+  
		Sbjct: 35  SDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTE--------------------KSRT 74
		
		Query: 138 ASARTDIRANYWSLLAGPSWRVNQYMSLYAMAGMGVAKVSADLKIKDNINSSGGFSESNS 197
		           AS+    +  Y+ + AGP++R+N + S+Y + G+G  K             +   +  + 
		Sbjct: 75  ASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQT----------TEYPTYKHD 124
		
		Query: 198 TKKNSLAWAAGAQFNLNESVTLDVAYEGSGSGDWRTSGITAGIGLKF 244
		           T     ++ AG QFN  E+V LD +YE S           AG+G +F
		Sbjct: 125 TSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF 171
		
		
	760#JEONG1266_04040	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	34	2e-06
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 33.6 bits (77), Expect = 2e-06
		 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
		
		Query: 1  MSQKSLIT--VTICMTVIFTIWMLHGSLCEFRLNLWGAEFAAFLQCK 45
		          + + SL+   + +C+T++   ++   SLCE R      E AAF+  +
		Sbjct: 3  LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49
		
		
JEONG1266_04380	JEONG1266_04490	Y	Y	N	JEONG1266_04305	JEONG1266_04500
	JEONG1266_04380	0	28	4.210558	NADH-quinone oxidoreductase subunit A
	JEONG1266_04385	0	29	4.215302	NADH dehydrogenase
	JEONG1266_04390	0	30	4.429655	NADH-quinone oxidoreductase subunit C/D
	JEONG1266_04395	0	30	4.107201	NADH-quinone oxidoreductase subunit E
	JEONG1266_04400	0	31	4.016404	NADH-quinone oxidoreductase subunit F
	JEONG1266_04405	-1	31	4.290990	NADH-quinone oxidoreductase subunit G
	JEONG1266_04410	0	31	3.840651	NADH-quinone oxidoreductase subunit H
	JEONG1266_04415	0	30	4.438492	NADH-quinone oxidoreductase subunit I
	JEONG1266_04420	1	27	3.725075	NADH:ubiquinone oxidoreductase subunit J
	JEONG1266_04425	0	24	3.162309	NADH-quinone oxidoreductase subunit K
	JEONG1266_04430	-2	17	-0.283725	NADH-quinone oxidoreductase subunit L
	JEONG1266_04435	-1	14	-2.272136	NADH-quinone oxidoreductase subunit M
	JEONG1266_04440	-1	17	-4.193536	NADH:ubiquinone oxidoreductase subunit N
	JEONG1266_04445	0	27	-7.694519	hypothetical protein
	JEONG1266_04450	-1	22	-5.079479	aminopeptidase
	JEONG1266_04455	-1	15	-1.438512	deubiquitinase
	JEONG1266_04460	-1	11	2.929434	ribonuclease Z
	JEONG1266_04465	-1	14	3.670687	effector protein
	JEONG1266_04470	0	14	4.840625	protein ElaB
	JEONG1266_04475	0	14	5.002515	isochorismate synthase MenF
	JEONG1266_04480	0	14	5.183892	2-succinyl-5-enolpyruvyl-6-hydroxy-3-
	JEONG1266_04485	-1	13	3.835844	2-succinyl-6-hydroxy-2,
	JEONG1266_04490	0	15	3.407972	1,4-dihydroxy-2-naphthoyl-CoA synthase
	829#JEONG1266_04385	FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein Fl...	29	0.018
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP
		           signature.
		          Length = 245
		
		 Score = 28.6 bits (64), Expect = 0.018
		 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
		
		Query: 68  MVTSFT---AVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP 120
		           M+TSFT    V  + R       A P Q  L +     F  M+PVI ++Y    +P
		Sbjct: 60  MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQP 115
		
		
	845#JEONG1266_04465	AUTOINDCRSYN#Autoinducer synthesis protein signature.	35	6e-05
		>AUTOINDCRSYN#Autoinducer synthesis protein signature.
		          Length = 216
		
		 Score = 34.8 bits (80), Expect = 6e-05
		 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
		
		Query: 1  MIEWQDLHHSELSVSQLYALLQLRCAVFV--------VEQNCPYQDIDGDDLTGDNRHIL 52
		          M+E  D++H+ LS ++   L  LR   F               +   D +    +  ++ 
		Sbjct: 1  MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNN----NTTYLF 56
		
		Query: 53 GWKNDELVAYARILKSDDD 71
		          G K++ ++   R +++   
		Sbjct: 57 GIKDNTVICSLRFIETKYP 75
		
		
JEONG1266_04765	JEONG1266_04825	Y	N	N	JEONG1266_04685	JEONG1266_04900
	JEONG1266_04765	0	22	3.720057	ferredoxin-type protein NapF
	JEONG1266_04770	-1	21	4.360495	nitrate reductase
	JEONG1266_04775	-1	22	4.888087	nitrate reductase catalytic subunit
	JEONG1266_04780	-1	23	4.460707	ferredoxin-type protein NapG
	JEONG1266_04785	-1	20	4.457479	quinol dehydrogenase ferredoxin subunit NapH
	JEONG1266_04790	-1	17	4.168991	nitrate reductase
	JEONG1266_04795	-1	15	3.497979	cytochrome c-type protein NapC
	JEONG1266_04800	-1	16	3.371152	heme ABC transporter ATP-binding protein CcmA
	JEONG1266_04805	-1	16	3.085010	heme exporter protein CcmB
	JEONG1266_04810	0	18	4.562389	heme ABC transporter permease
	JEONG1266_04820	0	22	4.085438	heme exporter protein CcmD
	JEONG1266_04825	0	20	3.636800	cytochrome c biogenesis protein CcmE
JEONG1266_05085	JEONG1266_05155	Y	Y	N	JEONG1266_05010	JEONG1266_05205
	JEONG1266_05085	2	17	-2.671614	galactose/methyl galactoside ABC transporter
	JEONG1266_05090	1	14	-0.670135	galactoside ABC transporter permease MglC
	JEONG1266_05095	2	16	-0.207844	dihydropyrimidine dehydrogenase subunit B
	JEONG1266_05100	2	17	-0.291281	dihydropyrimidine dehydrogenase
	JEONG1266_05105	0	15	-0.653277	hypothetical protein
	JEONG1266_05110	0	15	1.395047	vancomycin high temperature exclusion protein
	JEONG1266_05115	0	17	2.579077	cytidine deaminase
	JEONG1266_05120	0	19	2.618495	CidB/LrgB family autolysis modulator
	JEONG1266_05125	-1	20	2.690129	hypothetical protein
	JEONG1266_05130	-1	20	3.889180	transcriptional regulator
	JEONG1266_05135	-1	20	4.496775	4-hydroxybenzoate transporter
	JEONG1266_05140	-2	20	3.829244	gentisate 1,2-dioxygenase
	JEONG1266_05145	-2	16	3.672856	5-carboxymethyl-2-hydroxymuconate isomerase
	JEONG1266_05150	-1	19	3.591683	maleylacetoacetate isomerase
	JEONG1266_05155	0	19	3.519307	salicylate hydroxylase
	964#JEONG1266_05085	PF05272#Virulence-associated E family protein	32	0.007
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 32.0 bits (72), Expect = 0.007
		 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
		
		Query: 24  PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYKKDSGTILFQGKEIDFHSAK 83
		           PG K  D   +         L G  G GKSTL+  L G+         F     D  + K
		Sbjct: 591 PGCKF-DYSVV---------LEGTGGIGKSTLINTLVGLD-------FFSDTHFDIGTGK 633
		
		Query: 84  EALENGISMVHQEL 97
		           ++ E    +V  EL
		Sbjct: 634 DSYEQIAGIVAYEL 647
		
		
	967#JEONG1266_05100	AEROLYSIN#Aerolysin signature.	29	0.029
		>AEROLYSIN#Aerolysin signature.
		          Length = 493
		
		 Score = 29.2 bits (65), Expect = 0.029
		 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
		
		Query: 359 QRNTIKTQNYQ-TRDPQVFAAGDIVEGDKTVVYAV 392
		            +  IK  N+    DP  F  GD+ + D+ +V  V
		Sbjct: 189 DKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTV 223
		
		
	974#JEONG1266_05135	TCRTETB#Tetracycline resistance protein TetB signature.	51	4e-09
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 51.4 bits (123), Expect = 4e-09
		 Identities = 62/407 (15%), Positives = 142/407 (34%), Gaps = 29/407 (7%)
		
		Query: 22  RVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLAPLFGAGLLGLTAGALLCGPLS 81
		           +++I   ++      +   +    PDI   +         +  A +L  + G  + G LS
		Sbjct: 14  QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73
		
		Query: 82  DRFGRKRVIELCVFLFGALSLASAFS-PDLQTLVFLRFLTGLGLGGAMPNTIT-MTSEYL 139
		           D+ G KR++   + +    S+           L+  RF+ G G   A P  +  + + Y+
		Sbjct: 74  DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYI 132
		
		Query: 140 PARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVLPLMLFVALLVVLPE 199
		           P   RG    L+     +G   G  +   +   I W  +L++  +  + +   L+ +L +
		Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPF-LMKLLKK 191
		
		Query: 200 SPRWQVRRQLPQAVI-----------AKTVSAITRERYVDTHFYLIESASVTKGSIRQLF 248
		             R +    +   ++             + S       V +    ++             
		Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251
		
		Query: 249 MGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASRVTAAFQI-------G 301
		           +G+ +P  ++  +   +    +    S +P ++     D+   S       I        
		Sbjct: 252 LGKNIPF-MIGVLCGGIIFGTVAGFVSMVPYMMK----DVHQLSTAEIGSVIIFPGTMSV 306
		
		Query: 302 GTLGALALGVLMDKFNPFRVLTLSYAIGAICIVMIGLSQDG-LWLMALAIFGTGIGISGS 360
		              G +  G+L+D+  P  VL +     ++  +      +   W M + I     G+S +
		Sbjct: 307 IIFGYIG-GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365
		
		Query: 361 QVGLNALTATLYPTQSRATGVSWSNAIGRCGAIVGSLSGGVMMAMNF 407
		           +  ++ + ++    Q    G+S  N         G    G ++++  
		Sbjct: 366 KTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
		
		
		
		 Score = 39.1 bits (91), Expect = 3e-05
		 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 5/200 (2%)
		
		Query: 251 RQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASRVTAAFQIGGTLGALALG 310
		           R   I + L ++ F S+L   +L+  +P + N         + V  AF +  ++G    G
		Sbjct: 11  RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70
		
		Query: 311 VLMDKFNPFRVLTLSYAIGAICIVMIGLSQDGLWLMALAIFGTGIGISGSQVGLNALTAT 370
		            L D+    R+L     I     V+  +      L+ +A F  G G +     +  + A 
		Sbjct: 71  KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130
		
		Query: 371 LYPTQSRATGVSWSNAIGRCGAIVGSLSGGVMMAMNFSFDTLFFIIAVPAAISAVMLTLL 430
		             P ++R        +I   G  VG   GG M+A    +  L  I      I+ + +  L
		Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGG-MIAHYIHWSYLLLI----PMITIITVPFL 185
		
		Query: 431 ITVVRQSTSVPDSLPRAGVV 450
		           + ++++   +       G++
		Sbjct: 186 MKLLKKEVRIKGHFDIKGII 205
		
		
JEONG1266_05200	JEONG1266_05615	Y	Y	Y	JEONG1266_05125	JEONG1266_05320
	JEONG1266_05200	0	16	3.353423	beta-glucosidase
	JEONG1266_05205	3	19	3.547874	osmoprotectant uptake system substrate-binding
	JEONG1266_05210	1	15	0.836969	osmoprotectant uptake system permease
	JEONG1266_05215	0	17	-0.843623	ATP-binding protein
	JEONG1266_05220	1	21	-2.151652	osmoprotectant uptake system permease
	JEONG1266_05225	2	27	-3.970116	hypothetical protein
	JEONG1266_05230	2	26	-3.770237	transcriptional regulator
	JEONG1266_05235	3	31	-5.244931	integrase
	JEONG1266_05240	0	28	-3.259062	excisionase
	JEONG1266_05245	-1	24	-4.180017	hypothetical protein
	JEONG1266_05250	-1	25	-4.318664	hypothetical protein
	JEONG1266_05255	0	26	-4.981080	hypothetical protein
	JEONG1266_05260	1	30	-5.528429	hypothetical protein
	JEONG1266_05265	1	33	-5.945402	hypothetical protein
	JEONG1266_05270	1	27	-3.892168	hypothetical protein
	JEONG1266_05275	1	28	-1.219753	hypothetical protein
	JEONG1266_05280	3	25	-1.253363	hypothetical protein
	JEONG1266_05285	2	24	-0.862088	hypothetical protein
	JEONG1266_05290	0	23	-2.769185	cruciferin
	JEONG1266_05295	0	22	-7.069408	exonuclease
	JEONG1266_05300	0	24	-8.073341	phage recombination protein Bet
	JEONG1266_05305	1	30	-10.092568	host-nuclease inhibitor protein Gam
	JEONG1266_05310	1	29	-9.149116	cell division inhibitor protein
	JEONG1266_05315	1	26	-8.271218	hypothetical protein
	JEONG1266_05320	1	23	-6.828495	acetyltransferase
	JEONG1266_05325	2	21	-1.453191	hypothetical protein
	JEONG1266_05330	2	19	-0.299528	transcriptional regulator
	JEONG1266_05335	1	19	0.200505	regulator
	JEONG1266_05340	0	21	0.219079	Replication protein O
	JEONG1266_05345	2	24	0.254405	replication protein
	JEONG1266_05350	1	24	-1.127304	transposase
	JEONG1266_05355	2	44	-9.692276	transposase
	JEONG1266_05360	3	50	-10.799929	protein ren
	JEONG1266_05365	4	56	-13.274531	multidrug transporter
	JEONG1266_05370	4	52	-12.811391	hypothetical protein
	JEONG1266_05375	4	52	-12.653201	hypothetical protein
	JEONG1266_05380	4	49	-11.207427	hypothetical protein
	JEONG1266_05385	2	38	-6.711774	transcriptional regulator
	JEONG1266_05390	2	32	-5.983092	hypothetical protein
	JEONG1266_05395	3	25	-0.958205	hypothetical protein
	JEONG1266_05400	1	25	1.911253	hypothetical protein
	JEONG1266_05405	1	24	2.125458	endodeoxyribonuclease
	JEONG1266_05410	1	26	2.461874	hypothetical protein
	JEONG1266_05415	3	30	2.599590	antitermination protein
	JEONG1266_05420	3	30	2.832747	***hypothetical protein
	JEONG1266_05440	2	26	2.064236	hypothetical protein
	JEONG1266_05445	3	23	-0.229391	hypothetical protein
	JEONG1266_05450	2	21	0.654267	holin
	JEONG1266_05455	2	20	-0.754402	lysozyme
	JEONG1266_05460	1	21	-1.398945	antirepressor
	JEONG1266_05465	2	21	1.954845	hypothetical protein
	JEONG1266_05470	2	23	3.185622	endopeptidase
	JEONG1266_05475	2	24	3.427552	hypothetical protein
	JEONG1266_05480	4	23	3.309623	terminase
	JEONG1266_05485	5	23	3.865860	terminase
	JEONG1266_05490	5	24	4.480119	hypothetical protein
	JEONG1266_05495	5	25	4.113622	phage portal protein
	JEONG1266_05505	5	23	3.792059	peptidase S14
	JEONG1266_05510	4	25	3.359250	recombinase RecA
	JEONG1266_05515	3	28	3.246044	DNA breaking-rejoining protein
	JEONG1266_05520	4	26	4.626930	phage tail protein
	JEONG1266_05525	4	26	4.484597	phage tail protein
	JEONG1266_05530	3	27	5.317452	phage tail protein
	JEONG1266_05535	4	29	5.999178	phage minor tail protein G
	JEONG1266_05540	4	30	7.022427	phage tail assembly protein T
	JEONG1266_05545	3	29	6.544270	phage tail tape measure protein
	JEONG1266_05550	5	31	6.346099	phage tail protein
	JEONG1266_05555	4	29	6.753102	phage minor tail protein L
	JEONG1266_05560	4	30	6.442469	phage tail protein
	JEONG1266_05565	4	27	5.727696	phage tail protein
	JEONG1266_05570	2	19	4.001192	phage tail protein
	JEONG1266_05575	-2	14	1.875830	enterobacterial Ail/Lom family protein
	JEONG1266_05580	-2	16	1.278915	phage tail protein
	JEONG1266_05585	-2	14	-2.482679	phage tail protein
	JEONG1266_05590	0	14	-0.414906	damage-inducible protein DinI
	JEONG1266_05595	0	14	0.374515	histidine kinase
	JEONG1266_05600	2	16	1.335578	two-component system response regulator YehT
	JEONG1266_05605	3	17	2.216897	hypothetical protein
	JEONG1266_05610	2	18	2.589108	hypothetical protein
	JEONG1266_05615	2	18	3.262146	hypothetical protein
	1001#JEONG1266_05270	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	29	0.033
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 28.9 bits (64), Expect = 0.033
		 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
		
		Query: 79  NVALALLDERERNQQYIKRRDQENEEIALTVGKLRVELEAAKSKLNEQREYYEGVIADGS 138
		           N + A   + +  +      + E  ++      L    ++ +  L+  RE  + + A+  
		Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333
		
		Query: 139 KRIAELEKQCAEWERKALSN 158
		           K   E + + +E  R++L  
		Sbjct: 334 K--LEEQNKISEASRQSLRR 351
		
		
	1005#JEONG1266_05290	TCRTETB#Tetracycline resistance protein TetB signature.	24	0.037
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 24.1 bits (52), Expect = 0.037
		 Identities = 7/23 (30%), Positives = 11/23 (47%)
		
		Query: 10  VGTITFVYSVTKRGWVFPGLSVI 32
		           VG + F+   T     F  +SV+
		Sbjct: 209 VGIVFFMLFTTSYSISFLIVSVL 231
		
		
	1016#JEONG1266_05345	FLGMOTORFLIG#Flagellar motor switch protein FliG signature.	27	0.009
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
		          Length = 344
		
		 Score = 27.1 bits (60), Expect = 0.009
		 Identities = 14/51 (27%), Positives = 21/51 (41%)
		
		Query: 17  RRIANNMPEQYDEKPQVQQVAQIINGVFRQLLATFPASLANRDQNELNEIR 67
		           +++A+   E Y     V  V +IIN   R+       SL   D     EI+
		Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIK 241
		
		
	1049#JEONG1266_05530	INTIMIN#Intimin signature.	31	0.006
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 30.8 bits (69), Expect = 0.006
		 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
		
		Query: 134 KEVITRTVKVTNVGKPSVAEERSEITPATAIKVTP-------------TSGTVAKGKTTT 180
		           ++ IT TVKV    KP   +E +  T    +  +              TS T  K   + 
		Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSA 734
		
		Query: 181 LT--VSFEPESATDKTFRAVSADPSKATI--SVKDMTITVNGVATGKVQIPVVSGNGQF 235
		               V+ + ++   + F  ++ D     I  +     +    +  G+V +    GNG++
		Sbjct: 735 RVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKY 793
		
		
	1052#JEONG1266_05545	LCRVANTIGEN#Low calcium response V antigen signature.	34	0.002
		>LCRVANTIGEN#Low calcium response V antigen signature.
		          Length = 326
		
		 Score = 34.3 bits (78), Expect = 0.002
		 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
		
		Query: 529 DLWKAESQYAVL-KEAATKRQLSEQEKSLLAHKDETLEYKRQLAELG---DKVEYQKRLN 584
		           +++KA ++Y +L K   T  Q+   EK +++ KD      ++   LG   +   Y K  N
		Sbjct: 205 EIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDFLGSENKRTGALGNLKNSYSYNKDNN 264
		
		Query: 585 ELAQQAVRFEEQQSAKQAAISAKARGLTDRQAQRESEAQRL 625
		           EL+  A    ++       +S K   L+D  ++  S  + L
		Sbjct: 265 ELSHFATTCSDKSRPLNDLVSQKTTQLSDITSRFNSAIEAL 305
		
		
	1058#JEONG1266_05575	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	141	3e-45
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  141 bits (358), Expect = 3e-45
		 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
		
		Query: 7   VILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG-SDDLNGINVKYRYEFMDA-LG 64
		           +   + +  V A T  ++    ST++ GY  A ++  G  + + G N+KYRYE  ++ LG
		Sbjct: 4   IACLSALAAVLAFTAGTSVAATSTVTGGY--AQSDAQGQMNKMGGFNLKYRYEEDNSPLG 61
		
		Query: 65  LITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRV 124
		           +I SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV Y + 
		Sbjct: 62  VIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKF 113
		
		Query: 125 STFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGSGSG 184
		            T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE S   
		Sbjct: 114 QT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYEQSRIR 156
		
		Query: 185 DWRTDGFIVGVGYKF 199
		                 +I GVGY+F
		Sbjct: 157 SVDVGTWIAGVGYRF 171
		
		
	1059#JEONG1266_05580	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	39	4e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 38.9 bits (90), Expect = 4e-05
		 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 30/289 (10%)
		
		Query: 9    LKDGTGKPVENCTIQLKARRNSATVVVNTVASENPDE-AGRYSMDVEYGQYSVILLVEGF 67
		            + D TG+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 68   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 127
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 128  ETSARNAGISSSKAEASAANADTSAGDALESARQAA-ESAAAAKQSEDASSSSASAAAQK 186
		            ET A N+   S   E +  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 187  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 228
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 229  AQSAEQSRIAAEEAVNRIPTVVGPPGPKGEQGPAGPQGPKGDKGERGDT 277
		             QS   +    E+      + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	1062#JEONG1266_05595	PF06580#Sensor histidine kinase	219	8e-69
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  219 bits (560), Expect = 8e-69
		 Identities = 63/216 (29%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
		
		Query: 343 LGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQA 402
		           L  G     + +       +  +M  ++++  L AQ+NPHF+FNALN I+A+I  D  +A
		Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKA 193
		
		Query: 403 SQLVQYLSTFFRKNLKR-PSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQ 461
		            +++  LS   R +L+   +  V+LADE+  V++YLQ+   +F+ RLQ    I   +   
		Sbjct: 194 REMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDV 253
		
		Query: 462 QLPAFTLQPIVENAIKHGTSQLLDTGRVAISVRREGQHLMLEIEDNAGL-YQPVTNASGL 520
		           Q+P   +Q +VEN IKHG +QL   G++ +   ++   + LE+E+   L  +    ++G 
		Sbjct: 254 QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313
		
		Query: 521 GMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLP 556
		           G+  V +RL+  +G +  I ++ +        + +P
		Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
		
		
	1063#JEONG1266_05600	HTHFIS#FIS bacterial regulatory protein HTH signature.	71	1e-16
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 71.4 bits (175), Expect = 1e-16
		 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
		
		Query: 2   IKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 61
		             +L+ DD+   R  L   L  ++  ++    SNA      +     D++  D+ MP  +
		Sbjct: 4   ATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61
		
		Query: 62  GLEMVGMLDPEHRPYI--VFLTAFD--EYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQ 117
		             +++  +  + RP +  + ++A +    AIKA E+ A+DYL KP D   L   + R   
		Sbjct: 62  AFDLLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
		
		Query: 118 ERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVT--SHEGKE 172
		           E  ++   L  ++Q  +  +   G S       + +A +      + +T  S  GKE
		Sbjct: 121 EPKRRPSKLEDDSQDGMPLV---GRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174
		
		
	1065#JEONG1266_05610	INTIMIN#Intimin signature.	27	0.028
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 27.3 bits (60), Expect = 0.028
		 Identities = 19/94 (20%), Positives = 31/94 (32%)
		
		Query: 36  LNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKL 95
		           +   + AITY  K  K  K  S  ++ F +          KT     AK    +    K 
		Sbjct: 671 VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKS 730
		
		Query: 96  TYTDTYAQENVTIDMEKVDFKALQGISGINVSAE 129
		             +   +   V +   +V+F     I   N+   
		Sbjct: 731 LVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIV 764
		
		
JEONG1266_05680	JEONG1266_05725	Y	Y	N	JEONG1266_05605	JEONG1266_05800
	JEONG1266_05680	-3	15	-3.362329	methionine--tRNA ligase
	JEONG1266_05685	0	26	-6.673643	Fe-S-binding ATPase
	JEONG1266_05690	2	36	-10.015296	hypothetical protein
	JEONG1266_05695	2	33	-9.375982	hypothetical protein
	JEONG1266_05700	2	28	-7.985873	fimbrial assembly protein
	JEONG1266_05705	1	26	-7.321119	fimbrial assembly protein
	JEONG1266_05710	1	25	-6.902722	pilus assembly protein
	JEONG1266_05715	1	21	-7.480540	heavy metal resistance protein
	JEONG1266_05720	1	21	-4.721431	nickel/cobalt efflux protein RcnA
	JEONG1266_05725	2	21	-3.035550	transcriptional repressor RcnR to maintain
	1084#JEONG1266_05710	PF00577#Outer membrane usher protein FimD	714	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  714 bits (1844), Expect = 0.0
		 Identities = 241/843 (28%), Positives = 395/843 (46%), Gaps = 35/843 (4%)
		
		Query: 2   LRMTPLASAI---VALLLGIEAHAAEETFDTHFMMGGMKGEQVTNLRL--DDNQPLPGQY 56
		            R+      +    A        +AE  F+  F+      + V +L    +  +  PG Y
		Sbjct: 21  HRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADD--PQAVADLSRFENGQELPPGTY 78
		
		Query: 57  DIDIYVNKQWRGKYEIIVKDNPHET----CLTREIVKRLGIN-----SDNFARENQCLTF 107
		            +DIY+N  +    ++       E     CLTR  +  +G+N       N   ++ C+  
		Sbjct: 79  RVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPL 138
		
		Query: 108 EQLVQGGSYSWDIGIFRLDLAVPQAWVEELENGYVPPENWERGINAFYTSYYVSQYYSDY 167
		             ++   +   D+G  RL+L +PQA++     GY+PPE W+ GINA   +Y  S      
		Sbjct: 139 TSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQN 198
		
		Query: 168 KASGNSKSTYVRFNSGLNLLGWQLHSDASFSKTDNNP-----GEWKSNTLYLEHGFSQIL 222
		           +  GNS   Y+   SGLN+  W+L  + ++S   ++       +W+    +LE     + 
		Sbjct: 199 RIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLR 258
		
		Query: 223 GTLRIGDMYTSADIFDSVRFTGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGF 282
		             L +GD YT  DIFD + F G +L  D  MLP+S++ F P + GIA+  A VTI+QNG+
		Sbjct: 259 SRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGY 318
		
		Query: 283 VVYQKEVPPGPFSISDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDF 342
		            +Y   VPPGPF+I+D+  AG   DL V++KEADGS   + VPY++VP + + G ++Y  
		Sbjct: 319 DIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSI 378
		
		Query: 343 AAGRSHIEGASKQSD-FVQAGYQYGFNNLLTLYGGTMVANNYYAFTLGTGWNT-RIGAIS 400
		            AG      A ++   F Q+   +G     T+YGGT +A+ Y AF  G G N   +GA+S
		Sbjct: 379 TAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALS 438
		
		Query: 401 VDATKSHSKQDNGDVFDGQSYQIAYNKFLSQTSTRFGLAAWRYSSRDYRTFNDYVWANNK 460
		           VD T+++S   +    DGQS +  YNK L+++ T   L  +RYS+  Y  F D  ++   
		Sbjct: 439 VDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMN 498
		
		Query: 461 DNYRRDKNDVYDI----ADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSG 516
		                 ++ V  +     DYY   + ++      ++Q L     ++ LS   + YWG S 
		Sbjct: 499 GYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSN 557
		
		Query: 517 SSKDYQLSYSNNWRRISYTLAASQAYDENHAE-EKRFNIFISIPFD--WGDDVTTPRRQI 573
		             + +Q   +  +  I++TL+ S   +      ++   + ++IPF      D  +  R  
		Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617
		
		Query: 574 YMSNSTTFDDQGFASNNTGLSGTVGNRDQFNYGINLSHQHQGN---ETTAGANLTWTAPA 630
		             S S + D  G  +N  G+ GT+   +  +Y +   +   G+    +T  A L +    
		Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677
		
		Query: 631 ATVNGSYSQSSTYRQVGASVSGGLVAWSGGVNLANRLSETFAVMHAPGIKDAYVNGQKYR 690
		              N  YS S   +Q+   VSGG++A + GV L   L++T  ++ APG KDA V  Q   
		Sbjct: 678 GNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGV 737
		
		Query: 691 TTNCNGVVVYDGLTPYRENHLMMDVSQSDSETELRGNRKMTAPYRGAVVLVDFDTDQRKP 750
		            T+  G  V    T YREN + +D +      +L        P RGA+V  +F   +   
		Sbjct: 738 RTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKA-RVGI 796
		
		Query: 751 WFIKALRSDGQPLTFGYEVNDMHGHNIGVVGQGSQIFIRTNEIPPAVNVAIDKQQGLSCT 810
		             +  L  + +PL FG  V      + G+V    Q+++    +   V V   +++   C 
		Sbjct: 797 KLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCV 856
		
		Query: 811 ITF 813
		             +
		Sbjct: 857 ANY 859
		
		
	1086#JEONG1266_05720	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	28	0.008
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		          family signature.
		          Length = 607
		
		 Score = 27.9 bits (62), Expect = 0.008
		 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
		
		Query: 6  KMLLGALLLVTSAAWAAPATAGSTNTSGISKYE-LSSFIADF 46
		          ++L G LLL++S +WA            ++K E L   + DF
		Sbjct: 11 RVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDF 52
		
		
JEONG1266_05790	JEONG1266_06075	Y	Y	Y	JEONG1266_05715	JEONG1266_05915
	JEONG1266_05790	3	19	-2.237511	D-tagatose-bisphosphate aldolase, class II,
	JEONG1266_05795	3	19	-3.263772	PTS galactitol transporter subunit IIA
	JEONG1266_05800	3	20	-3.197578	PTS galactitol transporter subunit IIB
	JEONG1266_05805	3	20	-3.197764	PTS galactitol transporter subunit IIC
	JEONG1266_05810	3	19	-3.028869	galactitol-1-phosphate 5-dehydrogenase
	JEONG1266_05815	-1	25	-4.871111	transcriptional regulator
	JEONG1266_05820	-1	26	-5.593899	lipid kinase YegS
	JEONG1266_05830	0	32	-7.437611	hypothetical protein
	JEONG1266_05835	0	30	-6.331325	hypothetical protein
	JEONG1266_05840	0	28	-7.257578	integrase
	JEONG1266_05845	0	30	-6.367640	transcriptional regulator
	JEONG1266_05850	0	30	-5.932951	hypothetical protein
	JEONG1266_05855	0	24	-2.074814	replication protein B
	JEONG1266_05860	0	27	-5.483483	hypothetical protein
	JEONG1266_05865	1	29	-7.142201	hypothetical protein
	JEONG1266_05870	2	35	-10.413040	hypothetical protein
	JEONG1266_05875	2	30	-9.017762	hypothetical protein
	JEONG1266_05880	0	22	-6.182516	replication protein A
	JEONG1266_05885	1	21	-7.202341	hypothetical protein
	JEONG1266_05890	0	18	-3.996391	hypothetical protein
	JEONG1266_05895	-1	20	-1.570619	exonuclease SbcC
	JEONG1266_05900	1	36	4.877636	phage portal protein
	JEONG1266_05905	2	37	5.743809	oxidoreductase
	JEONG1266_05910	2	35	5.549139	GPO family capsid scaffolding protein
	JEONG1266_05915	2	36	6.417188	phage major capsid protein, P2 family
	JEONG1266_05920	1	36	7.860751	terminase
	JEONG1266_05925	1	35	7.001516	head completion/stabilization protein
	JEONG1266_05930	2	31	6.772106	phage tail protein
	JEONG1266_05935	1	31	5.891152	holin
	JEONG1266_05940	0	30	5.554556	lysozyme
	JEONG1266_05945	2	28	5.914062	protein lysA
	JEONG1266_05950	3	28	5.424158	protein lysB
	JEONG1266_05955	3	27	5.455849	phage lysis protein
	JEONG1266_05960	2	26	5.248112	phage tail protein
	JEONG1266_05965	1	20	3.839522	phage virion morphogenesis protein
	JEONG1266_05970	2	18	2.875017	baseplate assembly protein
	JEONG1266_05975	1	16	1.124569	baseplate assembly protein
	JEONG1266_05980	0	18	0.395418	baseplate assembly protein
	JEONG1266_05985	0	20	-0.795721	phage tail protein I
	JEONG1266_05990	-1	15	-0.000512	phage tail protein
	JEONG1266_05995	-1	16	0.769000	tail fiber assembly protein
	JEONG1266_06000	-2	17	2.084337	phage tail protein
	JEONG1266_06005	-1	20	3.165318	phage tail protein
	JEONG1266_06010	-2	23	4.420423	DNA-invertase
	JEONG1266_06015	-1	22	4.654357	phage tail protein
	JEONG1266_06020	-1	23	4.258272	phage major tail tube protein
	JEONG1266_06025	-2	20	3.707136	hypothetical protein
	JEONG1266_06030	-2	19	3.258828	phage tail protein
	JEONG1266_06035	-3	18	3.176828	phage tail tape measure protein
	JEONG1266_06040	-3	15	2.354889	phage tail protein
	JEONG1266_06045	-2	16	2.631319	hypothetical protein
	JEONG1266_06050	-2	18	3.406622	U32 family peptidase
	JEONG1266_06055	-2	19	3.998844	hypothetical protein
	JEONG1266_06060	-2	18	4.162320	two-component system response regulator BaeR
	JEONG1266_06065	-3	18	4.071572	two-component system sensor histidine kinase
	JEONG1266_06070	-3	17	3.876386	multidrug transporter subunit MdtD
	JEONG1266_06075	-3	14	3.211846	multidrug transporter subunit MdtC
	1105#JEONG1266_05815	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	34	7e-04
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 33.9 bits (77), Expect = 7e-04
		 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
		
		Query: 156 AQGCENKNVIIIGAGT-IGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE 214
		           A+G E K   I GA   IG    +   + GA  + A+D + EKL    S    +  ++  
		Sbjct: 3   AKGIEGKIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEA 61
		
		Query: 215 MSAPQMQSVLRELRFNQLILETAGVPQTVELA 246
		             A    S   +    ++  E   +   V +A
		Sbjct: 62  FPADVRDSAAIDEITARIEREMGPIDILVNVA 93
		
		
	1112#JEONG1266_05850	PF03309#Bvg accessory factor	27	0.012
		>PF03309#Bvg accessory factor
		          Length = 271
		
		 Score = 26.7 bits (59), Expect = 0.012
		 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
		
		Query: 36  KLPVIEITDPQSVSGR-------AGEYWVYL 59
		            L  +E+T P+SV G+       AG  + + 
		Sbjct: 169 ALRRVELTRPRSVIGKNTVECMQAGAVFGFA 199
		
		
	1113#JEONG1266_05855	SECA#SecA protein signature.	28	0.015
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 28.3 bits (63), Expect = 0.015
		 Identities = 11/72 (15%), Positives = 26/72 (36%)
		
		Query: 9   VEKQPAAMRRIIGKHLAVPRWQDTCDYYNQMMERERLTVCFHAQLKQRHATMRFEEMNDV 68
		           +      ++      L +  W D     ++   RER+        +++   +  E M   
		Sbjct: 703 IPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHF 762
		
		Query: 69  ERERLVCAIDEL 80
		           E+  ++  +D L
		Sbjct: 763 EKGVMLQTLDSL 774
		
		
	1126#JEONG1266_05920	PF06872#EspG protein	29	0.022
		>PF06872#EspG protein
		          Length = 398
		
		 Score = 28.5 bits (63), Expect = 0.022
		 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
		
		Query: 122 PPYMFTEEVALAAMRAHAAGESVDTRLLTETLALTATADMPDEVRAKLHKITGLFLRDAG 181
		           P  M T    ++   A+ A  S+D       +++T +++    V +     TG+ +    
		Sbjct: 298 PALMLTHV-RISQASAYNAQRSLDMPNACINISITQSSEGSIHVTSH----TGVLIMAPE 352
		
		Query: 182 DAAGALAHLQRATQLDCQAGVKKEIERLERELKPK 216
		           D    L  L   T  +   GVK E   + R LK K
		Sbjct: 353 DRPNQLGMLTNRTSYEVPPGVKCEPNEMARMLKAK 387
		
		
	1149#JEONG1266_06035	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	33	0.005
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 32.9 bits (75), Expect = 0.005
		 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
		
		Query: 8   QVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRELNGQASRIEGFRKTSAQLAVTGH 67
		            VLL+     +    +    ++S     R  Q   + L+      +             +
		Sbjct: 122 DVLLKLTALGAE---ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178
		
		Query: 68  ALEKARQEAEALATQFKNTERPTRAQAKV-LESAKRAAEDLQAKYNRLTDSVKRQQRELA 126
		             E+      +L  +  +T +  + Q ++ L+  +     + A+ NR  +  + ++  L 
		Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238
		
		Query: 127 AVGINTRNLAHDELGLKNRISETTAQLNRQRDALARVSAQQAKLNAVKQRYQA 179
		                  +L H +   K+ + E   +     + L    +Q  ++ +     + 
		Sbjct: 239 DF----SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287
		
		
	1154#JEONG1266_06060	HTHFIS#FIS bacterial regulatory protein HTH signature.	76	4e-18
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 76.0 bits (187), Expect = 4e-18
		 Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
		
		Query: 11  PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGL 70
		             IL+ +D+  +  +L   L  A Y   + S+   +  ++     DL++ D+++P  +  
		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 71  TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129
		            L   I+    D+P+++++A+   +  +   E GA DY+ KP+   E++  +   L   K
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
		
		Query: 130 PQRELQQQDAESPLII 145
		            +    + D++  + +
		Sbjct: 124 RRPSKLEDDSQDGMPL 139
		
		
	1155#JEONG1266_06065	BCTERIALGSPF#Bacterial general secretion pathway protein F signa...	31	0.009
		>BCTERIALGSPF#Bacterial general secretion pathway protein F
		           signature.
		          Length = 408
		
		 Score = 31.3 bits (71), Expect = 0.009
		 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
		
		Query: 173 LATLLAALATFLLA-------------RGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDE 219
		           LATL+AA      A               L+A V+  V   H LA      +  P S + 
		Sbjct: 77  LATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD---AMKCFPGSFER 133
		
		Query: 220 L-----------GKLAQDFNQLASTLEKNQQMR 241
		           L           G L    N+LA   E+ QQMR
		Sbjct: 134 LYCAMVAAGETSGHLDAVLNRLADYTEQRQQMR 166
		
		
	1156#JEONG1266_06070	TCRTETB#Tetracycline resistance protein TetB signature.	126	8e-34
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score =  126 bits (317), Expect = 8e-34
		 Identities = 97/429 (22%), Positives = 188/429 (43%), Gaps = 23/429 (5%)
		
		Query: 20  FMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFF 79
		           F   L+  ++N +LP +A    + P   + V  +++LT ++     G L+D++G++ +  
		Sbjct: 24  FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83
		
		Query: 80  TAIVLFTLGSLFCALSGTLNELL-LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTF 138
		             I++   GS+   +  +   LL +AR +QG G A    +  + V + +P+E    A   
		Sbjct: 84  FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143
		
		Query: 139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM-LMPNYTMQTRRFDL 197
		           +     +G  +GPA+GG++  Y   HW +L+ IP+  I  +  LM L+         FD+
		Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201
		
		Query: 198 SGFLLLAVGMAVLTLALDGSKGTGLSPLAITGLVAVGVVALVLYLLHARNNNRALFSLKL 257
		            G +L++VG+    L          +       + V V++ ++++ H R          L
		Sbjct: 202 KGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252
		
		Query: 258 FRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRI 316
		            +   F +G+               M P  ++     S    G +++ P  +  +    I
		Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312
		
		Query: 317 VVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALL----GWYYVLPFVLFLQGMVNSTRFS 372
		              +V+R G   VL    +G++ +++ F+T + L     W+  +  V  L G+  S   +
		Sbjct: 313 GGILVDRRGPLYVL---NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL--SFTKT 367
		
		Query: 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSSTTQTVF 432
		            ++T+    L    A +G SLL+    LS   G+ I G LL +       +     Q+ +
		Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTY 427
		
		Query: 433 MYTWLSMAF 441
		           +Y+ L + F
		Sbjct: 428 LYSNLLLLF 436
		
		
	1157#JEONG1266_06075	ACRIFLAVINRP#Acriflavin resistance protein family signature.	922	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score =  922 bits (2384), Expect = 0.0
		 Identities = 289/1035 (27%), Positives = 507/1035 (48%), Gaps = 36/1035 (3%)
		
		Query: 6    LFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65
		             FI RP+   +L++ + + G L    LPVA  P +  P + VSA+ PGA  +T+  +V  
		Sbjct: 4    FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63
		
		Query: 66   PLERSLGRIAGVSEMTSSS-SLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMP 124
		             +E+++  I  +  M+S+S S GS  I L F    D + A   VQ  +  A  LLP  + 
		Sbjct: 64   VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123
		
		Query: 125  SRPTYRKANPSDAPIMILTLTSDT--YSQGELYDFASTQLAPTISQIDGVGDVDVGGSSL 182
		             +        S + +M+    SD    +Q ++ D+ ++ +  T+S+++GVGDV + G+  
		Sbjct: 124  -QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182
		
		Query: 183  PAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG------ALEDGTHRWQIQTNDELK 236
		             A+R+ L+   L    ++  DV   +   N +   G      AL        I      K
		Sbjct: 183  -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241
		
		Query: 237  TAAEYQPLIIHYN-NGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQ 295
		               E+  + +  N +G  VRL DVA V    ++       N KPA  L I+    AN + 
		Sbjct: 242  NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301
		
		Query: 296  TVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRS 355
		            T  +I+AKL ELQ   P  + +    D +P ++ S+ EV +TL  ++ LV LV++LFL++
		Sbjct: 302  TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361
		
		Query: 356  GRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHL- 414
		             RAT+IP +AVPV L+GTFA +   G+S+N L++  + +A G +VDDAIVV+EN+ R + 
		Sbjct: 362  MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421
		
		Query: 415  EAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGIS 474
		            E  + P +A  +   ++   ++ +++ L AVF+P+   GG  G + R+F++T+  A+ +S
		Sbjct: 422  EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481
		
		Query: 475  LLVSLTLTPMMCGWMLKASKPREQKRLRGFG----RMLVALQQGYGKSLKWVLNHTRLVG 530
		            +LV+L LTP +C  +LK       +   GF              Y  S+  +L  T    
		Sbjct: 482  VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541
		
		Query: 531  MVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQ----AMRGKLQDFMKII 586
		            ++    +A  + L++ +P +F PE+D GV +  IQ     + +     +      ++K  
		Sbjct: 542  LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601
		
		Query: 587  RD-DPAVDNVTGFT-GGSRVNSGMMFITLKPRDERS---ETAQQIIDRLRVKLAKEPGAN 641
		            +    +V  V GF+  G   N+GM F++LKP +ER+    +A+ +I R +++L K     
		Sbjct: 602  KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661
		
		Query: 642  LFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKKLATL-----PELADVNSD 696
		            +    +  I   G  +   ++   L D      +   + R +L  +       L  V  +
		Sbjct: 662  VIPFNMPAIVELGTATGFDFE---LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718
		
		Query: 697  QQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRY 756
		              ++ A+  L  D++    LG+ +   N  ++ A G   ++         K+ ++ D ++
		Sbjct: 719  GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778
		
		Query: 757  TQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSD 816
		                  ++K++V +  G+ +P S F           +       +  I      G S  D
		Sbjct: 779  RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838
		
		Query: 817  ASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVH 876
		            A A ++   ++L  P+ +   + G +   + + N    L+  +   V++ L  LYES+  
		Sbjct: 839  AMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896
		
		Query: 877  PLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGN 936
		            P++++  +P   VG LLA  LFN    +  ++G++  IG+  KNAI++V+FA +      
		Sbjct: 897  PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956
		
		Query: 937  LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLL 996
		                EA   A  +R RPI+MT+LA + G LPL +S G GS  +  +GI ++GG+V + LL
		Sbjct: 957  KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016
		
		Query: 997  TLYTTPVVYLFFDRL 1011
		             ++  PV ++   R 
		Sbjct: 1017 AIFFVPVFFVVIRRC 1031
		
		
JEONG1266_06195	JEONG1266_06360	Y	Y	N	JEONG1266_06120	JEONG1266_28135
	JEONG1266_06195	-1	22	3.287720	GDP-mannose 4,6-dehydratase
	JEONG1266_06200	-1	25	3.870306	GDP-fucose synthetase
	JEONG1266_06205	0	24	3.794278	GDP-mannose mannosyl hydrolase
	JEONG1266_06210	0	25	3.404610	colanic acid biosynthesis glycosyltransferase
	JEONG1266_06215	0	24	3.221695	mannose-1-phosphate
	JEONG1266_06220	0	25	3.095135	phosphomannomutase
	JEONG1266_06225	-1	21	1.620558	undecaprenyl-phosphate glucose
	JEONG1266_06230	-1	17	0.311052	colanic acid exporter
	JEONG1266_06235	-2	15	-0.284987	colanic acid biosynthesis pyruvyl transferase
	JEONG1266_06240	-3	16	-3.441441	colanic acid biosynthesis glycosyltransferase
	JEONG1266_06245	-2	21	-7.949336	colanic acid biosynthesis protein WcaM
	JEONG1266_06250	0	30	-11.856966	UDP-N-acetylglucosamine 4-epimerase
	JEONG1266_06260	4	51	-17.288069	GalU regulator GalF
	JEONG1266_06265	7	60	-20.107083	glycosyl transferase
	JEONG1266_06270	7	60	-18.649355	polymerase
	JEONG1266_06275	5	59	-17.272026	glycosyl transferase
	JEONG1266_06280	4	58	-16.459317	flippase
	JEONG1266_06285	4	56	-15.058414	perosamine synthetase
	JEONG1266_06290	0	40	-11.146559	glycosyl transferase
	JEONG1266_06295	0	35	-9.600744	GDP-mannose 4,6-dehydratase
	JEONG1266_06300	0	34	-9.707686	GDP-fucose synthetase
	JEONG1266_06305	0	24	-7.155255	GDP-mannose mannosyl hydrolase
	JEONG1266_06310	0	22	-6.838710	mannose-1-phosphate
	JEONG1266_06315	-1	16	-5.012005	phosphomannomutase
	JEONG1266_28135	0	19	-6.144273	acetyltransferase
	JEONG1266_06325	-1	17	-4.314787	phosphogluconate dehydrogenase
	JEONG1266_06330	-2	17	-1.955047	UDP-glucose 6-dehydrogenase
	JEONG1266_06335	-3	18	-1.554478	LPS O-antigen chain length determinant protein
	JEONG1266_06340	-2	19	0.785351	bifunctional phosphoribosyl-AMP
	JEONG1266_06345	-1	26	2.625018	imidazole glycerol phosphate synthase subunit
	JEONG1266_06350	-1	23	3.449340	1-(5-phosphoribosyl)-5-[(5-
	JEONG1266_06355	-2	23	3.773388	imidazole glycerol phosphate synthase, glutamine
	JEONG1266_06360	-2	19	3.215950	bifunctional imidazole glycerol-phosphate
	1181#JEONG1266_06200	NUCEPIMERASE#Nucleotide sugar epimerase signature.	104	1e-27
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score =  104 bits (262), Expect = 1e-27
		 Identities = 76/353 (21%), Positives = 122/353 (34%), Gaps = 42/353 (11%)
		
		Query: 6   LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH--------TCNPK 57
		           L+TG  G  G ++++ LLE G++V GI     + N       Y D             P 
		Sbjct: 4   LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLND------YYDVSLKQARLELLAQPG 53
		
		Query: 58  FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 117
		           F  H  DL+D   +T +      + V+       V  S E+P   AD +  G L +LE  
		Sbjct: 54  FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113
		
		Query: 118 RFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKLYAYWITVNYRESYG 176
		           R   ++       AS+S +YGL +++P        +P S YA  K     +   Y   YG
		Sbjct: 114 RHNKIQ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170
		
		Query: 177 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 236
		           + A     F    P         K T+A+     G    +Y       RD+ +  D  + 
		Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLE---GKSIDVY-NYGKMKRDFTYIDDIAEA 226
		
		Query: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 296
		              +       D                     +G       +   E    +     DA 
		Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG------NSSPVELMDYIQAL-EDAL 279
		
		Query: 297 GVKPGDVIIAVDPRY--FRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMV 347
		           G++               +P +V     D    +E +G+ PE T+++ V   V
		Sbjct: 280 GIE-------AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFV 325
		
		
	1182#JEONG1266_06205	NUCEPIMERASE#Nucleotide sugar epimerase signature.	87	1e-21
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 87.1 bits (216), Expect = 1e-21
		 Identities = 66/344 (19%), Positives = 132/344 (38%), Gaps = 47/344 (13%)
		
		Query: 5   RIFIAGHRGMVGSAIRRQLEQRG-------------DVEL------VLRTRD----ELNL 41
		           +  + G  G +G  + ++L + G             DV L      +L        +++L
		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61
		
		Query: 42  LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 101
		            D   + D FAS   ++V+++  +   +  +   P  +   N+    NI+     N +  
		Sbjct: 62  ADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120
		
		Query: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
		           LL+  SS +Y    K P +          P +  YA  K A   +  +Y+  YG     +
		Sbjct: 121 LLYASSSSVYGLNRKMPFSTD---DSVDHPVS-LYAATKKANELMAHTYSHLYGLPATGL 176
		
		Query: 162 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAAS 221
		               +YGP     P         L +F +A  +    + V+  G   R+F ++DD+A A 
		Sbjct: 177 RFFTVYGPWGR--PD------MALFKFTKAMLEGKS-IDVYNYGKMKRDFTYIDDIAEAI 227
		
		Query: 222 IHVMELAH----EVWLENTQPMLSH-----INVGTGVDCTIRELAQTIAKVVGYKGRVVF 272
		           I + ++      +  +E   P  S       N+G      + +  Q +   +G + +   
		Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287
		
		Query: 273 DASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLEN 315
		              +P        D   L++ +G+  E +++ G+ +   W+ + 
		Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
		
		
	1192#JEONG1266_06255	NUCEPIMERASE#Nucleotide sugar epimerase signature.	94	5e-24
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 93.7 bits (233), Expect = 5e-24
		 Identities = 70/334 (20%), Positives = 126/334 (37%), Gaps = 62/334 (18%)
		
		Query: 4   NVLLIGASGFVGT----RLLE----------------TAIADFNIKNLDKQQSHFYPEIT 43
		             L+ GA+GF+G     RLLE                 ++    ++ L +    F+    
		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK--- 58
		
		Query: 44  QIGDVRDQQALDQALA--GFDTVVLLAAEH--RDDVSPTSLYYDVNVQGTRNVLAAMEKN 99
		              D+ D++ +    A   F+ V +       R  +     Y D N+ G  N+L     N
		Sbjct: 59  --IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116
		
		Query: 100 GVKNIIFTSSVAVYGLNKHNP-DENHPHD-PFNHYGKSKWQAEEVLREWYNKA---PTER 154
		            ++++++ SS +VYGLN+  P   +   D P + Y  +K +A E++   Y+     P   
		Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATK-KANELMAHTYSHLYGLPA-- 173
		
		Query: 155 SLTIIRPTVIFGERNRGN--VYNLLKQIAGGKFMMV-GAGTNYKSMAYVGNIVEFIKYKL 211
		             T +R   ++G   R +  ++   K +  GK + V   G   +   Y+ +I E I    
		Sbjct: 174 --TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231
		
		Query: 212 KNVA-----------------AGYEVYNYVDKPDLNMNQLVAEVEQSLNKKIPSMHLPYP 254
		             +                  A Y VYN  +   + +   +  +E +L  +     LP  
		Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291
		
		Query: 255 LGMLGGYCFDI--LSKITGKKYAVS-SVRVKKFC 285
		            G +     D   L ++ G     +    VK F 
		Sbjct: 292 PGDVLETSADTKALYEVIGFTPETTVKDGVKNFV 325
		
		
	1200#JEONG1266_06295	NUCEPIMERASE#Nucleotide sugar epimerase signature.	105	8e-28
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score =  105 bits (263), Expect = 8e-28
		 Identities = 73/353 (20%), Positives = 121/353 (34%), Gaps = 42/353 (11%)
		
		Query: 6   LITGVTGQDGSYLAEFLLDKGYEVHGIKRRASSFNTERIDHIYQDPH--------GSNPN 57
		           L+TG  G  G ++++ LL+ G++V GI     + N       Y D           + P 
		Sbjct: 4   LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLND------YYDVSLKQARLELLAQPG 53
		
		Query: 58  FHLHYGDLTDSSNLTRILKEVQPDEVYNLAAMSHVAVSFESPEYTADVDAIGTLRLLEAI 117
		           F  H  DL D   +T +      + V+       V  S E+P   AD +  G L +LE  
		Sbjct: 54  FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113
		
		Query: 118 RFLGLENKTRFYQASTSELYGLVQEIPQKESTPF-YPRSPYAVAKLYAYWITVNYRESYG 176
		           R   ++       AS+S +YGL +++P        +P S YA  K     +   Y   YG
		Sbjct: 114 RHNKIQ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170
		
		Query: 177 IYACNGILFNHESPRRGETFVTRKITRGLANIAQGLESCLYLGNMDSLRDWGHAKDYVRM 236
		           + A     F    P         K T+    + +G    +Y       RD+ +  D    
		Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTK---AMLEGKSIDVY-NYGKMKRDFTYIDDIAEA 226
		
		Query: 237 QWLMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKMSFVGKGIEEKGIVDSVEGQDAP 296
		              +       D                     +G         +E    + ++E  DA 
		Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG-----NSSPVELMDYIQALE--DAL 279
		
		Query: 297 GVKPGDVIVAVDPRY--FRPAEVDTLLGDPSKANLKLGWRPEITLAEMISEMV 347
		           G++               +P +V     D       +G+ PE T+ + +   V
		Sbjct: 280 GIE-------AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFV 325
		
		
	1201#JEONG1266_06300	NUCEPIMERASE#Nucleotide sugar epimerase signature.	94	5e-24
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 93.7 bits (233), Expect = 5e-24
		 Identities = 64/347 (18%), Positives = 129/347 (37%), Gaps = 53/347 (15%)
		
		Query: 5   RIFIAGHQGMVGSAITRRLKQRD-------------DVEL------VLRTRD----ELNL 41
		           +  + G  G +G  +++RL +               DV L      +L        +++L
		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61
		
		Query: 42  LDSSAVLDFFSSQKIDQVYLAAAKVGGILANSSYPADFIYENIMIEANVIHAAHKNNVNK 101
		            D   + D F+S   ++V+++  +   +  +   P  +   N+    N++     N +  
		Sbjct: 62  ADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120
		
		Query: 102 LLFLGSSCIYPKLAHQPIMEDELLQGKLEPTNEP---YAIAKIAGIKLCESYNRQFGRDY 158
		           LL+  SS +Y      P   D       +  + P   YA  K A   +  +Y+  +G   
		Sbjct: 121 LLYASSSSVYGLNRKMPFSTD-------DSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173
		
		Query: 159 RSVMPTNLYGPNDNFHPSNSHVIPALLRRFHDAVENNSPNVVVWGSGTPKREFLHVDDMA 218
		             +    +YGP     P         L +F  A+      + V+  G  KR+F ++DD+A
		Sbjct: 174 TGLRFFTVYGPWGR--PD------MALFKFTKAMLEGKS-IDVYNYGKMKRDFTYIDDIA 224
		
		Query: 219 SASIYVMEMPYDIWQKNTK---------VMLSHINIGTGIDCTICELAETIAKVVGYKGH 269
		            A I + ++      + T                NIG      + +  + +   +G +  
		Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284
		
		Query: 270 ITFDTTKPDGAPRKLLDVTLLHQ-LGWNHKITLHKGLENTYNWFLEN 315
		                 +P        D   L++ +G+  + T+  G++N  NW+ + 
		Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
		
		
JEONG1266_06415	JEONG1266_07095	Y	Y	Y	JEONG1266_06340	JEONG1266_06545
	JEONG1266_06415	5	32	-4.222328	AlpA family transcriptional regulator
	JEONG1266_06420	4	28	-4.574692	hypothetical protein
	JEONG1266_06425	5	29	-4.533181	hypothetical protein
	JEONG1266_06430	3	26	-4.342097	hypothetical protein
	JEONG1266_06435	0	25	-3.015303	hypothetical protein
	JEONG1266_06445	0	24	-2.021972	hypothetical protein
	JEONG1266_06450	2	26	-0.527448	hypothetical protein
	JEONG1266_06455	3	26	-1.195692	cruciferin
	JEONG1266_06460	4	27	-2.822334	phage recombination protein Bet
	JEONG1266_06470	3	28	-4.847537	host-nuclease inhibitor protein Gam
	JEONG1266_06475	4	37	-7.650115	protein kil
	JEONG1266_06480	4	38	-9.224284	hypothetical protein
	JEONG1266_06485	5	35	-8.139192	hypothetical protein
	JEONG1266_06490	5	35	-6.411219	antitermination protein N
	JEONG1266_06495	6	36	-5.802240	hypothetical protein
	JEONG1266_06500	5	35	-6.046740	hypothetical protein
	JEONG1266_06505	3	35	-5.096398	hypothetical protein
	JEONG1266_06510	3	32	-2.835361	phage repressor
	JEONG1266_06515	2	30	-2.442700	transcriptional regulator
	JEONG1266_06520	2	31	-1.830920	hypothetical protein
	JEONG1266_06525	2	29	-1.304335	replication of DNA
	JEONG1266_06530	3	29	-0.737348	DNA helicase
	JEONG1266_06535	4	31	-0.505114	hypothetical protein
	JEONG1266_06540	3	29	-3.049186	ninB protein
	JEONG1266_06545	2	32	-3.110935	ninB protein
	JEONG1266_06550	2	32	-3.586265	phage N-6-adenine-methyltransferase
	JEONG1266_06555	3	32	-4.167311	protein ninE
	JEONG1266_06560	2	28	-5.221205	anti-termination protein
	JEONG1266_06565	2	26	-4.984193	antirepressor
	JEONG1266_06570	0	26	-5.021575	DNA-binding protein
	JEONG1266_06575	-1	25	-5.529009	protein ninG
	JEONG1266_06580	0	26	-6.175846	serine/threonine protein phosphatase
	JEONG1266_06585	2	22	-2.071667	antiterminator
	JEONG1266_06590	3	25	-1.247257	***Shiga toxin subunit A
	JEONG1266_06610	4	26	-0.775851	Shiga toxin subunit B
	JEONG1266_06615	4	27	0.835005	anti-adapter protein IraM
	JEONG1266_06620	4	25	1.611392	hypothetical protein
	JEONG1266_06630	4	27	-1.024346	hypothetical protein
	JEONG1266_06635	5	26	-0.812950	hypothetical protein
	JEONG1266_06640	3	27	-1.944981	holin
	JEONG1266_06645	3	28	-0.736231	lysozyme
	JEONG1266_06650	2	25	0.092013	endopeptidase
	JEONG1266_06655	3	22	3.090461	DNA-binding protein
	JEONG1266_06660	4	27	5.872699	hypothetical protein
	JEONG1266_06665	5	29	6.046648	hypothetical protein
	JEONG1266_06670	5	30	5.961892	HNH nuclease
	JEONG1266_06675	4	31	5.953844	terminase
	JEONG1266_06680	6	31	6.188449	terminase
	JEONG1266_06685	6	31	6.191936	phage capsid protein
	JEONG1266_06690	6	31	5.319476	hypothetical protein
	JEONG1266_06695	6	29	4.735697	phage portal protein
	JEONG1266_06700	8	31	5.072776	DNA-packaging protein
	JEONG1266_06705	7	32	5.488683	head-tail adaptor protein
	JEONG1266_06710	4	31	5.566402	hypothetical protein
	JEONG1266_06715	5	33	5.414527	hypothetical protein
	JEONG1266_06720	4	32	5.124274	phage tail protein
	JEONG1266_06725	3	31	4.771263	phage tail protein
	JEONG1266_06730	2	30	4.381260	phage tail protein
	JEONG1266_06735	1	25	2.463455	phage tail tape measure protein
	JEONG1266_06740	1	22	0.119268	phage tail protein
	JEONG1266_06745	0	22	1.295441	DNA-binding protein
	JEONG1266_06750	4	25	3.382983	transcriptional regulator
	JEONG1266_06755	4	26	4.138031	antirepressor
	JEONG1266_06760	4	27	5.087457	phage tail protein
	JEONG1266_06765	6	31	6.333207	phage tail protein
	JEONG1266_06770	4	27	3.994993	phage tail protein
	JEONG1266_06775	3	24	1.737388	enterobacterial Ail/Lom family protein
	JEONG1266_06780	1	28	-2.368487	phage tail protein
	JEONG1266_06785	2	28	-3.345676	phage tail protein
	JEONG1266_06790	1	30	-7.813201	secretion protein EspS
	JEONG1266_06795	-1	24	-6.521372	hypothetical protein
	JEONG1266_06800	-1	16	-4.929206	hypothetical protein
	JEONG1266_06805	-2	14	-2.584493	D-alanyl-D-alanine carboxypeptidase
	JEONG1266_06810	-1	13	-2.194870	DNA gyrase inhibitor
	JEONG1266_06815	0	14	-2.176065	hypothetical protein
	JEONG1266_06820	0	14	-1.286462	hypothetical protein
	JEONG1266_06825	3	26	0.103132	hypothetical protein
	JEONG1266_06830	7	26	1.204835	hypothetical protein
	JEONG1266_06835	8	32	3.199097	hypothetical protein
	JEONG1266_06840	7	29	3.234713	toxin of the YeeV-YeeU toxin-antitoxin system
	JEONG1266_06845	6	31	4.285023	antitoxin
	JEONG1266_06850	5	30	2.413800	hypothetical protein
	JEONG1266_06855	5	26	0.220553	hypothetical protein
	JEONG1266_06860	3	23	0.947850	restriction endonuclease
	JEONG1266_06865	2	22	0.716879	hypothetical protein
	JEONG1266_06870	2	23	0.613659	hypothetical protein
	JEONG1266_06875	3	23	-2.437213	hypothetical protein
	JEONG1266_06880	2	22	-1.632129	phospholipase
	JEONG1266_06885	3	22	-0.611607	chemotaxis protein
	JEONG1266_06890	3	23	-1.665437	vimentin yjdA
	JEONG1266_06900	2	20	0.221519	ligand-gated channel
	JEONG1266_28140	2	23	3.995582	transposase
	JEONG1266_28145	2	22	3.414639	transposase
	JEONG1266_06915	1	20	3.284059	hypothetical protein
	JEONG1266_28150	1	19	3.187678	transposase
	JEONG1266_28155	1	22	0.635262	isocitrate lyase
	JEONG1266_28160	1	26	-0.474531	transposase
	JEONG1266_06935	0	26	-1.117601	bifunctional adenosylcobinamide
	JEONG1266_06940	0	26	-1.334519	adenosylcobinamide-GDP ribazoletransferase
	JEONG1266_06945	-1	28	-2.944181	nicotinate-nucleotide--dimethylbenzimidazole
	JEONG1266_06950	-2	26	-3.273516	L,D-transpeptidase
	JEONG1266_06960	-2	25	-3.086821	*nitrogen assimilation transcriptional regulator
	JEONG1266_06965	-2	28	-4.603656	transcriptional regulator Cbl
	JEONG1266_06975	-1	19	-2.855110	*FMN/FAD transporter
	JEONG1266_06985	-2	19	-3.126629	*hypothetical protein
	JEONG1266_06990	-2	18	-3.046773	AMP nucleosidase
	JEONG1266_06995	-1	19	-3.309203	shikimate transporter
	JEONG1266_07000	-1	18	-3.330418	hypothetical protein
	JEONG1266_07005	0	17	-2.657849	inverse autotransporter adhesin-like protein
	JEONG1266_07015	1	22	-5.144146	*DgsA anti-repressor MtfA
	JEONG1266_07025	1	21	-4.951529	*integrase
	JEONG1266_07030	1	23	-4.768700	hypothetical protein
	JEONG1266_07035	3	24	-4.542209	exonuclease
	JEONG1266_07040	8	30	-6.113797	hypothetical protein
	JEONG1266_07045	3	28	-2.438153	cell division inhibitor
	JEONG1266_07050	3	28	-0.339287	hypothetical protein
	JEONG1266_28165	2	27	-0.005853	XRE family transcriptional regulator
	JEONG1266_07060	1	26	1.223981	cell division protein
	JEONG1266_07065	2	26	1.317276	Rha family transcriptional regulator
	JEONG1266_07070	1	29	0.462550	phage replisome organizer
	JEONG1266_07075	1	30	-1.869414	replication protein
	JEONG1266_07080	2	29	-3.818005	hypothetical protein
	JEONG1266_07085	4	32	-5.087229	hypothetical protein
	JEONG1266_07090	3	30	-3.690300	eae-like protein
	JEONG1266_07095	4	28	-2.975433	hypothetical protein
	1226#JEONG1266_06430	PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis pr...	33	2e-04
		>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis
		           protein F (TcpF)
		          Length = 338
		
		 Score = 32.7 bits (74), Expect = 2e-04
		 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
		
		Query: 66  DIWVFSPSRGVLDGLQWDGSMFTDDEY--QFVIHDATHWMRKVYPAA 110
		            ++  S +  + +G +W  +MF++  Y  Q ++        K+Y  A
		Sbjct: 287 KLYNVS-TNDMRNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKA 332
		
		
	1235#JEONG1266_06485	UREASE#Urea amidohydrolase (urease) protein signature.	29	0.006
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 28.6 bits (64), Expect = 0.006
		 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
		
		Query: 57  IMLAQHALLIAISSDLNAYGVVCEFDWN----DGNGQEGWPPMDGSEGIRITD---IDTS 109
		           + LA   L I +  D   +G   +F       DG GQ       G+    IT+   +D  
		Sbjct: 22  VRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTREGGAVDTVITNALILDHW 81
		
		Query: 110 GIFDSD 115
		           GI  +D
		Sbjct: 82  GIVKAD 87
		
		
	1257#JEONG1266_06610	SHIGARICIN#Ribosome inactivating protein family signature.	144	4e-43
		>SHIGARICIN#Ribosome inactivating protein family signature.
		          Length = 289
		
		 Score =  144 bits (364), Expect = 4e-43
		 Identities = 53/277 (19%), Positives = 115/277 (41%), Gaps = 35/277 (12%)
		
		Query: 4   ILFKWVLCLLLGFSSVSYSREFTIDFSTQQSYVSSLNSIRTEISTPLEHISQGTTSVSVI 63
		           +    +L L L   +V     F +  +T  SY   ++++R  +    +        + ++
		Sbjct: 6   VFSLLILTLFLTAPAVEGDVSFRLSGATSSSYGVFISNLRKALPYERK-----LYDIPLL 60
		
		Query: 64  NHTPPGSYFAVDIRGLDVYQARFDHLRLIIEQNNLYVAGFVNTATNTFYRFSDFT----- 118
		             T PGS     I  L  Y    + + + I+  N+YV G+   A +T Y F++ +     
		Sbjct: 61  RSTLPGSQRYALIH-LTNYAD--ETISVAIDVTNVYVMGY--RAGDTSYFFNEASATEAA 115
		
		Query: 119 HISVPGVT-TVSMTTDSSYTTLQRVAALERSGMQISRHSLVSSYLALMEFSGNTMTRDAS 177
		                     V++    +Y  LQ  A   R  + +   +L S+   L  ++ N+    A+
		Sbjct: 116 KYVFKDAKRKVTLPYSGNYERLQIAAGKIRENIPLGLPALDSAITTLFYYNANS----AA 171
		
		Query: 178 RAVLRFVTVTAEALRFRQIQREFRQALSETAPVYTMTPGDVDLTLNWGRISNVLPEYRGE 237
		            A++  +  T+EA R++ I+++  + + +T   +  +   + L  +W  +S  +      
		Sbjct: 172 SALMVLIQSTSEAARYKFIEQQIGKRVDKT---FLPSLAIISLENSWSALSKQIQIASTN 228
		
		Query: 238 DGV----------RVGRISFNNISA--ILGTVAVILN 262
		           +G           +  R++  N+ A  +   +A++LN
		Sbjct: 229 NGQFETPVVLINAQNQRVTITNVDAGVVTSNIALLLN 265
		
		
	1290#JEONG1266_06780	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	5e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (349), Expect = 5e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGMVTSFSYAGDRNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	1291#JEONG1266_06785	CHANLCOLICIN#Channel forming colicin signature.	31	0.010
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 31.2 bits (70), Expect = 0.010
		 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 20/163 (12%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR 160
		           EA  +    + E A+  E A+K    A+ S         +   S  ++   A DA     
		Sbjct: 175 EAEEKRLAALSEEAKAVEIAQKKLSAAQ-SEVVKMDGEIKTLNSRLSSSIHARDAEMKTL 233
		
		Query: 161 QAAE-SAAAAKQSEEASSSSASAAAQKASESLQS----------------ATDAELSKKT 203
		                  A A    +         + +A++ LQ+                  + +     
		Sbjct: 234 AGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTA 293
		
		Query: 204 AESAAGNAARDATTAAEKARESAESAQSAEQSRIA-AEEAVNR 245
		           +E+   N      T  +KA     + ++A  +R+  AEE + +
		Sbjct: 294 SETRI-NRINADITQIQKAISQVSNNRNAGIARVHEAEENLKK 335
		
		
		
		 Score = 29.3 bits (65), Expect = 0.034
		 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
		
		Query: 130 SARNAGISASQAEESAANADTSAGDASESARQAAESAAAAKQSEEASSSSASAAAQKASE 189
		           S    G   S++E SAA   T+    ++  +  AE AA AK         A+A AQ  ++
		Sbjct: 34  SGGGGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAK---------AAAEAQAKAK 84
		
		Query: 190 SLQSATDAELSKKTAESAAGNAARDATTAAEKARESAESAQSAEQSRIA-AEEAVNRI 246
		           + + A    L     E+   NA+R  +        +A      E+ R+A AEE   + 
		Sbjct: 85  ANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKE 142
		
		
		
		 Score = 29.3 bits (65), Expect = 0.038
		 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR 160
		           E  R+     E+A + AE+ +K     E +     +  ++AEE    A +    A E   
		Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIER-EKAETERQLKLAEAEEKRLAALSEEAKAVE--- 192
		
		Query: 161 QAAESAAAAKQSEEASSSSASAAAQKASESLQSATDAE---LSKKTAESAAGNAARDATT 217
		             A+   +A QSE                S   A DAE   L+ K  E A  +A      
		Sbjct: 193 -IAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELD 251
		
		Query: 218 AAEKARESAESAQSAEQSRIAAEEAVNRI 246
		              K    +  A    Q+R   E    R+
		Sbjct: 252 ELVKK--LSPRANDPLQNRPFFEATRRRV 278
		
		
	1296#JEONG1266_06810	BLACTAMASEA#Beta-lactamase class A signature.	29	0.041
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 28.6 bits (64), Expect = 0.041
		 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 23/165 (13%)
		
		Query: 40  VLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDN 99
		           + MD  +G+ LTA    ++    S  K++    V   +D+     +  +   +      +
		Sbjct: 43  IEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102
		
		Query: 100 PV---FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYA 156
		           PV    +   +         +V +L    I  S N A   L   + G        +  + 
		Sbjct: 103 PVSEKHLADGM---------TVGELCAAAITMSDNSAANLLLATVGG-----PAGLTAFL 148
		
		Query: 157 EKLHLKDTH---FETVHGLDAPGQH---SSAYDLAVLSRAIIHGE 195
		            ++    T    +ET      PG     ++   +A   R ++  +
		Sbjct: 149 RQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQ 193
		
		
	1299#JEONG1266_06825	FbpA_PF05833#Fibronectin-binding protein	28	0.012
		>FbpA_PF05833#Fibronectin-binding protein
		          Length = 577
		
		 Score = 27.5 bits (61), Expect = 0.012
		 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
		
		Query: 16  RLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDR 75
		             +++ NKL++  +   +++  N++ +  L ++   I    + + I+ I        E  
		Sbjct: 385 SYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKK------ELI 438
		
		Query: 76  VDDYIIKNAELSKERRDISKKLK 98
		              YI        ++   SK + 
		Sbjct: 439 ETGYIKFKKIYKSKKSKTSKPMH 461
		
		
	1330#JEONG1266_06995	TCRTETB#Tetracycline resistance protein TetB signature.	33	0.002
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 32.9 bits (75), Expect = 0.002
		 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 18/259 (6%)
		
		Query: 79  LGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFA 138
		           +G  ++G   D+LG KR+L+  + +    + +  +  SF ++     I+   ++     A
		Sbjct: 64  IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL----LIMARFIQGAGAAA 119
		
		Query: 139 VGGEWGGAALLSVESAPKNKK-AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWG 197
		                       +    + K      S V +G GVG  +   +   I             
		Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI------------H 167
		
		Query: 198 WRIPFLFSIVLVLGALWVRNGMEESAEFEQQQYNQAAAKKRIPVIEALLRHPGAFLKIIA 257
		           W    L  ++ ++   ++   +++     +  ++          I   +    ++     
		Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVR-IKGHFDIKGIILMSVGIVFFMLFTTSYSISFL 226
		
		Query: 258 LRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR 317
		           +       +++     +     + GL + +   IG+L GG+   T+  F  +     +  
		Sbjct: 227 IVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDV 286
		
		Query: 318 VYITGALIGTLSAFPFFMA 336
		             ++ A IG++  FP  M+
		Sbjct: 287 HQLSTAEIGSVIIFPGTMS 305
		
		
	1332#JEONG1266_07005	INTIMIN#Intimin signature.	700	0.0
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score =  700 bits (1808), Expect = 0.0
		 Identities = 221/790 (27%), Positives = 353/790 (44%), Gaps = 70/790 (8%)
		
		Query: 148 QQIASTSQQIGSLLAEDMNSEQAANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFS 207
		           QQ AS   Q+ S     +N + A + A G A +QAS  +  WL  +GTA + L    +F 
		Sbjct: 168 QQAASLGSQLQS---RSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD 224
		
		Query: 208 LKNSQFDFLHPWYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDL 267
		              S  DFL P+Y++   L F Q      D R   N G G R F P  M G N F D D 
		Sbjct: 225 --GSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDF 282
		
		Query: 268 SRYHSRAGIGAEYWRDYLKLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAEGWLPAW 327
		           S  ++R GIG EYWRDY K S NGY R++ W  +     DY+ RPANG+D+R  G+LP++
		Sbjct: 283 SGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYN-KKDYDERPANGFDIRFNGYLPSY 341
		
		Query: 328 PHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDT 387
		           P LG KL+YEQYYGD VALF+ D  QSNP A T G+NYTP PL+T   + R G   END 
		Sbjct: 342 PALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDL 401
		
		Query: 388 RFAVDFTWQPGSAMQKQLDPNEVDARRSLAGSRFDLVDRNNNIVLEYRKKELVRLTLTDP 447
		            +++ F +Q      +Q++P  V+  R+L+GSR+DLV RNNNI+LEY+K++++ L +   
		Sbjct: 402 LYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHD 461
		
		Query: 448 VTGKSGEVKSLVSSLQTKYALKGYNVEATALEAAGGKVVTTG----KDILVTLPAYRFTS 503
		           + G     + +   +++KY L     + +AL + GG++  +G    +D    LPAY    
		Sbjct: 462 INGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAY---- 517
		
		Query: 504 TPETDNTWPIEVTAEDVKGNFSNREQ-SMVVVQAPTLSQKDSSVSLSSQTLSADSHSTAT 562
		                N + +   A D  GN SN    ++ V+    +  +      ++   SA +  T  
		Sbjct: 518 VQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEA 577
		
		Query: 563 LTFIAH------DAAGNPVIGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTL 616
		           +T+ A         A  PV   ++S    G   ++ +    NG G  T  L +      +
		Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVS----GTAVLSANSANTNGSGKATVTLKSDKPGQVV 633
		
		Query: 617 TLMPQLNGVDAAKAPAVVNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELR-DENDKPV 675
		                     A  A AV  I    +  + + IK DK   ++     +T  ++  + DKPV
		Sbjct: 634 VSAKTAEMTSALNANAV--IFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPV 691
		
		Query: 676 KEQKQQLNTAVSIDNVKPGVTTDWKETADGVYKATYTAYTKGSGL-TAKLLMQNWNEDLH 734
		             Q+    T +     K   +T+ K   +G  K T T+ T G  L +A++     +    
		Sbjct: 692 SNQEVTFTTTLG----KLSNSTE-KTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAP 746
		
		Query: 735 TAGFIIDANPQSAKIATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGS 794
		              F          I  +     G L                         + +  ++  
		Sbjct: 747 EVEFFTTLTIDDGNIEIVGTGVKGKLPTV---------------------WLQYGQVNLK 785
		
		Query: 795 ATSFNNQNTAKTDVNGLATFDLKSSK---QEDNTVEVTLENGVKQTLIVSFVGDSSTAQV 851
		           A+  N + T ++    +A+ D  S +   +E  T  +++ +   QT   ++   +  + +
		Sbjct: 786 ASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQT--ATYTIATPNSLI 843
		
		Query: 852 DLQKSKNEVVADGNDSATMTATVRDAKGNLLNDVKVTF----------NVNSAAAKLSQT 901
		               SK     D  ++         +  N L +V   +          +  +  + + QT
		Sbjct: 844 VPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQT 903
		
		Query: 902 EVNSHDGIAT 911
		             ++  G+A+
		Sbjct: 904 AQDAKSGVAS 913
		
		
		
		 Score =  154 bits (391), Expect = 8e-40
		 Identities = 96/389 (24%), Positives = 157/389 (40%), Gaps = 44/389 (11%)
		
		Query: 1126 TAEAILLNGNRD-----TKIVNIAPDASNAQVTLNIPAQQV--VTNNSDSVQLTATVK-- 1176
		            TA A   NGN       T  V       +     +  A +     + ++++  TATVK  
		Sbjct: 528  TARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKN 587
		
		Query: 1177 --DPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTA-T 1233
		                +N PV+   V+ T    ++AN        A T  +G+A VTLK  K G   V+A T
		Sbjct: 588  GVAQANVPVSFNIVSGT--AVLSAN-------SANTNGSGKATVTLKSDKPGQVVVSAKT 638
		
		Query: 1234 LGNNNASDAQPVTFVADKDSAVVVLQTSKAEIIGNGVDETTLTATVKDPFDNAVKDLQVT 1293
		                +A +A  V FV    +++  ++  K   + NG D  T T  V    D  V + +VT
		Sbjct: 639  AEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG-DKPVSNQEVT 697
		
		Query: 1294 FSTNPADTQLSQSKSNTNDSGVAEVTFKGTVLGVHTAEATLPNGNNDTKIVNIAPDASNA 1353
		            F+T     +LS S   T+ +G A+VT   T  G     A + +   D K   +       
		Sbjct: 698  FTTTLG--KLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVE---FFT 752
		
		Query: 1354 QVTLNIPAQQVVTNNSDSVQLTATVK-DPSNHPVAGITVNFTMPQDVAANFTLENNGIAI 1412
		             +T++    ++V         T  ++    N   +G    +T        +   N  IA 
		Sbjct: 753  TLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYT--------WRSANPAIAS 804
		
		Query: 1413 TQANGEAHVTLKGKKAGTHTVTATLSNNNTSDSQPVTFVADKTSALVVLQISKNEITGNG 1472
		              A+    VTLK K  GT T++       +SD+Q  T+     ++L+V  +SK     + 
		Sbjct: 805  VDAS-SGQVTLKEK--GTTTISVI-----SSDNQTATYTIATPNSLIVPNMSKRVTYNDA 856
		
		Query: 1473 VDSATLTATVKDQFDNEVNNLPVTFSTAS 1501
		            V++            NE+ N+   +  A+
		Sbjct: 857  VNTCKNFGGKLPSSQNELENVFKAWGAAN 885
		
		
		
		 Score =  129 bits (324), Expect = 1e-31
		 Identities = 83/397 (20%), Positives = 151/397 (38%), Gaps = 36/397 (9%)
		
		Query: 923  TVTASVSSGSQANQQVIFIGDQSTAALTLSVPSGDITVT-------NTAPLHMTATLQDK 975
		            T  A   +G+ +N  ++ I   S   +   V   D T          T  +  TAT++ K
		Sbjct: 528  TARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVK-K 586
		
		Query: 976  NGNPLKDKEITFSVPNDVASRFSISNSGKGMTDSNGTAIASLTGTLAGTHMITARLANSN 1035
		            NG    +  ++F++ +  A   + S +    T+ +G A  +L     G  +++A+ A   
		Sbjct: 587  NGVAQANVPVSFNIVSGTAVLSANSAN----TNGSGKATVTLKSDKPGQVVVSAKTAEMT 642
		
		Query: 1036 VS-DTQPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPFDNVVKNLSVVFRTS 1094
		             + +   + FV     ++  ++  K   + NG D  T T  V    D  V N  V F T+
		Sbjct: 643  SALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG-DKPVSNQEVTFTTT 701
		
		Query: 1095 PADTQLSLNARNTNENGIAEVTLKGTVLGVHTAEAILLNGNRDTKIVNIAPDASNAQVTL 1154
		                +LS +   T+ NG A+VTL  T  G     A + +   D K   +        +T+
		Sbjct: 702  LG--KLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVE---FFTTLTI 756
		
		Query: 1155 NIPAQQVVTNNSDSVQLTATVK-DPSNHPVAGITVNFTMPQDVAANFTLENNGIAITQAN 1213
		            +    ++V         T  ++    N   +G    +T        +   N  IA   A+
		Sbjct: 757  DDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYT--------WRSANPAIASVDAS 808
		
		Query: 1214 GEAHVTLKGKKAGTHTVTATLGNNNASDAQPVTFVADKDSAVVVLQTSKAEIIGNGVDET 1273
		                VTLK K  GT T++       +SD Q  T+     ++++V   SK     + V+  
		Sbjct: 809  -SGQVTLKEK--GTTTISVI-----SSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTC 860
		
		Query: 1274 TLTATVKDPFDNAVKDLQVTFSTNPADTQLSQSKSNT 1310
		                       N ++++   +           S++  
		Sbjct: 861  KNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTII 897
		
		
		
		 Score =  119 bits (300), Expect = 7e-29
		 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 29/367 (7%)
		
		Query: 830  LENGVKQTLIVSFVGDSSTAQ--VDLQKSKNEVVADGNDSATMTATVRDAKGNLLNDVKV 887
		              N V  T+ V   G         D    K    ADG ++ T TATV+       N V V
		Sbjct: 538  SSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQAN-VPV 596
		
		Query: 888  TFNVNSAAAKLSQTEVNSH-DGIATATLTSLKNGDYTVTASVSSGSQA-NQQVIFIGDQS 945
		            +FN+ S  A LS    N++  G AT TL S K G   V+A  +  + A N   +   DQ+
		Sbjct: 597  SFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQT 656
		
		Query: 946  TAALTLSVPSGDITVTNTAPLHMTATLQ-DKNGNPLKDKEITFSVPNDVASRFSISNSGK 1004
		             A++T  + +   T        +T T++  K   P+ ++E+TF+      +     ++  
		Sbjct: 657  KASIT-EIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFT------TTLGKLSNST 709
		
		Query: 1005 GMTDSNGTAIASLTGTLAGTHMITARLANSNVSDTQPMTFVADKDRAVVVLQTSKAEIIG 1064
		              TD+NG A  +LT T  G  +++AR+++  V    P      +    + +     EI+G
		Sbjct: 710  EKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEV----EFFTTLTIDDGNIEIVG 765
		
		Query: 1065 NGVDETTLTATVK-DPFDNVVKNLSVVFRTSPADTQLSLNARNTNENGIAEVTLKGTVLG 1123
		             GV     T  ++    +      +  +    A+  ++    ++      +VTLK    G
		Sbjct: 766  TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASS-----GQVTLKEK--G 818
		
		Query: 1124 VHTAEAILLNGNRDTKIVNIAPDASNAQVTLNIPAQQVVTNNSDSVQLTATVKDPSNHPV 1183
		              T   I    + D +         N+ +  N+  +    +  ++ +        S + +
		Sbjct: 819  TTTISVI----SSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNEL 874
		
		Query: 1184 AGITVNF 1190
		              +   +
		Sbjct: 875  ENVFKAW 881
		
		
		
		 Score = 87.8 bits (217), Expect = 4e-19
		 Identities = 98/393 (24%), Positives = 136/393 (34%), Gaps = 54/393 (13%)
		
		Query: 1424 KGKKAGTHTVTAT-LSNNNTSDSQPVT-FVADKTSALVVLQISKNEITGNGVDSATLTAT 1481
		             G  +    +T T LSN    D   VT F ADKTSA             +G ++ T TAT
		Sbjct: 535  NGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAK-----------ADGTEAITYTAT 583
		
		Query: 1482 VKDQFDNEVNNLPVTFSTASSGLTLTPGESNTNESGIAQATLAGVAFGEQTVTASLANNG 1541
		            VK     + N  PV+F+  S    L+   +NTN SG A  TL     G+  V+A  A   
		Sbjct: 584  VKKNGVAQANV-PVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMT 642
		
		Query: 1542 ASDNKTVHFIGDTAAAKIIELTPVPDSIIAGTPQNSSGSVITATV-VDNNGFPVKGVTVN 1600
		            ++ N       D   A I E+     + +A          IT TV V     PV    V 
		Sbjct: 643  SALNANAVIFVDQTKASITEIKADKTTAVANGQ-----DAITYTVKVMKGDKPVSNQEVT 697
		
		Query: 1601 FTSNAATAEMTNGGQAVTNEQGKATVTYTNTRSSIESGARPDTVEASLENGSSTLSTSIN 1660
		            FT+       +      T+  G A VT T+T                   G S +S  + 
		Sbjct: 698  FTTTLGKLSNS---TEKTDTNGYAKVTLTSTTP-----------------GKSLVSARV- 736
		
		Query: 1661 VNADASTAHLTLLQALFDTVSAGDTTNLYIEVKDNYGNGVPQQ--EVTLSVSPSEGVTPS 1718
		              +D +          F T++  D  N+ I      G GV  +   V L           
		Sbjct: 737  --SDVAVDVKAPEVEFFTTLTI-DDGNIEIV-----GTGVKGKLPTVWLQYGQVNLKASG 788
		
		Query: 1719 NNAIYTTNHDGNFYASFTATKAGV---YQVTATLENGDSMQQTVTYVPNVANAEISLAAS 1775
		             N  YT        AS  A+   V    + T T+    S  QT TY     N+ I    S
		Sbjct: 789  GNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMS 848
		
		Query: 1776 KDPVIANNNDLTTLTATVADTEGNAIANSEVTF 1808
		            K     +  +          +  N + N    +
		Sbjct: 849  KRVTYNDAVNTCKNFGGKLPSSQNELENVFKAW 881
		
		
		
		 Score = 75.9 bits (186), Expect = 2e-15
		 Identities = 88/467 (18%), Positives = 166/467 (35%), Gaps = 40/467 (8%)
		
		Query: 2219 SGGKVRTNSSGQA--------PVVLTSNKVGTYTVTASFHNGVT----IQTQTIVKVTGN 2266
		             GG+++ + S  A          V   + V   T  A   NG +    + T T++     
		Sbjct: 495  QGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQV 554
		
		Query: 2267 SSTAHVASFIADPSTIAATNSDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAV 2326
		                 V  F AD ++  A  ++  T  ATV+  +G     + V F + SG+A L++ +A 
		Sbjct: 555  VDQVGVTDFTADKTSAKADGTEAITYTATVKK-NGVAQANVPVSFNIVSGTAVLSANSAN 613
		
		Query: 2327 TDQNGIATTSVRGAITGSVTVSAVTTAGGMQTVDITLVAGPADASQSVLKNNRSSLKGDF 2386
		            T+ +G AT +++    G V VSA  TA     ++   V        S+ +          
		Sbjct: 614  TNGSGKATVTLKSDKPGQVVVSA-KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVA 672
		
		Query: 2387 TDSAELHLVLHDISGNPIKVSEGLEFVQSGTNAPYVQVSAIDYSKNFSGEYKATVTGGGE 2446
		                 +   +  + G+    ++ + F  +        +S      + +G  K T+T    
		Sbjct: 673  NGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK-----LSNSTEKTDTNGYAKVTLTSTTP 727
		
		Query: 2447 GIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVLVNGANLPTTTFPSQGFTGAYYQLN 2506
		            G + +   ++ V     +  ++F      I  G + + G  +     P+         L 
		Sbjct: 728  GKSLVSARVSDVAVDVKAPEVEF-FTTLTIDDGNIEIVGTGV-KGKLPTVWLQYGQVNL- 784
		
		Query: 2507 NDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSKWERITATPKTGGPSYIYEIRVK 2566
		                + G     +  ++ A      ++G+VT K  G+    I+        +  Y I   
		Sbjct: 785  --KASGGNGKYTWRSANPAIASVDASSGQVTLKEKGT--TTISVISSDNQTA-TYTIATP 839
		
		Query: 2567 SWWVNAG-DAFMIYSLAENFCSSNGYTLPLGDHLNHSRSRGIGSLYSEWGDMGHYTTEAG 2625
		            +  +       + Y+ A N C + G  LP   +        + +++  WG    Y     
		Sbjct: 840  NSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNE-------LENVFKAWGAANKYEYYKS 892
		
		Query: 2626 FHSNMYW---SSSPANSNEQYVVSLATGDQSVFEKLGF--AYATCYK 2667
		              + + W   ++  A S       L   +     K     AYATC K
		Sbjct: 893  SQTIISWVQQTAQDAKSGVASTYDLVKQNPLNNIKASESNAYATCVK 939
		
		
		
		 Score = 67.8 bits (165), Expect = 5e-13
		 Identities = 58/264 (21%), Positives = 87/264 (32%), Gaps = 18/264 (6%)
		
		Query: 1698 NGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQVTATLENGDSMQQ 1757
		            NGV Q  V +S +   G    +     TN  G    +  + K G   V+A      S   
		Sbjct: 587  NGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALN 646
		
		Query: 1758 T--VTYVPNVANAEISLAASKDPVIANNNDLTTLTATVADTEGNAIANSEVTFTLPEDVR 1815
		               V +V     +   + A K   +AN  D  T T  V       ++N EVTFT      
		Sbjct: 647  ANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKV-MKGDKPVSNQEVTFT------ 699
		
		Query: 1816 ANFTLGDGGKVVTDTEGKAKVTLKGTKAGAHTVTASMAGGKSE--QLVVNFIADTLTAQV 1873
		                        TDT G AKVTL  T  G   V+A ++    +     V F         
		Sbjct: 700  TTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDG 759
		
		Query: 1874 NLNVTEDNFIANNVGMTRLQATVTDGNGN-PLANEAVTFTLPADVSASFTLGQGGSAITD 1932
		            N+ +     +   V        +  G  N   +     +T  +   A  ++    S    
		Sbjct: 760  NIEI-----VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASV-DASSGQVT 813
		
		Query: 1933 INGKAEVTLSGTKSGTYPVTVSVN 1956
		            +  K   T+S   S     T ++ 
		Sbjct: 814  LKEKGTTTISVISSDNQTATYTIA 837
		
		
		
		 Score = 60.1 bits (145), Expect = 1e-10
		 Identities = 72/359 (20%), Positives = 128/359 (35%), Gaps = 37/359 (10%)
		
		Query: 1743 YQVTATLENGDSMQQTVTYVPNVANAEISLAASKDPVIANNNDLT-----------TLTA 1791
		            Y +    +      Q +   P   N   +L+ S+  ++  NN++             +  
		Sbjct: 403  YSMQFRYQFDKPWSQQIE--PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPH 460
		
		Query: 1792 TVADTEGNA---IANSEVTFTLPEDVRANFTL-GDGGKVVTDTEGKAK---VTLKGTKAG 1844
		             +  TE +        +  + L   V  +  L   GG++       A+     L     G
		Sbjct: 461  DINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQG 520
		
		Query: 1845 AH-----TVTASMAGGKS---EQLVVNFIADTLTAQ----VNLNVTEDNFIANNVGMTRL 1892
		                   T  A    G S     L +  +++          +    + +  A+       
		Sbjct: 521  GSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITY 580
		
		Query: 1893 QATVTDGNGNPLANEAVTFTLPADVSASFTLGQGGSAITDINGKAEVTLSGTKSGTYPVT 1952
		             ATV   NG   AN  V+F +   VS +  L    SA T+ +GKA VTL   K G   V+
		Sbjct: 581  TATVKK-NGVAQANVPVSFNI---VSGTAVLSAN-SANTNGSGKATVTLKSDKPGQVVVS 635
		
		Query: 1953 VSVNNYGVSDTKQVTLIADAGTAKLASLTSVYSFVVSTTEGATMTASVTDANGNPVEGIK 2012
		                    +      +  D   A +  + +  +  V+  + A            PV   +
		Sbjct: 636  AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQE 695
		
		Query: 2013 VNFRGTSVTLSSTSVETDDRGFAEILVTSTEVGLKTVSASLADKPTEVISRLLNAKADI 2071
		            V F  T   LS+++ +TD  G+A++ +TST  G   VSA ++D   +V +  +     +
		Sbjct: 696  VTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTL 754
		
		
		
		 Score = 57.4 bits (138), Expect = 8e-10
		 Identities = 51/197 (25%), Positives = 76/197 (38%), Gaps = 12/197 (6%)
		
		Query: 2154 LANGSSYEKDLVVIDQKLTLSASSPLIGVNSPTGATLTATLTSANGTPVEGQVINFSVTP 2213
		            L+NG   ++  V        SA +     +     T TAT+   NG       ++F++  
		Sbjct: 549  LSNGQVVDQVGVTDFTADKTSAKA-----DGTEAITYTATVKK-NGVAQANVPVSFNIVS 602
		
		Query: 2214 EGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGV-TIQTQTIVKVTGNSSTAHV 2272
		              A LS     TN SG+A V L S+K G   V+A        +    ++ V  + + A +
		Sbjct: 603  GTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFV--DQTKASI 660
		
		Query: 2273 ASFIADPSTIAATNSDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVTDQNGI 2332
		                AD +T  A   D  T    V  G    +    V F    G  + +  T  TD NG 
		Sbjct: 661  TEIKADKTTAVANGQDAITYTVKVMKG-DKPVSNQEVTFTTTLGKLSNS--TEKTDTNGY 717
		
		Query: 2333 ATTSVRGAITGSVTVSA 2349
		            A  ++     G   VSA
		Sbjct: 718  AKVTLTSTTPGKSLVSA 734
		
		
JEONG1266_07155	JEONG1266_07535	Y	Y	Y	JEONG1266_07065	JEONG1266_07280
	JEONG1266_07155	3	24	2.998331	***tellurite resistance protein
	JEONG1266_07160	4	25	2.808116	hypothetical protein
	JEONG1266_07165	3	22	2.932051	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_07170	3	20	1.780809	transposase
	JEONG1266_07175	1	22	-0.039953	transposase
	JEONG1266_07180	2	26	-0.926618	holin
	JEONG1266_07185	0	26	-2.107291	hypothetical protein
	JEONG1266_07190	1	26	-0.240924	lysozyme
	JEONG1266_07200	1	32	-0.501510	endopeptidase
	JEONG1266_07205	2	29	1.265975	hypothetical protein
	JEONG1266_07210	2	26	3.665280	transcriptional regulator
	JEONG1266_07215	2	25	4.072035	terminase
	JEONG1266_07220	1	25	4.688980	phage tail protein
	JEONG1266_07225	-1	25	5.855174	phage portal protein
	JEONG1266_07230	0	25	5.546144	scaffolding protein
	JEONG1266_07235	1	23	5.479624	head decoration protein
	JEONG1266_07240	1	25	5.454089	major capsid protein E
	JEONG1266_07245	1	25	5.501683	phage tail protein
	JEONG1266_07250	2	28	5.900961	phage minor tail protein G
	JEONG1266_07255	4	30	6.621295	phage tail assembly protein T
	JEONG1266_07260	3	31	7.270615	phage tail tape measure protein
	JEONG1266_07265	2	31	7.110216	phage tail protein
	JEONG1266_07270	4	33	5.861127	phage minor tail protein L
	JEONG1266_07275	6	30	5.874125	phage tail protein
	JEONG1266_07280	5	28	5.726928	phage tail protein
	JEONG1266_07285	5	27	5.898472	hypothetical protein
	JEONG1266_07290	5	27	5.319789	superoxide dismutase
	JEONG1266_07295	5	24	4.629145	phage tail protein
	JEONG1266_07300	3	23	2.830721	enterobacterial Ail/Lom family protein
	JEONG1266_07305	3	31	-0.803242	phage tail protein
	JEONG1266_07310	4	35	-2.840076	phage tail protein
	JEONG1266_07315	5	41	-9.091281	Secreted effector protein EspF(U)
	JEONG1266_07320	5	40	-8.697138	secretion protein EspJ
	JEONG1266_07325	1	28	-8.002128	hypothetical protein
	JEONG1266_07330	1	25	-6.293748	cytochrome B
	JEONG1266_07335	1	26	-5.885362	metal-binding protein ZinT
	JEONG1266_07340	0	31	-7.107336	sulfoxide reductase heme-binding subunit YedZ
	JEONG1266_07345	-1	26	-5.614358	mononuclear molybdenum enzyme YedY
	JEONG1266_07350	-1	27	-6.133562	hydroxyisourate hydrolase
	JEONG1266_07355	-1	32	-7.738731	DNA-binding response regulator
	JEONG1266_07360	0	30	-7.083950	two-component sensor histidine kinase
	JEONG1266_07365	-2	24	-5.520649	chaperone protein HchA
	JEONG1266_07370	-2	14	-1.955121	hypothetical protein
	JEONG1266_07380	-2	13	-0.045900	hypothetical protein
	JEONG1266_07385	2	19	1.933871	phosphohydrolase
	JEONG1266_07390	2	18	1.905186	DNA (cytosine-5-)-methyltransferase
	JEONG1266_07395	0	17	1.187049	very short patch repair endonuclease
	JEONG1266_07400	-2	17	1.224061	drug/metabolite exporter YedA
	JEONG1266_07405	-3	16	0.679614	hypothetical protein
	JEONG1266_07410	-2	16	0.408553	hypothetical protein
	JEONG1266_07415	-1	19	-2.209670	diguanylate cyclase
	JEONG1266_07420	-2	16	-2.611596	mannosyl-3-phosphoglycerate phosphatase
	JEONG1266_07425	-1	21	-4.046805	hypothetical protein
	JEONG1266_07430	-1	20	-3.834039	hypothetical protein
	JEONG1266_07435	-1	17	-2.953165	helix-turn-helix transcriptional regulator
	JEONG1266_07440	0	16	-2.274102	flagellar biosynthetic protein FliR
	JEONG1266_07445	-1	17	0.697658	flagellar export apparatus protein FliQ
	JEONG1266_07450	-2	21	1.944753	flagellar biosynthetic protein FliP
	JEONG1266_07455	-1	17	2.509409	flagellar biosynthetic protein FliO
	JEONG1266_07460	-1	18	2.505671	flagellar motor switch protein FliN
	JEONG1266_07465	-1	19	3.610943	flagellar motor switch protein FliM
	JEONG1266_07470	-1	17	3.875152	flagellar basal body-associated protein FliL
	JEONG1266_07475	1	18	4.444172	flagellar hook-length control protein
	JEONG1266_07480	0	16	4.265171	flagellar biosynthesis chaperone FliJ
	JEONG1266_07485	0	17	4.348513	flagellum-specific ATP synthase FliI
	JEONG1266_07490	-1	16	4.088420	flagellar assembly protein H
	JEONG1266_07495	-1	13	-1.169023	flagellar motor switch protein FliG
	JEONG1266_07500	0	14	-2.451336	flagellar M-ring protein FliF
	JEONG1266_07505	-2	21	-4.279539	flagellar hook-basal body complex protein FliE
	JEONG1266_07510	4	39	-11.851310	integrase
	JEONG1266_07515	4	40	-12.115316	type III effector
	JEONG1266_07520	2	37	-10.370852	acetyltransferase
	JEONG1266_07525	1	32	-7.702309	type III effector
	JEONG1266_07530	0	19	-4.481096	acetyltransferase
	JEONG1266_07535	0	16	-3.563218	hypothetical protein
	1374#JEONG1266_07250	INTIMIN#Intimin signature.	33	0.001
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 33.1 bits (75), Expect = 0.001
		 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
		
		Query: 130 KEVITRTVKVTNVGKPSVAEERSKITPVSAIKVTP-------------TSGTVAKGKTTT 176
		           ++ IT TVKV    KP   +E +  T +  +  +              TS T  K   + 
		Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSA 734
		
		Query: 177 LT--VSFEPESATDKTFRAVSADPSKATI--SVKDMTITVNGVATGKVQIPVVSGNGQF 231
		               V+ + ++   + F  ++ D     I  +     +    +  G+V +    GNG++
		Sbjct: 735 RVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKY 793
		
		
	1377#JEONG1266_07265	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	40	4e-05
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 40.0 bits (93), Expect = 4e-05
		 Identities = 33/256 (12%), Positives = 69/256 (26%), Gaps = 21/256 (8%)
		
		Query: 367 ENARLGLAAATLQSDMEKAGELAARDRAERDASQLKYTGEAQK---------AYERLLTP 417
		           +N+ L      L+   ++  E  +  + +   +    + +A K           E+ L  
		Sbjct: 72  KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131
		
		Query: 418 LEKYTARQEELNKALKDGKILRADYNTLMAAAKKDYESTLKKPKSSGVKVSAGERQEDQA 477
		              ++       K L+  K   A     +  A +   +      +    + A +   +  
		Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191
		
		Query: 478 HAALLALETELRTLEKHSGANEKISQQRRDLWKAENQYAVLKEAATKRQLSEQEKSLLAH 537
		            A L               A  K  +  +    A                +     +   
		Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251
		
		Query: 538 KDETLEYKRQLAELGDKVEYQKRLNELAQQAVRFEEQQSAKQAAISAKARGL-------- 589
		           + E    + + AEL   +E     +      ++  E + A   A  A             
		Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311
		
		Query: 590 ----TDRQAQRESEAQ 601
		                D  A RE++ Q
		Sbjct: 312 QSLRRDLDASREAKKQ 327
		
		
	1385#JEONG1266_07305	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	4e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (350), Expect = 4e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGLVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	1386#JEONG1266_07310	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	39	4e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 38.9 bits (90), Expect = 4e-05
		 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 30/289 (10%)
		
		Query: 9    LKDGTGKPVENCTIQLKARRNSATVVVNTVASENPDE-AGRYSMDVEYGQYSVILLVEGF 67
		            + D TG+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 68   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 127
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 128  ETSARNAGISSSKAEASAANADTSAGDALESARQAA-ESAAAAKQSEEASSSSASAAAQK 186
		            ET A N+   S   E +  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 187  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 228
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 229  AQSAEQSRIAAEEAVNRIPTVVGPPGPKGEQGPAGPQGPKGDKGERGDT 277
		             QS   +    E+      + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	1388#JEONG1266_07320	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	30	0.018
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 30.0 bits (67), Expect = 0.018
		 Identities = 31/243 (12%), Positives = 65/243 (26%), Gaps = 23/243 (9%)
		
		Query: 44   SPSSSSISATTLFRAPNAHSAS----FHRQSTAESSLHQQLPNVRQRLIQHLAEHGIKPA 99
		             P+ ++ S TT   A N+   S     + Q   E++   +      +          + A
		Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086
		
		Query: 100  RSMAEHIPPAPNWPAPPPPVQNE-QSRPLPDVAQRLVQHLAEHGIQPARNMAEHIPPAPN 158
		            +S +E              V+ E +++   +  Q + +  ++  + P +  +E + P   
		Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ--VSPKQEQSETVQPQAE 1144
		
		Query: 159  WPAPPLPVQNEQSRPLPDVAQRLVQHLAEHGIKPARSMAEHIPPAPNWPAPPPPVQNEQS 218
		                  P  N                + E   +   +     P          PV    +
		Sbjct: 1145 PARENDPTVN----------------IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188
		
		Query: 219  RPLPDVAQRLMQHLAEHGIQPARNMAEHIPPAPNWPAPTPPVQNEQSRPLPDVAQRLMQH 278
		                +      ++      QP  N      P          V +           R    
		Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248
		
		Query: 279  LAE 281
		            L +
		Sbjct: 1249 LCD 1251
		
		
	1396#JEONG1266_07360	HTHFIS#FIS bacterial regulatory protein HTH signature.	82	2e-20
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 82.2 bits (203), Expect = 2e-20
		 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
		
		Query: 2   KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61
		            IL+ +D+   +  + Q LS AGY +   S+           D  L++ D+++P  + + 
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 62  ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117
		           +L  ++ A    PV+ ++A+++    ++  + GA DYL KPF  +EL+  +   L +
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		
	1397#JEONG1266_07365	PF06580#Sensor histidine kinase	32	0.005
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 31.8 bits (72), Expect = 0.005
		 Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 37/181 (20%)
		
		Query: 290 ENILFLARADKNNVLVKLDSLS----------------LNKEVENLLDYL--EYLSDEKE 331
		            NI  L   D       L SLS                L  E+  +  YL    +  E  
		Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239
		
		Query: 332 ICFKVECNQQIFADKI---LLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIAS 388
		           + F+ + N  I   ++   L+Q ++ N I + I   P+  +I +    D N  + +++ +
		Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVEN 298
		
		Query: 389 PGAKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKA-IAELHGGSATYHYLNKHNVFRIT 447
		            G+   +  K                 G GL  V+  +  L+G  A      K       
		Sbjct: 299 TGSLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
		
		Query: 448 L 448
		           +
		Sbjct: 345 V 345
		
		
	1401#JEONG1266_07390	CARBMTKINASE#Bacterial carbamate kinase signature.	35	2e-04
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score = 34.8 bits (80), Expect = 2e-04
		 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
		
		Query: 37  AQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQSSSILAAEETRRLLREEFVQFPA-- 94
		            +KLA + + D+ +ILT     +  +L     + Q    +  EE R+   E    F A  
		Sbjct: 219 GEKLAEEVNADIFMILTDV---NGAALYYGTEKEQWLREVKVEELRKYYEEG--HFKAGS 273
		
		Query: 95  --EKIEAVCHAIAAHSFSAQIAPLTTEAKIVQ 124
		              K+ A    I      A IA L    + ++
		Sbjct: 274 MGPKVLAAIRFIEWGGERAIIAHLEKAVEALE 305
		
		
	1402#JEONG1266_07395	PF05272#Virulence-associated E family protein	29	0.045
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.045
		 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
		
		Query: 320 AKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRG 379
		           A+Y + PVLW Y+ R+ K   + G+      VY            +R  +DG+E    RG
		Sbjct: 166 ARYQVGPVLWGYVVRFIK---SDGDKLTLPYVY------------SRSQRDGSEAWKWRG 210
		
		Query: 380 WD 381
		           WD
		Sbjct: 211 WD 212
		
		
	1412#JEONG1266_07445	TYPE3IMRPROT#Type III secretion system inner membrane R protein ...	203	3e-67
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein
		           family signature.
		          Length = 261
		
		 Score =  203 bits (518), Expect = 3e-67
		 Identities = 260/261 (99%), Positives = 261/261 (100%)
		
		Query: 1   MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
		           MLQVTSEQWLSWL+LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA
		Sbjct: 1   MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
		
		Query: 61  NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120
		           NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL
		Sbjct: 61  NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120
		
		Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180
		           NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF
		Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180
		
		Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240
		           LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC
		Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240
		
		Query: 241 EHLFSEIFNLLADIISELPLI 261
		           EHLFSEIFNLLADIISELPLI
		Sbjct: 241 EHLFSEIFNLLADIISELPLI 261
		
		
	1413#JEONG1266_07450	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	67	1e-18
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 67.1 bits (164), Expect = 1e-18
		 Identities = 22/78 (28%), Positives = 42/78 (53%)
		
		Query: 4  ESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFIAII 63
		          + ++  G +A+ + L L+    +VA + GL++ + Q  TQ+ E TL F  K++ V + + 
		Sbjct: 2  DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
		
		Query: 64 IAGPWMLNLLLDYVRTLF 81
		          +   W   +LL Y R + 
		Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
		
		
	1414#JEONG1266_07455	FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein Fl...	334	e-119
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP
		           signature.
		          Length = 245
		
		 Score =  334 bits (858), Expect = e-119
		 Identities = 245/245 (100%), Positives = 245/245 (100%)
		
		Query: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60
		           MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM
		Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60
		
		Query: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120
		           MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK
		Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120
		
		Query: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180
		           ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK
		Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180
		
		Query: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
		           TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
		Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
		
		Query: 241 QSFYS 245
		           QSFYS
		Sbjct: 241 QSFYS 245
		
		
	1416#JEONG1266_07465	FLGMOTORFLIN#Flagellar motor switch protein FliN signature.	212	1e-74
		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.
		          Length = 137
		
		 Score =  212 bits (542), Expect = 1e-74
		 Identities = 125/137 (91%), Positives = 134/137 (97%)
		
		Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDI 60
		           MSDMNNP+D+N GA+DDLWA+AL+EQK+T++KSAADAVFQQ GGGDVSG +QDIDLIMDI
		Sbjct: 1   MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60
		
		Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
		           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
		Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
		
		Query: 121 RITDIITPSERMRRLSR 137
		           RITDIITPSERMRRLSR
		Sbjct: 121 RITDIITPSERMRRLSR 137
		
		
	1417#JEONG1266_07470	FLGMOTORFLIM#Flagellar motor switch protein FliM signature.	381	e-135
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.
		          Length = 344
		
		 Score =  381 bits (979), Expect = e-135
		 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 10/324 (3%)
		
		Query: 5   ILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62
		           +LSQ EID LL   S  +   E    +S    I  YD     +  +E+++ L +++E FA
		Sbjct: 4   VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63
		
		Query: 63  RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122
		           R     L   LR    + V ++    Y EF R++P P+ L +I + PL+G  ++   PS+
		Sbjct: 64  RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123
		
		Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182
		            F  +D LFGG G+   KV+ R+ T  E  V+  ++   L    ++W  +  L     + 
		Sbjct: 124 TFSIIDRLFGGTGQ-AAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181
		
		Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS--R 240
		           E   +F  I   P+++VV      ++G   G  N C+P+  IEP+   L +    +S  R
		Sbjct: 182 ETNPQFAQI-VPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240
		
		Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLKPGDVLPIEKP---DRIIAHVD 297
		           +    +   L  ++    +++VA    + L +  IL L+ GD++ +      D  +  + 
		Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300
		
		Query: 298 GVPVLTSQYGTLNGQYALRIEHLI 321
		                  Q G +  + A +I   I
		Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
		
		
	1419#JEONG1266_07480	FLGHOOKFLIK#Flagellar hook-length control protein signature.	470	e-168
		>FLGHOOKFLIK#Flagellar hook-length control protein signature.
		          Length = 375
		
		 Score =  470 bits (1209), Expect = e-168
		 Identities = 369/375 (98%), Positives = 369/375 (98%)
		
		Query: 1   MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60
		           MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK
		Sbjct: 1   MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60
		
		Query: 61  GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA 120
		           GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA
		Sbjct: 61  GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA 120
		
		Query: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKPTLFTKLTSAQLTTAQPDDAP 180
		           DDLNEDVTASLSALFAMLPGFDNTPKVTD PSTVLP EKPTLFTKLTS QLTTAQPDDAP
		Sbjct: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAP 180
		
		Query: 181 GTPAQPLTPQVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240
		           GTPAQPLTP VAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW
		Sbjct: 181 GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240
		
		Query: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSSHQHVRAALEAA 300
		           QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVS HQHVRAALEAA
		Sbjct: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA 300
		
		Query: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTVNHEPLAGEDDDTLPVPVS 360
		           LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRT NHEPLAGEDDDTLPVPVS
		Sbjct: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS 360
		
		Query: 361 LQGRVTGNSGVDIFA 375
		           LQGRVTGNSGVDIFA
		Sbjct: 361 LQGRVTGNSGVDIFA 375
		
		
	1420#JEONG1266_07485	FLGFLIJ#Flagellar FliJ protein signature.	202	2e-70
		>FLGFLIJ#Flagellar FliJ protein signature.
		          Length = 147
		
		 Score =  202 bits (515), Expect = 2e-70
		 Identities = 146/147 (99%), Positives = 147/147 (100%)
		
		Query: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60
		           MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG
		Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60
		
		Query: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120
		           +TSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST
		Sbjct: 61  ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120
		
		Query: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147
		           AALLAENRLDQKKMDEFAQRAAMRKPE
		Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147
		
		
	1422#JEONG1266_07495	FLGFLIH#Flagellar assembly protein FliH signature.	374	e-135
		>FLGFLIH#Flagellar assembly protein FliH signature.
		          Length = 228
		
		 Score =  374 bits (961), Expect = e-135
		 Identities = 226/228 (99%), Positives = 227/228 (99%)
		
		Query: 1   MSDNLPWKTWTPDDLAPPQAEFVPMVESEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60
		           MSDNLPWKTWTPDDLAPPQAEFVP+VE EETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI
		Sbjct: 1   MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60
		
		Query: 61  AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120
		           AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL
		Sbjct: 61  AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120
		
		Query: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
		           MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT
		Sbjct: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
		
		Query: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228
		           LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV
		Sbjct: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228
		
		
	1423#JEONG1266_07500	FLGMOTORFLIG#Flagellar motor switch protein FliG signature.	341	e-119
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
		          Length = 344
		
		 Score =  341 bits (876), Expect = e-119
		 Identities = 117/329 (35%), Positives = 197/329 (59%), Gaps = 2/329 (0%)
		
		Query: 1   MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE 60
		           +S LTG  K+ ILL++IG + +++VFK+LSQ E+++L+  +A +  I+++   +VL EF+
		Sbjct: 12  VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71
		
		Query: 61  QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD 120
		           +       +     DY R +L K+LG ++A  ++ + L +   +   E +   +P +  +
		Sbjct: 72  ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINN-LGSALQSRPFEFVRRADPANILN 130
		
		Query: 121 LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN 180
		            I+ EHPQ IA IL +L   +A+ IL+     ++ +V  RIA      P  + E+  VL 
		Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190
		
		Query: 181 GLLDGQ-NLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL 239
		             L    +   +  GGV    EIIN+   + E+ +I ++ E D ELA++I  +MF+FE++
		Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250
		
		Query: 240 VDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLS 299
		           V +DDRSIQR+L+E+D + L  ALK  + P++EK  +NMS+RAA +L++D+   GP R  
		Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310
		
		Query: 300 QVENEQKAILLIVRRLAETGEMVIGSGED 328
		            VE  Q+ I+ ++R+L E GE+VI  G +
		Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGE 339
		
		
	1424#JEONG1266_07505	FLGMRINGFLIF#Flagellar M-ring protein signature.	752	0.0
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score =  752 bits (1943), Expect = 0.0
		 Identities = 478/555 (86%), Positives = 515/555 (92%), Gaps = 5/555 (0%)
		
		Query: 3   ATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGA 62
		           +TA Q K LEWLNRLRANP+IPLIVAGSAAVA++VA++LWAK PDYRTLFSNLSDQDGGA
		Sbjct: 5   STATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGA 64
		
		Query: 63  IVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 122
		           IV+QLTQMNIPYRF+  SGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ
		Sbjct: 65  IVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 124
		
		Query: 123 FSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRA 182
		           FSEQVNYQRALEGEL+RTIET+GPVK ARVHLAMPKPSLFVREQKSPSASVTV L PGRA
		Sbjct: 125 FSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRA 184
		
		Query: 183 LDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRI 242
		           LDEGQISA+VHLVSSAVAGLPPGNVTLVDQ GHLLTQSNTS RDLNDAQLK+A+DVE RI
		Sbjct: 185 LDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRI 244
		
		Query: 243 QRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSG 302
		           QRRIEAILSPIVGNGN+HAQVTAQLDFA+KEQTEE Y PNGD S+A LRSRQLN SEQ G
		Sbjct: 245 QRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVG 304
		
		Query: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQ--QASTTSNS---GPRSTQRNETSN 357
		           +GYPGGVPGALSNQPAP N API+TPP NQ N Q   Q ST++NS   GPRSTQRNETSN
		Sbjct: 305 AGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSN 364
		
		Query: 358 YEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEK 417
		           YEVDRTIRHTKMNVGD++RLSVAVVVNYKTL DGKPLPL+ +QMKQIEDLTREAMGFS+K
		Sbjct: 365 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK 424
		
		Query: 418 RGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLT 477
		           RGD+LNVVNSPF++ D +GGELPFWQQQ+FIDQLLAAGRWLLVL+VAW+LWRKAVRPQLT
		Sbjct: 425 RGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLT 484
		
		Query: 478 RRAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 537
		           RR E  KA Q+QAQ R+E E+AVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR
		Sbjct: 485 RRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 544
		
		Query: 538 VVALVIRQWINNDHE 552
		           VVALVIRQW++NDHE
		Sbjct: 545 VVALVIRQWMSNDHE 559
		
		
	1425#JEONG1266_07510	FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signa...	117	5e-38
		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE
		           signature.
		          Length = 103
		
		 Score =  117 bits (294), Expect = 5e-38
		 Identities = 103/103 (100%), Positives = 103/103 (100%)
		
		Query: 2   SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 61
		           SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL
		Sbjct: 1   SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 60
		
		Query: 62  GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 104
		           GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV
		Sbjct: 61  GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
		
		
	1428#JEONG1266_07525	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	1e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 1e-04
		 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
		
		Query: 20  APNYLRRGVASLILRHILQVAHDRCLHRLSLETGTQAGFTACHQLYLKHGFVDC 73
		           A +Y ++GV + +L   ++ A +     L LET      +ACH  Y KH F+  
		Sbjct: 98  AKDYRKKGVGTALLHKAIEWAKENHFCGLMLET-QDINISACH-FYAKHHFIIG 149
		
		
	1430#JEONG1266_07540	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	4e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 4e-04
		 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
		
		Query: 80  APNYLRRGVASLILRHILQVAHDRCLHRLSLETGTQAGFTACHQLYLKHGFVDC 133
		           A +Y ++GV + +L   ++ A +     L LET      +ACH  Y KH F+  
		Sbjct: 98  AKDYRKKGVGTALLHKAIEWAKENHFCGLMLET-QDINISACH-FYAKHHFIIG 149
		
		
JEONG1266_28170	JEONG1266_07835	Y	Y	Y	JEONG1266_07620	JEONG1266_07835
	JEONG1266_28170	-1	24	4.050167	integrase
	JEONG1266_07720	0	25	4.019542	peptide transporter
	JEONG1266_07725	-1	27	4.152043	recombinase
	JEONG1266_07730	0	27	4.429470	replication protein
	JEONG1266_07735	0	29	4.525043	hypothetical protein
	JEONG1266_07740	5	31	-0.543241	derepression protein
	JEONG1266_07745	5	31	-2.143333	hypothetical protein
	JEONG1266_07750	4	30	-3.044669	MarR family transcriptional regulator
	JEONG1266_07755	1	32	-5.263790	hypothetical protein
	JEONG1266_07760	0	33	-6.498757	hypothetical protein
	JEONG1266_07765	1	34	-7.742538	hypothetical protein
	JEONG1266_07770	-1	33	-6.673848	DUF4754 domain-containing protein
	JEONG1266_07775	-2	33	-6.230560	hypothetical protein
	JEONG1266_07780	0	34	-7.556060	DUF4761 domain-containing protein
	JEONG1266_07785	-1	41	-8.772017	DNA-binding protein
	JEONG1266_07790	2	48	-8.641134	hypothetical protein
	JEONG1266_07795	1	41	-6.509909	transcriptional regulator
	JEONG1266_07800	-1	35	-5.071719	hypothetical protein
	JEONG1266_07805	-1	33	-4.837544	hypothetical protein
	JEONG1266_07810	0	26	-4.398066	integrase
	JEONG1266_07815	0	22	-3.121807	hypothetical protein
	JEONG1266_07820	0	18	-2.284890	tyrosine transporter TyrP
	JEONG1266_07825	1	18	-3.300663	hypothetical protein
	JEONG1266_07830	2	21	-5.162310	ferritin
	JEONG1266_07835	-1	17	-3.273173	hypothetical protein
	1479#JEONG1266_07805	STREPKINASE#Streptococcus streptokinase protein signature.	28	0.033
		>STREPKINASE#Streptococcus streptokinase protein signature.
		          Length = 440
		
		 Score = 27.8 bits (61), Expect = 0.033
		 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
		
		Query: 15  RDFHEKNIQ--IERYDGSHTVNIAIPSNNDDDDRPLLKAQR 53
		           R + EK IQ   +  D  +TV    P N DDD RP LK  +
		Sbjct: 170 RPYKEKPIQNQAKSVDVEYTVQF-TPLNPDDDFRPGLKDTK 209
		
		
	1482#JEONG1266_07820	SECA#SecA protein signature.	60	8e-13
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 60.3 bits (146), Expect = 8e-13
		 Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
		
		Query: 155 RVEKMSPEAFEESVDAIRLAALDLH---AYWMAHPQEKAVQQPI--KAEEKPGRNDPCPC 209
		           +V+   PE  EE     R+ A  L              A         E K GRNDPCPC
		Sbjct: 828 KVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPC 887
		
		Query: 210 GSGKKFKQCC 219
		           GSGKK+KQC 
		Sbjct: 888 GSGKKYKQCH 897
		
		
JEONG1266_08385	JEONG1266_08525	Y	Y	N	JEONG1266_08310	JEONG1266_08505
	JEONG1266_08385	0	21	-3.031375	LysR family transcriptional regulator
	JEONG1266_08390	-2	19	-4.536153	leucine efflux protein LeuE
	JEONG1266_08395	0	21	-3.319213	hypothetical protein
	JEONG1266_08400	-1	21	-2.773633	hypothetical protein
	JEONG1266_08405	-1	22	-1.080595	hypothetical protein
	JEONG1266_08410	-2	22	-0.894113	hypothetical protein
	JEONG1266_08415	-1	21	-0.261687	diguanylate cyclase
	JEONG1266_08420	0	24	0.409035	hypothetical protein
	JEONG1266_08425	-1	23	0.284293	hypothetical protein
	JEONG1266_08430	-2	20	-1.675807	AraC family transcriptional regulator
	JEONG1266_08435	-3	22	-5.521949	hypothetical protein
	JEONG1266_08440	-3	18	-5.321101	hypothetical protein
	JEONG1266_08445	-2	14	-4.806235	hypothetical protein
	JEONG1266_08450	-2	12	-4.251155	diguanylate cylase
	JEONG1266_08455	-2	12	-4.080191	hypothetical protein
	JEONG1266_08460	-2	11	-3.448076	hypothetical protein
	JEONG1266_08465	0	18	-1.329661	PrkA family serine protein kinase
	JEONG1266_08470	1	20	-1.300725	MltA-interacting protein MipA
	JEONG1266_08475	0	26	-1.475671	hypothetical protein
	JEONG1266_08480	-1	22	-1.790300	D-hexose-6-phosphate mutarotase
	JEONG1266_08485	-2	19	-2.170399	type I glyceraldehyde-3-phosphate dehydrogenase
	JEONG1266_08490	-2	18	-2.816071	peptide-methionine (R)-S-oxide reductase
	JEONG1266_08495	0	19	-3.583334	hypothetical protein
	JEONG1266_08500	0	20	-4.012810	alcohol dehydrogenase
	JEONG1266_08505	0	19	-3.858886	transporter
	JEONG1266_08510	-1	22	-4.961449	alcohol dehydrogenase
	JEONG1266_08515	-2	20	-4.426977	hypothetical protein
	JEONG1266_08520	-2	19	-3.883421	sugar kinase
	JEONG1266_08525	-2	20	-4.063038	oxidoreductase
	1599#JEONG1266_08405	HTHTETR#TetR bacterial regulatory protein HTH signature.	30	6e-04
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 30.0 bits (67), Expect = 6e-04
		 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
		
		Query: 4   LSWIIFGLIAGILAKWIMPG-----KDGGGFFMTILL 35
		            + I+ G I+G++  W+        K     ++ ILL
		Sbjct: 163 AAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILL 199
		
		
	1605#JEONG1266_08440	PRTACTNFAMLY#Pertactin virulence factor family signature.	28	0.021
		>PRTACTNFAMLY#Pertactin virulence factor family signature.
		          Length = 910
		
		 Score = 27.7 bits (61), Expect = 0.021
		 Identities = 18/61 (29%), Positives = 26/61 (42%)
		
		Query: 49  QGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRGVTLMGS 108
		           Q  +I    L IG +  +    LPPS ++    N  ++ A      VS LG   +TL G 
		Sbjct: 174 QRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGG 233
		
		Query: 109 Q 109
		            
		Sbjct: 234 H 234
		
		
	1614#JEONG1266_08485	INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signat...	29	0.023
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)
		           signature.
		          Length = 372
		
		 Score = 28.9 bits (64), Expect = 0.023
		 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
		
		Query: 158 ETTSALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKED-----------VLTDGIQTFPDR 206
		           E ++AL  + N  D  K S S L + F ++V + +             V    ++ F  +
		Sbjct: 57  EMSAALAQFRNRRDYEKKS-SNLSNSF-ERVLEDEALPKAKQILKLISVHGGALEDFLRQ 114
		
		Query: 207 TDRVYLNPQDCSVINDEALNR 227
		              ++ +P D  ++  E L R
		Sbjct: 115 ARSLFPDPSDLVLVLRELLRR 135
		
		
	1619#JEONG1266_08510	TCRTETB#Tetracycline resistance protein TetB signature.	31	0.011
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 31.0 bits (70), Expect = 0.011
		 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 23/142 (16%)
		
		Query: 71  MFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDF-LIACRFVMGVGLGALL 129
		             +G  V G + D+ G +   +    I+    V+G    +    LI  RF+ G G  A  
		Sbjct: 62  FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121
		
		Query: 130 VTLFAGFTEYMPGRNR----GTWSSRVSFIGNWSYPLCSLIAMGLTPLISA----EWNWR 181
		             +      Y+P  NR    G   S V+            +  G+ P I        +W 
		Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVA------------MGEGVGPAIGGMIAHYIHWS 169
		
		Query: 182 VQLLIPAILSLIATALAWRYFP 203
		             LLIP I   I T        
		Sbjct: 170 YLLLIPMI--TIITVPFLMKLL 189
		
		
JEONG1266_08625	JEONG1266_08835	Y	N	N	JEONG1266_08545	JEONG1266_08745
	JEONG1266_08625	1	13	3.043633	thiosulfate sulfurtransferase
	JEONG1266_08630	1	12	2.849889	sulfate ABC transporter ATP-binding protein
	JEONG1266_08635	1	13	2.217864	thiamine ABC transporter permease
	JEONG1266_08640	1	15	1.794744	hypothetical protein
	JEONG1266_08645	1	15	0.900609	hypothetical protein
	JEONG1266_08650	-1	13	0.573072	hypothetical protein
	JEONG1266_08655	-1	13	0.801948	hypothetical protein
	JEONG1266_08660	0	11	2.345866	hypothetical protein
	JEONG1266_08665	-1	12	3.183052	exodeoxyribonuclease III
	JEONG1266_08670	-1	12	3.808242	acetylornithine aminotransferase
	JEONG1266_08675	-1	11	3.664613	arginine N-succinyltransferase
	JEONG1266_08680	0	12	3.511178	succinylglutamate-semialdehyde dehydrogenase
	JEONG1266_08685	0	12	2.865082	succinylarginine dihydrolase
	JEONG1266_08690	0	14	1.252256	succinylglutamate desuccinylase
	JEONG1266_08695	0	14	-0.279086	ATP-independent periplasmic protein-refolding
	JEONG1266_08700	0	15	-1.294065	hypothetical protein
	JEONG1266_08705	0	18	-2.007192	endonuclease
	JEONG1266_08710	1	18	-2.411664	hypothetical protein
	JEONG1266_08715	0	18	-3.046930	NAD(+) synthase
	JEONG1266_08720	0	17	-4.396342	transcriptional regulator
	JEONG1266_08725	0	17	-4.778071	PTS sugar transporter subunit IIB
	JEONG1266_08730	0	18	-4.423493	PTS system, cellobiose-specific IIC component
	JEONG1266_08735	-2	12	-2.837902	PTS N N'-diacetylchitobiose transporter subunit
	JEONG1266_08740	-3	13	-2.746085	transcriptional regulator
	JEONG1266_08745	-2	15	-4.573689	6-phospho-beta-glucosidase
	JEONG1266_08750	-3	13	-2.713581	hypothetical protein
	JEONG1266_08755	-2	14	-2.164979	catalase HPII
	JEONG1266_08760	-2	15	-1.988710	cell division modulator
	JEONG1266_08765	-1	17	-3.792019	hypothetical protein
	JEONG1266_08770	-1	18	-3.313063	L-cystine transporter tcyP
	JEONG1266_08775	0	16	-1.120500	hypothetical protein
	JEONG1266_08785	-1	19	-1.239472	2-deoxyglucose-6-phosphatase
	JEONG1266_08790	0	18	-1.609692	hypothetical protein
	JEONG1266_08795	0	26	-5.071488	hypothetical protein
	JEONG1266_08800	-1	19	-4.718359	hypothetical protein
	JEONG1266_08805	-2	18	-4.425708	6-phosphofructokinase II
	JEONG1266_08810	-2	20	-5.515539	hypothetical protein
	JEONG1266_08815	-1	22	-5.854185	hypothetical protein
	JEONG1266_08820	-1	22	-5.855439	hypothetical protein
	JEONG1266_08825	4	26	-0.914768	threonine--tRNA ligase
	JEONG1266_08830	3	29	1.137922	translation initiation factor IF-3
	JEONG1266_08835	3	30	1.461096	50S ribosomal protein L35
JEONG1266_08940	JEONG1266_08965	Y	N	N	JEONG1266_08865	JEONG1266_09070
	JEONG1266_08940	-2	17	-3.398283	hypothetical protein
	JEONG1266_08945	0	18	-3.967345	AraC family transcriptional regulator
	JEONG1266_08950	0	17	-4.148786	acyl-CoA dehydrogenase
	JEONG1266_08955	0	17	-3.894165	acetate CoA-transferase YdiF
	JEONG1266_08960	1	19	-4.691950	3-dehydroquinate dehydratase
	JEONG1266_08965	2	15	-3.325677	quinate/shikimate dehydrogenase
JEONG1266_09525	JEONG1266_09630	Y	Y	Y	JEONG1266_09450	JEONG1266_09655
	JEONG1266_09525	-3	22	-4.591738	spermidine acetyltransferase
	JEONG1266_09530	-2	22	-5.713193	hypothetical protein
	JEONG1266_09535	0	20	-4.164082	hypothetical protein
	JEONG1266_09540	-1	19	-2.539841	DNA-binding protein
	JEONG1266_09545	0	17	-2.272600	transposase
	JEONG1266_09550	0	20	-2.268612	transposase
	JEONG1266_09560	0	19	-1.634008	hypothetical protein
	JEONG1266_28175	0	21	-1.230631	cell division inhibition protein DicB
	JEONG1266_09575	1	30	-4.150318	hypothetical protein
	JEONG1266_09580	0	37	-6.583157	hypothetical protein
	JEONG1266_09585	0	35	-5.987919	hypothetical protein
	JEONG1266_09590	2	31	-4.362061	plasmid stabilization protein ParE
	JEONG1266_09595	2	38	-4.541466	stability determinant
	JEONG1266_09600	0	28	-2.849391	repressor
	JEONG1266_09605	0	22	-1.545306	XRE family transcriptional regulator
	JEONG1266_09610	3	19	0.047331	Rha family transcriptional regulator
	JEONG1266_09615	3	20	0.054169	DNA-binding protein
	JEONG1266_09620	2	18	0.768229	DNA replication protein DnaC
	JEONG1266_09625	2	19	0.991519	DNA-binding protein
	JEONG1266_09630	2	21	-0.092584	hypothetical protein
	1817#JEONG1266_09535	SACTRNSFRASE#Streptothricin acetyltransferase signature.	40	1e-06
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 40.3 bits (94), Expect = 1e-06
		 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
		
		Query: 34  FEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISP 92
		           F +PY    E  D+   ++ ++ +  F+   +    G +++    + +  A  + I ++ 
		Sbjct: 42  FSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRS--NWNGYALIEDIAVAK 99
		
		Query: 93  EYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEG 144
		           +Y+ KG+ T     A+++     +   L L     N  A H Y K  F +  
		Sbjct: 100 DYRKKGVGTALLHKAIEWAKEN-HFCGLMLETQDINISACHFYAKHHFIIGA 150
		
		
JEONG1266_09705	JEONG1266_10290	Y	Y	Y	JEONG1266_09615	JEONG1266_09840
	JEONG1266_09705	2	27	2.497405	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_09710	4	27	2.056528	holin
	JEONG1266_09715	2	25	2.363019	hypothetical protein
	JEONG1266_09720	2	22	1.528138	lysozyme
	JEONG1266_09725	1	21	-0.058832	antirepressor
	JEONG1266_09730	0	24	-0.630776	endopeptidase
	JEONG1266_09735	1	21	-0.109854	hypothetical protein
	JEONG1266_09740	1	22	0.394526	HNH nuclease
	JEONG1266_09745	1	25	0.328219	hypothetical protein
	JEONG1266_09750	3	25	4.128039	terminase
	JEONG1266_09755	4	28	5.807270	terminase
	JEONG1266_09760	4	30	6.404185	phage capsid protein
	JEONG1266_09770	4	31	6.106305	hypothetical protein
	JEONG1266_09775	6	31	6.345547	phage portal protein
	JEONG1266_09785	6	30	5.557912	DNA-packaging protein
	JEONG1266_09790	6	29	5.162228	head-tail adaptor protein
	JEONG1266_09795	8	31	5.346000	hypothetical protein
	JEONG1266_09805	4	31	5.695816	hypothetical protein
	JEONG1266_09810	5	33	5.584210	phage tail protein
	JEONG1266_09815	4	33	5.522590	phage tail protein
	JEONG1266_09820	5	31	6.027854	phage tail protein
	JEONG1266_09825	5	31	5.826828	phage tail tape measure protein
	JEONG1266_09830	4	30	5.710012	phage tail protein
	JEONG1266_09835	5	29	6.185325	phage tail protein
	JEONG1266_09840	4	28	5.891264	hypothetical protein
	JEONG1266_09845	4	25	4.438625	enterobacterial Ail/Lom family protein
	JEONG1266_09850	1	26	0.269812	phage tail protein
	JEONG1266_09855	1	28	-2.545710	phage tail protein
	JEONG1266_09860	3	30	-3.499578	T3SS effector NleG
	JEONG1266_09865	0	20	-3.007741	hypothetical protein
	JEONG1266_09870	0	19	-2.180004	hypothetical protein
	JEONG1266_09875	1	22	-0.917327	transposase
	JEONG1266_09880	1	22	0.952162	transposase
	JEONG1266_09885	2	24	4.105506	isocitrate lyase
	JEONG1266_09890	2	23	2.900609	transposase
	JEONG1266_09895	2	24	-1.523633	transposase
	JEONG1266_09900	2	25	-3.086682	damage-inducible protein DinI
	JEONG1266_09905	1	24	-4.333048	exonuclease
	JEONG1266_09910	2	28	-4.415566	hypothetical protein
	JEONG1266_09915	1	31	-5.153432	cell division inhibitor
	JEONG1266_09920	1	32	-6.232978	hypothetical protein
	JEONG1266_09925	1	36	-8.172725	hypothetical protein
	JEONG1266_09930	0	35	-7.990949	hypothetical protein
	JEONG1266_09935	0	35	-7.109341	hypothetical protein
	JEONG1266_09945	1	25	-3.027509	repressor
	JEONG1266_09950	1	25	-0.410306	hypothetical protein
	JEONG1266_09955	1	24	0.509586	Rha family transcriptional regulator
	JEONG1266_09960	1	23	2.128680	phage replisome organizer
	JEONG1266_09965	1	25	2.290470	replication protein
	JEONG1266_09970	2	26	1.470379	hypothetical protein
	JEONG1266_09975	0	27	-0.767099	DNA-binding protein
	JEONG1266_09980	1	26	-1.912234	hypothetical protein
	JEONG1266_09985	3	30	-3.951889	hypothetical protein
	JEONG1266_09990	3	27	-5.176966	sugar acetyltransferase inhibitor
	JEONG1266_09995	3	27	-4.596550	hypothetical protein
	JEONG1266_10000	0	24	-1.598878	hypothetical protein
	JEONG1266_10005	0	23	-0.230373	TIGR00156 family protein
	JEONG1266_10010	-1	23	-1.231875	hypothetical protein
	JEONG1266_10015	-1	23	-1.453458	hypothetical protein
	JEONG1266_10020	-2	23	-1.895440	endodeoxyribonuclease
	JEONG1266_10025	-3	21	-1.954137	antiterminator
	JEONG1266_10030	-1	24	-3.548949	hypothetical protein
	JEONG1266_10035	1	23	-0.284808	transcriptional regulator
	JEONG1266_10040	2	23	0.605839	**tellurite resistance protein
	JEONG1266_10045	3	26	1.087869	hypothetical protein
	JEONG1266_10060	4	29	4.139797	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_10065	5	28	4.857678	hypothetical protein
	JEONG1266_10075	4	33	5.121647	holin
	JEONG1266_10080	5	34	5.340823	major capsid protein
	JEONG1266_10085	7	31	5.595295	hypothetical protein
	JEONG1266_10090	6	29	4.882164	phage portal protein
	JEONG1266_10095	6	28	5.179418	phage portal protein
	JEONG1266_10100	8	27	4.818247	DNA-packaging protein
	JEONG1266_10105	8	31	4.916648	head-tail adaptor protein
	JEONG1266_10110	7	32	5.369494	hypothetical protein
	JEONG1266_10115	4	31	5.473964	hypothetical protein
	JEONG1266_10120	5	33	5.376819	phage tail protein
	JEONG1266_10125	5	33	5.263217	phage tail protein
	JEONG1266_10130	5	34	5.873025	phage tail protein
	JEONG1266_10135	4	33	6.179588	phage tail tape measure protein
	JEONG1266_10140	5	33	6.376935	phage tail protein
	JEONG1266_10145	7	35	6.263315	phage minor tail protein L
	JEONG1266_10155	6	32	6.674857	phage tail protein
	JEONG1266_10160	6	32	6.413561	phage tail protein
	JEONG1266_10165	6	28	4.889999	enterobacterial Ail/Lom family protein
	JEONG1266_10170	5	26	2.885307	phage tail protein
	JEONG1266_10175	3	31	-1.628785	phage tail protein
	JEONG1266_10180	5	36	-3.033454	T3SS effector NleG
	JEONG1266_10185	3	34	-8.104526	T3SS effector protein NleG8
	JEONG1266_10190	0	30	-6.423021	T3SS effector NleG
	JEONG1266_10195	-1	26	-5.714109	damage-inducible protein DinI
	JEONG1266_10200	-2	22	-4.344146	symporter
	JEONG1266_10205	-2	17	-2.307947	D-mannonate oxidoreductase
	JEONG1266_10210	-1	18	-1.998046	selenoprotein YdfZ
	JEONG1266_10215	-1	16	-1.400045	GntR family transcriptional regulator
	JEONG1266_10220	0	18	-1.675939	NAD(P)-dependent oxidoreductase
	JEONG1266_10225	-1	19	-2.668816	dipeptidyl carboxypeptidase
	JEONG1266_10230	0	21	-3.058160	hypothetical protein
	JEONG1266_10235	0	20	-3.001964	TIGR00156 family protein
	JEONG1266_10240	-1	23	-3.470105	diguanylate cyclase
	JEONG1266_10245	-1	22	-3.229471	hypothetical protein
	JEONG1266_10250	-1	19	-2.688508	transcriptional regulator FtrA
	JEONG1266_10255	0	19	-1.470890	rhodanese
	JEONG1266_10260	-2	18	-1.597162	transporter
	JEONG1266_10265	-2	16	-1.949527	acetylserine transporter
	JEONG1266_10270	-1	16	-2.024688	hypothetical protein
	JEONG1266_10275	0	16	-1.615860	transcriptional regulator
	JEONG1266_10280	1	18	-2.550489	transcriptional regulator
	JEONG1266_10285	0	19	-4.776645	stress protection protein MarC
	JEONG1266_10290	0	18	-3.307238	sugar transporter
	1873#JEONG1266_09855	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	4e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (350), Expect = 4e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGLVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	1874#JEONG1266_09860	CHANLCOLICIN#Channel forming colicin signature.	30	0.018
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 30.0 bits (67), Expect = 0.018
		 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
		
		Query: 130 SARNAGISASQAEESAANADTSAGDASESARQAAESAAAAKQSEEASSSSASAAAQKASE 189
		           S    G   S++E SAA   T+    ++  +  AE AA AK         A+A AQ  ++
		Sbjct: 34  SGGGGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAK---------AAAEAQAKAK 84
		
		Query: 190 SSQSAADAELSKKTAESAAGNAARDATTATEKARESAESAQSAEQSRIA-AEEAVNRI 246
		           +++ A    L     E+   NA+R  +        +A      E+ R+A AEE   + 
		Sbjct: 85  ANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKE 142
		
		
		
		 Score = 29.7 bits (66), Expect = 0.025
		 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 6/147 (4%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR 160
		           E  R+     E+A + AE+ +K     E +     +  ++AEE    A +    A E   
		Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIER-EKAETERQLKLAEAEEKRLAALSEEAKAVE--- 192
		
		Query: 161 QAAESAAAAKQSEEASSSSASAAAQKASESSQSAADAELSKKTAESAAGNAARDATTATE 220
		             A+   +A QSE                SS  A DAE+     +      A       +
		Sbjct: 193 -IAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELD 251
		
		Query: 221 KARES-AESAQSAEQSRIAAEEAVNRI 246
		           +  +  +  A    Q+R   E    R+
		Sbjct: 252 ELVKKLSPRANDPLQNRPFFEATRRRV 278
		
		
	1892#JEONG1266_09955	PF07675#Cleaved Adhesin	28	0.033
		>PF07675#Cleaved Adhesin
		          Length = 1358
		
		 Score = 28.1 bits (62), Expect = 0.033
		 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
		
		Query: 116 IPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPDRIVQPGNIVLALPKGTTTPVIRKLE 175
		           I A+  + V  S      G GV+  +G        +I + GN  + + +    PVI++++
		Sbjct: 267 IQASAGSYVAISKDGVLYGTGVANASGVATVNMTKQITENGNYDVVITRSNYLPVIKQIQ 326
		
		Query: 176 IEGPDILLVPTNP 188
		              P     P  P
		Sbjct: 327 AGEPS----PYQP 335
		
		
	1903#JEONG1266_10010	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	62	2e-17
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 62.2 bits (151), Expect = 2e-17
		 Identities = 20/48 (41%), Positives = 34/48 (70%)
		
		Query: 23 QKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70
		          + +++  ++++CLT+++   +TRK LCE+R R G  EVA F+ YES K
		Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52
		
		
	1932#JEONG1266_10175	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	4e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (350), Expect = 4e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGLVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	1933#JEONG1266_10180	CHANLCOLICIN#Channel forming colicin signature.	31	0.009
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 31.2 bits (70), Expect = 0.009
		 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 20/163 (12%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR 160
		           EA  +    + E A+  E A+K    A+ S         +   S  ++   A DA     
		Sbjct: 175 EAEEKRLAALSEEAKAVEIAQKKLSAAQ-SEVVKMDGEIKTLNSRLSSSIHARDAEMKTL 233
		
		Query: 161 QAAE-SAAAAKQSEEASSSSASAAAQKASESLQS----------------ATDAELSKKT 203
		                  A A    +         + +A++ LQ+                  + +     
		Sbjct: 234 AGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTA 293
		
		Query: 204 AESAAGNAARDATTAAEKARESAESAQSAEQSRIA-AEEAVNR 245
		           +E+   N      T  +KA     + ++A  +R+  AEE + +
		Sbjct: 294 SETRI-NRINADITQIQKAISQVSNNRNAGIARVHEAEENLKK 335
		
		
		
		 Score = 29.3 bits (65), Expect = 0.033
		 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
		
		Query: 130 SARNAGISASQAEESAANADTSAGDASESARQAAESAAAAKQSEEASSSSASAAAQKASE 189
		           S    G   S++E SAA   T+    ++  +  AE AA AK         A+A AQ  ++
		Sbjct: 34  SGGGGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAK---------AAAEAQAKAK 84
		
		Query: 190 SLQSATDAELSKKTAESAAGNAARDATTAAEKARESAESAQSAEQSRIA-AEEAVNRI 246
		           + + A    L     E+   NA+R  +        +A      E+ R+A AEE   + 
		Sbjct: 85  ANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKE 142
		
		
		
		 Score = 29.3 bits (65), Expect = 0.035
		 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR 160
		           E  R+     E+A + AE+ +K     E +     +  ++AEE    A +    A E   
		Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIER-EKAETERQLKLAEAEEKRLAALSEEAKAVE--- 192
		
		Query: 161 QAAESAAAAKQSEEASSSSASAAAQKASESLQSATDAE---LSKKTAESAAGNAARDATT 217
		             A+   +A QSE                S   A DAE   L+ K  E A  +A      
		Sbjct: 193 -IAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELD 251
		
		Query: 218 AAEKARESAESAQSAEQSRIAAEEAVNRI 246
		              K    +  A    Q+R   E    R+
		Sbjct: 252 ELVKK--LSPRANDPLQNRPFFEATRRRV 278
		
		
	1939#JEONG1266_10210	TCRTETB#Tetracycline resistance protein TetB signature.	48	4e-08
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 48.3 bits (115), Expect = 4e-08
		 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
		
		Query: 44  VGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLG 103
		           +G  ++GK+ D++G K++L   I +    + +  V  ++  + + A       R IQG G
		Sbjct: 64  IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMA-------RFIQGAG 116
		
		Query: 104 AGAEISGAGTMLAEYAPKGKR----GIISSFVAMGTNCGTLSATAI-----WAFMFFI 152
		           A A  +    ++A Y PK  R    G+I S VAMG   G      I     W+++  I
		Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
		
		
	1943#JEONG1266_10230	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	100	1e-27
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  100 bits (249), Expect = 1e-27
		 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
		
		Query: 2   IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ---LDVRNR 58
		           I  +TGA  G GE + R    QG  + A     E+L+++   L      A+    DVR+ 
		Sbjct: 10  IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69
		
		Query: 59  AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASIEDWETMIDTNNKGLVYMTRAVL 118
		           AAI+E+ A +  E   IDILVN AG+ L     H  S E+WE     N+ G+   +R+V 
		Sbjct: 70  AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128
		
		Query: 119 PGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPG 178
		             M++R  G I+ +GS     P      Y ++KA    F+  L  +L    +R   + PG
		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
		
		Query: 179 LVGGTEFSNVRFKGDDGKAE------KTYQNTVALT----PEDVSEAV-WWVSTLPAHVN 227
		               T+     +  ++G  +      +T++  + L     P D+++AV + VS    H+ 
		Sbjct: 189 ST-ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247
		
		Query: 228 INTL 231
		           ++ L
		Sbjct: 248 MHNL 251
		
		
	1949#JEONG1266_10260	TRNSINTIMINR#Translocated intimin receptor (Tir) signature.	30	0.009
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.
		          Length = 549
		
		 Score = 30.5 bits (68), Expect = 0.009
		 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
		
		Query: 131 QRKATTHWRYTEQLQHRYPSISVSDNVLYQDEGQVMTSAGSAAGIDLCLHIVRKDFGHEI 190
		           +  A    RY +Q   R   + +S  + Y     ++ + G  AG+   LH  R++   E 
		Sbjct: 338 ESNAQAQQRYEDQHARRQEELQLSSGIGYGLSSALIVAGGIGAGVTTALH--RRNQPAEQ 395
		
		Query: 191 ANNVARRLVIQPHRQGDQPQNLTRPMASPRESQTLGALFDFLQQNLAQTHTVSSLAERVN 250
		                   V+Q    G     +      P+E +      D  Q ++A TH   S +E VN
		Sbjct: 396 TTTTTTHTVVQQQTGGIPQHKVAL---MPQERRRFSDRRDS-QGSVASTHWSDSSSEVVN 451
		
		
	1951#JEONG1266_10270	TCRTETA#Tetracycline resistance protein signature.	41	8e-06
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 40.6 bits (95), Expect = 8e-06
		 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 18/239 (7%)
		
		Query: 7   RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGF 63
		           R    +L++  L  +G G  +P +   L R    S D+    G  + +   +    +   
		Sbjct: 5   RPLIVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVL 63
		
		Query: 64  GILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFAD 123
		           G L+D+F ++  +L+++   A  +  +     + ++ +   +     +  A    A+ AD
		Sbjct: 64  GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIAD 122
		
		Query: 124 NLSSTSKTKIFSINYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPMFFIQIWVK 183
		                 + + F         G   GP LG L+   S + PF+ AA  +          + 
		Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182
		
		Query: 184 RSEK---------IIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYV 233
		            S K          +       W     +   A L      F+   V    A+    + 
		Sbjct: 183 ESHKGERRPLRREALNPLASFRW--ARGMTVVAALMAV--FFIMQLVGQVPAALWVIFG 237
		
		
		
		 Score = 31.3 bits (71), Expect = 0.006
		 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 2/155 (1%)
		
		Query: 7   RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVF-SLGFGI 65
		              +AL+A   ++ +          I+   ++      IG ++     +  +  ++  G 
		Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269
		
		Query: 66  LADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNL 125
		           +A +  ++R ++L + A  +G+I +       +      L+     +    L+A  +  +
		Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQV 328
		
		Query: 126 SSTSKTKIFSINYTMLNIGWTVGPPLGTLLVMQSI 160
		               + ++      + ++   VGP L T +   SI
		Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASI 363
		
		
	1957#JEONG1266_10300	TCRTETB#Tetracycline resistance protein TetB signature.	53	9e-10
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 53.0 bits (127), Expect = 9e-10
		 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 8/192 (4%)
		
		Query: 36  LSDIAQSFHMQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLS 95
		           L DIA  F+   A    + T +    ++ +  +  ++ Q+  ++LL+   ++     V+ 
		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96
		
		Query: 96  FLSWS-FTVLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGL 154
		           F+  S F++L+++R       A F ++   +  R  P   R +A  LI +  A+   +G 
		Sbjct: 97  FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156
		
		Query: 155 PLGRIVGQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSI 214
		            +G ++  Y  W      I +  +IT+  L+KLL                  +   LMS+
		Sbjct: 157 AIGGMIAHYIHWSY-LLLIPMITIITVPFLMKLLK------KEVRIKGHFDIKGIILMSV 209
		
		Query: 215 YLLTVVVVTAHY 226
		            ++  ++ T  Y
		Sbjct: 210 GIVFFMLFTTSY 221
		
		
JEONG1266_10400	JEONG1266_10485	Y	Y	N	JEONG1266_10320	JEONG1266_10525
	JEONG1266_10400	2	20	-2.152736	autotransporter outer membrane beta-barrel
	JEONG1266_10410	0	29	-6.139018	transcriptional regulator
	JEONG1266_10415	1	31	-6.433219	fimbrial protein
	JEONG1266_10420	3	31	-6.534693	fimbrial chaperone protein FimC
	JEONG1266_10425	1	26	-5.151975	fimbrial protein
	JEONG1266_10430	1	26	-5.365441	fimbrial protein
	JEONG1266_10435	0	24	-5.512072	fimbrial protein
	JEONG1266_10440	0	25	-5.888130	fimbrial protein
	JEONG1266_10445	0	25	-6.926847	oxidoreductase
	JEONG1266_10450	-1	23	-7.176267	Two-protein-system connector protein SafA
	JEONG1266_10455	-1	21	-8.356378	transcriptional regulator YdeO
	JEONG1266_10460	-2	20	-7.303952	sulfatase
	JEONG1266_10465	-2	20	-7.110458	anaerobic sulfatase maturase
	JEONG1266_10470	-2	14	-5.738856	multidrug ABC transporter ATP-binding protein
	JEONG1266_10475	-2	13	-4.558067	hypothetical protein
	JEONG1266_10480	-2	13	-3.252186	zinc protease
	JEONG1266_10485	-3	14	-3.217739	hypothetical protein
	1978#JEONG1266_10405	PRTACTNFAMLY#Pertactin virulence factor family signature.	114	4e-29
		>PRTACTNFAMLY#Pertactin virulence factor family signature.
		          Length = 910
		
		 Score =  114 bits (286), Expect = 4e-29
		 Identities = 118/467 (25%), Positives = 176/467 (37%), Gaps = 59/467 (12%)
		
		Query: 22  NGLMTFNATLGGDNSPTDKMNVKGDTQGNTRVRVDNIGGVGAQTVNGIELIEVGGNSAGN 81
		           +GL   N     D   +DK+ V  D  G  R+ V N G     + N + L++    SA  
		Sbjct: 481 SGLFRMNVFA--DLGLSDKLVVMQDASGQHRLWVRNSGS-EPASANTLLLVQTPLGSAAT 537
		
		Query: 82  FALTT--GTVEAGAYVYTLAKGKGNDEKNWYLTSKWDGVTPADTPDPINNPPVVDPEGPS 139
		           F L    G V+ G Y Y LA    N    W L        P   P P   PP      P 
		Sbjct: 538 FTLANKDGKVDIGTYRYRLAA---NGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPE 594
		
		Query: 140 --VYRPEAGSYIS----------NIAAANSLF---SHRLHDRLGEPQYTDSLHSQDSASS 184
		               +P AG  +S           +  A++L+   S+ L  RLGE      L     A  
		Sbjct: 595 APAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGE------LRLNPDAGG 648
		
		Query: 185 MWMRHVGGHERSSAGDGQLNTQANRYVLQLGGDLAQWSSNAQDRWHLGVMAGYANQHSNT 244
		            W R     ++     G+   Q      +LG D A   + A  RWHLG +AGY       
		Sbjct: 649 AWGRGFAQRQQLDNRAGRRFDQ-KVAGFELGADHA--VAVAGGRWHLGGLAGYTR----- 700
		
		Query: 245 QSNRVGYKSDGRISGYSAGLYATWYQNDANKTGAYVDSWALYNWFDNSV---SSDNRSAD 301
		                G+  DG   G++  ++   Y      +G Y+D+    +  +N      SD  +  
		Sbjct: 701 --GDRGFTGDG--GGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVK 756
		
		Query: 302 -DYDSRGVTASVEGGYTFEAGTCSGSEGTLNTWYVQPQAQITWMGVKDSDHARKDGTRIE 360
		             Y + GV AS+E G  F            + W+++PQA++         +   +G R+ 
		Sbjct: 757 GKYRTHGVGASLEAGRRFTHA---------DGWFLEPQAELAVFRAGGGAYRAANGLRVR 807
		
		Query: 361 TEGDGNVQTRLGVKTYLNSHHQRDDGKQREFQPYIEANWINNSK-VYAVKMNGQTVSRDG 419
		            EG  +V  RLG    L    + +    R+ QPYI+A+ +        V  NG     + 
		Sbjct: 808 DEGGSSVLGRLG----LEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTEL 863
		
		Query: 420 ARNLGEVRTGVEAKVNNNLSLWGNVGVQLGDKGYSDTQGMLGVKYSW 466
		                E+  G+ A +    SL+ +     G K         G +YSW
		Sbjct: 864 RGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
		
		
	1982#JEONG1266_10430	PF00577#Outer membrane usher protein FimD	939	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  939 bits (2429), Expect = 0.0
		 Identities = 501/869 (57%), Positives = 653/869 (75%), Gaps = 10/869 (1%)
		
		Query: 15  QVLLLPRFARLTIALSLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYR 74
		           +  L   F RL +A + A       AE YFNPRFL++D     DLS F  G+E PPGTYR
		Sbjct: 20  KHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYR 79
		
		Query: 75  VDIYLNDEFMTSRDITFITDDNNADLIPCLSTDLLVSLGIKKSALLDNKEHSAEKHVPDN 134
		           VDIYLN+ +M +RD+TF T D+   ++PCL+   L S+G+  +++       +  ++  +
		Sbjct: 80  VDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASV-------SGMNLLAD 132
		
		Query: 135 SACTPLQDRLVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFN 194
		            AC PL   + DA+ + DVGQQ L+L++PQ ++   ARGY+ P+LW+ GINAGLLNY+F+
		Sbjct: 133 DACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFS 192
		
		Query: 195 GNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTS 254
		           GNS     N   G S+YAYLNLQSG+NIG+WRLRDN+TWSYNS  S+S   NKWQHINT 
		Sbjct: 193 GNS---VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTW 249
		
		Query: 255 AERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTA 314
		            ERDIIPLRSRLT+GD YT GDIFD +NFRG ++ S + MLPDSQ GFAPVIHGIARGTA
		Sbjct: 250 LERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309
		
		Query: 315 QVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQ 374
		           QV++KQNGYD+Y +TVPPGPFTI+DI +A N GDLQVTIKEADGS Q   VPYSSVP+LQ
		Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369
		
		Query: 375 RAGYTRYALAMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGK 434
		           R G+TRY++  GEYRSGN  Q  PRF Q +L+HGL   WT YGG Q+A+ Y+AFN GIGK
		Sbjct: 370 REGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGK 429
		
		Query: 435 DLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNL 494
		           ++G  GA S D+TQAN+TL D ++H GQSV+ +Y+KS  ++GTNIQ+ GYRYST G++N 
		Sbjct: 430 NMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNF 489
		
		Query: 495 SDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGATFFSASR 554
		           +D+ YSRM+GY ++   G    + +F DY+NL Y+KRG+ Q++++QQLG     + S S 
		Sbjct: 490 ADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSH 549
		
		Query: 555 QSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTD 614
		           Q+YW TS  D+Q   GLN  F DI  +L+YS + N WQ  RD +LA  +N+PFSHW+R+D
		Sbjct: 550 QTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSD 609
		
		Query: 615 SQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYS 674
		           S+S +R+++ASYSMS+DL G MTNL+GVYGTLL DNNL+YSVQ G   GG+ +SG++GY+
		Sbjct: 610 SKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYA 669
		
		Query: 675 TLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNV 734
		           TLNYRG YGN N+GYS S D  Q+YYG+SGG++AHA+G+T GQPL DT+VLVKAPGA + 
		Sbjct: 670 TLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDA 729
		
		Query: 735 KIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARAT 794
		           K+ENQTG+ TDWRGYA+LP+ATEYRENRVAL+ N+LADNV+LD  V  V+PT GAI RA 
		Sbjct: 730 KVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAE 789
		
		Query: 795 FNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGN 854
		           F A++G K+LMTL + NK +PFGA+VT   +++  IVA+NGQVYL+G+P +GK+QV WG 
		Sbjct: 790 FKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGE 849
		
		Query: 855 DKNSNCIVDYKLPEVSPGTLLNQQTAICR 883
		           ++N++C+ +Y+LP  S   LL Q +A CR
		Sbjct: 850 EENAHCVANYQLPPESQQQLLTQLSAECR 878
		
		
	1984#JEONG1266_10440	FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein...	34	1e-04
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein
		           signature.
		          Length = 167
		
		 Score = 33.9 bits (77), Expect = 1e-04
		 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
		
		Query: 16  LLTATLQAADVTITVNGRVVAKPCTIQT-KEANVNLGDLYTRNLQQPGSASGWHNITLSL 74
		           LLT+    ADV I + G V   PCTI   +   V+ G++   N +   ++ G     +S+
		Sbjct: 11  LLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNI---NPEHVDNSRGEVTKNISI 67
		
		Query: 75  TDCPAETSSVTAIVTGSTDNTGYYKNEGTAENI 107
		           + CP ++ S+   VTG+T   G  +N   A NI
		Sbjct: 68  S-CPYKSGSLWIKVTGNTMGVG--QNNVLATNI 97
		
		
JEONG1266_10660	JEONG1266_10695	Y	Y	N	JEONG1266_10580	JEONG1266_10785
	JEONG1266_10660	-1	25	-6.471550	flavin reductase
	JEONG1266_10665	2	31	-10.008906	4-oxalocrotonate tautomerase
	JEONG1266_10670	1	28	3.223739	hypothetical protein
	JEONG1266_10675	1	29	3.727685	hypothetical protein
	JEONG1266_10680	2	29	4.496646	hypothetical protein
	JEONG1266_10685	2	27	4.213202	hypothetical protein
	JEONG1266_10690	2	24	4.292428	RHS element protein
	JEONG1266_10695	2	22	4.210525	type IV secretion protein Rhs
	2028#JEONG1266_10665	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	27	0.024
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 27.3 bits (60), Expect = 0.024
		 Identities = 7/29 (24%), Positives = 13/29 (44%)
		
		Query: 119 WQFDDDKLNTLHHLGAGTFVTSGKRVTAG 147
		           W+  + + + L  +G GT +  G     G
		Sbjct: 437 WKVHNPQYDRLAKIGKGTLIVEGTGDNKG 465
		
		
JEONG1266_10885	JEONG1266_10940	Y	N	N	JEONG1266_10810	JEONG1266_11005
	JEONG1266_10885	-2	16	-3.072408	type I glyceraldehyde-3-phosphate dehydrogenase
	JEONG1266_10890	-1	17	-4.097804	aldehyde dehydrogenase
	JEONG1266_10895	-1	21	-5.212158	hypothetical protein
	JEONG1266_10900	-1	26	-7.026778	hypothetical protein
	JEONG1266_10905	0	14	-2.853463	hypothetical protein
	JEONG1266_10910	0	13	-2.854994	hypothetical protein
	JEONG1266_10915	-1	11	-2.000637	hypothetical protein
	JEONG1266_10920	-2	10	-0.918770	ATP-dependent RNA helicase HrpA
	JEONG1266_10925	-2	11	-0.934209	FMN-dependent NADH-azoreductase
	JEONG1266_10930	-3	11	-0.505695	hypothetical protein
	JEONG1266_10935	-3	25	-4.360370	hypothetical protein
	JEONG1266_10940	-3	27	-4.105611	hypothetical protein
JEONG1266_11085	JEONG1266_11120	Y	N	N	JEONG1266_11005	JEONG1266_11210
	JEONG1266_11085	-1	13	-3.045881	hypothetical protein
	JEONG1266_11090	-1	13	-3.741630	mechanosensitive ion channel protein MscS
	JEONG1266_11095	-2	17	-4.422629	oligopeptide ABC transporter substrate-binding
	JEONG1266_11105	-1	19	-4.647373	hypothetical protein
	JEONG1266_11110	-1	21	-3.721928	LysR family transcriptional regulator
	JEONG1266_11115	3	28	-4.782318	hypothetical protein
	JEONG1266_11120	2	25	-3.163378	dienelactone hydrolase
JEONG1266_11220	JEONG1266_11280	Y	Y	N	JEONG1266_11145	JEONG1266_11350
	JEONG1266_11220	-2	15	-3.027757	sugar ABC transporter substrate-binding protein
	JEONG1266_11225	-1	15	-3.690011	sugar phosphorylase
	JEONG1266_11230	-1	19	-4.407949	alpha-amylase
	JEONG1266_11235	-1	22	-4.949757	thiosulfate sulfurtransferase PspE
	JEONG1266_11240	1	16	-3.416523	phage shock protein D
	JEONG1266_11245	2	11	-0.711065	DNA-binding transcriptional activator PspC
	JEONG1266_11250	2	14	1.729055	phage shock protein B
	JEONG1266_11255	1	19	3.174002	phage shock protein PspA
	JEONG1266_11260	2	22	4.172998	phage shock protein operon transcriptional
	JEONG1266_11265	1	20	4.037264	4-aminobutyrate transaminase
	JEONG1266_11270	0	19	4.347579	gamma-glutamylputrescine oxidoreductase
	JEONG1266_11280	-3	17	3.355300	aldehyde dehydrogenase PuuC
	2143#JEONG1266_11260	MPTASEINHBTR#Metalloprotease inhibitor signature.	25	0.030
		>MPTASEINHBTR#Metalloprotease inhibitor signature.
		          Length = 122
		
		 Score = 24.6 bits (53), Expect = 0.030
		 Identities = 7/43 (16%), Positives = 17/43 (39%)
		
		Query: 30 SGRSELSQSEQQRLAQLADEAKRMRERIQALESILDAEHPNWR 72
		          +G+  +  +     A  A++A  +   +   E  L  +  +W 
		Sbjct: 37 AGQLGIEATGSGVCAGPAEQANALAGDVACAEQWLGDKPVSWS 79
		
		
	2145#JEONG1266_11270	HTHFIS#FIS bacterial regulatory protein HTH signature.	342	e-118
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score =  342 bits (880), Expect = e-118
		 Identities = 126/341 (36%), Positives = 182/341 (53%), Gaps = 23/341 (6%)
		
		Query: 6   DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65
		             L+G + +  E+   ++ L   D  ++I GE GTGKEL+A  LH    R  GPF+++N 
		Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINM 196
		
		Query: 66  AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125
		           AA+  +L++SELFGHE GAFTGAQ R  GRFE+A+GGTLFLDE+   PM  Q +LLRV++
		Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256
		
		Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185
		            GE   VGG  P++ +VR+V ATN DL   +N+G FR DL  RL    ++LPPLR+R  D
		Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAED 316
		
		Query: 186 IMLMAEHFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245
		           I  +  HF  Q  +E        F + A E +  + WPGN+REL+N+V R    +     
		Sbjct: 317 IPDLVRHFVQQAEKEGLDVK--RFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVI 374
		
		Query: 246 PLDDIIID---PFKRRPPEDAIAVSETTSLPTLPLD------------------LREFQM 284
		             + I  +        P E A A S + S+     +                        
		Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLA 434
		
		Query: 285 QQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325
		           + E  L+  +L   + NQ +AA+LLGL  +  R  +++  +
		Sbjct: 435 EMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
		
		
JEONG1266_11535	JEONG1266_12015	Y	Y	Y	JEONG1266_11460	JEONG1266_11660
	JEONG1266_11535	1	24	-5.105066	hypothetical protein
	JEONG1266_11540	2	32	-8.110300	hypothetical protein
	JEONG1266_11545	3	32	-9.747605	hypothetical protein
	JEONG1266_11550	3	38	-10.175503	hypothetical protein
	JEONG1266_28185	4	44	-10.707306	transposase
	JEONG1266_11560	4	38	-8.312145	transposase
	JEONG1266_11565	3	33	-6.439994	bfpT-regulated chaperone
	JEONG1266_11570	1	23	-1.352895	T3SS effector protein NleG8
	JEONG1266_11575	2	23	0.881719	secretion protein EspO
	JEONG1266_11580	2	27	3.103328	transposase
	JEONG1266_11585	2	25	1.698394	isocitrate lyase
	JEONG1266_11590	2	23	-1.702022	transposase
	JEONG1266_11595	3	26	-2.589456	transposase
	JEONG1266_11600	7	46	-8.476296	transposase
	JEONG1266_11605	7	49	-8.808319	type III effector
	JEONG1266_11610	7	44	-4.931828	T3SS effector protein NleH
	JEONG1266_11615	4	36	-2.953324	integrase
	JEONG1266_11620	3	23	1.526012	hypothetical protein
	JEONG1266_11625	3	21	2.605720	phage tail protein
	JEONG1266_11630	4	28	5.783046	phage tail protein
	JEONG1266_11635	4	28	6.119494	enterobacterial Ail/Lom family protein
	JEONG1266_11640	4	30	5.713543	phage tail protein
	JEONG1266_11645	3	28	6.052125	phage tail protein
	JEONG1266_11650	4	30	6.744957	phage minor tail protein L
	JEONG1266_11660	3	27	5.162414	phage tail protein
	JEONG1266_11665	3	27	4.622136	phage tail tape measure protein
	JEONG1266_11670	2	27	4.097786	phage tail assembly protein T
	JEONG1266_11675	2	27	2.430863	phage minor tail protein G
	JEONG1266_11680	3	28	2.513634	phage tail protein
	JEONG1266_11685	3	23	3.660600	phage tail protein
	JEONG1266_11690	3	23	4.140113	phage tail protein
	JEONG1266_11695	3	23	6.104332	phage tail protein
	JEONG1266_11700	3	25	6.942758	DNA-packaging protein FI
	JEONG1266_11705	4	26	6.860451	major capsid protein E
	JEONG1266_11710	1	23	5.694951	head decoration protein
	JEONG1266_11715	1	22	5.250887	capsid assembly protein
	JEONG1266_11720	1	21	4.363768	phage portal protein
	JEONG1266_11725	0	21	2.593770	phage tail protein
	JEONG1266_11730	1	19	0.768203	terminase
	JEONG1266_11735	1	19	0.475264	protein convertase
	JEONG1266_11740	1	25	-2.778587	hypothetical protein
	JEONG1266_11745	1	23	-1.678569	transcriptional regulator
	JEONG1266_11750	0	22	-0.956168	endopeptidase
	JEONG1266_11755	1	23	-0.427142	hypothetical protein
	JEONG1266_11760	3	25	0.241073	antirepressor
	JEONG1266_11765	2	27	0.902710	lysozyme
	JEONG1266_11770	4	31	1.906788	hypothetical protein
	JEONG1266_11775	3	31	0.339017	holin
	JEONG1266_11780	3	31	0.636264	**DNA adenine methylase
	JEONG1266_11785	1	23	1.133372	TrmB family transcriptional regulator
	JEONG1266_11800	1	21	0.664047	hypothetical protein
	JEONG1266_11805	0	23	-0.831527	endodeoxyribonuclease
	JEONG1266_11810	-1	24	-0.816788	hypothetical protein
	JEONG1266_11815	-1	22	-1.763688	hypothetical protein
	JEONG1266_11820	0	23	-1.732838	hypothetical protein
	JEONG1266_11825	0	26	-3.284196	hypothetical protein
	JEONG1266_11830	-1	26	-2.597707	accessory colonization factor AcfC
	JEONG1266_11835	1	25	-1.652832	nuclease PIN
	JEONG1266_11840	0	23	-1.994591	replication protein
	JEONG1266_11845	1	25	-0.536091	DNA-binding protein
	JEONG1266_11850	1	26	-1.184099	hypothetical protein
	JEONG1266_11855	2	28	-1.828511	transcriptional regulator
	JEONG1266_11860	2	28	-3.015627	transcriptional regulator
	JEONG1266_11865	2	31	-5.613468	hypothetical protein
	JEONG1266_11870	4	34	-7.450177	hypothetical protein
	JEONG1266_11875	3	35	-9.202814	hypothetical protein
	JEONG1266_11880	1	38	-9.889392	hypothetical protein
	JEONG1266_11885	1	24	-4.916202	cell division inhibition protein DicB
	JEONG1266_11890	1	25	-4.835599	hypothetical protein
	JEONG1266_11895	1	22	-4.288352	exonuclease
	JEONG1266_11900	1	21	-3.473551	excisionase
	JEONG1266_11905	0	18	-2.896399	integrase
	JEONG1266_11910	0	16	-2.900256	outer membrane protein OmpW
	JEONG1266_11915	-1	16	-3.522553	hypothetical protein
	JEONG1266_11920	0	15	-2.446231	septation protein A
	JEONG1266_11925	1	15	-1.538608	acyl-CoA thioesterase
	JEONG1266_11930	-2	19	-3.900972	energy transducer TonB
	JEONG1266_11935	-2	22	-4.198883	hypothetical protein
	JEONG1266_11945	-1	20	-2.777371	voltage-gated potassium channel
	JEONG1266_11950	-2	18	-3.056448	hypothetical protein
	JEONG1266_11955	-1	15	-2.467735	cardiolipin synthase
	JEONG1266_11960	-1	11	-0.144736	dsDNA-mimic protein
	JEONG1266_11965	-1	12	-0.796683	oligopeptide ABC transporter ATP-binding protein
	JEONG1266_11970	-1	12	-1.773160	oligopeptide ABC transporter ATP-binding protein
	JEONG1266_11975	-1	13	-1.809161	peptide ABC transporter permease
	JEONG1266_11980	-2	23	-1.664659	oligopeptide transporter permease
	JEONG1266_11985	-1	24	-2.523093	oligopeptide ABC transporter substrate-binding
	JEONG1266_11990	-2	27	-3.079575	hypothetical protein
	JEONG1266_11995	-2	28	-3.024285	bifunctional acetaldehyde-CoA/alcohol
	JEONG1266_12000	-3	25	-2.869389	thymidine kinase
	JEONG1266_12005	-3	25	-2.586812	transcriptional regulator
	JEONG1266_12010	-1	25	-4.069929	UTP--glucose-1-phosphate uridylyltransferase
	JEONG1266_12015	-2	20	-3.316812	response regulator of RpoS
	2217#JEONG1266_11635	CHANLCOLICIN#Channel forming colicin signature.	32	0.007
		>CHANLCOLICIN#Channel forming colicin signature.
		          Length = 522
		
		 Score = 31.6 bits (71), Expect = 0.007
		 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 34/170 (20%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEENAANADTSAGDASESAR 160
		           EA  +    + E A+  E A+K    A+     + +     E    N+  S+   S  AR
		Sbjct: 175 EAEEKRLAALSEEAKAVEIAQKKLSAAQ-----SEVVKMDGEIKTLNSRLSS---SIHAR 226
		
		Query: 161 QAAESAAAAKQSEEASSSSA--------SAAAQKASESLQS----------------ATD 196
		            A     A K++E A +S+            + +A++ LQ+                  +
		Sbjct: 227 DAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREE 286
		
		Query: 197 AELSKKTAESAAGNAARDATTAAEKARESAESAQSAEQSRIA-AEEAVNR 245
		            +     +E+   N      T  +KA     + ++A  +R+  AEE + +
		Sbjct: 287 KQKQVTASETRI-NRINADITQIQKAISQVSNNRNAGIARVHEAEENLKK 335
		
		
		
		 Score = 30.8 bits (69), Expect = 0.012
		 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
		
		Query: 101 EALRRFELMVEEAARHAEEAKKNAGEAETSARNAGISASQAEENAANADTSAGDASESAR 160
		           E  R+     E+A + AE+ +K     E +     +  ++AEE    A +    A E   
		Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIER-EKAETERQLKLAEAEEKRLAALSEEAKAVE--- 192
		
		Query: 161 QAAESAAAAKQSEEASSSSASAAAQKASESLQSATDAE---LSKKTAESAAGNAARDATT 217
		             A+   +A QSE                S   A DAE   L+ K  E A  +A      
		Sbjct: 193 -IAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELD 251
		
		Query: 218 AAEKARESAESAQSAEQSRIAAEEAVNRI 246
		              K    +  A    Q+R   E    R+
		Sbjct: 252 ELVKK--LSPRANDPLQNRPFFEATRRRV 278
		
		
	2218#JEONG1266_11640	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	135	9e-43
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  135 bits (341), Expect = 9e-43
		 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
		
		Query: 7   VILSAVVWQVAAATPASAAEHQSTLSARYLHASTNVPG-SDDLNGINVKYRYEFMDA-LG 64
		           +   + +  V A T  ++    ST++  Y  A ++  G  + + G N+KYRYE  ++ LG
		Sbjct: 4   IACLSALAAVLAFTAGTSVAATSTVTGGY--AQSDAQGQMNKMGGFNLKYRYEEDNSPLG 61
		
		Query: 65  LITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRV 124
		           +I SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV Y + 
		Sbjct: 62  VIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKF 113
		
		Query: 125 STFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAYEGSGSG 184
		            T        T+     HD          S+   ++GAG+QFNP E+V +D +YE S   
		Sbjct: 114 QT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYEQSRIR 156
		
		Query: 185 DWRSDAFIVGIGYRF 199
		                 +I G+GYRF
		Sbjct: 157 SVDVGTWIAGVGYRF 171
		
		
	2223#JEONG1266_11670	LCRVANTIGEN#Low calcium response V antigen signature.	33	0.004
		>LCRVANTIGEN#Low calcium response V antigen signature.
		          Length = 326
		
		 Score = 33.1 bits (75), Expect = 0.004
		 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
		
		Query: 529 DLWKAENQYAVL-KEAATKRQLSEQEKSLLAHKDETLEYKRQLAELG---DKVEYQKRLN 584
		           +++KA  +Y +L K   T  Q+   EK +++ KD      ++   LG   +   Y K  N
		Sbjct: 205 EIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDFLGSENKRTGALGNLKNSYSYNKDNN 264
		
		Query: 585 ELAQQAVRFEEQQSAKQAAISAKARGLTDRQAQRESEAQRL 625
		           EL+  A    ++       +S K   L+D  ++  S  + L
		Sbjct: 265 ELSHFATTCSDKSRPLNDLVSQKTTQLSDITSRFNSAIEAL 305
		
		
	2226#JEONG1266_11685	INTIMIN#Intimin signature.	31	0.006
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 30.8 bits (69), Expect = 0.006
		 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
		
		Query: 134 KEVITRTVKVTNVGKPSVAEERSEITPATAIKVTP-------------TSGTVAKGKTTT 180
		           ++ IT TVKV    KP   +E +  T    +  +              TS T  K   + 
		Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSA 734
		
		Query: 181 LT--VSFEPESATDKTFRAVSADPSKATI--SVKDMTITVNGVATGKVQIPVVSGNGQF 235
		               V+ + ++   + F  ++ D     I  +     +    +  G+V +    GNG++
		Sbjct: 735 RVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKY 793
		
		
	2253#JEONG1266_11835	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	59	3e-16
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 59.5 bits (144), Expect = 3e-16
		 Identities = 18/46 (39%), Positives = 31/46 (67%)
		
		Query: 23 QKAMLIALIVICLIVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEP 68
		          + +++  ++++CL +++   +TRK LCE+R R G  EVA F AYE 
		Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
		
		
	2255#JEONG1266_11845	FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein...	27	0.010
		>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein
		          signature.
		          Length = 173
		
		 Score = 27.3 bits (60), Expect = 0.010
		 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
		
		Query: 37 EHVRWDGRARFKGQVMAPACTLA-MEAAWREIDMGT 71
		          +HV       FKG+++ PACT+   E  W +I++  
		Sbjct: 20 QHVHAADNLTFKGKLIIPACTVQNAEVNWGDIEIQN 55
		
		
	2274#JEONG1266_11945	TONBPROTEIN#Gram-negative bacterial tonB protein signature.	256	1e-88
		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.
		          Length = 239
		
		 Score =  256 bits (655), Expect = 1e-88
		 Identities = 236/239 (98%), Positives = 236/239 (98%)
		
		Query: 1   MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQA 60
		           MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMV PADLEPPQA
		Sbjct: 1   MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTPADLEPPQA 60
		
		Query: 61  VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQQKRDVKPVESR 120
		           VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ KRDVKPVESR
		Sbjct: 61  VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
		
		Query: 121 PASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF 180
		           PASPFENTAPAR TSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF
		Sbjct: 121 PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKF 180
		
		Query: 181 DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ 239
		           DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ
		Sbjct: 181 DVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ 239
		
		
	2275#JEONG1266_11950	adhesinmafb#Neisseria meningitidis: adhesin MafB signature.	31	4e-04
		>adhesinmafb#Neisseria meningitidis: adhesin MafB signature.
		          Length = 467
		
		 Score = 31.2 bits (70), Expect = 4e-04
		 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
		
		Query: 41  GPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKV 97
		            P+PA         G  GS    E  + EA   W   +P  A  V    +V    KV
		Sbjct: 268 APLPA--EGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
		
		
	2280#JEONG1266_11975	HTHFIS#FIS bacterial regulatory protein HTH signature.	31	0.008
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 30.6 bits (69), Expect = 0.008
		 Identities = 9/16 (56%), Positives = 11/16 (68%)
		
		Query: 55  VVGESGCGKSTFARAI 70
		           + GESG GK   ARA+
		Sbjct: 165 ITGESGTGKELVARAL 180
		
		
	2290#JEONG1266_12025	HTHFIS#FIS bacterial regulatory protein HTH signature.	90	7e-22
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 89.5 bits (222), Expect = 7e-22
		 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
		
		Query: 10  ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69
		           IL+ +D+   R++L+   S  G    + ++       +     DL++ D+ MP  N   L
		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65
		
		Query: 70  LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129
		           L  I+      PVLV+SA        KA   G  D L KP  DL  L  ++   L  +  
		Sbjct: 66  LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRAL--AEP 122
		
		Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ 161
		             R  + E   +D   +V   AA  ++ + L 
		Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
		
		
JEONG1266_12265	JEONG1266_12615	Y	Y	Y	JEONG1266_12190	JEONG1266_12385
	JEONG1266_12265	-3	18	-3.770547	DNA polymerase V subunit UmuD
	JEONG1266_12270	-3	18	-5.061048	hemolysin E
	JEONG1266_12275	-1	17	-5.801525	hypothetical protein
	JEONG1266_12280	-3	18	-4.697235	isomerase/hydrolase
	JEONG1266_12285	-1	22	-3.762439	hypothetical protein
	JEONG1266_12290	-1	21	-4.307436	hypothetical protein
	JEONG1266_12295	-1	21	-4.221342	inhibitor of g-type lysozyme
	JEONG1266_12300	-2	18	-3.460902	hypothetical protein
	JEONG1266_12305	-1	15	-1.496881	septum site-determining protein MinC
	JEONG1266_12310	-2	15	-0.360213	septum site-determining protein MinD
	JEONG1266_12315	0	16	-1.426004	cell division topological specificity factor
	JEONG1266_12320	2	21	-3.053424	hypothetical protein
	JEONG1266_12325	3	27	-4.658746	transposase
	JEONG1266_28190	2	22	-2.112072	transposase
	JEONG1266_28195	2	22	-2.287283	transcriptional regulator
	JEONG1266_12340	3	24	-2.398845	protease
	JEONG1266_12345	3	22	-1.875250	hydrolase
	JEONG1266_12350	2	23	-1.822778	transposase
	JEONG1266_12355	1	21	1.377492	isocitrate lyase
	JEONG1266_12360	3	29	-5.455257	transposase
	JEONG1266_12365	5	35	-8.506426	tail assembly chaperone
	JEONG1266_12370	5	42	-9.723098	methyltransferase
	JEONG1266_12375	5	42	-9.277322	stress-induced bacterial acidophilic repeat
	JEONG1266_12380	3	37	-6.774370	hypothetical protein
	JEONG1266_12385	5	32	-3.622218	hypothetical protein
	JEONG1266_12390	5	30	-1.484417	Mn-containing catalase
	JEONG1266_12395	4	29	-0.005878	phage tail protein
	JEONG1266_12400	3	22	3.084302	hypothetical protein
	JEONG1266_12405	2	21	4.691056	hypothetical protein
	JEONG1266_12410	2	23	5.390263	enterobacterial Ail/Lom family protein
	JEONG1266_12415	4	26	5.244468	host specificity protein J
	JEONG1266_12420	4	25	4.947526	phage tail protein
	JEONG1266_12425	3	26	5.198195	phage tail protein
	JEONG1266_12430	2	26	5.812111	phage minor tail protein L
	JEONG1266_12435	2	26	6.476742	phage tail protein
	JEONG1266_12440	2	27	6.052125	phage tail tape measure protein
	JEONG1266_12445	1	27	5.930983	phage tail assembly protein T
	JEONG1266_12450	2	27	5.912264	phage minor tail protein G
	JEONG1266_12455	1	26	5.638740	phage tail protein
	JEONG1266_12460	2	25	4.658061	phage tail protein
	JEONG1266_12465	3	26	4.737029	phage tail protein
	JEONG1266_12470	3	24	5.012870	phage tail protein
	JEONG1266_12475	2	26	4.906309	DNA-packaging protein FI
	JEONG1266_12480	2	26	6.525750	major capsid protein E
	JEONG1266_12485	4	25	7.001894	head decoration protein
	JEONG1266_12490	4	26	6.901052	capsid assembly protein
	JEONG1266_12495	1	23	5.741724	phage portal protein
	JEONG1266_12500	1	23	5.469963	phage tail protein
	JEONG1266_12510	1	21	2.864580	terminase
	JEONG1266_12515	1	20	-1.638181	protein convertase
	JEONG1266_12520	0	19	-2.431708	hypothetical protein
	JEONG1266_12525	2	28	-6.700938	hypothetical protein
	JEONG1266_12530	2	31	-7.584239	hypothetical protein
	JEONG1266_12535	2	29	-6.802563	lipoprotein bor
	JEONG1266_12540	2	26	-5.709153	endopeptidase
	JEONG1266_12545	3	26	-3.244876	lysozyme
	JEONG1266_12550	3	25	-1.870430	holin
	JEONG1266_12555	1	24	-1.830651	antitermination protein
	JEONG1266_12560	1	27	-2.030219	hypothetical protein
	JEONG1266_12565	2	25	-1.665678	endodeoxyribonuclease
	JEONG1266_12570	3	29	-8.501562	hypothetical protein
	JEONG1266_12575	3	30	-8.839540	hypothetical protein
	JEONG1266_12580	3	35	-9.404686	hypothetical protein
	JEONG1266_12585	1	32	-8.031661	multidrug transporter
	JEONG1266_12590	1	28	-7.733097	protein ren
	JEONG1266_12595	1	31	-8.318765	Replication protein P
	JEONG1266_12600	0	29	-4.974811	Replication protein O
	JEONG1266_12605	0	22	-3.576288	excisionase
	JEONG1266_12610	-1	22	-3.292721	integrase
	JEONG1266_12615	-1	21	-3.798834	NADP-dependent isocitrate dehydrogenase
	2344#JEONG1266_12325	PRTACTNFAMLY#Pertactin virulence factor family signature.	126	3e-35
		>PRTACTNFAMLY#Pertactin virulence factor family signature.
		          Length = 910
		
		 Score =  126 bits (317), Expect = 3e-35
		 Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 2/235 (0%)
		
		Query: 1   MGIDSRNDIPEGIATLGAFMGYSHSHIGFDRGGHGSVDSYSLGGYASWEHESGFYLDGVV 60
		           +G D    +  G   LG   GY+    GF   G G  DS  +GGYA++  +SGFYLD  +
		Sbjct: 677 LGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATL 736
		
		Query: 61  KLNRFESNVAGKMSSGGAANGSYHSNGLGGHIETGMRFT-DGNWNLTPYASLTGFTADNP 119
		           + +R E++     S G A  G Y ++G+G  +E G RFT    W L P A L  F A   
		Sbjct: 737 RASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGG 796
		
		Query: 120 EYHLSNGMESKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNS 179
		            Y  +NG+  +     S+   LG  +   + L  G +V+P++KA+V +EF     V  N 
		Sbjct: 797 AYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNG 856
		
		Query: 180 DGNFVNDLSGRRGIYQAGIKASFSSTLSGHLGVGYSNGAGMESPWNAVAGVNWSF 234
		             +   +L G R     G+ A+     S +    YS G  +  PW   AG  +S+
		Sbjct: 857 IAH-RTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
		
		
	2347#JEONG1266_12340	HTHTETR#TetR bacterial regulatory protein HTH signature.	28	0.022
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 28.1 bits (62), Expect = 0.022
		 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
		
		Query: 3  KRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMI 43
		          +  +  I+D   A  L   +   + ++ E+A+ +GV++  I
		Sbjct: 10 QETRQHILDV--ALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
		
		
	2348#JEONG1266_12345	OMPTIN#Omptin serine protease signature.	527	0.0
		>OMPTIN#Omptin serine protease signature.
		          Length = 317
		
		 Score =  527 bits (1358), Expect = 0.0
		 Identities = 313/317 (98%), Positives = 316/317 (99%)
		
		Query: 1   MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS 60
		           MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS
		Sbjct: 1   MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVS 60
		
		Query: 61  QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR 120
		           QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR
		Sbjct: 61  QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESR 120
		
		Query: 121 HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI 180
		           HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI
		Sbjct: 121 HPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI 180
		
		Query: 181 GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVEASDNDEHYDPGKRIT 240
		           GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVE+SDNDEHYDPGKRIT
		Sbjct: 181 GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKRIT 240
		
		Query: 241 YRSKVKDQNYYSVSVNAGYYVTPNAKVYVEGTWNRVTNKKGNTSLYDHNDNTSDYSKNGA 300
		           YRSKVKDQNYYSV+VNAGYYVTPNAKVYVEG WNRVTNKKGNTSLYDHN+NTSDYSKNGA
		Sbjct: 241 YRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGA 300
		
		Query: 301 GIENYNFITTAGLKYTF 317
		           GIENYNFITTAGLKYTF
		Sbjct: 301 GIENYNFITTAGLKYTF 317
		
		
	2354#JEONG1266_12375	LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein Lu...	31	0.002
		>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS
		           signature.
		          Length = 171
		
		 Score = 31.4 bits (71), Expect = 0.002
		 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
		
		Query: 37  TKEHLLPHFL-EHLGNNHLDI------GVGTGFYLTHVPESSLISLMDLNEASLNAASTR 89
		           T EHL   F+  HL  + ++I      G  TGFY++ +   S   + D   A++      
		Sbjct: 54  TLEHLYAGFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKV 113
		
		Query: 90  AGESKI 95
		             ++KI
		Sbjct: 114 ENQNKI 119
		
		
	2362#JEONG1266_12425	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	6e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (349), Expect = 6e-44
		 Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNVPGSDDLNGINVKYRYEFT 60
		           M+K+ A + + A  LA +   + A+   ST++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKI-ACLSALAAVLAFTAGTSVAA--TSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGLVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGM 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + G+
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	2364#JEONG1266_12435	PF06291#Lambda prophage Bor protein	27	0.018
		>PF06291#Lambda prophage Bor protein
		          Length = 102
		
		 Score = 27.3 bits (60), Expect = 0.018
		 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
		
		Query: 102 MTGILFSLGASMVLGGVAQML-----APKARTPRTQTTDN 136
		           M  +LFS   +M++ G AQ        P A TP+   T +
		Sbjct: 6   MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHH 45
		
		
	2368#JEONG1266_12455	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	33	0.007
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 32.7 bits (74), Expect = 0.007
		 Identities = 45/277 (16%), Positives = 84/277 (30%), Gaps = 21/277 (7%)
		
		Query: 238 LTAMARQFHNVTAEQIAYVAQLQRSGEEAGALQAANEAATKGFDDQTRRLKENMGTLETW 297
		            +A  +      A   A  A L+++ E A     A+ A  K  + +   L+     LE  
		Sbjct: 139 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 198
		
		Query: 298 ADRTARAFKSMWDAVLDIGRP-DTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARARY 356
		            +       +    +  +              E A + A +            +  +A  
		Sbjct: 199 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258
		
		Query: 357 WDDR---EKARLALEAARKKAEQQSQQDKNAQQQSDTEASRLKYTEEA-----QKAYERL 408
		              +   EKA             + +  +  +   + E + L++  +      Q     L
		Sbjct: 259 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318
		
		Query: 409 QTPLEKYTARQEELNKALKDGKI-------LQADYNTLMAAAKKDYEATLKKPKQ----S 457
		               E     + E  K  +  KI       L+ D +     AKK  EA  +K ++    S
		Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR-EAKKQLEAEHQKLEEQNKIS 377
		
		Query: 458 GVKVSAGDRQEDSAHAALLTLQAELRMLEKHAGANEK 494
		                +  R  D++  A   ++  L        A EK
		Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEK 414
		
		
	2371#JEONG1266_12470	INTIMIN#Intimin signature.	28	0.029
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 28.5 bits (63), Expect = 0.029
		 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 29/202 (14%)
		
		Query: 66  DWAATGQGQKSAGDTSFT----LAWMPGEQGQQALLAWFNEGDTRAYKIRFPNGTVDVFR 121
		                G G+ +    S      +      +   AL       +  A  I        +  
		Sbjct: 611 SANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSAL-------NANAV-IFVDQTKASITE 662
		
		Query: 122 GWVSSIGKAVTAKEVITRTVKVTNVGRPSMAEDRSTVTAATGMTVTPASTSVVKGQSTTL 181
		                       ++ IT TVKV    +P   ++ +  T    ++ +   T        TL
		Sbjct: 663 IKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTL 722
		
		Query: 182 T---------------VAFQPEGATDKSFRAVSADKTKATVSVSGMTITVKG--VAAGKV 224
		           T               VA   +    + F  ++ D     +  +G+   +    +  G+V
		Sbjct: 723 TSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQV 782
		
		Query: 225 NIPVVSGNGEFAAVAEINVTAS 246
		           N+    GNG++   +     AS
		Sbjct: 783 NLKASGGNGKYTWRSANPAIAS 804
		
		
	2386#JEONG1266_12545	PF06291#Lambda prophage Bor protein	170	4e-59
		>PF06291#Lambda prophage Bor protein
		          Length = 102
		
		 Score =  170 bits (432), Expect = 4e-59
		 Identities = 91/97 (93%), Positives = 93/97 (95%)
		
		Query: 1   MKKMLLATALALLITGCAQQTFTVQNKPAAVTPKETITHHFFVSGIGQKKTVDAAKICGG 60
		           MKKML + ALA+LITGCAQQTFTV NKP AVTPKETITHHFFVSGIGQKKTVDAAKICGG
		Sbjct: 6   MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHFFVSGIGQKKTVDAAKICGG 65
		
		Query: 61  AENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 97
		           AENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ
		Sbjct: 66  AENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSQ 102
		
		
	2398#JEONG1266_12610	FLGMOTORFLIG#Flagellar motor switch protein FliG signature.	28	0.040
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
		          Length = 344
		
		 Score = 27.8 bits (62), Expect = 0.040
		 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
		
		Query: 2   KNIAAQMVNFDREQM-----------RRIANNMPEQYDEKPQVQQVAQIINGVFSQLLAT 50
		            N+A ++   DR              +++A+   E Y     V  V +IIN    +    
		Sbjct: 165 TNVARRIALMDRTSPEVVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
		
		Query: 51  FPASLANRDQNELNEIR 67
		              SL   D     EI+
		Sbjct: 225 IIESLEEEDPELAEEIK 241
		
		
JEONG1266_12725	JEONG1266_13095	Y	Y	Y	JEONG1266_12640	JEONG1266_12850
	JEONG1266_12725	0	33	-4.038552	hypothetical protein
	JEONG1266_12730	0	30	-2.775159	hypothetical protein
	JEONG1266_12735	-2	20	-0.923249	hypothetical protein
	JEONG1266_12740	-2	14	-0.853718	hypothetical protein
	JEONG1266_12745	-2	14	-0.783118	DNA-binding protein
	JEONG1266_12750	-3	12	-0.400805	integrase
	JEONG1266_12755	-4	10	-0.471183	50S ribosomal protein L16 arginine hydroxylase
	JEONG1266_12760	-3	10	-3.075590	peptidase T
	JEONG1266_12765	-2	14	-4.770386	hypothetical protein
	JEONG1266_12770	0	20	-5.262636	putrescine/spermidine ABC transporter
	JEONG1266_12775	1	21	-4.866872	spermidine/putrescine ABC transporter permease
	JEONG1266_12780	2	27	-6.278487	type III secretion protein GogB
	JEONG1266_12785	2	31	-4.915389	secretion protein EspO
	JEONG1266_12790	6	45	-13.132694	transposase
	JEONG1266_12795	8	50	-14.103561	transposase
	JEONG1266_12805	8	50	-13.992564	transposase
	JEONG1266_12810	7	46	-12.357606	transposase
	JEONG1266_12815	6	44	-12.009671	DUF4765 domain-containing protein
	JEONG1266_12820	7	47	-13.772474	E3 ubiquitin--protein ligase
	JEONG1266_12825	5	38	-9.136802	phage tail protein
	JEONG1266_12830	0	23	0.009903	phage tail protein
	JEONG1266_12835	1	25	0.427425	antirepressor
	JEONG1266_12840	2	27	2.717640	DNA-binding protein
	JEONG1266_12845	4	32	4.802401	hypothetical protein
	JEONG1266_12850	4	32	5.173827	phage minor tail protein L
	JEONG1266_12855	5	34	5.581351	phage tail protein
	JEONG1266_12860	5	33	5.659625	phage tail tape measure protein
	JEONG1266_12865	4	32	5.695816	phage tail protein
	JEONG1266_12870	7	32	5.766792	phage tail protein
	JEONG1266_12875	8	31	5.306968	phage tail protein
	JEONG1266_12880	6	29	5.119575	hypothetical protein
	JEONG1266_12885	6	31	5.510225	hypothetical protein
	JEONG1266_12890	6	31	6.364737	head-tail adaptor protein
	JEONG1266_12895	6	31	6.345547	DNA-packaging protein
	JEONG1266_12900	4	31	6.106305	phage portal protein
	JEONG1266_12910	5	30	6.748426	hypothetical protein
	JEONG1266_12915	4	29	6.274721	phage capsid protein
	JEONG1266_12920	4	29	3.977510	terminase
	JEONG1266_12925	1	34	1.435304	terminase
	JEONG1266_12930	2	32	-0.726366	DNase
	JEONG1266_12935	1	27	-0.091579	HNH nuclease
	JEONG1266_12940	0	25	-1.804927	hypothetical protein
	JEONG1266_12945	0	23	-2.298827	hypothetical protein
	JEONG1266_12950	0	21	-0.364015	hypothetical protein
	JEONG1266_12955	1	23	-1.327041	hypothetical protein
	JEONG1266_12960	2	22	-0.471001	endopeptidase
	JEONG1266_12965	4	26	-0.851203	hypothetical protein
	JEONG1266_12970	2	25	-1.051489	antirepressor
	JEONG1266_12975	5	29	1.002683	lysozyme
	JEONG1266_12980	4	31	0.711661	hypothetical protein
	JEONG1266_12985	3	25	1.778978	holin
	JEONG1266_12990	1	24	1.660586	hypothetical protein
	JEONG1266_12995	1	25	1.449169	hypothetical protein
	JEONG1266_13000	0	25	1.125652	hypothetical protein
	JEONG1266_13005	-1	26	-0.038082	hypothetical protein
	JEONG1266_13010	0	25	-0.490187	hypothetical protein
	JEONG1266_13015	3	32	-3.052923	hypothetical protein
	JEONG1266_13020	3	31	-3.579753	hypothetical protein
	JEONG1266_13025	2	30	-3.267008	hypothetical protein
	JEONG1266_13030	3	28	-2.719805	hypothetical protein
	JEONG1266_13035	2	22	-0.858629	DUF4752 domain-containing protein
	JEONG1266_13040	2	25	0.295689	hypothetical protein
	JEONG1266_13045	2	26	1.963992	DNA-binding protein
	JEONG1266_13050	3	25	2.499356	hypothetical protein
	JEONG1266_13055	4	25	1.433853	replication protein
	JEONG1266_13060	3	24	-0.011151	phage replisome organizer
	JEONG1266_13065	2	24	-0.478755	Rha family transcriptional regulator
	JEONG1266_13070	2	24	-2.851654	transcriptional regulator
	JEONG1266_13075	2	25	-5.555543	repressor
	JEONG1266_13080	2	30	-6.770975	hypothetical protein
	JEONG1266_13085	2	31	-6.357981	hypothetical protein
	JEONG1266_13090	-2	24	-4.728761	hypothetical protein
	JEONG1266_13095	-2	19	-3.796360	excisionase
	2431#JEONG1266_12775	PF05272#Virulence-associated E family protein	30	0.017
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.0 bits (67), Expect = 0.017
		 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
		
		Query: 46  LTLLGPSGCGKTTVLRLIAGLE-TVDSGRIMLDNED 80
		           + L G  G GK+T++  + GL+   D+   +   +D
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
		
		
	2477#JEONG1266_13020	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	65	2e-18
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 64.8 bits (158), Expect = 2e-18
		 Identities = 18/46 (39%), Positives = 32/46 (69%)
		
		Query: 23 QKAMLIALIVICITVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEP 68
		          + +++  ++++C+T+++   +TRK LCE+R R G  EVA F AYE 
		Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
		
		
	2478#JEONG1266_13025	FLGMRINGFLIF#Flagellar M-ring protein signature.	32	0.001
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 32.2 bits (73), Expect = 0.001
		 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
		
		Query: 22  GSNVVLPAEEAEELARIALASLAAVSDERAAYELFMEKRFG-----ESVDRRRAKNGD 74
		              + +PA++  E  R+ LA           +EL  +++FG     E V+ +RA  G+
		Sbjct: 82  SGAIEVPADKVHE-LRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGE 138
		
		
	2492#JEONG1266_13095	HTHFIS#FIS bacterial regulatory protein HTH signature.	27	0.028
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 27.5 bits (61), Expect = 0.028
		 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
		
		Query: 3   AELTAAMTAIRETA--QIAKLMNEAKTQAEVNAAIGELNSKLASIQRECVSLVELVGTYQ 60
		                A+ A  + A   + K  +  +    +  A+ E   + + ++ +    + LVG   
		Sbjct: 85  NTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSA 144
		
		Query: 61  EINASLKAKIAEFENFEAQTEGYILSQLESGTFVYSKEV 99
		            +   +   +A       QT+  ++   ESGT    KE+
		Sbjct: 145 AMQE-IYRVLARL----MQTDLTLMITGESGT---GKEL 175
		
		
	2493#JEONG1266_13100	BINARYTOXINB#Binary toxin B family signature.	26	0.043
		>BINARYTOXINB#Binary toxin B family signature.
		          Length = 764
		
		 Score = 25.8 bits (56), Expect = 0.043
		 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
		
		Query: 1   MTDEIPLDDALLQLREF--IDENSGEFFVQVWGNGA-NFDNTILRRSYERQG 49
		             + I  D+  LQL E      NS +      G    + DN  +  S E +G
		Sbjct: 171 KKEVISSDN--LQLPELKQKSSNSRKKRSTSAGPTVPDRDNDGIPDSLEVEG 220
		
		
JEONG1266_13280	JEONG1266_13365	Y	Y	N	JEONG1266_13205	JEONG1266_13410
	JEONG1266_13280	4	19	1.764467	septum formation inhibitor Maf
	JEONG1266_13285	3	16	1.402225	23S rRNA pseudouridine(955/2504/2580) synthase
	JEONG1266_13290	1	14	1.404472	hypothetical protein
	JEONG1266_13295	1	14	1.854661	ribonuclease E
	JEONG1266_13300	0	13	2.141192	flagellar hook-associated protein 3
	JEONG1266_13305	0	13	2.436240	flagellar hook-associated protein FlgK
	JEONG1266_13315	-1	13	2.613483	flagellar rod assembly protein/muramidase FlgJ
	JEONG1266_13325	2	14	2.733717	flagellar biosynthesis protein FlgA
	JEONG1266_13330	3	16	2.623782	flagellar basal body L-ring protein
	JEONG1266_13335	1	17	2.710474	flagellar basal-body rod protein FlgG
	JEONG1266_13340	0	16	2.437720	flagellar biosynthesis protein FlgF
	JEONG1266_13345	1	16	1.140859	flagellar hook protein FlgE
	JEONG1266_13350	1	19	0.847430	flagellar basal body rod modification protein
	JEONG1266_13355	0	13	0.796024	flagellar basal body rod protein FlgC
	JEONG1266_13360	2	16	1.254145	flagellar basal-body rod protein FlgB
	JEONG1266_13365	2	16	1.122047	flagella basal body P-ring formation protein
	2534#JEONG1266_13305	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	64	3e-12
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 64.3 bits (156), Expect = 3e-12
		 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 36/288 (12%)
		
		Query: 513  PSEEEFAERKRPEQPALATFAMPDVPPAPT-PAEPAAPVVAPAPKAAPATPATPAQPGLL 571
		            P  E+  +               DVP  P+   E A    AP P  APATP+        
		Sbjct: 983  PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT----- 1037
		
		Query: 572  SRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSER-- 629
		                           ET            +   Q       QN    +  + + ++    
		Sbjct: 1038 ---------------ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082
		
		Query: 630  TEGSDNREENRRNRRQAQQQTAETREGRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQ 689
		             E + +  E +  +    ++TA   +  +    TEK +   +  +    +  +    + Q
		Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142
		
		Query: 690  AQ---QEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV--AEETVVAPV 744
		            A+   +    +N++E   Q     +  +P   +     + Q V    +V      V  P 
		Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPA--KETSSNVEQPVTESTTVNTGNSVVENPE 1200
		
		Query: 745  AEETVAAEPIVQEAPA------PRTELVKVPLPVVAQTAPEQQEENNA 786
		                   +P V    +       R  +  VP  V   T         A
		Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248
		
		
		
		 Score = 63.5 bits (154), Expect = 4e-12
		 Identities = 46/261 (17%), Positives = 81/261 (31%), Gaps = 26/261 (9%)
		
		Query: 551  VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGGEETKPTEQP-APKAEAKPERQQDRR 609
		                             P + S             E  +  E P  P A A P       
		Sbjct: 991  TVDTTNITTPNNIQADVPSVPSN----------NEEIARVDEAPVPPPAPATPSETT--- 1037
		
		Query: 610  KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETREGRQQAEV------T 663
		                      N ++++++      D  E   +NR  A++  +  +   Q  EV      T
		Sbjct: 1038 -----ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092
		
		Query: 664  EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR 723
		            ++ +T + ++    E+  +   +  + Q+  K +  +    QE  +  + +    R    
		Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPK-VTSQVSPKQEQSETVQPQAEPARENDP 1151
		
		Query: 724  QLNQKVRYEQSVAEETVVAPVAEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE 783
		             +N K    Q+        P  E +   E  V E+    T    V  P     A  Q   
		Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211
		
		Query: 784  NNADNRDNGGMPRRSRRSPRH 804
		            N+  +       RRS RS  H
		Sbjct: 1212 NSESSNKPKNRHRRSVRSVPH 1232
		
		
	2535#JEONG1266_13310	FLAGELLIN#Flagellin signature.	46	1e-07
		>FLAGELLIN#Flagellin signature.
		          Length = 507
		
		 Score = 45.8 bits (108), Expect = 1e-07
		 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%)
		
		Query: 7   MMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLAR 66
		           ++ Q N+    +S +  +   E++S+G R+ +  DD    + A   +      +Q +   
		Sbjct: 11  LLTQNNLNKSQSSLSSAI---ERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNA 67
		
		Query: 67  TFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLAN 126
		                     E  L+++   +Q  +E  V A+NGT SD+D  S+  +IQ   +++  ++N
		Sbjct: 68  NDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 127
		
		Query: 127 TTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESIKQQVDASRSMVIGHTGDKIFDSITSN 186
		            T  NG  + +            +G      E+I   +       +G  G  +     + 
		Sbjct: 128 QTQFNGVKVLSQDNQMKIQVGANDG------ETITIDLQKIDVKSLGLDGFNVNGPKEAT 181
		
		Query: 187 AVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKT 232
		                    + T        A        + +     TA    DK 
		Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV 227
		
		
	2536#JEONG1266_13315	FLGHOOKAP1#Flagellar hook-associated protein signature.	677	0.0
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score =  677 bits (1747), Expect = 0.0
		 Identities = 541/546 (99%), Positives = 543/546 (99%)
		
		Query: 2   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 61
		           SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS
		Sbjct: 1   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60
		
		Query: 62  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 121
		           GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV
		Sbjct: 61  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120
		
		Query: 122 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 181
		           SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND
		Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180
		
		Query: 182 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 241
		           QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA
		Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240
		
		Query: 242 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 301
		           RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL
		Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300
		
		Query: 302 ALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVLATD 361
		           ALAFAEAFN+QHKAGFDANGD GEDFFAIGKPAVLQNTKN G+VAIGATVTDASAVLATD
		Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATD 360
		
		Query: 362 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 421
		           YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV
		Sbjct: 361 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 420
		
		Query: 422 NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 481
		           NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN
		Sbjct: 421 NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 480
		
		Query: 482 KTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 541
		           KTATLKTSS TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD
		Sbjct: 481 KTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 540
		
		Query: 542 ALINIR 547
		           ALINIR
		Sbjct: 541 ALINIR 546
		
		
	2537#JEONG1266_13320	FLGFLGJ#Flagellar protein FlgJ signature.	508	0.0
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score =  508 bits (1308), Expect = 0.0
		 Identities = 311/313 (99%), Positives = 311/313 (99%)
		
		Query: 1   MISDSKLLASAAWDAQSLNELKAKASEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60
		           MISDSKLLASAAWDAQSLNELKAKA EDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG
		Sbjct: 1   MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60
		
		Query: 61  LFSSEHTRLYTSMYDQQIAQQMTTGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120
		           LFSSEHTRLYTSMYDQQIAQQMT GKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET
		Sbjct: 61  LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120
		
		Query: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180
		           VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL
		Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180
		
		Query: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240
		           ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL
		Sbjct: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240
		
		Query: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300
		           EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK
		Sbjct: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300
		
		Query: 301 VSKTYSMNIDNLF 313
		           VSKTYSMNIDNLF
		Sbjct: 301 VSKTYSMNIDNLF 313
		
		
	2538#JEONG1266_13325	FLGPRINGFLGI#Flagellar P-ring protein signature.	427	e-152
		>FLGPRINGFLGI#Flagellar P-ring protein signature.
		          Length = 373
		
		 Score =  427 bits (1098), Expect = e-152
		 Identities = 156/363 (42%), Positives = 213/363 (58%), Gaps = 9/363 (2%)
		
		Query: 4   FLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQTLN 63
		           F +   L      A   RI+D+ S+Q  R N LIGYGLVVGL GTGD    +PFT Q++ 
		Sbjct: 13  FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72
		
		Query: 64  NMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGTLLM 123
		            ML  LGIT   G +   KN+AAVMVTA+LPPF   G  +DV VSS+G+A SLRGG L+M
		Sbjct: 73  AMLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131
		
		Query: 124 TPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFGVGN 183
		           T L G D Q+YA+AQG ++V G  A    +++        R+ NGA+IERELPS+F    
		Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSV 191
		
		Query: 184 TLNLQLNDEDFSMAQQIADTINRVR----GYGSATALDARTIQVRVPSGNSSQVRFLADI 239
		            L LQL + DFS A ++AD +N       G   A   D++ I V+ P   +   R +A+I
		Sbjct: 192 NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEI 250
		
		Query: 240 QNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAIAQGNLSVTVNRQANVSQPDTPFGG 299
		           +N+ V  T   AKVVIN RTG++V+  +V +   A++ G L+V V     V QP  PF  
		Sbjct: 251 ENLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSR 308
		
		Query: 300 GQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLR 359
		           GQT V PQT I   Q G  + ++     L  +V  LN++G     +++ILQ ++SAG L+
		Sbjct: 309 GQTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367
		
		Query: 360 AKL 362
		           A+L
		Sbjct: 368 AEL 370
		
		
	2539#JEONG1266_13330	FLGLRINGFLGH#Flagellar L-ring protein signature.	349	e-126
		>FLGLRINGFLGH#Flagellar L-ring protein signature.
		          Length = 232
		
		 Score =  349 bits (897), Expect = e-126
		 Identities = 232/232 (100%), Positives = 232/232 (100%)
		
		Query: 1   MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60
		           MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY
		Sbjct: 1   MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60
		
		Query: 61  GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120
		           GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA
		Sbjct: 61  GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120
		
		Query: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180
		           RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF
		Sbjct: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180
		
		Query: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
		           SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM
		Sbjct: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
		
		
	2540#JEONG1266_13335	FLGHOOKAP1#Flagellar hook-associated protein signature.	44	4e-07
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score = 43.8 bits (103), Expect = 4e-07
		 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
		
		Query: 3  SSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTL 62
		          S +  A +GL+A Q  ++  +NN+++ +  G+ RQ  +               +   +TL
		Sbjct: 2  SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47
		
		Query: 63 PSGLQIGTGVRPVATERLHSQ 83
		           +G  +G GV     +R +  
		Sbjct: 48 GAGGWVGNGVYVSGVQREYDA 68
		
		
		
		 Score = 41.1 bits (96), Expect = 3e-06
		 Identities = 11/41 (26%), Positives = 21/41 (51%)
		
		Query: 220 ETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260
		             S VN+ EE  N+ + Q+ Y  N++ + T + +   L  +
		Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
		
		
	2542#JEONG1266_13345	FLGHOOKAP1#Flagellar hook-associated protein signature.	41	4e-06
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score = 41.5 bits (97), Expect = 4e-06
		 Identities = 17/49 (34%), Positives = 29/49 (59%)
		
		Query: 353 TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 401
		            L+N     S V+L +E  N+   Q+ Y +NAQ ++T + I + L+N+R
		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
		
		
		
		 Score = 37.2 bits (86), Expect = 1e-04
		 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
		
		Query: 6  AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57
		          A+SGLNAA   L+   NNI++    G+   T   A     + AG  VG GV V+G+
		Sbjct: 7  AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62
		
		
JEONG1266_13485	JEONG1266_14120	Y	Y	Y	JEONG1266_13410	JEONG1266_13610
	JEONG1266_13485	-1	16	-3.049455	hypothetical protein
	JEONG1266_13490	0	21	-3.900914	glucan biosynthesis protein C
	JEONG1266_13495	0	21	-3.633638	hypothetical protein
	JEONG1266_13500	-1	25	-3.258559	RNase III inhibitor
	JEONG1266_13505	3	33	-5.808123	hypothetical protein
	JEONG1266_13510	1	34	-8.031181	curli assembly protein CsgC
	JEONG1266_13515	0	35	-8.225887	curlin
	JEONG1266_13520	0	32	-8.393132	curlin subunit CsgB
	JEONG1266_13525	0	26	-7.514262	hypothetical protein
	JEONG1266_13530	1	21	-5.591093	helix-turn-helix transcriptional regulator
	JEONG1266_13535	-1	18	-3.784789	curli assembly protein CsgE
	JEONG1266_13540	-2	16	-2.486855	curli assembly protein CsgF
	JEONG1266_13545	-1	16	-1.360111	curli production assembly/transport protein
	JEONG1266_13550	-1	14	-0.921497	hypothetical protein
	JEONG1266_13555	1	15	-0.819782	molecular chaperone
	JEONG1266_13560	1	14	-0.885674	phosphatase
	JEONG1266_13565	1	16	-1.188625	bifunctional glyoxylate/hydroxypyruvate
	JEONG1266_13570	3	21	0.045177	*restriction endonuclease subunit M
	JEONG1266_13580	7	26	0.439608	hypothetical protein
	JEONG1266_13585	7	26	2.283474	hypothetical protein
	JEONG1266_13590	7	30	3.739525	toxin
	JEONG1266_13595	8	30	4.210872	antitoxin
	JEONG1266_13600	8	30	4.392933	hypothetical protein
	JEONG1266_13605	7	27	3.316490	hypothetical protein
	JEONG1266_13610	6	24	3.198589	hypothetical protein
	JEONG1266_13615	6	23	3.139976	restriction endonuclease
	JEONG1266_13620	5	22	1.751401	hypothetical protein
	JEONG1266_13625	6	22	3.002965	hypothetical protein
	JEONG1266_13630	6	22	3.296599	phospholipase
	JEONG1266_13635	6	22	3.079310	chemotaxis protein
	JEONG1266_13640	6	21	2.883862	dGTPase
	JEONG1266_13645	6	20	2.794680	hypothetical protein
	JEONG1266_13650	8	21	3.653056	50S ribosome-binding GTPase
	JEONG1266_13655	4	21	-1.827354	hypothetical protein
	JEONG1266_13660	3	26	-4.269298	transposase
	JEONG1266_13665	6	23	-2.076556	transposase
	JEONG1266_13670	5	26	-1.628455	hypothetical protein
	JEONG1266_13675	5	28	-5.119523	transcriptional regulator
	JEONG1266_13680	4	30	-5.672025	transcriptional regulator
	JEONG1266_13685	4	29	-4.009162	phosphoadenosine phosphosulfate reductase
	JEONG1266_13690	4	29	-4.094869	helicase
	JEONG1266_13695	2	26	-3.740461	hypothetical protein
	JEONG1266_13700	3	27	-4.549514	hypothetical protein
	JEONG1266_13705	3	26	-0.774569	transposase
	JEONG1266_13710	3	25	1.072985	transposase
	JEONG1266_13715	3	21	0.872763	hypothetical protein
	JEONG1266_13720	4	23	-0.614542	hypothetical protein
	JEONG1266_13725	5	26	-4.605055	DNA-binding protein
	JEONG1266_13730	3	26	-4.059394	hypothetical protein
	JEONG1266_13735	2	22	-3.017618	hypothetical protein
	JEONG1266_13740	2	32	-6.169507	hypothetical protein
	JEONG1266_13745	3	31	-7.163546	transposase
	JEONG1266_13750	3	27	-5.586472	transposase
	JEONG1266_13755	2	26	-4.301411	glucosyl transferase
	JEONG1266_13760	2	28	-5.144980	regulator
	JEONG1266_13765	2	36	-7.322853	hypothetical protein
	JEONG1266_13770	4	25	-5.500906	hypothetical protein
	JEONG1266_13775	5	34	-7.574588	hypothetical protein
	JEONG1266_13780	5	40	-11.601758	hypothetical protein
	JEONG1266_13790	6	26	-4.618501	transposase
	JEONG1266_13795	7	26	-3.823198	hypothetical protein
	JEONG1266_13800	6	25	-3.940204	hypothetical protein
	JEONG1266_13805	6	24	-3.108033	adhesin
	JEONG1266_13810	5	21	-1.592333	hypothetical protein
	JEONG1266_13815	6	21	-0.346433	protein TerF
	JEONG1266_13820	3	23	-0.434856	hypothetical protein
	JEONG1266_13825	2	25	-0.829831	chemical-damaging agent resistance protein C
	JEONG1266_13830	1	23	0.693607	chemical-damaging agent resistance protein C
	JEONG1266_13835	1	26	0.730465	tellurium resistance protein TerC
	JEONG1266_13840	1	21	0.476367	Tellurium resistance protein TerB
	JEONG1266_13845	2	20	0.857319	tellurium resistance protein TerA
	JEONG1266_13850	3	20	1.125246	tellurium resistance protein TerZ
	JEONG1266_13855	2	23	1.616464	carbamoyl-phosphate synthase large chain
	JEONG1266_13860	2	24	1.452238	adenine/guanine phosphoribosyltransferase
	JEONG1266_13865	1	24	1.755056	hypothetical protein
	JEONG1266_13870	2	26	2.019255	hypothetical protein
	JEONG1266_13875	2	25	1.797247	citrate lyase subunit beta
	JEONG1266_13880	1	26	1.759541	hypothetical protein
	JEONG1266_13885	2	23	1.766473	tellurium resistance protein TerW
	JEONG1266_13890	2	22	1.930007	hypothetical protein
	JEONG1266_13895	4	24	1.920727	cytochrome O ubiquinol oxidase
	JEONG1266_13900	5	27	1.881111	transposase
	JEONG1266_13905	5	26	2.313383	transposase
	JEONG1266_13910	4	24	2.217356	transposase
	JEONG1266_13915	2	24	-2.031843	transposase
	JEONG1266_13920	4	34	-7.235134	transposase
	JEONG1266_13925	4	35	-8.253994	hypothetical protein
	JEONG1266_13930	4	31	-9.389570	hypothetical protein
	JEONG1266_13935	8	39	-14.375746	colicin immunity protein
	JEONG1266_13940	5	39	-13.851675	hypothetical protein
	JEONG1266_13945	3	33	-9.079189	50S ribosomal protein L31
	JEONG1266_13950	2	22	-2.815146	enterobacterial TraT complement resistance
	JEONG1266_13955	1	21	0.467108	transposase
	JEONG1266_13960	1	20	2.055359	serine protease eata
	JEONG1266_13965	0	20	2.668440	urease accessory protein UreG
	JEONG1266_13970	0	20	3.214553	urease accessory protein UreF
	JEONG1266_13975	1	21	3.371130	urease accessory protein UreE
	JEONG1266_13980	0	20	3.359976	urease subunit alpha
	JEONG1266_13985	1	19	1.966627	urease subunit beta
	JEONG1266_13990	2	19	1.170978	urease subunit gamma
	JEONG1266_14000	5	36	-10.189144	urease accessory protein UreD
	JEONG1266_14005	6	39	-10.987919	hypothetical protein
	JEONG1266_28200	10	50	-14.464012	hypothetical protein
	JEONG1266_14010	9	51	-14.690300	hydrolase
	JEONG1266_14015	8	45	-13.053113	diacylglycerol kinase
	JEONG1266_14020	5	35	-5.542681	hypothetical protein
	JEONG1266_14025	5	34	-4.375787	restriction endonuclease
	JEONG1266_14030	5	33	-3.719457	restriction endonuclease
	JEONG1266_14035	5	31	-1.294356	conjugal transfer protein TraT
	JEONG1266_14040	3	26	2.406498	transposase
	JEONG1266_28205	3	23	0.785656	DNA-binding protein
	JEONG1266_14050	3	21	0.188571	transposase
	JEONG1266_14055	3	19	0.374641	isocitrate lyase
	JEONG1266_14060	2	19	0.654634	transposase
	JEONG1266_14065	2	22	-1.559200	DEAD/DEAH box helicase
	JEONG1266_14070	3	27	-4.143183	hypothetical protein
	JEONG1266_14075	4	27	-4.991195	transposase
	JEONG1266_28210	4	27	-4.679112	transposase
	JEONG1266_28215	4	27	-5.486337	hypothetical protein
	JEONG1266_14090	4	38	-12.688236	hypothetical protein
	JEONG1266_14095	3	38	-11.011549	hypothetical protein
	JEONG1266_14100	1	35	-11.044567	transposase
	JEONG1266_14105	1	35	-11.031862	hypothetical protein
	JEONG1266_14110	-1	28	-8.697474	integrase
	JEONG1266_14115	-2	26	-8.098134	hypothetical protein
	JEONG1266_14120	-2	21	-3.864129	hypothetical protein
	2604#JEONG1266_13665	cdtoxina#Cytolethal distending toxin A signature.	28	0.013
		>cdtoxina#Cytolethal distending toxin A signature.
		          Length = 258
		
		 Score = 27.7 bits (61), Expect = 0.013
		 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
		
		Query: 74  VELLPVEITPDEQKEPVAAIAPSLSTSTQTSVSAGSCKVEFRHGNMTLENPSPELLTLLI 133
		           VE  P   +PDE   P+    P+L T+    +             ++L N    +LT+  
		Sbjct: 40  VEGGPTVPSPDEPGLPLPGPGPALPTNGAIPIPEPGTAPA-----VSLMNMDGSVLTMWS 94
		
		Query: 134 R 134
		           R
		Sbjct: 95  R 95
		
		
	2637#JEONG1266_13840	PF07824#Type III secretion chaperone	28	0.014
		>PF07824#Type III secretion chaperone
		          Length = 120
		
		 Score = 28.0 bits (62), Expect = 0.014
		 Identities = 10/36 (27%), Positives = 15/36 (41%)
		
		Query: 132 VNDDNQTEVARYDLTEDASTETAMLFGELYRHNGEW 167
		            +D+  + +AR DLT     E   +  E Y     W
		Sbjct: 73  TDDEGGSLIARLDLTGINEFEDIYVNTEYYISRVRW 108
		
		
	2640#JEONG1266_13855	TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.	30	0.028
		>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.
		          Length = 1147
		
		 Score = 29.7 bits (66), Expect = 0.028
		 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
		
		Query: 314 KTDGVVTIHVPDQPPIETRLTEGENRRTLCAIARLVNE--NGAIK-VERINQYF 364
		           K D  V  + PDQ PI  +  + +NR+    I++L  E  N AIK   + NQYF
		Sbjct: 31  KVDNAVASYDPDQKPIVDK-NDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYF 83
		
		
	2652#JEONG1266_13915	PF02370#M protein repeat	36	1e-04
		>PF02370#M protein repeat
		          Length = 168
		
		 Score = 35.9 bits (82), Expect = 1e-04
		 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
		
		Query: 18  EQAEALRQKDQQLSLVEETEAFLRSALARAEEKIEEEEREIEHLRAQIEKLRRMLFGTRS 77
		           + +++ R+ D Q   +      LR    + ++KIEE E+E +  + + E+  +     + 
		Sbjct: 38  DSSDSKRENDPQYRALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQD 97
		
		Query: 78  EKLQREVEQAEAQLKQREQESDRYSGREDDPQVPRQLRQSRHR 120
		           +  Q + ++ + + +Q E E  +      + Q+    RQ  +R
		Sbjct: 98  KHYQEQQKKHQQEQQQLEAEKQKL---AKEKQISDASRQGLNR 137
		
		
	2659#JEONG1266_13950	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	34	2e-06
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 33.6 bits (77), Expect = 2e-06
		 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
		
		Query: 1  MPQKTIIVGML--CLTMLLTVWVLHASPCEFRVSFMWSEIAAFLQCKP 46
		          +P+ +++  +L  CLT+L+  ++   S CE R    + E+AAF+  + 
		Sbjct: 3  LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
		
		
	2667#JEONG1266_13990	UREASE#Urea amidohydrolase (urease) protein signature.	1078	0.0
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 1078 bits (2791), Expect = 0.0
		 Identities = 396/566 (69%), Positives = 461/566 (81%), Gaps = 2/566 (0%)
		
		Query: 4   ISRQAYADMFGPTTGDKIRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQML-S 62
		           +SR AYA+MFGPT GDK+RLADTEL+IEVE D TT+GEEVKFGGGKVIRDGMGQ Q+   
		Sbjct: 5   MSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTRE 64
		
		Query: 63  AGCADLVLTNALIIDYWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGVSTEIIAAE 122
		            G  D V+TNALI+D+WGIVKADIG+KDGRI AIGKAGNPD+QP VTI +G  TE+IA E
		Sbjct: 65  GGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGE 124
		
		Query: 123 GRIVTAGGVDTHIHWICPQQAEEALTSGITTMIGGGTGPTAGSNATTCTPGPWYIYQMLQ 182
		           G+IVTAGG+D+HIH+ICPQQ EEAL SG+T M+GGGTGP  G+ ATTCTPGPW+I +M++
		Sbjct: 125 GKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMIE 184
		
		Query: 183 AADSLPVNIGLLGKGNCSNPDALREQVAAGVIGLKIHEDWGATPAVINCALTVADEMDVQ 242
		           AAD+ P+N+   GKGN S P AL E V  G   LK+HEDWG TPA I+C L+VADE DVQ
		Sbjct: 185 AADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDVQ 244
		
		Query: 243 VALHSDTLNESGFVEDTLTAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPSSTNPTL 302
		           V +H+DTLNESGFVEDT+ AI GRTIH +HTEGAGGGHAPDII  C  PN++PSSTNPT 
		Sbjct: 245 VMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPTR 304
		
		Query: 303 PYTVNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRQETIAAEDVLHDLGAFSLTSSDSQ 362
		           PYTVNT+ EHLDMLMVCHHL P I ED+AFAESRIR+ETIAAED+LHD+GAFS+ SSDSQ
		Sbjct: 305 PYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDSQ 364
		
		Query: 363 AMGRVGEVVLRTWQVAHRMKVQRGPLPEESGDNDNVRVKRYIAKYTINPALTHGIAHEVG 422
		           AMGRVGEV +RTWQ A +MK QRG L EE+GDNDN RVKRYIAKYTINPA+ HG++HE+G
		Sbjct: 365 AMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEIG 424
		
		Query: 423 SIEVGKLADLVLWSPAFFGVKPATIVKGGMIAMAPMGDINGSIPTPQPVHYRPMFAALGS 482
		           S+EVGK ADLVLW+PAFFGVKP  ++ GG IA APMGD N SIPTPQPVHYRPMF A G 
		Sbjct: 425 SLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYGR 484
		
		Query: 483 ARHRCRVTFLSQAAAANGVAEQLNLHSTTAVVKGCR-TVQKADMRHNSLLPDITVDSQTY 541
		           +R    VTF+SQA+   G+A +L +      V+  R  + KA M HNSL P I VD +TY
		Sbjct: 485 SRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPETY 544
		
		Query: 542 EVRINGELITSEPADILPMAQRYFLF 567
		           EVR +GEL+T EPA +LPMAQRYFLF
		Sbjct: 545 EVRADGELLTCEPATVLPMAQRYFLF 570
		
		
	2690#JEONG1266_14100	HTHFIS#FIS bacterial regulatory protein HTH signature.	26	0.025
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 25.6 bits (56), Expect = 0.025
		 Identities = 6/15 (40%), Positives = 13/15 (86%)
		
		Query: 5   SQLLGISRSTIYEKM 19
		           + LLG++R+T+ +K+
		Sbjct: 456 ADLLGLNRNTLRKKI 470
		
		
JEONG1266_14175	JEONG1266_14270	Y	Y	N	JEONG1266_14095	JEONG1266_14295
	JEONG1266_14175	0	15	-5.418503	acyl carrier protein
	JEONG1266_14180	2	13	-4.230421	beta-hydroxyacyl-ACP dehydratase
	JEONG1266_14185	2	12	-4.859679	3-oxoacyl-ACP reductase
	JEONG1266_14190	1	12	-4.637632	holo-[acyl-carrier-protein] synthase
	JEONG1266_14195	2	13	-5.165204	hemolysin
	JEONG1266_14200	1	13	-3.691126	hemagglutinin
	JEONG1266_14205	1	14	-2.385893	hypothetical protein
	JEONG1266_14210	2	23	-2.899172	fimbrial protein
	JEONG1266_14215	1	23	-2.587463	molecular chaperone
	JEONG1266_14220	1	26	-4.624814	adhesin
	JEONG1266_14225	1	29	-5.558504	molecular chaperone
	JEONG1266_14230	2	36	-10.669307	oxidoreductase
	JEONG1266_14235	1	39	-13.236301	transcriptional regulator
	JEONG1266_14240	-1	35	-11.014562	FidL
	JEONG1266_14245	-1	34	-10.280302	diguanylate phosphodiesterase
	JEONG1266_14250	-1	32	-8.773854	diguanylate cyclase
	JEONG1266_14255	-1	31	-8.212596	poly-beta-1,6 N-acetyl-D-glucosamine export
	JEONG1266_14260	-2	27	-5.987485	poly-beta-1,6-N-acetyl-D-glucosamine
	JEONG1266_14265	-2	25	-4.735549	poly-beta-1,6 N-acetyl-D-glucosamine synthase
	JEONG1266_14270	-2	20	-3.487889	poly-beta-1,6-N-acetyl-D-glucosamine
	2707#JEONG1266_14190	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	133	4e-40
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  133 bits (335), Expect = 4e-40
		 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 10/248 (4%)
		
		Query: 10  KTVLVTGASGDIGLGICEKYLEQNCDVYALYKSNDVQLTALKASHPAGDKLHIVQCDLAC 69
		           K   +TGA+  IG  +      Q   + A+  + +     + +             D+  
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68
		
		Query: 70  PQSVSALCEQIERQAGKIDVLVNNAGIVKDSLFASMSYEDFTQVIETNMFSIFRLTKDAL 129
		             ++  +  +IER+ G ID+LVN AG+++  L  S+S E++      N   +F  ++   
		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128
		
		Query: 130 MLLRAAENPAIINVASIAALIPSVGQANYSASKGAILGFTRTLAAEMAPWGVRVNAVAPG 189
		             +    + +I+ V S  A +P    A Y++SK A + FT+ L  E+A + +R N V+PG
		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
		
		Query: 190 MIESKMVKKV------SRAVVRAVTST----IPLRRLGKCEEVANTIVFLSSSASSYIVG 239
		             E+ M   +      +  V++    T    IPL++L K  ++A+ ++FL S  + +I  
		Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248
		
		Query: 240 QTIVIDGG 247
		             + +DGG
		Sbjct: 249 HNLCVDGG 256
		
		
	2710#JEONG1266_14205	PF05860#haemagglutination activity domain.	64	3e-14
		>PF05860#haemagglutination activity domain.
		          Length = 117
		
		 Score = 63.7 bits (155), Expect = 3e-14
		 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 21/126 (16%)
		
		Query: 2   KNGTVYNANGVPVVDINKPNGSGLSHNIWDNLNVDKNGVVFNNSANESSTSLAGNIQGNS 61
		            N  +       +++     GS L H+ +   +V  +G  F N+                
		Sbjct: 11  INSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNP--------------- 54
		
		Query: 62  NLTSGSAKVILNEVTSKNPSTINGMMEVAGDKADLIIANPNGITVNGGGSINTGKLTLTT 121
		                + + I++ VT  + S I+G++      A+L + NPNGI       ++ G   + +
		Sbjct: 55  ----TNIQNIISRVTGGSVSNIDGLIRANA-TANLFLINPNGIIFGQNARLDIGGSFVGS 109
		
		Query: 122 GTPDIQ 127
		               ++
		Sbjct: 110 TANRLK 115
		
		
	2713#JEONG1266_14220	SECA#SecA protein signature.	29	0.018
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 29.1 bits (65), Expect = 0.018
		 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
		
		Query: 163 VTNPTGYYVTIRAAELLNNGKKVPLANSVMIAPQSTTEW-----TLPSGISVAPGAQIHL 217
		           V     + V +    +LN            IA   T E      TLP+ ++   G  +H+
		Sbjct: 78  VFGMRHFDVQLLGGMVLNERC---------IAEMRTGEGKTLTATLPAYLNALTGKGVHV 128
		
		Query: 218 VTVNDY 223
		           VTVNDY
		Sbjct: 129 VTVNDY 134
		
		
	2716#JEONG1266_14240	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	103	7e-29
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  103 bits (259), Expect = 7e-29
		 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 11/255 (4%)
		
		Query: 15  LHNKVAIVTGAAGELGRGLCSALAKAGANLLLVDIK-EPDNRYLKHLTHEGVEVEFMTID 73
		           +  K+A +TGAA  +G  +   LA  GA++  VD   E   + +  L  E    E    D
		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65
		
		Query: 74  ITKPDASCTIINRCLERFGQLDILVNNAGVCNINRPIDFNRNDWDPMINLNLNAAFDMSQ 133
		           +    A   I  R     G +DILVN AGV         +  +W+   ++N    F+ S+
		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125
		
		Query: 134 AALNIFVPQRKGKIINMCSVLSFHGGRWSPG-YAATKHALAGLTKAYADDFAEYNIQING 192
		           +     + +R G I+ + S  +    R S   YA++K A    TK    + AEYNI+ N 
		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPA-GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184
		
		Query: 193 IAPGYYVSEMTAIIYNNPKIKE-LIKGR-------IPAQRWGRAQDLMGAMVFLASAASD 244
		           ++PG   ++M   ++ +    E +IKG        IP ++  +  D+  A++FL S  + 
		Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244
		
		Query: 245 YVNGQLLVIDGGYSI 259
		           ++    L +DGG ++
		Sbjct: 245 HITMHNLCVDGGATL 259
		
		
	2718#JEONG1266_14250	TRNSINTIMINR#Translocated intimin receptor (Tir) signature.	30	0.004
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.
		          Length = 549
		
		 Score = 30.1 bits (67), Expect = 0.004
		 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
		
		Query: 5   YFLFAGIILCAFIAAILSHIAFHHANEPAEQNISCNAHVI 44
		           Y L + +I+   I A ++  A H  N+PAEQ  +   H +
		Sbjct: 366 YGLSSALIVAGGIGAGVT-TALHRRNQPAEQTTTTTTHTV 404
		
		
	2720#JEONG1266_14260	BINARYTOXINA#Clostridial binary toxin A signature.	30	0.025
		>BINARYTOXINA#Clostridial binary toxin A signature.
		          Length = 454
		
		 Score = 29.6 bits (66), Expect = 0.025
		 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
		
		Query: 335 DQVIKTVVNIIGKSIRPDDLLA--RVGGEEFGVLLTDIDTERAKALAERIRENVERLTGD 392
		           D  +  + N +  +  P +L+   R G +EFG+ LT  + +  K   E I    E+  G 
		Sbjct: 313 DSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNK--IENIDAFKEKWEGK 370
		
		Query: 393 NPEYAIPQKVTISIGAV 409
		              Y  P  ++ SIG+V
		Sbjct: 371 VITY--PNFISTSIGSV 385
		
		
	2721#JEONG1266_14265	ARGDEIMINASE#Bacterial arginine deiminase signature.	30	0.047
		>ARGDEIMINASE#Bacterial arginine deiminase signature.
		          Length = 409
		
		 Score = 29.8 bits (67), Expect = 0.047
		 Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 23/183 (12%)
		
		Query: 450 WPRAAENELKK-AEVIEPRNINLEVEQAWTALTLQEWQQA--AVLTHDVVEREPQDPGVV 506
		           +   A  E +  A +++   + +E  +   +  L          ++  ++E E +    +
		Sbjct: 47  YLEVARQEHEVFASILKNNLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTI 106
		
		Query: 507 -RLK---RAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYS---PPLKDNWRGFA 559
		             LK    ++ + N+    I+G      E  +      DL          P+ +    F 
		Sbjct: 107 NLLKDYFSSLTIDNMISKMISGVVT--EELKNYTSSLDDLVNGANLFIIDPMPNVL--FT 162
		
		Query: 560 GFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVFNHEHKPGARLSGWYDFNDN 619
		                D   S G G+    +  +  + R    E  +AE +F +       +  W +  + 
		Sbjct: 163 ----RDPFASIGNGVT---INKMFTKVRQ--RETIFAEYIFKYHPVYKENVPIWLNRWEE 213
		
		Query: 620 WRI 622
		             +
		Sbjct: 214 ASL 216
		
		
JEONG1266_14320	JEONG1266_14380	Y	Y	N	JEONG1266_14245	JEONG1266_14440
	JEONG1266_14320	-1	15	3.336964	trifunctional transcriptional regulator/proline
	JEONG1266_14325	0	14	3.485737	pyrimidine utilization regulatory protein R
	JEONG1266_14330	-1	14	4.321213	pyrimidine utilization protein A
	JEONG1266_14335	0	17	3.649611	pyrimidine utilization protein B
	JEONG1266_14340	-1	22	4.782449	pyrimidine utilization protein D
	JEONG1266_14345	0	18	4.160057	malonic semialdehyde reductase
	JEONG1266_14350	0	17	3.978414	pyrimidine utilization flavin reductase protein
	JEONG1266_14355	0	16	3.635981	pyrimidine utilization transport protein G
	JEONG1266_14360	1	14	2.269317	NAD(P)H:quinone oxidoreductase, type IV
	JEONG1266_14365	0	15	-2.834567	hypothetical protein
	JEONG1266_14370	0	14	-3.003454	bifunctional glucose-1-phosphatase/inositol
	JEONG1266_14375	0	16	-4.093932	DNA-binding protein
	JEONG1266_14380	-2	16	-4.256893	chaperone-modulator protein CbpM
	2735#JEONG1266_14335	HTHTETR#TetR bacterial regulatory protein HTH signature.	66	2e-15
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 65.8 bits (160), Expect = 2e-15
		 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 8/165 (4%)
		
		Query: 10  GKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 69
		            K  +     ++ IL  AL  FSQ G   T L +IA+ AGV++  + ++F  K  L+  +
		Sbjct: 3   RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
		
		Query: 70  LRQILDIWLAPLKAFREDF--APLAAIKEYIRLKLEVSRDYPQASRLF-CMEMLAGAPLL 126
		                         ++  F   PL+ ++E +   LE +    +   L   +         
		Sbjct: 63  WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122
		
		Query: 127 MDELTGDLKSLIDEKSALIAGWVKSG-----KLAPIDPQHLIFMI 166
		           M  +    ++L  E    I   +K         A +  +    ++
		Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
		
		
	2737#JEONG1266_14345	ISCHRISMTASE#Isochorismatase signature.	73	2e-17
		>ISCHRISMTASE#Isochorismatase signature.
		          Length = 312
		
		 Score = 72.7 bits (178), Expect = 2e-17
		 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
		
		Query: 12  TFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQ 71
		             DP ++ L++ DMQN +      +D      S    + ANI+         G+ +++  
		Sbjct: 25  VPDPNRAVLLIHDMQNYF------VDAFTAGASPVTELSANIRKLKNQCVQLGIPVVY-- 76
		
		Query: 72  NGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVL 131
		                       PGS N      L          G  L  G ++ +++ EL P+  D+VL
		Sbjct: 77  ---------TAQPGSQNPDDRALLTDF------WGPGLNSGPYEEKIITELAPEDDDLVL 121
		
		Query: 132 PKPRYSGFFNTPLDSILRSRGIRHLVFTSIATNVCVESTLRDGFFLEYFGVVLEDA 187
		            K RYS F  T L  ++R  G   L+ T I  ++    T  + F  +     + DA
		Sbjct: 122 TKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDA 177
		
		
JEONG1266_14495	JEONG1266_14865	Y	Y	Y	JEONG1266_14415	JEONG1266_14625
	JEONG1266_14495	0	17	3.021822	hydrogenase-1 operon protein HyaF
	JEONG1266_14500	0	18	2.822117	hydrogenase-1 operon protein HyaE
	JEONG1266_14505	-1	19	3.720766	hydrogenase expression/formation protein
	JEONG1266_14510	-1	18	4.001431	Ni/Fe-hydrogenase, b-type cytochrome subunit
	JEONG1266_14515	-1	20	3.913645	hydrogenase
	JEONG1266_14520	-1	19	3.449045	hydrogenase
	JEONG1266_14525	0	16	2.690926	*hypothetical protein
	JEONG1266_14530	1	15	2.748667	hypothetical protein
	JEONG1266_14535	5	24	3.767372	molecular chaperone Tir
	JEONG1266_14545	5	30	4.103475	phage tail protein
	JEONG1266_14550	6	26	5.353464	phage tail protein
	JEONG1266_14555	6	28	6.040524	enterobacterial Ail/Lom family protein
	JEONG1266_14560	6	33	6.774419	phage tail protein
	JEONG1266_14565	6	33	7.105775	phage tail protein
	JEONG1266_14575	5	33	7.024129	phage tail protein
	JEONG1266_14580	4	31	7.340045	phage minor tail protein L
	JEONG1266_14585	4	30	6.621295	phage tail protein
	JEONG1266_14590	2	28	5.900961	phage tail tape measure protein
	JEONG1266_14595	1	25	5.501683	phage tail assembly protein T
	JEONG1266_14600	1	25	5.454089	phage minor tail protein G
	JEONG1266_14605	1	23	5.479624	phage tail protein
	JEONG1266_14610	0	25	5.546144	major capsid protein E
	JEONG1266_14615	-1	25	5.855174	head decoration protein
	JEONG1266_14620	1	24	4.688980	scaffolding protein
	JEONG1266_14625	1	24	5.320393	phage portal protein
	JEONG1266_14630	2	24	5.432706	phage tail protein
	JEONG1266_14635	1	24	4.199909	transposase
	JEONG1266_14640	2	22	3.474240	isocitrate lyase
	JEONG1266_14645	2	22	3.189702	transposase
	JEONG1266_14650	3	23	4.202338	hypothetical protein
	JEONG1266_14655	5	25	-0.891449	hypothetical protein
	JEONG1266_14660	5	29	-4.774951	holin
	JEONG1266_14665	2	24	-3.671539	hypothetical protein
	JEONG1266_14670	3	25	-3.700139	hypothetical protein
	JEONG1266_14675	3	24	-2.153991	lysozyme
	JEONG1266_14680	1	23	-2.504025	hypothetical protein
	JEONG1266_14685	1	22	0.070900	endopeptidase
	JEONG1266_14690	2	20	1.953313	transcriptional regulator
	JEONG1266_14695	3	22	2.778663	transposase
	JEONG1266_14705	2	23	0.888648	transposase
	JEONG1266_14710	3	21	1.070063	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_14715	3	23	-2.331714	**transcriptional regulator
	JEONG1266_14720	4	26	-3.433745	hypothetical protein
	JEONG1266_14725	4	39	-8.055700	CAAX protease
	JEONG1266_14740	2	31	-5.316135	antitermination protein
	JEONG1266_14745	2	30	-4.144800	endodeoxyribonuclease
	JEONG1266_14750	1	31	-4.118443	hypothetical protein
	JEONG1266_14760	0	27	-4.137686	hypothetical protein
	JEONG1266_14765	0	27	-3.522457	hypothetical protein
	JEONG1266_14770	0	28	-4.282588	iroE
	JEONG1266_14775	1	26	-2.882197	hypothetical protein
	JEONG1266_14780	2	27	-3.254794	hypothetical protein
	JEONG1266_14785	3	22	-0.332280	DNA replication protein DnaC
	JEONG1266_14790	3	21	-0.353150	DNA-binding protein
	JEONG1266_14795	5	22	-1.313018	hypothetical protein
	JEONG1266_14800	6	26	-2.188969	Rha family transcriptional regulator
	JEONG1266_14805	3	33	-4.656106	hypothetical protein
	JEONG1266_14810	1	32	-4.546086	XRE family transcriptional regulator
	JEONG1266_14815	3	40	-7.490711	antitoxin
	JEONG1266_14820	3	39	-8.338999	plasmid stabilization protein ParE
	JEONG1266_14825	2	39	-7.677991	hypothetical protein
	JEONG1266_14830	1	36	-7.990300	hypothetical protein
	JEONG1266_14835	1	35	-8.859815	hypothetical protein
	JEONG1266_14840	1	23	-4.749439	hypothetical protein
	JEONG1266_14845	1	23	-4.084506	cell division inhibition protein DicB
	JEONG1266_14850	1	24	-4.224124	hypothetical protein
	JEONG1266_14855	0	19	-4.020404	exonuclease
	JEONG1266_14860	0	18	-3.811078	histone-lysine N-methyltransferase
	JEONG1266_14865	0	16	-3.247063	BAX inhibitor protein
	2778#JEONG1266_14565	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	43	2e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 42.7 bits (100), Expect = 2e-06
		 Identities = 46/289 (15%), Positives = 91/289 (31%), Gaps = 30/289 (10%)
		
		Query: 9    LKDGTGKPVENCTIQLKARRTSSTVVVNTVASENPDE-AGRYSMDVEYGQYSVILLVEGF 67
		            + D TG+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 68   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 127
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 128  ETSARNAGISASQAEESAANADTSAGDASESARQAA-ESAAAAKQSEEASSSSASAAAQK 186
		            ET A N+   +   E++  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 187  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 228
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 229  AQSAEQSRIAAEEAVNRIPTVVGPPGPKGEPGPAGPQGPKGDKGERGDT 277
		             QS   +    E+      + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	2779#JEONG1266_14570	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	5e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (349), Expect = 5e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGMVTSFSYAGDRNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
	2785#JEONG1266_14600	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	40	4e-05
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 40.0 bits (93), Expect = 4e-05
		 Identities = 33/256 (12%), Positives = 69/256 (26%), Gaps = 21/256 (8%)
		
		Query: 367 ENARLGLAAATLQSDMEKAGELAARDRAERDASQLKYTGEAQK---------AYERLLTP 417
		           +N+ L      L+   ++  E  +  + +   +    + +A K           E+ L  
		Sbjct: 72  KNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEG 131
		
		Query: 418 LEKYTARQEELNKALKDGKILRADYNTLMAAAKKDYESTLKKPKSSGVKVSAGERQEDQA 477
		              ++       K L+  K   A     +  A +   +      +    + A +   +  
		Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191
		
		Query: 478 HAALLALETELRTLEKHSGANEKISQQRRDLWKAENQYAVLKEAATKRQLSEQEKSLLAH 537
		            A L               A  K  +  +    A                +     +   
		Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251
		
		Query: 538 KDETLEYKRQLAELGDKVEYQKRLNELAQQAVRFEEQQSAKQAAISAKARGL-------- 589
		           + E    + + AEL   +E     +      ++  E + A   A  A             
		Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311
		
		Query: 590 ----TDRQAQRESEAQ 601
		                D  A RE++ Q
		Sbjct: 312 QSLRRDLDASREAKKQ 327
		
		
	2788#JEONG1266_14615	INTIMIN#Intimin signature.	33	0.001
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 33.1 bits (75), Expect = 0.001
		 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
		
		Query: 130 KEVITRTVKVTNVGKPSVAEERSKITPVSAIKVTP-------------TSGTVAKGKTTT 176
		           ++ IT TVKV    KP   +E +  T +  +  +              TS T  K   + 
		Sbjct: 675 QDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSA 734
		
		Query: 177 LT--VSFEPESATDKTFRAVSADPSKATI--SVKDMTITVNGVATGKVQIPVVSGNGQF 231
		               V+ + ++   + F  ++ D     I  +     +    +  G+V +    GNG++
		Sbjct: 735 RVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKY 793
		
		
	2816#JEONG1266_14775	HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.	66	6e-19
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.
		          Length = 52
		
		 Score = 66.4 bits (162), Expect = 6e-19
		 Identities = 19/46 (41%), Positives = 32/46 (69%)
		
		Query: 23 QKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYEP 68
		          + +++  ++++CLT+++   +TRK LCE+R R G  EVA F AYE 
		Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50
		
		
JEONG1266_15375	JEONG1266_15425	Y	Y	N	JEONG1266_15295	JEONG1266_15500
	JEONG1266_15375	-3	17	3.214426	NADH oxidoreductase
	JEONG1266_15380	-1	14	3.515127	pyruvate dehydrogenase
	JEONG1266_15385	-1	15	3.436025	low-specificity L-threonine aldolase
	JEONG1266_15390	0	13	3.016129	NAD(P)-dependent oxidoreductase
	JEONG1266_15395	0	18	-4.287992	hypothetical protein
	JEONG1266_15400	1	22	-6.948650	N-acetylmuramoyl-L-alanine amidase
	JEONG1266_15405	1	26	-8.302191	hypothetical protein
	JEONG1266_15410	-1	27	-9.502783	hypothetical protein
	JEONG1266_15420	-1	20	-7.178968	hypothetical protein
	JEONG1266_15425	2	19	0.365820	hypothetical protein
	2937#JEONG1266_15395	NUCEPIMERASE#Nucleotide sugar epimerase signature.	54	6e-10
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 53.6 bits (129), Expect = 6e-10
		 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
		
		Query: 4   RILVLGASGYIGQHLVRTLSQQGHQILA---------AARHVDRLAKLQLANVSCHKVDL 54
		           + LV GA+G+IG H+ + L + GHQ++           +    RL  L       HK+DL
		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61
		
		Query: 55  SWPDNLPALLQD--IDTVYFLVH------SMGEGGDFIAQERQVALNFRDALREVPVKQL 106
		           +  + +  L      + V+   H      S+     +        LN  +  R   ++ L
		Sbjct: 62  ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121
		
		Query: 107 IFLSS 111
		           ++ SS
		Sbjct: 122 LYASS 126
		
		
	2938#JEONG1266_15400	NUCEPIMERASE#Nucleotide sugar epimerase signature.	75	2e-17
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 75.2 bits (185), Expect = 2e-17
		 Identities = 70/363 (19%), Positives = 123/363 (33%), Gaps = 65/363 (17%)
		
		Query: 1   MKVLVTGATSGLGRNAVEFLCQKGISVRA---------TGRNEAMGKLLEKMGAEFVPAD 51
		           MK LVTGA   +G +  + L + G  V               +A  +LL + G +F   D
		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60
		
		Query: 52  LTELVSSQAKVMLAGIDTLWHCS-------SFTSPWGTQQAFDLANVRATRRLGEWAVAW 104
		           L +             + ++          S  +P     A+  +N+     + E     
		Sbjct: 61  LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH----AYADSNLTGFLNILEGCRHN 116
		
		Query: 105 GVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFT 164
		            +++ ++ SS S+Y   +       D       + +A +K A+E + +  S        T
		Sbjct: 117 KIQHLLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPAT 174
		
		Query: 165 ILRPQSLFGPHDK--VFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEA 222
		            LR  +++GP  +  + + +    M    SI + + G    D TY ++   A+       
		Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234
		
		Query: 223 CDKLPS--------------GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLD 268
		                                RVYNI N     L   +Q L D L I+ +   +P    D
		Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294
		
		Query: 269 MIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAW 328
		           +                  T             D     E +G+ P  T+ +G++    W
		Sbjct: 295 V----------------LETS-----------ADTKALYEVIGFTPETTVKDGVKNFVNW 327
		
		Query: 329 LRD 331
		            RD
		Sbjct: 328 YRD 330
		
		
	2939#JEONG1266_15405	ECOLIPORIN#E.coli/Salmonella-type porin signature.	29	0.025
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.
		          Length = 383
		
		 Score = 28.7 bits (64), Expect = 0.025
		 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
		
		Query: 2  RRVFWLIAVALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRIKVLVIHYTADD 55
		          R+V  L+  ALL AG A    I  K+G +LD        Y ++  L  HY +DD
		Sbjct: 3  RKVLALVIPALLAAGAAHAAEIYNKDGNKLDL-------YGKVDGL--HYFSDD 47
		
		
JEONG1266_15590	JEONG1266_15650	Y	N	N	JEONG1266_15515	JEONG1266_15710
	JEONG1266_15590	0	11	-3.247771	aldose dehydrogenase
	JEONG1266_15595	-1	12	-6.429448	transcriptional regulator
	JEONG1266_15600	-1	11	-5.601727	ribosomal protein S12 methylthiotransferase
	JEONG1266_15605	0	14	-5.842837	addiction module toxin RelE
	JEONG1266_15610	0	15	-4.233660	transcriptional regulator
	JEONG1266_15615	0	15	-2.756540	lipoprotein YliF
	JEONG1266_15620	1	15	-1.322389	c-di-GMP phosphodiesterase
	JEONG1266_15625	-1	16	2.251778	glutathione ABC transporter permease GsiD
	JEONG1266_15630	-1	14	2.968854	glutathione ABC transporter permease GsiC
	JEONG1266_15635	-1	13	3.192160	glutathione ABC transporter substrate-binding
	JEONG1266_15640	-1	13	3.764038	glutathione ABC transporter ATP-binding protein
	JEONG1266_15645	-1	15	4.128155	hypothetical protein
	JEONG1266_15650	-2	14	3.729962	L-asparaginase
JEONG1266_15785	JEONG1266_15835	Y	Y	N	JEONG1266_15710	JEONG1266_15905
	JEONG1266_15785	0	15	-3.073848	malate/lactate/ureidoglycolate dehydrogenase
	JEONG1266_15790	0	17	-3.608855	DNA-binding protein YbiB
	JEONG1266_15795	0	13	-2.203245	ATP-dependent DNA helicase DinG
	JEONG1266_15800	-1	13	-2.706782	type III effector
	JEONG1266_15805	-2	13	-2.463175	hypothetical protein
	JEONG1266_15810	-2	13	-2.288424	ATP-dependent RNA helicase RhlE
	JEONG1266_15815	-2	19	3.640803	transcriptional regulator
	JEONG1266_15820	-2	19	3.780045	secretion protein HlyD
	JEONG1266_15825	-2	21	3.503608	multidrug ABC transporter ATP-binding protein
	JEONG1266_15830	-2	21	3.608952	hypothetical protein
	JEONG1266_15835	-2	21	3.129894	hypothetical protein
	3020#JEONG1266_15820	SECA#SecA protein signature.	30	0.025
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 29.8 bits (67), Expect = 0.025
		 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
		
		Query: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI 304
		           Q VLV T +   +  ++ +L K GI+   ++    +  A   A A + +    V +AT++
		Sbjct: 450 QPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNM 506
		
		Query: 305 AARGLDI 311
		           A RG DI
		Sbjct: 507 AGRGTDI 513
		
		
	3021#JEONG1266_15825	HTHTETR#TetR bacterial regulatory protein HTH signature.	73	7e-18
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 72.7 bits (178), Expect = 7e-18
		 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 17/214 (7%)
		
		Query: 9   KGEQAKKQLIAAALAQFGEYGMNATT-REIAAQAGQNIAAITYYFGSKEDLYLACAQWIA 67
		           + ++ ++ ++  AL  F + G+++T+  EIA  AG    AI ++F  K DL+    +   
		Sbjct: 8   EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67
		
		Query: 68  DFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQL 127
		             IGE      E   +    P    + +RE+++    + +    +   + +  F   E +
		Sbjct: 68  SNIGELEL---EYQAKFPGDP---LSVLREILIHVLESTVTEERRRLLMEII-FHKCEFV 120
		
		Query: 128 SPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETIL 187
		              A        +    +  + + +      +A      L T      +  +  G     
		Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKH--CIEAKMLPADLMTRRAAIIMRGYISG----- 173
		
		Query: 188 LRTGWTAFDEEKTELINQTVTCHIDLILQGLSQR 221
		           L   W    +     + +    ++ ++L+     
		Sbjct: 174 LMENWLFAPQSFD--LKKEARDYVAILLEMYLLC 205
		
		
	3022#JEONG1266_15830	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	62	6e-13
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 62.2 bits (151), Expect = 6e-13
		 Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 25/259 (9%)
		
		Query: 82  ALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRT 141
		              Q +  +   +A+   +LA     E        +    +    +    +   L +   
		Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260
		
		Query: 142 ISA--NDLENARSSRDQAQATLKSAQDKLRQYRSGNREQ---DIAQAKASLEQAQAQLAQ 196
		                N+L   +S  +Q ++ + SA+++ +      + +    + Q   ++     +LA+
		Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320
		
		Query: 197 AELNLQDSTLIAPSDGTLLTRAV-EPGTVLNEGGTVFTVSLT-RPVWVRAYVDERNLDQA 254
		            E   Q S + AP    +    V   G V+    T+  +      + V A V  +++   
		Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380
		
		Query: 255 QPGRKVLLYTDGRPDKPYH---GQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVT--- 308
		             G+  ++  +  P   Y    G++  ++  A          D R  LV+ + I +    
		Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENC 432
		
		Query: 309 ----DADDALRQGMPVTVQ 323
		               + +  L  GM VT +
		Sbjct: 433 LSTGNKNIPLSSGMAVTAE 451
		
		
	3023#JEONG1266_15835	PF05272#Virulence-associated E family protein	32	0.012
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 31.6 bits (71), Expect = 0.012
		 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
		
		Query: 293 TPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAV 352
		            PR E   + +LG       P               +   + + K         HV   +
		Sbjct: 547 VPRLEKWLVHVLGKTPDDYKP-------------RRLRYLQLVGKYI----LMGHVARVM 589
		
		Query: 353 KRGEIFG----LLGPNGAGKSTTFKMMCGL 378
		           + G  F     L G  G GKST    + GL
		Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
		
		
		
		 Score = 29.7 bits (66), Expect = 0.046
		 Identities = 11/23 (47%), Positives = 13/23 (56%)
		
		Query: 34  YVTGLVGPDGAGKTTLMRMLAGL 56
		           Y   L G  G GK+TL+  L GL
		Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
		
		
	3025#JEONG1266_15845	ABC2TRNSPORT#ABC-2 type transport system membrane protein signat...	47	3e-08
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein
		           signature.
		          Length = 262
		
		 Score = 47.2 bits (112), Expect = 3e-08
		 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
		
		Query: 197 AREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALF 256
		            R   Q T + +L + L    I +G+   A   A         IG+ A  + +   L+L 
		Sbjct: 92  GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA---GIGVVAAALGYTQWLSLL 148
		
		Query: 257 YFTMVI--YGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQN 314
		           Y   VI   GL+    G+++++L  +         + + P + LSG V PV+ +P+  Q 
		Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208
		
		Query: 315 LTWINPIRHFTDITKQIYLKDASLDI 340
		                P+ H  D+ + I L    +D+
		Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDV 234
		
		
JEONG1266_15910	JEONG1266_16175	Y	Y	N	JEONG1266_15835	JEONG1266_16030
	JEONG1266_15910	-2	13	3.639766	malonyl-[acyl-carrier protein]
	JEONG1266_15915	1	14	4.244157	8-amino-7-oxononanoate synthase
	JEONG1266_15920	0	13	2.869204	biotin synthase
	JEONG1266_15925	-1	14	2.294932	adenosylmethionine--8-amino-7-oxononanoate
	JEONG1266_15930	-1	19	-1.557213	kinase inhibitor
	JEONG1266_15935	1	26	-3.843162	T3SS effector protein NleD
	JEONG1266_15940	6	45	-9.622985	hypothetical protein
	JEONG1266_15945	9	49	-10.513532	T3SS effector protein NleH
	JEONG1266_15950	7	41	-5.761291	peptidase M85
	JEONG1266_15955	5	37	-4.805410	non-LEE encoded effector protein NleB
	JEONG1266_15960	2	23	0.317951	phage tail protein
	JEONG1266_15965	2	25	1.945982	phage tail protein
	JEONG1266_15970	3	27	5.321348	enterobacterial Ail/Lom family protein
	JEONG1266_15975	3	26	5.566981	host specificity protein J
	JEONG1266_15980	3	26	4.902258	phage tail protein
	JEONG1266_15985	2	22	4.028161	phage tail protein
	JEONG1266_15990	3	24	3.599247	phage minor tail protein L
	JEONG1266_15995	3	26	3.083998	phage tail protein
	JEONG1266_16000	3	25	2.634034	phage tail tape measure protein
	JEONG1266_16005	4	26	2.307894	phage tail assembly protein T
	JEONG1266_16010	4	26	2.615801	phage minor tail protein G
	JEONG1266_16015	7	28	3.185712	phage tail protein
	JEONG1266_16020	5	27	2.643034	phage tail protein
	JEONG1266_16025	5	20	1.394201	phage tail protein
	JEONG1266_16030	5	23	1.000067	DNA breaking-rejoining protein
	JEONG1266_16035	3	23	1.287083	recombinase RecA
	JEONG1266_16040	3	23	0.983530	peptidase S14
	JEONG1266_16045	3	20	1.709950	phage portal protein
	JEONG1266_16055	3	20	2.085072	phage portal protein
	JEONG1266_16060	3	19	1.911836	hypothetical protein
	JEONG1266_16065	4	20	1.603211	DNA packaging protein
	JEONG1266_16070	4	19	1.179070	terminase
	JEONG1266_16075	4	28	-1.376140	hypothetical protein
	JEONG1266_16080	1	32	-1.435450	hypothetical protein
	JEONG1266_16085	2	32	-1.035233	hypothetical protein
	JEONG1266_16090	1	28	-5.753171	endopeptidase
	JEONG1266_16095	1	30	-5.900001	lysozyme
	JEONG1266_16100	2	33	-7.652120	holin
	JEONG1266_16105	2	31	-8.422485	hypothetical protein
	JEONG1266_16110	2	32	-8.500377	antitermination protein
	JEONG1266_16120	3	30	-6.765201	hypothetical protein
	JEONG1266_16125	2	25	-5.571907	serine/threonine protein phosphatase
	JEONG1266_16130	1	24	-1.824234	protein ninG
	JEONG1266_16135	1	26	-0.627576	protein ninF
	JEONG1266_16140	2	27	-0.755141	protein ninE
	JEONG1266_16145	0	27	-0.935951	exonuclease
	JEONG1266_16150	2	26	-0.831112	cruciferin
	JEONG1266_16155	2	30	-4.412522	hypothetical protein
	JEONG1266_16160	4	37	-7.409876	hypothetical protein
	JEONG1266_16165	5	39	-7.272987	conjugal transfer protein TraR
	JEONG1266_16170	5	42	-6.900642	hypothetical protein
	JEONG1266_16175	2	27	-3.826923	hypothetical protein
	3047#JEONG1266_15955	YERSSTKINASE#Yersinia serine/threonine protein kinase signature.	29	0.039
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.
		          Length = 732
		
		 Score = 28.6 bits (63), Expect = 0.039
		 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
		
		Query: 200 RMDKINGESLLNISSLPAQAEHAIYDMFDRLEQKGILFVDTTETNILYDRAKNEFNPIDI 259
		           +  KIN E+        A   H + D+ + L + G++  D    N+++DRA  E   ID+
		Sbjct: 234 KQGKINSEAYWGTIKFIA---HRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDL 290
		
		Query: 260 SSYNVS 265
		             ++ S
		Sbjct: 291 GLHSRS 296
		
		
	3051#JEONG1266_15975	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	41	9e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 41.2 bits (96), Expect = 9e-06
		 Identities = 45/289 (15%), Positives = 89/289 (30%), Gaps = 30/289 (10%)
		
		Query: 10   LKDGAGKPIQNCTIQLKARRNSTTVVVNTVASENPDE-AGRYSMDVEYGQYSVTLLVEGF 68
		            + D  G+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 69   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 128
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 129  ETSARNAGISASQAEESAANADTSAGDASESARQAA-ESAAAAKQSEEASSSSASAAAQK 187
		            ET A N+   +   E++  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 188  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 229
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 230  AQSAEQSRIAAEDAVNRIPTVVGPPGPKGEPGPAGPQGPKGDKGERGDT 278
		             QS   +    E       + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	3052#JEONG1266_15980	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	144	2e-46
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  144 bits (365), Expect = 2e-46
		 Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
		
		Query: 1   MRKVCAAILSAAICLAVSGVPAWASEHQSTLSAGYLHASTDAPG-SDDLNGINVKYRYEF 59
		           M+K+      AA+    +G    A    ST++ GY  A +DA G  + + G N+KYRYE 
		Sbjct: 1   MKKIACLSALAAVLAFTAGTSVAA---TSTVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
		
		Query: 60  TDT-LGLITSFSYANAEDEQKTHYSDTRWHEDYVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
		            ++ LG+I SF+Y        T  S T    DY +N+++ + AGP+ R+N+W S Y + G
		Sbjct: 56  DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
		
		Query: 119 VAYSRVSTFSGDYFRVTDNKRKTHDVLTGSDDARYSNTSLAWGAGVQFNPTESVAVDVAY 178
		           V Y +  T               +           S+   ++GAG+QFNP E+VA+D +Y
		Sbjct: 108 VGYGKFQT-------------TEYPTYKHDT----SDYGFSYGAGLQFNPMENVALDFSY 150
		
		Query: 179 EGSGSGDWRTDGFIVGVGYKF 199
		           E S         +I GVGY+F
		Sbjct: 151 EQSRIRSVDVGTWIAGVGYRF 171
		
		
	3053#JEONG1266_15985	SURFACELAYER#Lactobacillus surface layer protein signature.	33	0.005
		>SURFACELAYER#Lactobacillus surface layer protein signature.
		          Length = 439
		
		 Score = 33.5 bits (76), Expect = 0.005
		 Identities = 34/143 (23%), Positives = 45/143 (31%), Gaps = 30/143 (20%)
		
		Query: 965  SVNANSGTLNNVTVNENCTIKGMLEATQV----RGDF---------VKAVSKSFPKQAGT 1011
		            +   +   L NVT +    +K  L+A ++     G F         VKA S    K A  
		Sbjct: 235  AAQYDKKQLTNVTFDTETAVKDALKAQKIEVSSVGYFKAPHTFTVNVKATSNKNGKSATL 294
		
		Query: 1012 WGNTETPNGTVTVTISDDHNFDRQIIIPPIIFNGIAYSDPGSGNNPGGTRYTGYGFEVRK 1071
		                  PN    V  S             I+ N   Y            +  G     R 
		Sbjct: 295  PVTVTVPNVADPVVPSQSKT---------IMHNAYFYDKDA--------KRVGTDKVTRY 337
		
		Query: 1072 NGVLIASRETKGAIPGSYSAVID 1094
		            N V +A   TK A   SY  VI+
		Sbjct: 338  NTVTVAMNTTKLANGISYYEVIE 360
		
		
	3058#JEONG1266_16010	cloacin#Cloacin signature.	44	3e-06
		>cloacin#Cloacin signature.
		          Length = 551
		
		 Score = 43.5 bits (102), Expect = 3e-06
		 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
		
		Query: 519 DQQRLNDLQEKKRQKDLQDAK--EQAERNYQEQQKRRNAENAALNRMNETEAARHQREIA 576
		           DQ +    +E +RQ++       E AERNY+  +   N  N  + R  E +A   Q   +
		Sbjct: 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNS 353
		
		Query: 577 RINAMQYADQAVRDA-AIQRENERYEKALASGKKKTRETRNDEATRLLLQYSQQQAQVEG 635
		           R + +  A++ + DA A  ++  R+     +G  +  +    +A R     + +QA  + 
		Sbjct: 354 RKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413
		
		Query: 636 QIAAARQSAGIATERMTEARKQ 657
		             A  +  A  A     E+RK+
		Sbjct: 414 -AAKEKSDADAALSSAMESRKK 434
		
		
	3082#JEONG1266_16135	TYPE4SSCAGX#Type IV secretion system CagX conjugation protein si...	29	0.013
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein
		           signature.
		          Length = 522
		
		 Score = 29.0 bits (64), Expect = 0.013
		 Identities = 14/41 (34%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
		
		Query: 35  KIALERRSKEREKAEKAEKAAEKKRRREEQKQKDKLKIQKL 75
		           K ALE+  + +E+A+KA+K  +K+ +R+E++ K++  ++ L
		Sbjct: 145 KKALEKEKEAKEQAQKAQK--DKREKRKEERAKNRANLENL 183
		
		
	3086#JEONG1266_16160	TCRTETB#Tetracycline resistance protein TetB signature.	24	0.037
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 24.1 bits (52), Expect = 0.037
		 Identities = 7/23 (30%), Positives = 11/23 (47%)
		
		Query: 10  VGTITFVYSVTKRGWVFPGLSVI 32
		           VG + F+   T     F  +SV+
		Sbjct: 209 VGIVFFMLFTTSYSISFLIVSVL 231
		
		
JEONG1266_16310	JEONG1266_16410	Y	Y	N	JEONG1266_16235	JEONG1266_16465
	JEONG1266_16310	3	17	-0.319241	peptidoglycan-associated lipoprotein
	JEONG1266_16315	3	19	0.166376	Tol-Pal system beta propeller repeat protein
	JEONG1266_16355	3	21	0.148039	cell envelope integrity protein TolA
	JEONG1266_16360	3	22	0.320985	protein TolR
	JEONG1266_16365	3	18	0.257189	protein TolQ
	JEONG1266_16370	7	16	-0.352124	tol-pal system-associated acyl-CoA thioesterase
	JEONG1266_16375	0	19	0.172388	cyd operon protein YbgE
	JEONG1266_16380	0	23	0.639943	cyd operon protein YbgT
	JEONG1266_16385	1	20	-1.776507	cytochrome d ubiquinol oxidase subunit II
	JEONG1266_16390	1	21	-2.878168	cytochrome d terminal oxidase subunit 1
	JEONG1266_16395	1	22	-3.817879	hypothetical protein
	JEONG1266_16400	1	21	-3.734632	hypothetical protein
	JEONG1266_16405	0	18	-3.628225	hypothetical protein
	JEONG1266_16410	-1	22	-3.848453	methylaspartate mutase subunit S
	3118#JEONG1266_16360	OMPADOMAIN#OMPA domain signature.	116	5e-34
		>OMPADOMAIN#OMPA domain signature.
		          Length = 346
		
		 Score =  116 bits (292), Expect = 5e-34
		 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
		
		Query: 55  EEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSN--PSYKVTVEGHADER 112
		                +Q +     + V F+ +K  ++ +    LD   + L +       V V G+ D  
		Sbjct: 205 APAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI 264
		
		Query: 113 GTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVL 171
		           G+  YN  L ERRA +V  YL  KG+ AD+IS    G+  P V G+      K R A++
		Sbjct: 265 GSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP-VTGN-TCDNVKQRAALI 321
		
		
	3120#JEONG1266_16370	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	58	4e-11
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 58.2 bits (140), Expect = 4e-11
		 Identities = 26/206 (12%), Positives = 64/206 (31%), Gaps = 8/206 (3%)
		
		Query: 99   EQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADDKAAEE 158
		            E E+  Q             QA+  +  +  ++    + A          +E  +  AE 
		Sbjct: 984  EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043
		
		Query: 159  AAKKAAADAKKKAEAEAAKA-----AAEAQKKAEAAAAALKKKAEAAEAAAAEARKKAAA 213
		            + +++    K + +A    A     A EA+   +A     +     +E    +  +    
		Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103
		
		Query: 214  EKAAADKKAAEKAAADKKAAEKAAAEKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAA 273
		                 ++KA  +    ++  +  +      E++   +  AE A             E  +
		Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV---NIKEPQS 1160
		
		Query: 274  ADKKAAAAKAAAEKAAAAKAAAEADD 299
		                 A  +  A++ ++       + 
		Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTES 1186
		
		
		
		 Score = 55.5 bits (133), Expect = 3e-10
		 Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 7/227 (3%)
		
		Query: 86   QQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADA 145
		            +  AE  +++    +   K  +       + ++ A+EA    +   +  E A + +    
		Sbjct: 1038 ETVAENSKQESKTVE---KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094
		
		Query: 146  KAKAEADDKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAA 205
		                E  + A  E  +KA  + +K    E  K  ++   K E +     +   A E    
		Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKT--QEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152
		
		Query: 206  EARKKAAAE--KAAADKKAAEKAAADKKAAEKAAAEKAAAEKAAADKKAAEKAAAEKAAA 263
		               K+  ++    A  ++ A++ +++ +     +           + +    A  +    
		Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212
		
		Query: 264  DKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEADDIFGELSSGKNA 310
		             + +   K    +   +     E A  +        +    S+  NA
		Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNA 1259
		
		
		
		 Score = 55.1 bits (132), Expect = 4e-10
		 Identities = 30/229 (13%), Positives = 74/229 (32%), Gaps = 1/229 (0%)
		
		Query: 66   RMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
		            R  ++E+ +      +  +  Q+  E +E Q  E +    +EKE  A  E +K  E    
		Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125
		
		Query: 126  QAELKQKQAEEAAAKAAADAKAKAEADDKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKK 185
		             +++  KQ +    +  A+   + +      +E   +    A  +  A+   +  E    
		Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDP-TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184
		
		Query: 186  AEAAAAALKKKAEAAEAAAAEARKKAAAEKAAADKKAAEKAAADKKAAEKAAAEKAAAEK 245
		                        E  E       +     +++   K   + +          A  ++ ++
		Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244
		
		Query: 246  AAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAA 294
		            +                +D +A A+  A +   A ++  ++     +  
		Sbjct: 1245 STVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293
		
		
		
		 Score = 53.9 bits (129), Expect = 9e-10
		 Identities = 37/273 (13%), Positives = 94/273 (34%), Gaps = 27/273 (9%)
		
		Query: 51   DAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAE-ELREKQAAEQER------L 103
		            D   V   A     +  ++   ++K+  +  +  EQ A E   + ++ A++ +       
		Sbjct: 1021 DEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080
		
		Query: 104  KQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADDKAAEEAAKKA 163
		            +  E  +  ++ ++ Q     K+    +K+            KAK E +    +E  K  
		Sbjct: 1081 QTNEVAQSGSETKETQ-TTETKETATVEKE-----------EKAKVETEKT--QEVPKVT 1126
		
		Query: 164  AADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAE--ARKKAAAEKAAADKK 221
		            +  + K+ ++E  +  AE  ++ +      + +++    A  E  A++ ++  +    + 
		Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186
		
		Query: 222  AAEKAAAD----KKAAEKAAAEKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKK 277
		                         +    A  +     +++   K   + +      + + A   +     
		Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246
		
		Query: 278  AAAAKAAAEKAAAAKAAAEADDIFGELSSGKNA 310
		             A     +    A  + A A   F  L+ GK  
		Sbjct: 1247 VALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
		
		
		
		 Score = 53.1 bits (127), Expect = 1e-09
		 Identities = 29/239 (12%), Positives = 76/239 (31%), Gaps = 11/239 (4%)
		
		Query: 68   QSQESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127
		            Q+   S   ++E+    ++           +E         ++ +   +K   E+ A + 
		Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN--EQDATET 1061
		
		Query: 128  ELKQKQ-AEEAAAKAAAD------AKAKAEADDKAAEEAAKKAAADAKKKAEAEAAKAAA 180
		              + ++ A+EA +   A+      A++ +E  +    E  + A  + ++KA+ E  K   
		Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121
		
		Query: 181  EAQKKAEAAAAALKKKAE--AAEAAAAEARKKAAAEKAAADKKAAEKAAADKKAAEKAAA 238
		              +  ++ +    + +     AE A          E  +     A+     K+ +     
		Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181
		
		Query: 239  EKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKAAAEKAAAAKAAAEA 297
		                +          E       A  +     +++   K    ++        + A  +
		Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240
		
		
JEONG1266_16550	JEONG1266_16625	Y	N	N	JEONG1266_16470	JEONG1266_16675
	JEONG1266_16550	0	15	3.846247	hypothetical protein
	JEONG1266_16555	-1	13	2.613394	hypothetical protein
	JEONG1266_16560	-1	14	2.764474	Nif3-like dinuclear metal center hexameric
	JEONG1266_16565	-1	14	2.070797	peptide permease
	JEONG1266_16570	-3	13	-0.540274	deoxyribodipyrimidine photo-lyase
	JEONG1266_16580	-2	16	-3.958301	hypothetical protein
	JEONG1266_16585	-2	17	1.530989	hypothetical protein
	JEONG1266_16590	-1	19	1.326184	hypothetical protein
	JEONG1266_16595	0	22	1.513057	hypothetical protein
	JEONG1266_16600	1	21	3.907079	RHS element protein
	JEONG1266_16605	-1	19	4.596959	hypothetical protein
	JEONG1266_16610	0	21	5.703707	K+-transporting ATPase subunit F
	JEONG1266_16615	-2	17	4.590684	potassium-transporting ATPase subunit KdpA
	JEONG1266_16620	-2	18	4.780406	K+-transporting ATPase subunit B
	JEONG1266_16625	-2	17	4.352682	K+-transporting ATPase subunit C
JEONG1266_17060	JEONG1266_17170	Y	Y	N	JEONG1266_16980	JEONG1266_17180
	JEONG1266_17060	-2	18	-3.586248	alkyl hydroperoxide reductase subunit F
	JEONG1266_17065	-2	17	-3.792720	peroxiredoxin
	JEONG1266_17070	-3	14	-3.882666	thiol:disulfide interchange protein DsbG
	JEONG1266_17075	-2	17	-2.612673	LysR family transcriptional regulator
	JEONG1266_17080	-2	19	-2.236542	phosphoadenosine phosphosulfate reductase
	JEONG1266_17085	-2	14	1.737747	hypothetical protein
	JEONG1266_17090	-1	18	3.327781	methionine aminotransferase
	JEONG1266_17095	-1	18	4.556857	oxidoreductase
	JEONG1266_17100	-1	19	4.832612	hypothetical protein
	JEONG1266_17105	-2	21	4.812734	carbon starvation protein A
	JEONG1266_17110	-2	20	4.928913	thioesterase
	JEONG1266_17115	-2	16	4.627677	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
	JEONG1266_17120	-1	16	4.885458	isochorismatase
	JEONG1266_17125	-1	16	5.388003	2,3-dihydroxybenzoate-AMP ligase
	JEONG1266_17130	0	15	5.662124	isochorismate synthase
	JEONG1266_17135	0	15	5.639968	Fe2+-enterobactin ABC transporter
	JEONG1266_17140	1	14	3.495860	enterobactin transporter
	JEONG1266_17145	1	14	3.976863	iron-enterobactin transporter
	JEONG1266_17150	0	12	3.539108	iron-enterobactin transporter permease
	JEONG1266_17155	-1	13	2.726397	iron-enterobactin transporter ATP-binding
	JEONG1266_17160	-3	11	2.336293	LPS O-antigen length regulator
	JEONG1266_17165	-3	11	2.238586	non-ribosomal peptide synthetase
	JEONG1266_17170	-2	11	3.106220	hypothetical protein
	3252#JEONG1266_17075	BCTLIPOCALIN#Bacterial lipocalin signature.	29	0.014
		>BCTLIPOCALIN#Bacterial lipocalin signature.
		          Length = 171
		
		 Score = 28.8 bits (64), Expect = 0.014
		 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
		
		Query: 30  QGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISG--YMYNEKGENLSNTLIEK 87
		           + +  +  F+       YLGK+ ++    +    G   ++    + N+ G ++ N     
		Sbjct: 21  ESVKPVSDFEL----NNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLN----- 71
		
		Query: 88  EIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPF 125
		             Y+   +  W+  E   + ++G  D  + V  F  PF
		Sbjct: 72  RGYSEE-KGEWKEAEGKAYFVNGSTDGYLKVSFFG-PF 107
		
		
	3261#JEONG1266_17120	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	362	e-130
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  362 bits (930), Expect = e-130
		 Identities = 110/258 (42%), Positives = 150/258 (58%), Gaps = 20/258 (7%)
		
		Query: 5   GKNVWVTGAGKGIGYATALAFVEAGAKVTGFD---------------QAFAQEQYPFATE 49
		           GK  ++TGA +GIG A A      GA +   D               +A   E +P    
		Sbjct: 8   GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP---- 63
		
		Query: 50  VMDVADAAQVAQVCQRLLAETERLDVLVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 109
		             DV D+A + ++  R+  E   +D+LVN AG+LR G    LS E+W+ TF+VN  G FN
		Sbjct: 64  -ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122
		
		Query: 110 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 169
		             +        +R G+IVTV S+ A  PR  M+AY +SKAA       +GLELA   +RC
		Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182
		
		Query: 170 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDL 229
		           N+VSPGST+TDMQ +LW  ++  EQ I+G  E FK GIPL K+A+P +IA+ +LFL S  
		Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242
		
		Query: 230 ASHITLQDIVVDGGSTLG 247
		           A HIT+ ++ VDGG+TLG
		Sbjct: 243 AGHITMHNLCVDGGATLG 260
		
		
	3262#JEONG1266_17125	ISCHRISMTASE#Isochorismatase signature.	444	e-161
		>ISCHRISMTASE#Isochorismatase signature.
		          Length = 312
		
		 Score =  444 bits (1142), Expect = e-161
		 Identities = 146/299 (48%), Positives = 195/299 (65%), Gaps = 18/299 (6%)
		
		Query: 1   MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 60
		           MAIP +Q Y +P + D+PQNKV W  +P RA LLIHDMQ+YFV  +      + ++ ANI
		Sbjct: 1   MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60
		
		Query: 61  AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV 120
		             L++ C Q  IPV YTAQP  Q+ +DRALL D WGPGL   P ++K++  L P+ DD V
		Sbjct: 61  RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120
		
		Query: 121 LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180
		           L KWRYSAF R+ L +M+++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD
		Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180
		
		Query: 181 FSRDEHLMSLKYVAGRSGRVVMTEELL------PAPIPASKA-----------ALREVIL 223
		           FS ++H M+L+Y AGR    VMT+ LL      PA +  + A            +R+ I 
		Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240
		
		Query: 224 PLLDESDEPFDDD-NLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLS 281
		            LL E+ E   D  +L+D GLDSVR+M L  +WR+   ++ FV LA+ PTI+ W KLL+
		Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299
		
		
	3265#JEONG1266_17140	FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.	64	1e-13
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.
		          Length = 296
		
		 Score = 63.8 bits (155), Expect = 1e-13
		 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 35/285 (12%)
		
		Query: 40  HTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQ 99
		           H     P RIV+        LLA+               VAD   + R W     E  L 
		Sbjct: 29  HAAAIDPNRIVALEWLPVELLLALGIVPYG---------VADTINY-RLW---VSEPPLP 75
		
		Query: 100 RLYIG-----EPSTEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQA 154
		              I      EP+ E +    P  ++ SA  G S     + L+ IAP    N+ D     
		Sbjct: 76  DSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPL 131
		
		Query: 155 L-----LTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLW 209
		                 LT++ ++   +  A   +AQ++  + + K +          +          ++
		Sbjct: 132 AMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVF 191
		
		Query: 210 TPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQ 269
		            P S   ++L++ G          NA Q +        +  + LAA  + + L     + 
		Sbjct: 192 GPNSLFQEILDEYGIP--------NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNS 243
		
		Query: 270 KDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERL 314
		           KD DA+ A PL   +P V+  +   +    F     SAM  +  L
		Sbjct: 244 KDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVL 288
		
		
	3266#JEONG1266_17145	TCRTETA#Tetracycline resistance protein signature.	36	2e-04
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 36.0 bits (83), Expect = 2e-04
		 Identities = 82/394 (20%), Positives = 145/394 (36%), Gaps = 38/394 (9%)
		
		Query: 27  FISIVSLGLLGVAVPVQIQMMTHSTWQV---GLSVTLTGGAMFVGLMVGGVLADRYERKK 83
		            +  V +GL+   +P  ++ + HS       G+ + L     F    V G L+DR+ R+ 
		Sbjct: 15  ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74
		
		Query: 84  VILLARGTCGIGFIGLCLNALL--PEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGR 141
		           V+L       +   G  ++  +    P L  +Y+  +  G   + G  A  A    +   
		Sbjct: 75  VLL-------VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA-GAYIADITDG 126
		
		Query: 142 ENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPP 201
		           +   +           G V  P++GGL+   GG + +    AA     L  L     LP 
		Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM---GGFSPHAPFFAAAALNGLNFLTGCFLLPE 183
		
		Query: 202 PPQPREHPLK----SLLAGFRFLLASPLVGGIALLGGLLTMAS----AVRVLYPALADNW 253
		             +    PL+    + LA FR+     +V  +  +  ++ +      A+ V++    D +
		Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG--EDRF 241
		
		Query: 254 QMSAAQIGFLYAAIP-LGAAIGALTSGKLAHSARPGLLMLLSTLGS---FLAIGLFGLMP 309
		              A  IG   AA   L +   A+ +G +A        ++L  +     ++ +       
		Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301
		
		Query: 310 MWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGG 369
		           M    +V LA  G            ML  Q  E   G++ G   A       +G  L   
		Sbjct: 302 MAFPIMVLLASGGIGMPALQ----AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357
		
		Query: 370 LGAMMTPVASASASGFGLLIIGVLLLLVLVELRR 403
		           + A     +  + +G+  +    L LL L  LRR
		Sbjct: 358 IYA----ASITTWNGWAWIAGAALYLLCLPALRR 387
		
		
JEONG1266_17260	JEONG1266_17430	Y	Y	Y	JEONG1266_17180	JEONG1266_17385
	JEONG1266_17260	-1	22	4.370505	DNA-binding response regulator
	JEONG1266_17265	0	23	4.309440	two-component sensor histidine kinase
	JEONG1266_17270	1	24	4.041669	type VI secretion system Vgr family protein
	JEONG1266_17275	3	26	3.935850	hypothetical protein
	JEONG1266_17280	3	25	1.674041	type IV secretion protein Rhs
	JEONG1266_17285	0	20	1.436893	hypothetical protein
	JEONG1266_17290	-2	12	-0.800062	type IV secretion protein Rhs
	JEONG1266_17295	-2	11	-0.020901	hypothetical protein
	JEONG1266_17300	-1	11	-0.798995	hypothetical protein
	JEONG1266_17305	-1	11	-1.361483	type II secretion system protein E
	JEONG1266_17310	-1	12	-0.157104	phage receptor
	JEONG1266_17315	0	16	-1.427805	hypothetical protein
	JEONG1266_17320	2	22	-4.685627	transcriptional regulator
	JEONG1266_17325	2	25	-5.975578	*DNA-binding response regulator
	JEONG1266_17335	2	28	-6.146322	fimbrial protein
	JEONG1266_17340	2	24	-4.000785	adhesin
	JEONG1266_17345	1	22	-3.882918	outer membrane usher protein
	JEONG1266_17350	0	20	-2.881930	molecular chaperone
	JEONG1266_17355	-1	15	-0.316247	fimbrial protein
	JEONG1266_17360	2	19	0.811191	bifunctional methylenetetrahydrofolate
	JEONG1266_17365	3	21	1.995150	ribosome-associated protein
	JEONG1266_17370	3	21	2.282550	hypothetical protein
	JEONG1266_17375	2	20	2.919394	cysteine--tRNA ligase
	JEONG1266_17380	0	20	3.480307	peptidylprolyl isomerase
	JEONG1266_17385	1	16	3.869177	UDP-2,3-diacylglucosamine diphosphatase
	JEONG1266_17390	1	16	5.012129	5-(carboxyamino)imidazole ribonucleotide mutase
	JEONG1266_17395	2	17	5.217036	5-(carboxyamino)imidazole ribonucleotide
	JEONG1266_17400	1	16	4.530245	carbamate kinase
	JEONG1266_17405	1	17	3.632346	hypothetical protein
	JEONG1266_17410	2	16	2.378949	hypothetical protein
	JEONG1266_17415	3	16	2.464612	acyl-CoA synthetase FdrA
	JEONG1266_17420	4	18	1.411815	ureidoglycolate dehydrogenase
	JEONG1266_17425	2	14	0.481598	allantoate amidohydrolase
	JEONG1266_17430	2	14	-0.457742	(S)-ureidoglycine aminohydrolase
	3289#JEONG1266_17265	HTHFIS#FIS bacterial regulatory protein HTH signature.	86	2e-21
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 85.7 bits (212), Expect = 2e-21
		 Identities = 35/117 (29%), Positives = 62/117 (52%)
		
		Query: 2   KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61
		            +L+ +D+      L + L+ AG+ V +  N    +     GD DL++ D+++PD N +D
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 62  IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
		           ++  ++ A   +P+L+++A  T    +K  E GA DYL KPF   EL+  +   L  
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		
	3290#JEONG1266_17270	PF06580#Sensor histidine kinase	30	0.018
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 30.2 bits (68), Expect = 0.018
		 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 34/183 (18%)
		
		Query: 306 EELTRMAKMVSDML-FLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDR-GVELQFV 363
		            +   M   +S+++ +  +  N + +       LADE+  V  + + LA  +    LQF 
		Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVS------LADELTVVDSYLQ-LASIQFEDRLQFE 243
		
		Query: 364 GDECQVAGDPLMLRRALSNLLSNALRY----TPPGEAIVVRCQTVDHLVQVIVENPGTPI 419
		                   D  +    +  L+ N +++     P G  I+++    +  V + VEN G+  
		Sbjct: 244 NQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303
		
		Query: 420 APEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVK---SIVVAHKGTVAVTSNARGTRFVI 476
		                                  E +G GL  V+    ++   +  + ++        ++
		Sbjct: 304 LKN------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
		
		Query: 477 VLP 479
		           ++P
		Sbjct: 346 LIP 348
		
		
	3302#JEONG1266_17335	HTHFIS#FIS bacterial regulatory protein HTH signature.	61	4e-13
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 60.6 bits (147), Expect = 4e-13
		 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
		
		Query: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLP 60
		           M   ++++ D    IR  +   L +      V  T +      ++     DL++ D+ +P
		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMP 58
		
		Query: 61  GTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI 120
		             + F  L RIK+ +  + VL +S+++    A +A + GA  ++ K  D  ++   +   
		Sbjct: 59  DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
		
		Query: 121 LS 122
		           L+
		Sbjct: 119 LA 120
		
		
	3305#JEONG1266_17350	PF00577#Outer membrane usher protein FimD	825	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  825 bits (2132), Expect = 0.0
		 Identities = 403/856 (47%), Positives = 572/856 (66%), Gaps = 20/856 (2%)
		
		Query: 20  ICYSSLAILPSFLSYAESYFNPAFLLENGTFVADLSRFERGNHQPAGVYRVDLWRNDEFI 79
		               + A   + LS AE YFNP FL ++   VADLSRFE G   P G YRVD++ N+ ++
		Sbjct: 31  FVACAFA-AQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYM 89
		
		Query: 80  GSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPD 139
		            ++D+ F     NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + D
		Sbjct: 90  ATRDVTF-----NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHD 144
		
		Query: 140 ATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGND 195
		           AT   D    RLN+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN 
		Sbjct: 145 ATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS 204
		
		Query: 196 SYFFSEL-SGINIGPWRLRNNGSWNYFRGNG--YHSEQWNNIGTWVQRAIIPLKSELVMG 252
		            Y +  L SG+NIG WRLR+N +W+Y   +       +W +I TW++R IIPL+S L +G
		Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264
		
		Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
		           DG T  DIFDG+ FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S 
		Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324
		
		Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
		           V PG F I D++   ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++R
		Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384
		
		Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
		           SGN+QQ  P FFQ T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A
		Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444
		
		Query: 433 RSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
		            S L DDS+H+G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY    
		Sbjct: 445 NSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY-NIE 503
		
		Query: 493 DYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 552
		             DG  + +P   +Y+NL ++++ +LQL ++Q L    +LY+SG+HQ YW TS+ D  +Q
		Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563
		
		Query: 553 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 612
		            G  +++  I+++LS+S  ++      ++++ LNV++PF+     R   ++    A AS+
		Sbjct: 564 AGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASY 621
		
		Query: 613 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG----DTSNNGYTGSATANWQAAYGTLG 668
		           + + + NG+ + LAGV GTLLE +NLSY V  G       N+G TG AT N++  YG   
		Sbjct: 622 SMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNAN 681
		
		Query: 669 VGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDW 728
		           +GY++  D   + + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDW
		Sbjct: 682 IGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDW 741
		
		Query: 729 RGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALIT 788
		           RGYAV+PYAT YR NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T
		Sbjct: 742 RGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMT 801
		
		Query: 789 VTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVL 848
		           +T   KP+PFG++V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y L
		Sbjct: 802 LTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQL 861
		
		Query: 849 PKQSLQQAVTVISAVC 864
		           P +S QQ +T +SA C
		Sbjct: 862 PPESQQQLLTQLSAEC 877
		
		
	3316#JEONG1266_17405	CARBMTKINASE#Bacterial carbamate kinase signature.	381	e-136
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score =  381 bits (980), Expect = e-136
		 Identities = 125/310 (40%), Positives = 174/310 (56%), Gaps = 16/310 (5%)
		
		Query: 2   KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARL-ARSYRLAIVHGNGPQVGLLAL 60
		           K +V+ALGGNAL QRG+  + E    N+      +A + AR Y + I HGNGPQVG L L
		Sbjct: 3   KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62
		
		Query: 61  QNLAWKE---VEPYPLDVLVAESQGMIGYMLAQSLSAQPQM----PPVTTVRTRIEVSPD 113
		              A +    +   P+DV  A SQG IGYM+ Q+L  + +       V T+ T+  V  +
		Sbjct: 63  HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122
		
		Query: 114 DPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRD-GKYLRRVVASPQPRKILDSEAIELL 172
		           DPAF  P K +GP Y  E  + L    GW +K D G+  RRVV SP P+  +++E I+ L
		Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182
		
		Query: 173 LKEGHVVICSGGGGVPVTDDG---AGSEAVIDKDLAAALLAEQINADGLVILTDADAVYE 229
		           ++ G +VI SGGGGVPV  +     G EAVIDKDLA   LAE++NAD  +ILTD +    
		Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242
		
		Query: 230 NWGMPQQRAIRHATPDELAPFAKAD----GSMGPKVTAVSGYVRSRGKPAWIGALSRIEE 285
		            +G  +++ +R    +EL  + +      GSMGPKV A   ++   G+ A I  L +  E
		Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVE 302
		
		Query: 286 TLAGEAGTCI 295
		            L G+ GT +
		Sbjct: 303 ALEGKTGTQV 312
		
		
JEONG1266_17480	JEONG1266_17510	Y	Y	N	JEONG1266_17405	JEONG1266_17600
	JEONG1266_17480	0	25	5.149850	tRNA 2-selenouridine(34) synthase MnmH
	JEONG1266_17485	-1	23	5.754882	hypothetical protein
	JEONG1266_17490	0	25	6.269654	hypothetical protein
	JEONG1266_17495	0	25	6.260378	RHS element protein
	JEONG1266_17500	0	25	6.376981	sugar ABC transporter permease
	JEONG1266_17505	-1	26	7.027001	ABC transporter ATP-binding protein
	JEONG1266_17510	1	19	3.645969	multifunctional acyl-CoA thioesterase I/protease
	3337#JEONG1266_17515	PF05272#Virulence-associated E family protein	29	0.014
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.014
		 Identities = 12/20 (60%), Positives = 13/20 (65%)
		
		Query: 41  LVGESGSGKSTLLAILAGLD 60
		           L G  G GKSTL+  L GLD
		Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
		
		
JEONG1266_17565	JEONG1266_17595	Y	Y	N	JEONG1266_17490	JEONG1266_17690
	JEONG1266_17565	4	31	8.277682	Cu(I)-responsive transcriptional regulator
	JEONG1266_17570	4	28	8.378434	hemolysin D
	JEONG1266_17575	4	27	8.062728	ATP-binding protein
	JEONG1266_17580	4	26	7.822324	hypothetical protein
	JEONG1266_17585	4	26	7.733608	transporter
	JEONG1266_17590	4	25	7.811749	amino acid permease
	JEONG1266_17595	1	15	4.731568	glutaminase
	3350#JEONG1266_17580	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	257	1e-83
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score =  257 bits (657), Expect = 1e-83
		 Identities = 103/434 (23%), Positives = 168/434 (38%), Gaps = 56/434 (12%)
		
		Query: 11  LTEPRLPRSALAV-RVTAVMLLCFLGWAWYFQLDEVTTGSGTVEPSGREQVVQSLEGGIL 69
		           L E  + R    V       L+     +   Q++ V T +G +  SGR + ++ +E  I+
		Sbjct: 48  LIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIV 107
		
		Query: 70  YHLDVKVGDIVEQGQPLAQLNRTKTESDVQEAMSRLYAALATSARLRAEVSNK------P 123
		             + VK G+ V +G  L +L     E+D  +  S L  A     R +    +        
		Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167
		
		Query: 124 LVFPDEL----------------------NKFPELIESETALYNTR--RDGLNKATTGLT 159
		           L  PDE                           +  + E  L   R  R  +        
		Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227
		
		Query: 160 QGISLVNRELAMTQPLVKQGAASSVEVLRLQRQANELEN--------------------- 198
		               +    L     L+ + A +   VL  + +  E  N                     
		Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287
		
		Query: 199 KLSDVRTQYYVQAREELAKANAEVETQRSVIRGREDSLTRLNFTAPVRGIVQDIDVTTVG 258
		           +   V   +  +  ++L +    +      +   E+        APV   VQ + V T G
		Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347
		
		Query: 259 GVIAPGGKLMTIVPLDEQLLIEAKISPRDVAFIHPGQKSLVKITAYDYSIYGGLPGEVAV 318
		           GV+     LM IVP D+ L + A +  +D+ FI+ GQ +++K+ A+ Y+ YG L G+V  
		Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407
		
		Query: 319 ISPDTVQDEVRRDVYYYRVYIRTFSNHLENKSKQQFPIFPGMVATVDIRTGKKSVLDYLL 378
		           I+ D ++D+  R    + V I    N L   +K   P+  GM  T +I+TG +SV+ YLL
		Sbjct: 408 INLDAIEDQ--RLGLVFNVIISIEENCLSTGNK-NIPLSSGMAVTAEIKTGMRSVISYLL 464
		
		Query: 379 KPF-NKAQEALRER 391
		            P      E+LRER
		Sbjct: 465 SPLEESVTESLRER 478
		
		
	3352#JEONG1266_17595	INTIMIN#Intimin signature.	37	5e-04
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 37.4 bits (86), Expect = 5e-04
		 Identities = 63/372 (16%), Positives = 115/372 (30%), Gaps = 44/372 (11%)
		
		Query: 707  QTVTVTLNGQTYQGVVQPDGTWSVTVPAANVGALADGNA--TVTASVNDVAGNPSSVSRV 764
		             T+TV  NGQ    V   D T      A    A ADG    T TA+V       ++V   
		Sbjct: 544  LTITVLSNGQVVDQVGVTDFT------ADKTSAKADGTEAITYTATVKKNGVAQANVPVS 597
		
		Query: 765  ALVDATPPVVTINPVATDNVINTPEHAQAQIISGTVTGAQAGDIVTVTLNNVDYTTVVDG 824
		              + +   V++ N   T+         ++      V  A+  ++ +    N +    VD 
		Sbjct: 598  FNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSAL--NANAVIFVDQ 655
		
		Query: 825  SGNWSLGVPASVVSGLADGSYPVSVSVTDKAGNTGSQSLTVTVNTAAPLIGINSIAGDDV 884
		            +      + A   + +A+G   ++ +V    G+    +  VT  T    +          
		Sbjct: 656  TKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSN-------- 707
		
		Query: 885  INASEKGADLQITGTSDQPVNTAITVTLNGQNYTTTTDASGNWSVTVPASAVTALGQANY 944
		                        T  +D      +T+T      +  +    + +V V A  V        
		Sbjct: 708  -----------STEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFF--TTL 754
		
		Query: 945  TVTAAVTSDIGNSATASHNVLVDSALPGVTINPVATDDIINAAEAGVAQTISGQVTGAED 1004
		            T+       +G          V   LP V +     +   +          +     + D
		Sbjct: 755  TIDDGNIEIVGTG--------VKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVD 806
		
		Query: 1005 GDTVTITL---GGNTYTATVGSN--LTWSVDVPAADIQALGNGDLTVNASVTNQNGNTGS 1059
		              +  +TL   G  T +     N   T+++  P + I    +  +T N +V       G 
		Sbjct: 807  ASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866
		
		Query: 1060 GTRDITIDANLP 1071
		                     N+ 
		Sbjct: 867  LPSSQNELENVF 878
		
		
		
		 Score = 35.0 bits (80), Expect = 0.002
		 Identities = 81/416 (19%), Positives = 139/416 (33%), Gaps = 61/416 (14%)
		
		Query: 841  ADGSYPVSVSVTDKAGN-TGSQSLTVTVNTAAPLIGINSIAGDDVINASEKGADLQITGT 899
		                Y V+    D+ GN + +  LT+TV  +   +       D   + +   AD    GT
		Sbjct: 521  GSNVYKVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKAD----GT 575
		
		Query: 900  SDQPVNTAITVTLNGQNYTTTTDASGNWSVTVPASAVTALGQANYTVTAAVTSDIGNSAT 959
		                   AIT       YT T   +G     VP S     G A  +  +A T     + +
		Sbjct: 576  ------EAIT-------YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT-----NGS 617
		
		Query: 960  ASHNVLVDSALPGVTINPVATDDIINAAEAGVAQTISGQVTGAEDGDTVTITLGGNTYTA 1019
		                V + S  PG  +    T ++ +A  A  A     Q           I     T  A
		Sbjct: 618  GKATVTLKSDKPGQVVVSAKTAEMTSALNAN-AVIFVDQTK----ASITEIKADKTTAVA 672
		
		Query: 1020 TVGSNLTWSVDVPAADIQALGNGDLTVNASVTNQNG----NTGSGTRDITIDANLPG--- 1072
		                 +T++V V   D + + N ++T   ++   +        +G   +T+ +  PG   
		Sbjct: 673  NGQDAITYTVKVMKGD-KPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL 731
		
		Query: 1073 --LRVDTVAGDDVVNIIEHGQALVVTGSS-----SGLAESTP----------LTVTINNV 1115
		               RV  VA D     +E    L +   +     +G+    P          L  +  N 
		Sbjct: 732  VSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG 791
		
		Query: 1116 EYTTAVQADGSWSVGVTAAQVSAWPAGTVNIAVSGESSAGNSVSITHPVTVDLTPAAITI 1175
		            +YT         SV  ++ QV+    GT  I+V    +   + +I        TP ++ +
		Sbjct: 792  KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA-------TPNSLIV 844
		
		Query: 1176 NTIATDDVINAAEKGADLTLSGTTTNVEPGQTVTVTFGGKNYTASVASDGSWTATV 1231
		              ++     N A            ++    + V   +G  N      S  +  + V
		Sbjct: 845  PNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWV 900
		
		
	3353#JEONG1266_17600	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	32	0.006
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 31.7 bits (72), Expect = 0.006
		 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 20/165 (12%)
		
		Query: 199 DELQAQTRIAGMRSTLEQYQAQMASAKAQLAVLTGVQPEAIAAP----PAELAEQPVSLK 254
		             L A+      +S+L Q + +    +     +   +   +  P       ++E+ V   
		Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL-- 185
		
		Query: 255 NIDYQSIPLVLAAENLRQSAQYGVEKTKAQYWPTLSIQGGKTRYQTSDRSYWDDQLQLNV 314
		               +   L+    +  Q+ +Y  E    +            R    +     ++ +L+ 
		Sbjct: 186 ----RLTSLIKEQFSTWQNQKYQKELNLDKK--RAERLTVLARINRYENLSRVEKSRLDD 239
		
		Query: 315 NAPLYQGGAVS--------AQVQQAEGQQKISASQVEQAKLDVLQ 351
		            + L    A++         +  +A  + ++  SQ+EQ + ++L 
		Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284
		
		
	3355#JEONG1266_17610	BLACTAMASEA#Beta-lactamase class A signature.	29	0.021
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 29.0 bits (65), Expect = 0.021
		 Identities = 11/43 (25%), Positives = 19/43 (44%)
		
		Query: 38 GQLAAVAIVTSDGNVYSAGDSDYRFALESISKVCTLALALEDV 80
		          G++  + +  + G   +A  +D RF + S  KV      L  V
		Sbjct: 38 GRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARV 80
		
		
JEONG1266_17655	JEONG1266_17685	Y	Y	N	JEONG1266_17575	JEONG1266_17780
	JEONG1266_17655	2	23	1.608920	adenylate kinase
	JEONG1266_17660	2	24	3.160669	molecular chaperone HtpG
	JEONG1266_17665	4	29	3.207007	recombination protein RecR
	JEONG1266_17670	3	24	3.332704	hypothetical protein
	JEONG1266_17675	3	17	4.671466	DNA polymerase III subunit gamma/tau
	JEONG1266_17680	4	16	4.203523	adenine phosphoribosyltransferase
	JEONG1266_17685	3	17	2.523780	hypothetical protein
	3367#JEONG1266_17670	FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signat...	32	0.009
		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin
		           signature.
		          Length = 405
		
		 Score = 31.6 bits (71), Expect = 0.009
		 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
		
		Query: 422 RMKEGQEK--IYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKP 479
		           R+  G++K    +I  D +A  +         + G  +  ++ + +  MMN + EF   P
		Sbjct: 99  RLFNGRDKDSTSFILGDEFAVLR-------FYRNGESISYIAYK-EAQMMNEIAEFYAAP 150
		
		Query: 480 FQSVSKV--DESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKD 525
		           F+    +   E+ E + D    SA +   ++   ID+ K +L     D
		Sbjct: 151 FKKTRAINEKEAFECIYDSRTRSAGKDIVSVKINIDKAKKILNLPECD 198
		
		
	3370#JEONG1266_17685	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	41	2e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 40.8 bits (95), Expect = 2e-05
		 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 31/251 (12%)
		
		Query: 404  PLPETTSQVLAARQQLQRVQGATKAKKSEPAA----ATRARPVNNAALERLASVTDRVQA 459
		            P  E  +Q +        +      +   P+        AR  + A +   A  T     
		Sbjct: 983  PEVEKRNQTVDTTN----ITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETT 1037
		
		Query: 460  RPVPSALEKAPAKKEAYRWKATTPVMQQKE--------VVATPKALKKA---LEHEKTPE 508
		              V    ++     E     AT    Q +E        V A  +  + A    E ++T  
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 509  LAAKLAA---------EAIERDAWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRS 558
		               K  A            E+     +V+    PK  +   +    E   +N   ++++ 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 559  SQRHLNNRGAQQKLAEALS-MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARES 617
		             Q   N     ++ A+  S  ++    E T V   N  V  P     A  +  +     +
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217
		
		Query: 618  IIADNNIQTLR 628
		               + + +++R
		Sbjct: 1218 KPKNRHRRSVR 1228
		
		
JEONG1266_17930	JEONG1266_17990	Y	Y	N	JEONG1266_17850	JEONG1266_18055
	JEONG1266_17930	0	13	-3.229021	geranyl transferase
	JEONG1266_17935	0	12	-2.567137	1-deoxy-D-xylulose-5-phosphate synthase
	JEONG1266_17940	0	13	-3.025847	oxidoreductase
	JEONG1266_17945	-1	14	-4.666374	hypothetical protein
	JEONG1266_17950	-2	15	-3.963862	phosphatidylglycerophosphatase A
	JEONG1266_17955	-1	14	2.424069	thiamine-phosphate kinase
	JEONG1266_17960	-2	14	1.592693	N utilization substance protein B
	JEONG1266_17965	0	21	0.569390	6,7-dimethyl-8-ribityllumazine synthase
	JEONG1266_17970	-1	18	0.197610	riboflavin biosynthesis protein RibD
	JEONG1266_17975	0	16	-0.277256	transcriptional regulator NrdR
	JEONG1266_17980	3	20	-2.931548	hypothetical protein
	JEONG1266_17985	4	24	-3.733464	nucleoside-specific channel-forming protein Tsx
	JEONG1266_17990	4	27	-2.207124	hypothetical protein
	3422#JEONG1266_17950	BONTOXILYSIN#Bontoxilysin signature.	31	0.020
		>BONTOXILYSIN#Bontoxilysin signature.
		          Length = 1196
		
		 Score = 30.6 bits (69), Expect = 0.020
		 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
		
		Query: 414 SRKKYNEFFKYIQAEAKQYFKDQYKLTKNDYLKKVPLTAQLIAKYKMDDQLDQLLVTREI 473
		           S K  N     I ++   YFK  Y    + +  +    +Q    +++     Q ++ +E 
		Sbjct: 642 SFKDLNNKLYEIYSKNIVYFKKIYFSFLDQWWTEY--YSQY---FELICMAKQSILAQE- 695
		
		Query: 474 QDEIKSKIQDKIDELSKNLFNT-----MTETIENNFDDIFRQQSENMSNYYEFVD 523
		              +K  +Q+K  +LSK          + ET E  F D+  +   +M+    F++
		Sbjct: 696 -SLVKQIVQNKFTDLSKASIPPDTLKLIRETTEKTFIDLSNESQISMNRVDNFLN 749
		
		
	3430#JEONG1266_17990	CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signa...	527	0.0
		>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx
		           signature.
		          Length = 294
		
		 Score =  527 bits (1358), Expect = 0.0
		 Identities = 257/294 (87%), Positives = 273/294 (92%)
		
		Query: 1   MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60
		           MKKTLLAAGAV+ALS++F   AAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE
		Sbjct: 1   MKKTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60
		
		Query: 61  YEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGP 120
		           YEAFAKKDWFDFYGY DAPVFFGGNS AKGIWN GSPLFMEIEPRFSIDKLTNTDLSFGP
		Sbjct: 61  YEAFAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGP 120
		
		Query: 121 FKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANEN 180
		           FKEWYFANNYIYDMGRN    QSTWYMGLGTDIDTGLPMSLS+NVYAKYQWQNYGA+NEN
		Sbjct: 121 FKEWYFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYGASNEN 180
		
		Query: 181 EWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSH 240
		           EWDGYRFK+KYFVP+TDLWGG LSYIGFTNFDWGSDLGDD+   +NG   RT+NSIASSH
		Sbjct: 181 EWDGYRFKVKYFVPLTDLWGGSLSYIGFTNFDWGSDLGDDNFYDLNGKHARTSNSIASSH 240
		
		Query: 241 ILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNF 294
		           ILALNY HWHYS+VARY+H+GGQW DDA+LNFG+G F+VRSTGWGGY VVGYNF
		Sbjct: 241 ILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294
		
		
JEONG1266_18070	JEONG1266_18105	Y	Y	N	JEONG1266_17990	JEONG1266_18190
	JEONG1266_18070	2	15	1.901706	phosphate regulon transcriptional regulatory
	JEONG1266_18075	2	14	1.340650	exonuclease subunit SbcD
	JEONG1266_18080	3	16	1.077355	exonuclease subunit SbcC
	JEONG1266_18085	1	19	-0.243494	MFS transporter AraJ
	JEONG1266_18090	-1	19	-0.926363	fructokinase
	JEONG1266_18095	-1	20	-3.586783	recombination-associated protein RdgC
	JEONG1266_18100	-3	27	-5.127890	hypothetical protein
	JEONG1266_18105	-2	26	-3.344361	hypothetical protein
	3446#JEONG1266_18070	HTHFIS#FIS bacterial regulatory protein HTH signature.	95	1e-24
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 94.9 bits (236), Expect = 1e-24
		 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
		
		Query: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
		            ILV +D+A IR ++   L + G+      +  +    +     DL++ D ++P  +   
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
		            +  +K+     D+PV++++A+      ++  E GA DY+ KPF   EL+  I   +   
		Sbjct: 65  LLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA-- 120
		
		Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEP 152
		                E       L  D      + G   
		Sbjct: 121 -----EPKRRPSKLEDDSQDGMPLVGRSA 144
		
		
	3447#JEONG1266_18075	FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signat...	30	0.022
		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin
		           signature.
		          Length = 405
		
		 Score = 29.7 bits (66), Expect = 0.022
		 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
		
		Query: 149 KQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFP 208
		           K+  ++  I ++Y   +     +   +    I     T       D +  + I    A  
		Sbjct: 135 KEAQMMNEIAEFYAAPFKKTRAINEKEAFECI-YDSRTRSA--GKD-IVSVKINIDKAKK 190
		
		Query: 209 AQNFPPADYI 218
		             N P  DYI
		Sbjct: 191 ILNLPECDYI 200
		
		
	3448#JEONG1266_18080	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	39	7e-05
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 39.4 bits (92), Expect = 7e-05
		 Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 14/199 (7%)
		
		Query: 671 QQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALH 730
		           + +    Q    +    Q R Q L+  +E     +     E      +  +V      + 
		Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192
		
		Query: 731 SQQQTLQQQDVLAAQSLQKAQAQFDTAL--------QASVFDDQQAFLAALMDEQTLTQL 782
		            Q  T Q Q      +L K +A+  T L         + V   +    ++L+ +Q +   
		Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA-- 250
		
		Query: 783 EQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQEL-AQTHQKLREN 841
		              K  +  Q  +    V +     +Q +Q   + L+     + + Q    +   KLR+ 
		Sbjct: 251 ---KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307
		
		Query: 842 TTSQGEIRQQLKQDADNRQ 860
		           T + G +  +L ++ + +Q
		Sbjct: 308 TDNIGLLTLELAKNEERQQ 326
		
		
		
		 Score = 39.4 bits (92), Expect = 7e-05
		 Identities = 25/204 (12%), Positives = 59/204 (28%), Gaps = 18/204 (8%)
		
		Query: 487 EARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEG 546
		           EA     ++   Q +  Q           ++E  +  E  +         +E + L    
		Sbjct: 133 EADTLKTQSSLLQARLEQ---TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT- 188
		
		Query: 547 AALRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQD 606
		           + ++ Q      Q  + E      R +   +  +         +     DD    L  Q 
		Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQA 248
		
		Query: 607 -------EHERQL-RLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLP 658
		                  E E +    +++    + Q+     +I+  +++ +   Q            L 
		Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF------KNEILD 302
		
		Query: 659 QEDEEESWLATRQQEAQSWQQRQN 682
		           +  +    +     E    ++RQ 
		Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQ 326
		
		
		
		 Score = 33.3 bits (76), Expect = 0.006
		 Identities = 16/150 (10%), Positives = 42/150 (28%), Gaps = 5/150 (3%)
		
		Query: 731 SQQQTLQQQDVLAAQSLQKAQAQFDTA----LQASVFDDQQAFLAALMDEQTLTQLEQLK 786
		           +     Q   + A     + Q    +     L      D+  F     +E+ L     +K
		Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS-EEEVLRLTSLIK 192
		
		Query: 787 QNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQG 846
		           +     + Q         +  A+                  +  L      L +   ++ 
		Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH 252
		
		Query: 847 EIRQQLKQDADNRQQQQTLLQQIAQMTQQV 876
		            + +Q  +  +   + +    Q+ Q+  ++
		Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEI 282
		
		
	3449#JEONG1266_18085	TCRTETA#Tetracycline resistance protein signature.	51	3e-09
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 51.4 bits (123), Expect = 3e-09
		 Identities = 74/356 (20%), Positives = 126/356 (35%), Gaps = 35/356 (9%)
		
		Query: 5   ILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGH---MISYYALGVVVGAPIIALF 61
		           + ++AL   G+G+    IM VL  L  ++  S     H   +++ YAL     AP++   
		Sbjct: 11  LSTVALDAVGIGL----IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66
		
		Query: 62  SSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIK 121
		           S R+  + +LL  +A   +  A+   +    +L IGR+V+G         GA +    I 
		Sbjct: 67  SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD--IT 124
		
		Query: 122 PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDI 181
		            G   A   G +S      ++  P+   L   FS    F   A  N     +  F +P+ 
		Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184
		
		Query: 182 RDEAKGKLREQ----------FHFLRSPAPWLI--FAATMFGNAGVFAWFSYVKPYMMFI 229
		               +  LR +             +   A  +   F   + G      W  +        
		Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------E 238
		
		Query: 230 SGFSETAMTFIMMLVGLGM---VLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCG 286
		             F   A T  + L   G+   +   M++G ++ R    R   +         ++L F  
		Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298
		
		Query: 287 GMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAF--NLGSAVG 340
		                  I   +   G+      LQ +L +     E  G   G +A   +L S VG
		Sbjct: 299 RGWMAFPIMVLLASGGIG--MPALQAMLSRQV-DEERQGQLQGSLAALTSLTSIVG 351
		
		
	3450#JEONG1266_18090	ACETATEKNASE#Acetate kinase family signature.	30	0.015
		>ACETATEKNASE#Acetate kinase family signature.
		          Length = 400
		
		 Score = 29.8 bits (67), Expect = 0.015
		 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
		
		Query: 187 FISGTGFATDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDP- 245
		               +G ++D+R L   A          +  D  A+LAL  +  R+ K++      +   
		Sbjct: 273 VYGISGISSDFRDLEDAAF---------KNGDKRAQLALNVFAYRVKKTIGSYAAAMGGV 323
		
		Query: 246 DVIVLGGGM 254
		           DVIV   G+
		Sbjct: 324 DVIVFTAGI 332
		
		
JEONG1266_18160	JEONG1266_18230	Y	Y	N	JEONG1266_18085	JEONG1266_18280
	JEONG1266_18160	-1	17	-3.551852	anti-RssB factor
	JEONG1266_18165	0	14	-1.555870	hypothetical protein
	JEONG1266_18170	0	14	-0.553230	D-alanine--D-alanine ligase A
	JEONG1266_18175	1	15	-1.027047	hypothetical protein
	JEONG1266_18180	0	15	0.360216	hypothetical protein
	JEONG1266_18185	0	13	-0.697905	hypothetical protein
	JEONG1266_18190	2	18	-2.465200	hypothetical protein
	JEONG1266_18195	3	18	-2.438868	microcin B17 transporter
	JEONG1266_18200	2	18	-2.110296	D-alanyl-D-alanine-
	JEONG1266_18205	1	16	-0.953446	transcriptional regulator
	JEONG1266_18210	2	17	-1.093587	delta-aminolevulinic acid dehydratase
	JEONG1266_18215	2	17	0.588465	taurine dioxygenase
	JEONG1266_18220	0	20	3.978759	taurine transporter subunit
	JEONG1266_18225	1	22	3.751309	taurine transporter ATP-binding subunit
	JEONG1266_18230	1	20	3.943564	taurine ABC transporter substrate-binding
	3466#JEONG1266_18170	SSPANPROTEIN#Salmonella invasion protein InvJ signature.	30	0.020
		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.
		          Length = 336
		
		 Score = 29.7 bits (66), Expect = 0.020
		 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
		
		Query: 63  DPAHIALRPSATS-LAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSL 116
		           D + + L+P+  + L+Q+ G  E   + AQ+ +P+ T   IFP   G  GED SL
		Sbjct: 213 DVSQLPLQPTTIADLSQLTGGDEKMPLAAQS-KPMMT---IFPTADGVKGEDSSL 263
		
		
	3474#JEONG1266_18220	BINARYTOXINB#Binary toxin B family signature.	30	0.015
		>BINARYTOXINB#Binary toxin B family signature.
		          Length = 764
		
		 Score = 30.0 bits (67), Expect = 0.015
		 Identities = 19/69 (27%), Positives = 30/69 (43%)
		
		Query: 254 DIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 313
		           +   EL +  +L +   QV G  A   F      +D      E L  I+   A +IF+  
		Sbjct: 466 NQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGK 525
		
		Query: 314 ALDLAEKKI 322
		            L+L E++I
		Sbjct: 526 DLNLVERRI 534
		
		
JEONG1266_18290	JEONG1266_18420	Y	Y	N	JEONG1266_18215	JEONG1266_18410
	JEONG1266_18290	1	13	3.500468	4-hydroxy-2-oxovalerate aldolase
	JEONG1266_18295	0	14	4.537757	acetaldehyde dehydrogenase (acetylating)
	JEONG1266_18300	-1	16	4.522432	2-keto-4-pentenoate hydratase
	JEONG1266_18305	-1	16	4.421690	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
	JEONG1266_18310	-1	15	3.545882	3-(2,3-dihydroxyphenyl)propionate dioxygenase
	JEONG1266_18315	-2	14	2.978188	3-(3-hydroxyphenyl)propionate hydroxylase
	JEONG1266_18320	-2	14	3.309293	transcriptional regulator
	JEONG1266_18325	-2	13	3.370499	hypothetical protein
	JEONG1266_18330	-3	12	1.506670	AraC family transcriptional regulator
	JEONG1266_18335	-2	11	0.284543	lac repressor
	JEONG1266_18340	-2	11	1.593202	beta-D-galactosidase
	JEONG1266_18345	-3	12	1.693206	galactoside permease
	JEONG1266_18350	-3	12	1.578104	galactoside O-acetyltransferase
	JEONG1266_18355	-1	16	0.376347	cyanate transporter
	JEONG1266_18360	-1	16	2.224654	cyanase
	JEONG1266_18365	0	15	3.574508	carbonic anhydrase
	JEONG1266_18370	-1	20	3.954547	transcriptional regulator CynR
	JEONG1266_18375	-1	20	4.300631	cytosine deaminase
	JEONG1266_18380	-1	21	4.241487	cytosine permease
	JEONG1266_18385	0	22	4.342429	propionate--CoA ligase
	JEONG1266_18390	0	23	4.605869	2-methylcitrate dehydratase
	JEONG1266_18395	1	23	4.293522	2-methylcitrate synthase
	JEONG1266_18400	0	18	2.861456	methylisocitrate lyase
	JEONG1266_18405	0	16	1.922130	propionate catabolism operon regulatory protein
	JEONG1266_18410	0	18	-1.400010	hypothetical protein
	JEONG1266_18415	-1	17	-1.849154	hypothetical protein
	JEONG1266_18420	-1	21	-3.635247	hypothetical protein
	3501#JEONG1266_18355	TCRTETA#Tetracycline resistance protein signature.	36	2e-04
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 36.0 bits (83), Expect = 2e-04
		 Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
		
		Query: 4   LKNTNFWMFGLFFFFYFFI-MGAYFPFFPIWLHDINHISK--SDTGIIFAAISLFSLLFQ 60
		           +K     +  L       + +G   P  P  L D+ H +   +  GI+ A  +L      
		Sbjct: 1   MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60
		
		Query: 61  PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA 120
		           P+ G LSD+ G R  LL     +      + I    P L + + +G IV GI       A
		Sbjct: 61  PVLGALSDRFGRRPVLL---VSLAGAAVDYAIMATAPFL-WVLYIGRIVAGIT-----GA 111
		
		Query: 121 GAPAVEAFIEKVSRRSNFEFGRARMFG----CVGWALCAS--IVGIMFTINNQFVFWLGS 174
		                 A+I  ++        RAR FG    C G+ + A   + G+M   +    F+  +
		Sbjct: 112 TGAVAGAYIADITDGDE----RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAA 167
		
		Query: 175 GCALILAILLFF 186
		               +  +   F
		Sbjct: 168 ALNGLNFLTGCF 179
		
		
	3502#JEONG1266_18360	BCTERIALGSPD#Bacterial general secretion pathway protein D signa...	28	0.023
		>BCTERIALGSPD#Bacterial general secretion pathway protein D
		           signature.
		          Length = 660
		
		 Score = 28.3 bits (63), Expect = 0.023
		 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 22/125 (17%)
		
		Query: 82  FYANFN----LTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137
		           F A+F        ++  +  +   V+I P+V  ++T     +++    + Y F +++  +
		Sbjct: 30  FSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTIT--VRSYDMLNEEQYYQFFLSV-LD 86
		
		Query: 138 VWIGSHVVINPGVTI---------------GDNSVIGAGSIVTKDIPPNVVAAGVPCRVI 182
		           V+  + + +N GV                  D +      +VT+ +P   VAA     ++
		Sbjct: 87  VYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLL 146
		
		Query: 183 REIND 187
		           R++ND
		Sbjct: 147 RQLND 151
		
		
	3511#JEONG1266_18405	PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase sign...	30	0.023
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase
		           signature.
		          Length = 572
		
		 Score = 29.8 bits (67), Expect = 0.023
		 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
		
		Query: 65  LIHGKLPTRDE-LAAYKTKLKALRGLPANVRTV 96
		           +   +LPT +E   AYK  ++ + G P  +RT+
		Sbjct: 303 MDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTL 335
		
		
	3513#JEONG1266_18415	HTHFIS#FIS bacterial regulatory protein HTH signature.	338	e-113
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score =  338 bits (868), Expect = e-113
		 Identities = 122/401 (30%), Positives = 200/401 (49%), Gaps = 54/401 (13%)
		
		Query: 164 DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSP 223
		             A +A   G + Y         ++ + +   +L       ++           ++G+S 
		Sbjct: 88  MTAIKASEKGAYDYLPKPFDL--TELIGIIGRALAEPKRRPSK-LEDDSQDGMPLVGRSA 144
		
		Query: 224 QMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 283
		            M+++ + +    ++   ++I GE+GTGKEL A+A+H      +  R+     PFVA+N 
		Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-----YGKRRNG---PFVAINM 196
		
		Query: 284 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVL 343
		            AI   L+E+ELFG+E+GAFTG++     G FE A GGTLFLDEIG+MP+  QTRLLRVL
		Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTR-STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVL 255
		
		Query: 344 EEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVA 403
		           ++ E T VGG  P+  DVR+++AT+ +L++ + QG FR DL+YRL+++ L+LPPLR+R  
		Sbjct: 256 QQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAE 315
		
		Query: 404 DILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLS 463
		           DI  L   F++              ++ L+     +  + WPGN+REL N++ RL     
		Sbjct: 316 DIPDLVRHFVQ-QAEKEGLDVKRFDQEALEL----MKAHPWPGNVRELENLVRRLTALYP 370
		
		Query: 464 VEP-TPDLTPQFLQLLLPELARESAKIPAPRLLTP------------------------- 497
		            +  T ++    L+  +P+   E A   +  L                            
		Sbjct: 371 QDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYD 430
		
		Query: 498 -----------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527
		                        AL    G++  AA+ LG++R T  ++++
		Sbjct: 431 RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIR 471
		
		
JEONG1266_18525	JEONG1266_18940	Y	Y	Y	JEONG1266_18455	JEONG1266_18655
	JEONG1266_18525	0	22	3.787778	hypothetical protein
	JEONG1266_18530	1	21	3.536583	hypothetical protein
	JEONG1266_18535	1	19	2.493280	LuxR family transcriptional regulator
	JEONG1266_18540	0	17	-0.539123	hypothetical protein
	JEONG1266_18545	4	34	-6.795795	adhesin
	JEONG1266_18550	4	33	-6.536323	autotransporter outer membrane beta-barrel
	JEONG1266_18555	3	32	-7.445123	hypothetical protein
	JEONG1266_18560	3	33	-7.814806	universal stress protein
	JEONG1266_18565	2	29	-6.782610	hypothetical protein
	JEONG1266_18570	1	24	-5.016052	iron-sulfur cluster-binding protein
	JEONG1266_18575	1	18	-3.031308	hypothetical protein
	JEONG1266_18580	0	19	-2.705830	AraC family transcriptional regulator
	JEONG1266_18585	-1	20	-2.452218	pyridine nucleotide-disulfide oxidoreductase
	JEONG1266_18590	0	21	-2.777909	hypothetical protein
	JEONG1266_18595	1	24	-3.674796	hypothetical protein
	JEONG1266_18600	1	27	-5.282868	aldo/keto reductase
	JEONG1266_18605	1	28	-6.439245	transcriptional regulator
	JEONG1266_18610	-2	21	-3.200743	intimin-like adhesin FdeC
	JEONG1266_18615	-1	20	-2.500037	hypothetical protein
	JEONG1266_18625	-1	22	-2.922636	transcriptional regulator
	JEONG1266_18630	-1	22	-2.666055	alpha/beta hydrolase
	JEONG1266_18635	-1	22	-2.767048	NADH:flavin oxidoreductase
	JEONG1266_18645	0	24	-3.528445	transposase
	JEONG1266_18650	0	20	-2.075953	isocitrate lyase
	JEONG1266_18655	0	19	-0.715371	transposase
	JEONG1266_18660	1	19	0.254086	50S ribosomal protein L31
	JEONG1266_18665	1	23	2.966528	50S ribosomal protein L36
	JEONG1266_18670	1	23	1.241273	helix-turn-helix transcriptional regulator
	JEONG1266_18675	3	23	-2.529757	fimbrial protein
	JEONG1266_18680	3	24	-2.271619	hypothetical protein
	JEONG1266_18685	1	20	0.600654	hypothetical protein
	JEONG1266_18690	1	20	0.710044	hypothetical protein
	JEONG1266_18695	2	20	0.983477	hypothetical protein
	JEONG1266_18700	1	21	2.001413	hypothetical protein
	JEONG1266_18705	0	19	1.255428	hypothetical protein
	JEONG1266_18710	0	18	1.238798	aldehyde dehydrogenase iron-sulfur subunit
	JEONG1266_18715	-1	17	1.700543	xanthine dehydrogenase
	JEONG1266_18720	-1	19	4.710464	xanthine dehydrogenase
	JEONG1266_18725	-1	20	5.713667	hypothetical protein
	JEONG1266_18730	-1	20	6.099343	MFS transporter
	JEONG1266_18735	-2	21	6.512587	hypothetical protein
	JEONG1266_18740	-1	21	6.289943	LysR family transcriptional regulator
	JEONG1266_18745	-1	18	4.816534	hypothetical protein
	JEONG1266_18750	-1	16	2.498681	oxidoreductase
	JEONG1266_18755	-2	16	0.673517	LysR family transcriptional regulator
	JEONG1266_18760	0	23	-4.647993	hypothetical protein
	JEONG1266_18765	1	26	-3.822199	DNA primase
	JEONG1266_18770	1	27	-4.319566	Clp protease ClpB
	JEONG1266_18775	1	26	-3.569129	hypothetical protein
	JEONG1266_18780	1	27	-3.282997	CI repressor
	JEONG1266_18785	1	27	-3.169856	hypothetical protein
	JEONG1266_18790	1	23	0.405919	hypothetical protein
	JEONG1266_18795	1	22	-0.540671	septation initiation protein
	JEONG1266_18800	2	22	-1.066740	phage polarity suppression protein
	JEONG1266_18805	1	22	-1.134225	hypothetical protein
	JEONG1266_18810	2	24	-5.307102	hypothetical protein
	JEONG1266_18815	2	29	-8.110935	hypothetical protein
	JEONG1266_18820	3	32	-9.720055	hypothetical protein
	JEONG1266_18825	4	43	-15.250246	AAA family ATPase
	JEONG1266_18830	6	53	-19.338360	hypothetical protein
	JEONG1266_18835	8	57	-21.290265	hypothetical protein
	JEONG1266_18840	10	59	-21.203898	hypothetical protein
	JEONG1266_18845	8	52	-16.081622	integrase
	JEONG1266_18850	7	50	-14.810750	hypothetical protein
	JEONG1266_18855	5	44	-11.409565	transposase
	JEONG1266_18865	2	26	-3.808825	transposase
	JEONG1266_18870	4	30	-5.001051	transposase
	JEONG1266_18875	3	30	-5.381802	AraC family transcriptional regulator
	JEONG1266_18880	2	28	-4.757050	hypothetical protein
	JEONG1266_18885	1	30	-5.308494	DNA-invertase
	JEONG1266_18890	2	35	-6.829099	phage replication protein
	JEONG1266_18895	3	36	-7.101436	Replication protein O
	JEONG1266_18900	1	31	-4.462930	hypothetical protein
	JEONG1266_18905	1	29	-3.435177	hypothetical protein
	JEONG1266_18910	1	27	-3.830304	repressor
	JEONG1266_18915	1	27	-3.510858	hypothetical protein
	JEONG1266_18920	2	28	-4.250906	antitermination protein
	JEONG1266_18925	4	28	-4.328206	integrase
	JEONG1266_18930	3	32	-5.483506	*glutamate-5-semialdehyde dehydrogenase
	JEONG1266_18935	4	34	-5.109219	glutamate 5-kinase
	JEONG1266_18940	3	36	-5.242931	porin
	3542#JEONG1266_18570	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	30	0.014
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 30.4 bits (68), Expect = 0.014
		 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
		
		Query: 252 ASAQGTGSATQNLNLSVADSTIYSDVLALSESENSAATTTNVNMNVARSYWEGNAYTFNS 311
		           A+     +A+    + +   T  +  +    +     TT  ++     S+   N      
		Sbjct: 761 ANITSNITASNKAQVHIGYKTGDTVCVRSDYTGYVTCTTDKLSDKALNSF---NPTNLRG 817
		
		Query: 312 GDKAGSNLDINLSDSSVWKGKVSGAGNASVSLQNESVWNVTGSSTVDAL 360
		                 + +  L  ++++ G +   GN+ V L   S W++TG+S V  L
		Sbjct: 818 NVNLTESANFVLGKANLF-GTIQSRGNSQVRLTENSHWHLTGNSDVHQL 865
		
		
	3543#JEONG1266_18575	PRTACTNFAMLY#Pertactin virulence factor family signature.	27	0.003
		>PRTACTNFAMLY#Pertactin virulence factor family signature.
		          Length = 910
		
		 Score = 27.3 bits (60), Expect = 0.003
		 Identities = 13/48 (27%), Positives = 22/48 (45%)
		
		Query: 15  IDGAAFRVGAGVQADITKNMGAYASLDYTKGDDIENPLQGVVGINVTW 62
		           + G    +G G+ A + +    YAS +Y+KG  +  P     G   +W
		Sbjct: 863 LRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
		
		
	3554#JEONG1266_18630	HTHTETR#TetR bacterial regulatory protein HTH signature.	28	0.026
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 28.4 bits (63), Expect = 0.026
		 Identities = 12/42 (28%), Positives = 19/42 (45%)
		
		Query: 3  RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRN 44
		          RQ IL   L           S+ +IA+ +G +R  I   F++
		Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD 54
		
		
	3555#JEONG1266_18635	INTIMIN#Intimin signature.	549	e-178
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score =  549 bits (1416), Expect = e-178
		 Identities = 226/818 (27%), Positives = 357/818 (43%), Gaps = 49/818 (5%)
		
		Query: 41  PVMAARAQHAVQPRLSMGNTTVTADNNVEKNVASFAANAGTFLSSQPDS-----DATRNF 95
		           P++AA        +L+  +  VT  N  +    ++AA     L SQ  S     D  ++ 
		Sbjct: 131 PLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSRSLNGDYAKDT 190
		
		Query: 96  ITGMATAKANQEIQEWLGKYGTARVKLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAI 155
		             G+A  +A+ ++Q WL  YGTA V L    +F    SSL+ L P YD+   + F Q   
		Sbjct: 191 ALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFD--GSSLDFLLPFYDSEKMLAFGQVGA 248
		
		Query: 156 HRTDDRTQSNIGFGWRHFSGNDWMAGVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGY 215
		              D R  +N+G G R F     M G N FID D S  +TR+G+G EYWRDY K S NGY
		Sbjct: 249 RYIDSRFTANLGAGQRFFLPE-NMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGY 307
		
		Query: 216 IRASGWKKSPDIEDYQERPANGWDIRAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQ 275
		            R SGW +S + +DY ERPANG+DIR  GYLP++P LGA LMYEQYYGD V LF  DK Q
		Sbjct: 308 FRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQ 367
		
		Query: 276 KDPHAISAEVTYTPVPLLTLSAGHKQGKSGENDTRFGLEVNYRIGEPLAKQLDTDSIRER 335
		            +P A +  V YTP+PL+T+   ++ G   END  + ++  Y+  +P ++Q++   + E 
		Sbjct: 368 SNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIEPQYVNEL 427
		
		Query: 336 RVLAGSRYDLVERNNNIVLEYRKSEVIRIALPERIEGKGGQTLSLGLVVSKATHGLKNVQ 395
		           R L+GSRYDLV+RNNNI+LEY+K +++ + +P  I G    T  + L+V K+ +GL  + 
		Sbjct: 428 RTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIV-KSKYGLDRIV 486
		
		Query: 396 WEAPSLLAEGGKITGQGSQ----WQVTLPAYRPGKDNYYAISAVAYDNKGNTSKRVQTEV 451
		           W+  +L ++GG+I   GSQ    +Q  LPAY  G  N Y ++A AYD  GN+S  V   +
		Sbjct: 487 WDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTI 546
		
		Query: 452 VITGAGMSADRTALTLDGQSRIQMLANGNEQKPLVLSLRDAEGQPVTGMKDQIKTELTFK 511
		            +   G   D+  +T     +    A+G E      +++            Q    ++F 
		Sbjct: 547 TVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNG-------VAQANVPVSFN 599
		
		Query: 512 PAGNIVTRSLKATKSQAKPTLGEFTETEAGVYQSVFTTGTQSGEATITVSVDGMSKTVTA 571
		                   S  +  +              G       +    G+  ++     M+  + A
		Sbjct: 600 IVSGTAVLSANSANTNGS-----------GKATVTLKSDK-PGQVVVSAKTAEMTSALNA 647
		
		Query: 572 ELRATMMDVANSTLSANEPSGDVVADGQQAYTLTLTAVDSEGNPVTGEASRLRFVPQDTN 631
		                +     S           VA+GQ A T T+  V     PV+ +          T 
		Sbjct: 648 NAVIFVDQTKASITEIKADKTTAVANGQDAITYTVK-VMKGDKPVSNQEVTF-----TTT 701
		
		Query: 632 GVTVGAIS--EIKPGVYSAAVSSTRAGNVVVRAFSEQYQLGTLQQTLKFVAGP-LDAAHS 688
		              +   +      G     ++ST  G  +V A      +      ++F     +D  + 
		Sbjct: 702 LGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNI 761
		
		Query: 689 SITLNPDKPVVGGTVTAIWTVKDAYDNPVTSLTPE---APSLAGAAAEGSTASGWTNNGD 745
		            I        V G +  +W      +   +    +     +    A+  +++   T    
		Sbjct: 762 EIVGTG----VKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEK 817
		
		Query: 746 GTWTAQITLGSTAGELEVMPKLNGQNAAANAAKVTVVADALSSNQSKVSVAEDHVKAGES 805
		           GT T  +           +   N      N +K     DA+++ ++            E+
		Sbjct: 818 GTTTISVISSDNQTATYTIATPNSL-IVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELEN 876
		
		Query: 806 TTVTLVAKDAHGNAISGLALSASLTGTASEGATVSSWT 843
		                 A + +    S   + + +  TA +  +  + T
		Sbjct: 877 VFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVAST 914
		
		
		
		 Score = 74.0 bits (181), Expect = 3e-15
		 Identities = 72/347 (20%), Positives = 114/347 (32%), Gaps = 46/347 (13%)
		
		Query: 905  KTTTELTFTVK----DAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTL 960
		                  T TVK         PV+       + SG A       SA +    G+G    TL
		Sbjct: 575  TEAITYTATVKKNGVAQANVPVSFN-----IVSGTAV-----LSANSANTNGSGKATVTL 624
		
		Query: 961  TLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQLANGQSANQITL 1020
		                    +         +A+    V+ V  D +KA I ++       +ANGQ A  IT 
		Sbjct: 625  KSDKPGQVVVSAKTAEMTSALNANAVIFV--DQTKASITEIKADKTTAVANGQDA--ITY 680
		
		Query: 1021 TVVDTY-GNPLQGQEVTLTLPQGVTSKTGNTVTTNAAGKADIELMSTVAGEHNISASVNG 1079
		            TV       P+  QEVT T   G  S +  T  T+  G A + L ST  G+  +SA V+ 
		Sbjct: 681  TVKVMKGDKPVSNQEVTFTTTLGKLSNS--TEKTDTNGYAKVTLTSTTPGKSLVSARVSD 738
		
		Query: 1080 AQ---KTVTVKFNADASTGQANLQVDAAAQKVANGKDAFTLTANVEDKNGN-PVPGSLVT 1135
		                 K   V+F    +    N+++      V  G      T  ++    N    G    
		Sbjct: 739  VAVDVKAPEVEFFTTLTIDDGNIEI------VGTGVKGKLPTVWLQYGQVNLKASGGNGK 792
		
		Query: 1136 FNLPRGVKPLTGDNVWVKANDEGKAELQVVSVTAGTYEITASAGNSQPSNTQTITFVADK 1195
		            +            N  + + D      QV     GT  I+  + ++Q       T+    
		Sbjct: 793  YT-------WRSANPAIASVDASSG--QVTLKEKGTTTISVISSDNQT-----ATYTIAT 838
		
		Query: 1196 ATATVSGIEVIGNYALADGNAKQTYKVTVTDANNNLLKDSEVTLTAS 1242
		              + +    +       D             ++ N L++      A+
		Sbjct: 839  PNSLIV-PNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAA 884
		
		
		
		 Score = 74.0 bits (181), Expect = 4e-15
		 Identities = 76/421 (18%), Positives = 140/421 (33%), Gaps = 45/421 (10%)
		
		Query: 976  NGQNAVAQPLVLNVAGDAS-KAEIRDMTVKVNNQLANGQSANQITLTVVDTYGNPLQGQE 1034
		            N  N V   + +   G    +  + D T    +  A+G  A   T TV    G       
		Sbjct: 537  NSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKN-GVAQANVP 595
		
		Query: 1035 VTLTLPQGVTSKTGNTVTTNAAGKADIELMSTVAGEHNISASVNGAQKTV---TVKFNAD 1091
		            V+  +  G    + N+  TN +GKA + L S   G+  +SA        +    V F   
		Sbjct: 596  VSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQ 655
		
		Query: 1092 ASTGQANLQVDAAAQKVANGKDAFTLTANVEDKNGNPVPGSLVTFNLPRGVKPLTGDNVW 1151
		                   ++ D     VANG+DA T T  V  K   PV    VTF    G    + +   
		Sbjct: 656  TKASITEIKADKTTA-VANGQDAITYTVKV-MKGDKPVSNQEVTFTTTLGKLSNSTE--- 710
		
		Query: 1152 VKANDEGKAELQVVSVTAGTYEITASAGNSQPSNTQTITFVADKATATVSGIEVIGNYAL 1211
		             K +  G A++ + S T G   ++A   +                T     IE++G    
		Sbjct: 711  -KTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGT--- 766
		
		Query: 1212 ADGNAKQTYKVTVTDANNNLLK---DSEVTLTASPANLVLTPNGTAKTNEQGQAIFTATT 1268
		              G   +   V +     NL     + + T  ++   +      + +   + +   T + 
		Sbjct: 767  --GVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISV 824
		
		Query: 1269 TVAAKYTLTAKVSQADGQESTKTAESKFVADDKNAVLTASSDVTSLVADGISTAKLEVTL 1328
		              +   T T                  +     N+++  +        D ++T K     
		Sbjct: 825  ISSDNQTAT------------------YTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866
		
		Query: 1329 MSANNPVGGNMWVDIKTPEGVTEKDYQFLPSKNDHFVSGKITRTFSTSKPGVYTFTFNAL 1388
		            + ++     N++             Y++  S     +   + +T   +K GV + T++ +
		Sbjct: 867  LPSSQNELENVFKAWGAANK-----YEYYKSSQT--IISWVQQTAQDAKSGVAS-TYDLV 918
		
		Query: 1389 T 1389
		             
		Sbjct: 919  K 919
		
		
		
		 Score = 51.2 bits (122), Expect = 3e-08
		 Identities = 71/405 (17%), Positives = 126/405 (31%), Gaps = 56/405 (13%)
		
		Query: 768  NGQNAAANAAKVTVVADALSSNQSKV---SVAEDHVKAGESTTVTLVA------KDAHGN 818
		            NG ++      +TV+++    +Q  V   +  +   KA  +  +T  A            
		Sbjct: 535  NGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANV 594
		
		Query: 819  AISGLALSASLTGTASEGATVSSWTEKGNGSYVATLTTGGKTGELRVMPLFNGQPAATEA 878
		             +S   +S    GTA   A  +S    G+G    TL +      +          A    
		Sbjct: 595  PVSFNIVS----GTAVLSA--NSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALN-- 646
		
		Query: 879  AQLTVIAGEMSSANSTLVADNKAPTVKTTTELTFTVKDAY-GNPVTGLKPDAPVFSGAAS 937
		            A   +   +  ++ + + AD           +T+TVK      PV+  +          +
		Sbjct: 647  ANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEV-------TFT 699
		
		Query: 938  TGSERPSAGNWTEKGNGVYVSTLTLGSAAGQLSVMPRVNGQN-AVAQPLVLNVAG---DA 993
		            T   + S        NG    TLT  +  G+  V  RV+     V  P V        D 
		Sbjct: 700  TTLGKLSNSTEKTDTNGYAKVTLT-STTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDD 758
		
		Query: 994  SKAEIRDMTVK---VNNQLANGQSANQI-------TLTVVDTYGNPLQGQEVTLTLPQGV 1043
		               EI    VK       L  GQ   +        T    +     +      +TL    
		Sbjct: 759  GNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTL---- 814
		
		Query: 1044 TSKTGNTVT---------TNAAGKADIELMSTVAGEHNISASVNGAQKTVTVKFNADAST 1094
		              K   T++         T      +  ++  ++     + +VN  +          +  
		Sbjct: 815  KEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKL--PSSQN 872
		
		Query: 1095 GQANLQVD-AAAQKVANGKDAFTLTANVEDKNGNPVPGSLVTFNL 1138
		               N+     AA K    K + T+ + V+    +   G   T++L
		Sbjct: 873  ELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDL 917
		
		
		
		 Score = 45.1 bits (106), Expect = 2e-06
		 Identities = 54/303 (17%), Positives = 92/303 (30%), Gaps = 63/303 (20%)
		
		Query: 1035 VTLTLPQGVTSKTGNTVTTNAAGKADIELMSTVAGEHNISASVNGAQKTVTVKFNADAST 1094
		            ++L +P  +     +T       K+   L   V  +  + +   G Q    ++ +   S 
		Sbjct: 454  LSLNIPHDINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQ--GGQ----IQHSGSQSA 507
		
		Query: 1095 GQANLQVDAAAQKVANGKDAFTLTANVEDKNGNPVPGSLVTFNLPRGVKPLTGDNVWVKA 1154
		                  + A  Q  +N    + +TA   D+NG                            
		Sbjct: 508  QDYQAILPAYVQGGSN---VYKVTARAYDRNG---------------------------- 536
		
		Query: 1155 NDEGKAELQVVSVTAGTYEITASAGNSQPSNTQTITFVADKATATVSGIEVIGNYALADG 1214
		            N      L +  ++ G         +          F ADK +            A ADG
		Sbjct: 537  NSSNNVLLTITVLSNGQVVDQVGVTD----------FTADKTS------------AKADG 574
		
		Query: 1215 NAKQTYKVTVTDANNNLLKDSEVTLTASPANLVLTPNGTAKTNEQGQAIFTATTTVAAKY 1274
		                TY  TV                 S     +    +A TN  G+A  T  +    + 
		Sbjct: 575  TEAITYTATVKKNGVAQANVPVSFNIVS--GTAVLSANSANTNGSGKATVTLKSDKPGQV 632
		
		Query: 1275 TLTAKVSQADGQESTKTAESKFVADDKNAVLTASSDVTSLVADGISTAKLEVTLMSANNP 1334
		             ++AK   A+   +       FV   K ++    +D T+ VA+G       V +M  + P
		Sbjct: 633  VVSAK--TAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKP 690
		
		Query: 1335 VGG 1337
		            V  
		Sbjct: 691  VSN 693
		
		
	3568#JEONG1266_18710	PF00577#Outer membrane usher protein FimD	63	4e-12
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score = 62.9 bits (153), Expect = 4e-12
		 Identities = 30/247 (12%), Positives = 72/247 (29%), Gaps = 23/247 (9%)
		
		Query: 487 TLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQNVYSGTFGSLGLRAGIQRYNNGDSN 546
		            L +     +  T  +S    + Y       + +Q   +  F  +          N    
		Sbjct: 530 QLTVTQQLGRTSTLYLSG-SHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQK 588
		
		Query: 547 ANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGT------------IRTV 594
		               + +AL++++P  +W  +    Q  +  A+ S     +                  +
		Sbjct: 589 -GRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNL 647
		
		Query: 595 GANLSRAISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTANGSVGWQGK 654
		             ++    +G    +   +G A   +   Y +  +   S +D         +G V     
		Sbjct: 648 SYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGY-SHSDDIKQLYYGVSGGVLAHAN 706
		
		Query: 655 NIAASGRTDGNAGVIFNTGLED---DGQISAKINGRIFPLNGKRNYLPLSPYGRYEVELQ 711
		            +      +    ++   G +D   + Q   + + R     G       + Y    V L 
		Sbjct: 707 GVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWR-----GYAVLPYATEYRENRVALD 761
		
		Query: 712 NSKNSLD 718
		            +  + +
		Sbjct: 762 TNTLADN 768
		
		
	3577#JEONG1266_18755	TCRTETB#Tetracycline resistance protein TetB signature.	33	0.003
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 32.5 bits (74), Expect = 0.003
		 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 3/155 (1%)
		
		Query: 19  LTPIARDLGVTEGLAGRGIAISGALAVLTSLTLSTLAGKMNRKFLLLGMTVLMAVSGLII 78
		           L  IA D                    + +     L+ ++  K LLL   ++     +I 
		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96
		
		Query: 79  ALATSYLMYMV-GRAMIGVAIGGFWSMSAATAIRLVPQHQVTRALAIFNAGNALATVVAA 137
		            +  S+   ++  R + G     F ++      R +P+    +A  +  +  A+   V  
		Sbjct: 97  FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156
		
		Query: 138 PLGSYLGATVGWRGAFLCLVPMAVVAFIWQCISLP 172
		            +G  +   + W  ++L L+PM  +  +   + L 
		Sbjct: 157 AIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLL 189
		
		
	3581#JEONG1266_18775	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	82	6e-21
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 82.4 bits (203), Expect = 6e-21
		 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
		
		Query: 3   KVILITGASSGIGEGIARELGMTGAKVLLGARRVERIEAIATEICRAGGIAKARELDVTD 62
		           K+  ITGA+ GIGE +AR L   GA +       E++E + + +      A+A   DV D
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68
		
		Query: 63  RQSMADFVQAALDSWGRVDVLINNAGVMPLSPLAAGKQDEWALTIDVNIKGVLWGIGAVL 122
		             ++ +         G +D+L+N AGV+    + +   +EW  T  VN  GV     +V 
		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128
		
		Query: 123 PVMEAQGSGQIINLGSIGALSVVPTGAVYCASKFAVR--AISDGLRQESSKIRVTCVNPG 180
		             M  + SG I+ +GS  A     + A Y +SK A        GL      IR   V+PG
		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
		
		Query: 181 VVESELASTI 190
		             E+++  ++
		Sbjct: 189 STETDMQWSL 198
		
		
	3601#JEONG1266_18875	BONTOXILYSIN#Bontoxilysin signature.	26	0.007
		>BONTOXILYSIN#Bontoxilysin signature.
		          Length = 1196
		
		 Score = 25.6 bits (56), Expect = 0.007
		 Identities = 5/29 (17%), Positives = 9/29 (31%)
		
		Query: 20  FIFIGYASRNTRWDKTETHKASQWLARLY 48
		            ++  Y+     + K       QW    Y
		Sbjct: 649 KLYEIYSKNIVYFKKIYFSFLDQWWTEYY 677
		
		
	3617#JEONG1266_18980	CARBMTKINASE#Bacterial carbamate kinase signature.	37	6e-05
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score = 37.5 bits (87), Expect = 6e-05
		 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
		
		Query: 119 DTLRALLDNNI---------VPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLT 169
		           +T++ L++  +         VPVI E+  +   E  V D D      A    AD  ++LT
		Sbjct: 177 ETIKKLVERGVIVIASGGGGVPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILT 235
		
		Query: 170 DQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAA-DVACRAG 228
		           D  G          + + +++V  +++  +            G M  K+ AA       G
		Sbjct: 236 DVNGAALY--YGTEKEQWLREV-KVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGG 289
		
		Query: 229 IDTIIAA 235
		              IIA 
		Sbjct: 290 ERAIIAH 296
		
		
		
		 Score = 30.2 bits (68), Expect = 0.013
		 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
		
		Query: 4  SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQ----LHAAGHRIVIVTSG-------- 51
		           + +V+ LG + L    ++ +   +++ VR+ A+    + A G+ +VI            
		Sbjct: 2  GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
		
		Query: 52 -AIAAGREHLGYPELP 66
		            + AG+   G P  P
		Sbjct: 62 LHMDAGQATYGIPAQP 77
		
		
	3618#JEONG1266_18985	ECOLIPORIN#E.coli/Salmonella-type porin signature.	550	0.0
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.
		          Length = 383
		
		 Score =  550 bits (1418), Expect = 0.0
		 Identities = 232/384 (60%), Positives = 268/384 (69%), Gaps = 34/384 (8%)
		
		Query: 1   MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFG 60
		           MK+  LALV+  ++A+ +  AAEIYNKDGNKLD+YGKV  +HY SD+ SKDGDQ+Y+R G
		Sbjct: 1   MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60
		
		Query: 61  FKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALY 120
		           FKGETQINDQLTGYG+WE     N  E + A   TRLAFAGLK+ D GSFDYGRN G LY
		Sbjct: 61  FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120
		
		Query: 121 DVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNEN-- 178
		           DVE WTDM PEFGGDS    DN+MT RA+G+ATYRNTDFFG++DGLN  LQYQGKNE+  
		Sbjct: 121 DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS 180
		
		Query: 179 --------------RDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSR-- 222
		                          D++  NGDGFG S TYD  G  F+   AYT SDRTNEQ       
		Sbjct: 181 ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDI-GMGFSAGAAYTTSDRTNEQVNAGGTI 239
		
		Query: 223 GTGKRAEAWATGLKYDANNIYLATFYSETRKMTP-------ITGGFANKTQNFEAVAQYQ 275
		             G +A+AW  GLKYDANNIYLAT YSETR MTP         GG ANKTQNFE  AQYQ
		Sbjct: 240 AGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTAQYQ 299
		
		Query: 276 FDFGLRPSLGYVLSKGKDIE----GIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDS 331
		           FDFGLRP++ +++SKGKD+        D+DLV Y DVGATYYFNKN S +VDYKIN LD 
		Sbjct: 300 FDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDD 359
		
		Query: 332 DNKL----NINNDDIVAVGMTYQF 351
		           D+       I+ DDIVA+GM YQF
		Sbjct: 360 DDPFYKDAGISTDDIVALGMVYQF 383
		
		
JEONG1266_19015	JEONG1266_19270	Y	Y	Y	JEONG1266_18925	JEONG1266_19145
	JEONG1266_19015	2	18	-1.555259	flagellar biosynthesis protein FlhA
	JEONG1266_19020	2	20	1.572376	endopeptidase
	JEONG1266_19025	1	19	1.313694	antitoxin DinJ
	JEONG1266_19030	1	21	2.028921	mRNA interferase YafQ
	JEONG1266_19035	1	23	2.436178	transpeptidase
	JEONG1266_19040	1	23	1.594797	class II glutamine amidotransferase
	JEONG1266_19045	0	20	0.981660	phosphoheptose isomerase
	JEONG1266_28225	2	18	-2.179321	acyl-CoA dehydrogenase
	JEONG1266_19055	2	16	-1.285538	C-lysozyme inhibitor
	JEONG1266_19060	-1	16	1.295358	amidohydrolase
	JEONG1266_19065	-2	16	1.309796	hypothetical protein
	JEONG1266_19070	-2	18	2.153988	dCTP deaminase
	JEONG1266_19075	-2	15	-0.367236	hypothetical protein
	JEONG1266_19080	-1	15	-1.567889	type IV secretion protein Rhs
	JEONG1266_19085	-2	16	-2.468109	hypothetical protein
	JEONG1266_19090	-1	25	-3.399867	hypothetical protein
	JEONG1266_19100	2	30	-7.512725	hypothetical protein
	JEONG1266_19105	1	30	-5.667133	hypothetical protein
	JEONG1266_19110	2	30	-5.752489	hypothetical protein
	JEONG1266_19115	3	29	-2.559109	type IV secretion protein Rhs
	JEONG1266_19120	6	35	-7.700169	type IV secretion protein Rhs
	JEONG1266_19130	4	29	3.436181	hypothetical protein
	JEONG1266_19135	4	30	3.667101	hypothetical protein
	JEONG1266_19140	4	32	4.788516	hypothetical protein
	JEONG1266_19145	4	30	4.526031	type VI secretion system-associated protein
	JEONG1266_19150	3	32	6.076992	hypothetical protein
	JEONG1266_19155	2	21	1.678874	type VI secretion protein
	JEONG1266_19160	-1	20	-0.821338	type VI secretion protein
	JEONG1266_19165	1	20	-0.662913	type VI secretion protein
	JEONG1266_19170	1	21	0.011600	type VI secretion protein
	JEONG1266_19175	1	20	1.220604	type VI secretion system protein ImpI
	JEONG1266_19180	1	19	2.270795	type VI secretion system-associated lipoprotein
	JEONG1266_19185	1	18	2.249664	type VI secretion system-associated protein
	JEONG1266_19190	2	19	3.055460	hypothetical protein
	JEONG1266_19195	1	18	3.012510	ClpV1 family T6SS ATPase
	JEONG1266_19200	1	22	5.162376	type VI secretion system-associated protein
	JEONG1266_19205	0	26	6.135482	type VI secretion system ImpA domain-containing
	JEONG1266_19210	0	25	6.107528	type VI secretion protein IcmF
	JEONG1266_19215	0	24	6.087765	hypothetical protein
	JEONG1266_19220	1	23	5.860574	type VI secretion system protein
	JEONG1266_19225	0	20	5.039659	peptidoglycan-binding protein
	JEONG1266_19230	0	16	2.381553	hypothetical protein
	JEONG1266_19235	0	15	0.281120	hypothetical protein
	JEONG1266_19240	0	16	-1.846020	hypothetical protein
	JEONG1266_19245	2	31	-9.243583	*DNA polymerase III subunit epsilon
	JEONG1266_19250	1	37	-12.159402	ribonuclease HI
	JEONG1266_19255	1	30	-9.663168	hypothetical protein
	JEONG1266_19260	-2	25	-7.040874	hydroxyacylglutathione hydrolase
	JEONG1266_19265	-2	26	-6.594948	murein transglycosylase D
	JEONG1266_19270	-2	20	-3.586339	SAM-dependent methyltransferase
	3633#JEONG1266_19065	ENTSNTHTASED#Enterobactin synthetase component D signature.	27	0.010
		>ENTSNTHTASED#Enterobactin synthetase component D signature.
		          Length = 234
		
		 Score = 26.5 bits (58), Expect = 0.010
		 Identities = 6/23 (26%), Positives = 10/23 (43%)
		
		Query: 39  AVYKDHPLQGSWKGYRDAHVEPD 61
		           +VYK    + +  G+  A V   
		Sbjct: 153 SVYKAFSDRVTLPGFNSAKVTSL 175
		
		
	3649#JEONG1266_19150	OUTRSURFACE#Outer surface protein signature.	38	1e-04
		>OUTRSURFACE#Outer surface protein signature.
		          Length = 273
		
		 Score = 38.4 bits (89), Expect = 1e-04
		 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 38/199 (19%)
		
		Query: 395 RVTITDSLNRR--EVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRL--KAQTDAAGRR 450
		           ++TI D L++   E+   +G+  + R V  +  D + T   ++E G L  K  T   G +
		Sbjct: 87  KLTIADDLSKTTFELFKEDGKTLVSRKVSSK--DKTSTDEMFNEKGELSAKTMTRENGTK 144
		
		Query: 451 TEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAETSR 510
		            EY+   + G   A       T+     + +   ++   +G  +         L+ E ++
		Sbjct: 145 LEYTEMKSDGTGKAKEVLKNFTLEGKVANDK--VTLEVKEGTVT---------LSKEIAK 193
		
		Query: 511 SGETTRYSYDDPASELPTGIQDATGSTKQMA-WSRYGQLLTFTDCSGYTTRYEYDRYGQQ 569
		           SGE T    D           + T +TK+   W      LT +  S  TT+         
		Sbjct: 194 SGEVTVALND----------TNTTQATKKTGAWDSKTSTLTISVNSKKTTQL-------- 235
		
		Query: 570 IAVHREEGISTYSSYNPRG 588
		             V  ++   T   Y+  G
		Sbjct: 236 --VFTKQDTITVQKYDSAG 252
		
		
		
		 Score = 33.0 bits (75), Expect = 0.008
		 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
		
		Query: 549 LTFTDCSGYTTRYEYDRYGQQIA---VHREEGISTYSSYNPRGQLVSQKDAQGRETRYEY 605
		           LT  D    TT   +   G+ +    V  ++  ST   +N +G+L ++   +   T+ EY
		Sbjct: 88  LTIADDLSKTTFELFKEDGKTLVSRKVSSKDKTSTDEMFNEKGELSAKTMTRENGTKLEY 147
		
		Query: 606 SAAGDLTAIVAPDGSRSEIQYDAWGKAVST-------------------TQGGLTRSMGY 646
		                           +E++ D  GKA                       +G +T S   
		Sbjct: 148 ----------------TEMKSDGTGKAKEVLKNFTLEGKVANDKVTLEVKEGTVTLSKEI 191
		
		Query: 647 DAAGRITV-LTNENGSQST 664
		             +G +TV L + N +Q+T
		Sbjct: 192 AKSGEVTVALNDTNTTQAT 210
		
		
	3677#JEONG1266_19295	BINARYTOXINB#Binary toxin B family signature.	34	4e-04
		>BINARYTOXINB#Binary toxin B family signature.
		          Length = 764
		
		 Score = 34.3 bits (78), Expect = 4e-04
		 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
		
		Query: 186 NDYYRKVKELRAKNQITLPVILKNERQINVFLRT----EDIDLINVINEETLLQQ 236
		            +   ++ EL A N  T+   +K   ++N+ +R      D + I V  +E+++++
		Sbjct: 589 QNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKE 643
		
		
JEONG1266_19560	JEONG1266_19655	Y	Y	N	JEONG1266_19485	JEONG1266_19690
	JEONG1266_19560	0	15	4.300407	iron-sulfur cluster insertion protein ErpA
	JEONG1266_19570	0	17	4.875177	chloride channel protein
	JEONG1266_19575	0	16	3.865623	glutamate-1-semialdehyde-2,1-aminomutase
	JEONG1266_19580	-2	17	3.912043	Fe3+-hydroxamate ABC transporter permease FhuB
	JEONG1266_19585	-2	17	3.835572	iron-hydroxamate transporter substrate-binding
	JEONG1266_19590	-1	13	3.132105	iron-hydroxamate transporter ATP-binding
	JEONG1266_19595	-1	13	3.209018	ferrichrome porin FhuA
	JEONG1266_19600	0	12	2.586980	penicillin-binding protein 1B
	JEONG1266_19605	-1	15	3.245509	hypothetical protein
	JEONG1266_19610	0	17	3.095984	ATP-dependent helicase HrpB
	JEONG1266_19615	0	14	3.461590	2'-5' RNA ligase
	JEONG1266_19620	-1	15	2.048600	sugar fermentation stimulation protein SfsA
	JEONG1266_19625	0	14	0.797042	RNA polymerase-binding protein DksA
	JEONG1266_19630	-1	15	0.620487	tRNA glutamyl-Q synthetase
	JEONG1266_19635	1	14	-0.646440	polynucleotide adenylyltransferase
	JEONG1266_19640	3	16	-1.278419	2-amino-4-hydroxy-6-
	JEONG1266_19645	4	19	-3.249631	fimbrial protein
	JEONG1266_19650	4	18	-3.516578	chaperone protein EcpD
	JEONG1266_19655	3	17	-4.119460	outer membrane usher protein
	3730#JEONG1266_19590	FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.	511	0.0
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.
		          Length = 296
		
		 Score =  511 bits (1316), Expect = 0.0
		 Identities = 294/296 (99%), Positives = 295/296 (99%)
		
		Query: 1   MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA 60
		           MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA
		Sbjct: 1   MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA 60
		
		Query: 61  DTINYRLWVSEPPLPESVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120
		           DTINYRLWVSEPPLP+SVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR
		Sbjct: 61  DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120
		
		Query: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMNPRFVKRGARPLLLT 180
		           GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSM PRFVKRGARPLLLT
		Sbjct: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT 180
		
		Query: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240
		           TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH
		Sbjct: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240
		
		Query: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296
		           DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
		Sbjct: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296
		
		
	3744#JEONG1266_19660	PF00577#Outer membrane usher protein FimD	742	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  742 bits (1916), Expect = 0.0
		 Identities = 262/889 (29%), Positives = 425/889 (47%), Gaps = 45/889 (5%)
		
		Query: 1   MYQFTHQKSRIPKKTLLA-----ACCALFYSSNGAAADTVEYDSSFLMGTGASTIDVKRY 55
		           +YQ   Q   I K  L            F +    ++  + ++  FL     +  D+ R+
		Sbjct: 8   LYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRF 67
		
		Query: 56  AQGNPTPPGLYNVRVFVNGQATSSLEIPFV-DIGENSAAACLTHKNLAQLHIKQPEQPVT 114
		             G   PPG Y V +++N    ++ ++ F     E     CLT   LA + +        
		Sbjct: 68  ENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGM 127
		
		Query: 115 LLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAYVLKSYGGYVDPSLWESGINA 174
		            L     ++ C+ L      A    D   Q L+LTIPQA++     GY+ P LW+ GINA
		Sbjct: 128 NLL---ADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA 184
		
		Query: 175 ATLAYTLNAYHTSSDND-NSDSVYGAFNSGINLGAWHFRARGNYNWTTDNGS-----DFD 228
		             L Y  +     +    NS   Y    SG+N+GAW  R    +++ + + S      + 
		Sbjct: 185 GLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQ 244
		
		Query: 229 FQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSDSRMLPSALASYAPTIRGV 288
		             + +L+RDI  +RS++ +GD YT G+ FD +N RG +L SD  MLP +   +AP I G+
		Sbjct: 245 HINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGI 304
		
		Query: 289 ANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVVTIEEADGSKRTFTQPFSS 348
		           A   A+VT+ Q+GY IY +TVPPG F I+DI  +G   +L VTI+EADGS + FT P+SS
		Sbjct: 305 ARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSS 364
		
		Query: 349 VVQMQRPGVGRWDFSAGKV-IDDSLRSEPNMGQASYYYGLNNLFTGYTGIQFTDNNYLAG 407
		           V  +QR G  R+  +AG+    ++ + +P   Q++  +GL   +T Y G Q  D  Y A 
		Sbjct: 365 VPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLAD-RYRAF 423
		
		Query: 408 LLGVGINT-SIGAFAVDVTHSRAEIPDDKTYQGQSYRVTWNKLFQDTGTSFNLAAYRYST 466
		             G+G N  ++GA +VD+T + + +PDD  + GQS R  +NK   ++GT+  L  YRYST
		Sbjct: 424 NFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYST 483
		
		Query: 467 QDYLGLHDALVLIDDAKHL--------SADEDKNTMQTYSRMKNQFTVSINQPLNIAYED 518
		             Y    D      +  ++           +  +        + +  +++ Q L      
		Sbjct: 484 SGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLG----R 539
		
		Query: 519 YGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNLQRSWNE-DGEKDDAMYVSVS 577
		             +L++SGS   YW  +N   ++  G + +    +++++   + N     +D  + ++V+
		Sbjct: 540 TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVN 599
		
		Query: 578 VPIENILGGKRKSS-GFRNLNTQLNTDFDGSHQLNVNSSGNT-ENNLVNYSVNAGYSLDK 635
		           +P  + L    KS     + +  ++ D +G         G   E+N ++YSV  GY+   
		Sbjct: 600 IPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGG 659
		
		Query: 636 NAGDLASVGGYLNYESGLGGISASASATSDNSQQYSISTDGGFVLHSGGLTFTNNSFSSN 695
		           +    ++    LNY  G G  +   S  SD+ +Q      GG + H+ G+T        N
		Sbjct: 660 DGNSGSTGYATLNYRGGYGNANIGYSH-SDDIKQLYYGVSGGVLAHANGVTLGQP---LN 715
		
		Query: 696 DTLVLINALGAKGARINNSNN-EIDRWGYAVTSSVSPYRENRVGLNIETLENDVELKSTS 754
		           DT+VL+ A GAK A++ N      D  GYAV    + YRENRV L+  TL ++V+L +  
		Sbjct: 716 DTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAV 775
		
		Query: 755 ATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEVYQGE-VMIGSMGQGGQAFV 813
		           A  VP  G++V   F+   G   ++ +T  N K +PF A V        G +   GQ ++
		Sbjct: 776 ANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYL 834
		
		Query: 814 RGINDSGELIVRWYENNQTIDCKLHYQFPAQPQTQGSTNTLLLNNLTCQ 862
		            G+  +G++ V+W E      C  +YQ P + Q Q     L   +  C+
		Sbjct: 835 SGMPLAGKVQVKWGEEENAH-CVANYQLPPESQQQL----LTQLSAECR 878
		
		
JEONG1266_20000	JEONG1266_20045	Y	Y	N	JEONG1266_19925	JEONG1266_20120
	JEONG1266_20000	2	17	2.905591	3-isopropylmalate dehydratase small subunit
	JEONG1266_20005	0	16	3.451223	inhibitor of glucose transporter
	JEONG1266_20010	0	16	3.548130	transcriptional regulator SgrR
	JEONG1266_20015	-1	16	3.152626	type III effector
	JEONG1266_20020	0	17	4.764965	thiamine ABC transporter substrate binding
	JEONG1266_20025	-1	19	5.070388	thiamine/thiamine pyrophosphate ABC transporter
	JEONG1266_20030	-2	17	4.266852	thiamine ABC transporter ATP-binding protein
	JEONG1266_20035	-2	17	4.099467	hypothetical protein
	JEONG1266_20040	-3	20	4.015319	DNA-binding transcriptional regulator AraC
	JEONG1266_20045	-2	20	4.154135	ribulokinase
	3817#JEONG1266_20025	PF06580#Sensor histidine kinase	32	0.005
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 32.1 bits (73), Expect = 0.005
		 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
		
		Query: 4   RRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWSAVWQDS-YLWHVVRFSFWQ 62
		           R      GWL   +    L V  A      +W+ A     +++W+   ++          
		Sbjct: 60  RSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVAN----TSIWRLLAFINTKPVAFTLP 115
		
		Query: 63  AFLSALLSVVPAIFLARALY 82
		             LS + +VV   F+   LY
		Sbjct: 116 LALSIIFNVVVVTFMWSLLY 135
		
		
	3820#JEONG1266_20040	PF05616#Neisseria meningitidis TspB protein	29	0.022
		>PF05616#Neisseria meningitidis TspB protein
		          Length = 501
		
		 Score = 28.9 bits (64), Expect = 0.022
		 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
		
		Query: 82  YGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQ-IINA 140
		           Y R PE +E     +    R YW +  N P ++    +F+     + +F    G  ++  
		Sbjct: 158 YSRFPEVKELMESQMERLARPYWEKLRNRPDMY----YFKNYNFKRCYFGLNGGDCLVAK 213
		
		Query: 141 G-----------QGEGRYSELLAINLLEQLLLRRMEA-----INESLHPPMDNRVREA 182
		           G           QG  +Y E +    LE++L  +++A     I  + +P    +V  A
		Sbjct: 214 GDDGRTFISFSLQGNSKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVA 271
		
		
JEONG1266_20225	JEONG1266_20285	Y	Y	N	JEONG1266_20150	JEONG1266_20345
	JEONG1266_20225	-1	21	3.546134	ribonucleoside hydrolase RihC
	JEONG1266_20230	-2	21	3.590522	4-hydroxy-3-methylbut-2-enyl diphosphate
	JEONG1266_20235	-1	22	3.238272	peptidylprolyl isomerase
	JEONG1266_20240	-1	23	2.741724	signal peptidase II
	JEONG1266_20245	-2	14	-2.407656	isoleucine--tRNA ligase
	JEONG1266_20250	-2	15	-3.602937	riboflavin biosynthesis protein RibF
	JEONG1266_20255	-1	32	-10.919359	hypothetical protein
	JEONG1266_20260	1	38	-12.939404	30S ribosomal protein S20
	JEONG1266_20265	1	39	-13.428395	type III effector
	JEONG1266_20270	2	40	-13.702784	fimbrial protein
	JEONG1266_20275	1	35	-10.505381	molecular chaperone
	JEONG1266_20280	1	28	-8.272520	hypothetical protein
	JEONG1266_20285	1	26	-7.148280	fimbrial family protein
	3859#JEONG1266_20240	INFPOTNTIATR#Macrophage infectivity potentiator signature.	31	0.002
		>INFPOTNTIATR#Macrophage infectivity potentiator signature.
		          Length = 233
		
		 Score = 30.7 bits (69), Expect = 0.002
		 Identities = 14/32 (43%), Positives = 19/32 (59%)
		
		Query: 8   NSAVLVHFTLKLDDGTTAESTRNNGKPALFRL 39
		           +  V V +T  L DGT  +ST   GKPA F++
		Sbjct: 144 SDTVTVEYTGTLIDGTVFDSTEKAGKPATFQV 175
		
		
JEONG1266_20430	JEONG1266_20485	Y	Y	N	JEONG1266_20355	JEONG1266_20550
	JEONG1266_20430	-1	16	3.271806	inosine/xanthosine triphosphatase
	JEONG1266_20435	-1	16	3.360441	Trp operon repressor
	JEONG1266_20440	-1	18	2.401457	murein transglycosylase
	JEONG1266_20445	-1	18	3.039416	energy-dependent translational throttle protein
	JEONG1266_20450	-2	19	3.334364	transcriptional regulator
	JEONG1266_20455	-1	21	3.482140	trifunctional nicotinamide-nucleotide
	JEONG1266_20460	-2	21	4.019604	DNA repair protein RadA
	JEONG1266_20465	-2	20	3.559882	phosphoserine phosphatase SerB
	JEONG1266_20470	-2	21	4.212103	lipoate--protein ligase
	JEONG1266_20475	-2	26	3.335755	transcriptional regulator
	JEONG1266_20480	1	26	3.158448	purine-nucleoside phosphorylase
	JEONG1266_20485	1	30	3.018409	phosphopentomutase
	3903#JEONG1266_20465	LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signat...	36	7e-05
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein
		           signature.
		          Length = 166
		
		 Score = 36.3 bits (84), Expect = 7e-05
		 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 35/152 (23%)
		
		Query: 71  GKFYPLHTGHIYLIQRACSQVDELHIIMGFDDTRDRALFEDSAMSQQPTVPDRLRWLLQT 130
		           G F P+  GH+ +I+R C   D++++          A+  +       +V +RL  + + 
		Sbjct: 7   GSFDPITFGHLDIIERGCRLFDQVYV----------AVLRNPNKQPMFSVQERLEQIAKA 56
		
		Query: 131 FKYQKNIRIHAFNEEGMEPYPHGWDVWSNGIKKFMAEKGI---------QPDLIYTSEEA 181
		             +  N ++               D +      +  ++             D     + A
		Sbjct: 57  IAHLPNAQV---------------DSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMA 101
		
		Query: 182 DAPQYMEHLGIETVLVDPKRTFMSISGAQIRE 213
		           +  + +    +ETV +     +  +S + ++E
		Sbjct: 102 NTNKTLAS-DLETVFLTTSTEYSFLSSSLVKE 132
		
		
	3905#JEONG1266_20475	FLGMRINGFLIF#Flagellar M-ring protein signature.	30	0.022
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 29.5 bits (66), Expect = 0.022
		 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
		
		Query: 123 QIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLK-GADANILQQVRENLP 181
		           Q+    E AK A     V + TE A+   L     L+ R A  + GA+  + Q++RE   
		Sbjct: 482 QLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEV-MSQRIREMSD 540
		
		Query: 182 LMPGLTQLVLK 192
		             P +  LV++
		Sbjct: 541 NDPRVVALVIR 551
		
		
JEONG1266_20655	JEONG1266_20920	Y	Y	Y	JEONG1266_28230	JEONG1266_20785
	JEONG1266_20655	-2	17	-3.832758	GTPase
	JEONG1266_20660	-2	16	-3.538500	hypothetical protein
	JEONG1266_20665	-2	15	-3.019099	hypothetical protein
	JEONG1266_20670	-1	14	-5.056728	DEAD/DEAH box helicase
	JEONG1266_20675	0	15	-6.167052	restriction endonuclease subunit M
	JEONG1266_20680	0	19	-6.836378	restriction endonuclease subunit S
	JEONG1266_20685	-1	14	-4.461247	hypothetical protein
	JEONG1266_20690	-1	13	-4.419064	hypothetical protein
	JEONG1266_20695	-1	20	-5.385380	hypothetical protein
	JEONG1266_20700	-2	22	-4.046192	GntR family transcriptional regulator
	JEONG1266_20705	-1	22	-1.217185	multidrug transporter
	JEONG1266_20715	0	18	0.105609	hypothetical protein
	JEONG1266_20720	1	17	1.568568	hypothetical protein
	JEONG1266_20725	1	16	1.904854	hypothetical protein
	JEONG1266_20730	1	17	1.485217	hypothetical protein
	JEONG1266_20735	0	18	-3.457897	type III effector
	JEONG1266_20740	0	18	-5.198295	hypothetical protein
	JEONG1266_20745	-2	19	-4.916239	hypothetical protein
	JEONG1266_20750	-2	19	-4.456966	hypothetical protein
	JEONG1266_20755	-2	20	-5.042769	phosphotransferase
	JEONG1266_20760	-1	20	-5.135496	RNA 2'-phosphotransferase
	JEONG1266_20765	-2	16	-1.871469	hypothetical protein
	JEONG1266_20770	-2	16	-1.065826	hypothetical protein
	JEONG1266_20775	-1	13	-0.793073	beta-aspartyl-peptidase
	JEONG1266_20785	-1	17	1.310834	DNA replication protein
	JEONG1266_20790	-1	16	1.389376	hypothetical protein
	JEONG1266_20795	-1	18	0.310944	hypothetical protein
	JEONG1266_20800	-2	19	-2.709128	hypothetical protein
	JEONG1266_20805	2	18	-4.191555	transcriptional regulator
	JEONG1266_20810	1	25	-5.837120	DUF4759 domain-containing protein
	JEONG1266_20815	-2	15	-1.170226	fructuronate reductase
	JEONG1266_20820	-3	20	-0.052083	mannonate dehydratase
	JEONG1266_20825	-3	20	0.561037	hypothetical protein
	JEONG1266_20830	0	26	2.850163	gluconate permease
	JEONG1266_20835	-2	23	2.208271	fimbrial protein
	JEONG1266_20840	-1	20	2.367625	fimbrial protein
	JEONG1266_20845	-1	15	0.668789	fimbrial protein
	JEONG1266_20850	2	14	-1.393552	fimbrial protein
	JEONG1266_20855	1	15	-1.967576	molecular chaperone FimC
	JEONG1266_20860	2	23	-2.739360	fimbrial protein
	JEONG1266_20865	0	23	-2.634744	type-1 fimbrial protein subunit A
	JEONG1266_20870	0	25	-3.511880	tyrosine recombinase
	JEONG1266_20875	1	26	-3.795921	integrase
	JEONG1266_20880	0	29	-5.205495	hypothetical protein
	JEONG1266_20885	-1	31	-6.046425	porin
	JEONG1266_20890	-1	33	-7.526889	N-acetylneuraminic acid mutarotase
	JEONG1266_20895	2	32	-9.765391	9-O-acetyl-N-acetylneuraminic acid deacetylase
	JEONG1266_20900	1	31	-8.494221	hypothetical protein
	JEONG1266_20905	1	31	-7.786847	hypothetical protein
	JEONG1266_20910	0	31	-7.300289	hypothetical protein
	JEONG1266_20915	0	29	-4.962786	transposase
	JEONG1266_20920	0	27	-3.788126	DNA helicase
	3953#JEONG1266_20735	TCRTETB#Tetracycline resistance protein TetB signature.	52	3e-09
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 51.8 bits (124), Expect = 3e-09
		 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 5/189 (2%)
		
		Query: 7   RHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFNADVSLAPAAVSLYLAGGMALQW 66
		           RH   L +   L  +     +  ++  P I N      A  +    A  L  + G A+  
		Sbjct: 11  RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAV-- 68
		
		Query: 67  LLGPLSDRIGRKPVLITGALIFTLACAATMFTTSMTQFLI-ARAIQGTSICFIATVGYVT 125
		             G LSD++G K +L+ G +I            S    LI AR IQG        +  V 
		Sbjct: 69  -YGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVV 127
		
		Query: 126 VQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAALMHFVHWKVLFAIIAVMGFISFVGLL 185
		           V     +    K   +I SIV +   +GP  G  + H++HW  L  +I ++  I+   L+
		Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL-LIPMITIITVPFLM 186
		
		Query: 186 LAMPETVKR 194
		             + + V+ 
		Sbjct: 187 KLLKKEVRI 195
		
		
	3960#JEONG1266_20770	TCRTETA#Tetracycline resistance protein signature.	29	0.040
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 28.6 bits (64), Expect = 0.040
		 Identities = 64/316 (20%), Positives = 113/316 (35%), Gaps = 24/316 (7%)
		
		Query: 82  RPFLLASALATGLLILAMAWLPPFLLVFIIRFLAGV-----ASAGMLIFGSTLIMQHTRH 136
		           RP LL S     +    MA  P   +++I R +AG+     A AG  I   T   +  RH
		Sbjct: 73  RPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARH 132
		
		Query: 137 PFVLAALFSGVGVGIALGNEYVLAGLHFALSSQTLWQGAGALSAIILLALALLIP-SNKH 195
		              ++A F   G G+  G   VL GL    S    +  A AL+ +  L    L+P S+K 
		Sbjct: 133 FGFMSACF---GFGMVAGP--VLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187
		
		Query: 196 VIPPAPLAKIAQQPMSWW---------LLAILYGLAGFGYIIVATYLPLMAKDAGQPVLT 246
		              P     +       W         L+A+ + +   G +  A ++ +  +D      T
		Sbjct: 188 ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV-IFGEDRFHWDAT 246
		
		Query: 247 AHLWTLVGLSIVPGCFGWLWA---AKRWGALPCLTANLLVQAICVLLTLASSSPLLLIIS 303
		               +L    I+      +     A R G    L   ++      +L   ++   +    
		Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPI 306
		
		Query: 304 SIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLGNGTSALA 363
		            +      +G  +L   ++RQ+       L G +  +  +  I+GP L + +   +    
		Sbjct: 307 MVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTW 366
		
		Query: 364 SATLCGAAALFIAALI 379
		           +     A A      +
		Sbjct: 367 NGWAWIAGAALYLLCL 382
		
		
	3961#JEONG1266_20775	INTIMIN#Intimin signature.	577	0.0
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score =  577 bits (1487), Expect = 0.0
		 Identities = 176/592 (29%), Positives = 272/592 (45%), Gaps = 33/592 (5%)
		
		Query: 136 NGENTLENQIASTSQRVGTLLSQDMNSEQASGMARGWASSEASGAMTDWLNNFGTARISL 195
		              N    Q AS   ++    S+ +N + A   A G A ++AS  +  WL ++GTA ++L
		Sbjct: 161 KALNYAAQQAASLGSQLQ---SRSLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNL 217
		
		Query: 196 GVDEDFSLKNSQFDFLHPWYDTPDYLLFSQHTLHRTDDRTQINTGLGWRHFTSSWMSGIN 255
		               +F    S  DFL P+YD+   L F Q      D R   N G G R F    M G N
		Sbjct: 218 QSGNNFD--GSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYN 275
		
		Query: 256 LFFDHDLSRYHSRAGLGAEYWRDYLKLSSNAYIGLTGWRSAPELDNDFEARPANGWDLRA 315
		           +F D D S  ++R G+G EYWRDY K S N Y  ++GW  +     D++ RPANG+D+R 
		Sbjct: 276 VFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYN-KKDYDERPANGFDIRF 334
		
		Query: 316 EGWLPAWPQLGGKLVYEQYYGDEVALFDKNDRQSNPHAITAGLNYTPFPLLTLSAEQRQG 375
		            G+LP++P LG KL+YEQYYGD VALF+ +  QSNP A T G+NYTP PL+T+  + R G
		Sbjct: 335 NGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHG 394
		
		Query: 376 KQGENDTRFAVDLTWQPSSSMQKQLNPDEVAGRRSLAGSRYDLIDRNNNIVLEYRKKELI 435
		              END  +++   +Q      +Q+ P  V   R+L+GSRYDL+ RNNNI+LEY+K++++
		Sbjct: 395 TGNENDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDIL 454
		
		Query: 436 RLSLLDPVKGKSGEIKPLVSSLQTKYALKGYNIEAAALEAAGGKVSTSG----KDITVTL 491
		            L++   + G     + +   +++KY L     + +AL + GG++  SG    +D    L
		Sbjct: 455 SLNIPHDINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAIL 514
		
		Query: 492 PGYRFTNTPETDNTWSIDVTAEDVKGNLSRHEQ-SMVVIQAPTLSQKDSLLSVNPLTVAA 550
		           P Y         N + +   A D  GN S +   ++ V+    +  +  +        +A
		Sbjct: 515 PAY----VQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSA 570
		
		Query: 551 DKKSTTTLTVTAHDSD------GTPVPGLALQTRSEGVQDITLSDWTDNGDGSYTQILTA 604
		               T  +T TA            PV    +     G   ++ +    NG G  T  L +
		Sbjct: 571 KADGTEAITYTATVKKNGVAQANVPVSFNIVS----GTAVLSANSANTNGSGKATVTLKS 626
		
		Query: 605 GTTSGSVTLTPQINGESAVKESIVVNIVPVVSSRDHSSITIDNVSYYAGDDIKVRVELKD 664
		                 V         SA+  + V  I    +    + I  D  +  A     +   +K 
		Sbjct: 627 DKPGQVVVSAKTAEMTSALNANAV--IFVDQTKASITEIKADKTTAVANGQDAITYTVKV 684
		
		Query: 665 DSN-QPVAYQKEELVKAVTVENSKPGATIVWHEEQPGVYAANYPAYKQGTAL 715
		               +PV+ Q+      +     K   +     +  G       +   G +L
		Sbjct: 685 MKGDKPVSNQEVTFTTTL----GKLSNSTE-KTDTNGYAKVTLTSTTPGKSL 731
		
		
		
		 Score = 72.8 bits (178), Expect = 1e-14
		 Identities = 83/423 (19%), Positives = 137/423 (32%), Gaps = 41/423 (9%)
		
		Query: 972  VYGHPLPDEDVKFTLPASMTGNFTLSSETARTDANGDAVVTLRGTKAGEFTVTATLTRNN 1031
		             +      +D +  LPA + G   +   TAR            G  +    +T T+  N 
		Sbjct: 500  QHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDR-------NGNSSNNVLLTITVLSNG 552
		
		Query: 1032 TVAYQQVTFIGDTNSAQLQPLTASLNSIVAGNSTGSTLTATILDAYQNPLKDQLV-TFQS 1090
		             V  Q    + D         TA   S  A  +   T TAT+           +     S
		Sbjct: 553  QVVDQVG--VTD--------FTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVS 602
		
		Query: 1091 NDVTLSETEVTTNTLGQATVTMTSNIAGQHNVVVSRKAQASDNKTFSLSVLPDESSAKVI 1150
		                LS     TN  G+ATVT+ S+  GQ  VV ++ A+ +     +  +  D++ A + 
		Sbjct: 603  GTAVLSANSANTNGSGKATVTLKSDKPGQ-VVVSAKTAEMTSALNANAVIFVDQTKASIT 661
		
		Query: 1151 SITGAEKTITVGENITLRILVQDAFN-NVIAGQRVRLS-AQPTTNITIGDTAYTDNNGYA 1208
		             I   + T        +   V+       ++ Q V  +      + +   T  TD NGYA
		Sbjct: 662  EIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS---TEKTDTNGYA 718
		
		Query: 1209 YVNLLSTQPGVYQVTATLDNNSSSKVDVNVAN-GKLELTSSKPETTVHNSEGITLTATAR 1267
		             V L ST PG   V+A + + +       V     L +     E      +G   T   +
		Sbjct: 719  KVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQ 778
		
		Query: 1268 NARGEL-MPGQIITFSVTPEGATLSNTGEVLTDQSGQAKVTLTSDKVNVYTVTAIMGKDV 1326
		              +  L   G    ++        +N      D S   +VTL        +V +      
		Sbjct: 779  YGQVNLKASGGNGKYTW-----RSANPAIASVDAS-SGQVTLKEKGTTTISVIS------ 826
		
		Query: 1327 PVQSQVTVAVKADAKTAHVVSVVASPDTITADGIDSSTITSRVEDDYGFPVEGVDISHGL 1386
		                  T         + +V  + S      D +++              +E V  + G 
		Sbjct: 827  --SDNQTATYTIATPNSLIVPNM-SKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGA 883
		
		Query: 1387 DTK 1389
		              K
		Sbjct: 884  ANK 886
		
		
		
		 Score = 67.4 bits (164), Expect = 4e-13
		 Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 21/278 (7%)
		
		Query: 1168 RILVQDAFNNVIAGQRVRLSAQPTTNITIGDTAYTDNNGYAYVNLLSTQPGVYQVTATLD 1227
		            RI+  D+      GQ     +Q   +      AY         N+       Y       
		Sbjct: 484  RIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQ----GGSNVYKVTARAYDRNGNSS 539
		
		Query: 1228 NNSSSKVDVNVANGKL-------ELTSSKPETTVHNSEGITLTATARNARGELMPGQIIT 1280
		            NN    + V ++NG++       + T+ K       +E IT TAT +   G       ++
		Sbjct: 540  NNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK-NGVAQANVPVS 597
		
		Query: 1281 FSVTPEGATLSNTGEVLTDQSGQAKVTLTSDKVNVYTVTA-IMGKDVPVQSQVTVAVKAD 1339
		            F++    A LS      T+ SG+A VTL SDK     V+A        + +   + V  D
		Sbjct: 598  FNIVSGTAVLSANSAN-TNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFV--D 654
		
		Query: 1340 AKTAHVVSVVASPDTITADGIDSSTITSRVEDDYGFPVEGVDISHGLDTKGSPVVNIPTT 1399
		               A +  + A   T  A+G D+ T T +V      PV   +++    T    + +  T 
		Sbjct: 655  QTKASITEIKADKTTAVANGQDAITYTVKV-MKGDKPVSNQEVT--FTTTLGKL-SNSTE 710
		
		Query: 1400 RTDQSGQVTATITSTLAETLTVNVQVPGTANQSATITL 1437
		            +TD +G    T+TST      V+ +V   A       +
		Sbjct: 711  KTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEV 748
		
		
		
		 Score = 62.4 bits (151), Expect = 2e-11
		 Identities = 65/344 (18%), Positives = 112/344 (32%), Gaps = 26/344 (7%)
		
		Query: 848  LVADPDTIIAGNSQGSTLTAIITDFHNNPLKDMKVNFVAPGGSQLDNTTATTDQSGIVRV 907
		              AD  +  A  ++  T TA +               +  G + L   +A T+ SG   V
		Sbjct: 563  FTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATV 622
		
		Query: 908  HLTSSKAGSYSVDASLEVDKNIHQSVTITVVPNREQSVMTLNAGSGSAIANNTNIVTLTA 967
		             L S K G   V A      +   +  +  V   + S+  + A   +A+AN  + +T T 
		Sbjct: 623  TLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTV 682
		
		Query: 968  SVKDVYGHPLPDEDVKFTLPASMTGNFTLSSETARTDANGDAVVTLRGTKAGEFTVTATL 1027
		             V      P+ +++V FT       N      T +TD NG A VTL  T  G+  V+A +
		Sbjct: 683  KVMK-GDKPVSNQEVTFTTTLGKLSN-----STEKTDTNGYAKVTLTSTTPGKSLVSARV 736
		
		Query: 1028 TRNNT-VAYQQVTFIGDTNSAQLQPLTASLNSIVAGNSTGSTLTATI-LDAYQNPLKDQL 1085
		            +     V   +V F           +      IV     G   T  +             
		Sbjct: 737  SDVAVDVKAPEVEFFTTLT------IDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN 790
		
		Query: 1086 VTFQSNDVTLSETEVTTNTLGQATVTMTSNIAGQHNVVVSRKAQASDNKTFSLSVLPDES 1145
		              +       +   + +       VT+     G   + V     +SDN+T + ++     
		Sbjct: 791  GKY---TWRSANPAIASVDASSGQVTL--KEKGTTTISVI----SSDNQTATYTI--ATP 839
		
		Query: 1146 SAKVISITGAEKTITVGENI-TLRILVQDAFNNVIAGQRVRLSA 1188
		            ++ ++       T     N          +  N +        A
		Sbjct: 840  NSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGA 883
		
		
		
		 Score = 33.5 bits (76), Expect = 0.009
		 Identities = 44/314 (14%), Positives = 91/314 (28%), Gaps = 38/314 (12%)
		
		Query: 471 AALEAAGGKVSTSGKDITVTLPGYRFTNTPETDNTWSIDVTAEDVKGNLSRHEQSMVVIQ 530
		           A L A     + SGK  TVTL            +     V +       S    + V+  
		Sbjct: 605 AVLSANSANTNGSGK-ATVTL----------KSDKPGQVVVSAKTAEMTSALNANAVIF- 652
		
		Query: 531 APTLSQKDSLLSVNPLTVAADKKSTTTLTVTAHDSDGTPVPGLALQTRSEGVQDITLSDW 590
		                   + +  +  T  A+ +   T TV        PV      T +  +  ++ S  
		Sbjct: 653 VDQTKASITEIKADKTTAVANGQDAITYTVKV-MKGDKPVSN-QEVTFTTTLGKLSNSTE 710
		
		Query: 591 TDNGDGSYTQILTAGTTSGSVTLTPQINGESAVKESIVVNIVPVVSSRDHSSITIDNVSY 650
		             + +G     LT  TT G   ++ +++  +   ++  V     ++              
		Sbjct: 711 KTDTNGYAKVTLT-STTPGKSLVSARVSDVAVDVKAPEVEFFTTLTI------------- 756
		
		Query: 651 YAGDDIKVRVELKD-DSNQPVAYQKEELVKAVTVENSKPGATIVWHEEQPGVYAANYPAY 709
		              DD  + +         P  + +   V       +       W    P + + +  + 
		Sbjct: 757 ---DDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN---GKYTWRSANPAIASVDASSG 810
		
		Query: 710 KQGTALRAQLSLHNWNAPLQSHIYNIEANQNKARVATLSATNNDVYADKKTFNTLTINVT 769
		           +     +   ++   ++  Q+  Y I    +   +   + +    Y D            
		Sbjct: 811 QVTLKEKGTTTISVISSDNQTATYTIATPNS---LIVPNMSKRVTYNDAVNTCKNFGGKL 867
		
		Query: 770 DESDNPLTNHQVTF 783
		             S N L N    +
		Sbjct: 868 PSSQNELENVFKAW 881
		
		
	3966#JEONG1266_20800	UREASE#Urea amidohydrolase (urease) protein signature.	34	0.001
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 33.6 bits (77), Expect = 0.001
		 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
		
		Query: 26  CDVLVANGKIIAVASNIPSDIVPDCT--------VVDLSGQILCPGFIDQHVHLIGGGGE 77
		            D+ + +G+I A+      D+ P  T        V+   G+I+  G +D H+H I     
		Sbjct: 86  ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI----- 140
		
		Query: 78  AGPTTRTPEVALSRLTEAGVTSVVG 102
		                +  E AL     +G+T ++G
		Sbjct: 141 ---CPQQIEEALM----SGLTCMLG 158
		
		
	3976#JEONG1266_20855	PF06580#Sensor histidine kinase	31	0.008
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 31.4 bits (71), Expect = 0.008
		 Identities = 10/49 (20%), Positives = 25/49 (51%)
		
		Query: 230 LVPLIPAIIMISTTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVAFV 278
		           +  +I  ++     I  +W V +T  W ++ FI + P+A  + + ++ +
		Sbjct: 73  MGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII 121
		
		
	3977#JEONG1266_20860	SURFACELAYER#Lactobacillus surface layer protein signature.	28	0.047
		>SURFACELAYER#Lactobacillus surface layer protein signature.
		          Length = 439
		
		 Score = 28.1 bits (62), Expect = 0.047
		 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
		
		Query: 211 SQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVS 270
		           S+N G  ++  +A+  N  FT      PA  V V L ++G    ++  +       +  +
		Sbjct: 133 SENAGKEITIGSAN-PNVTFTEKTGDQPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYN 191
		
		Query: 271 LGLTANYARTGGQVTAGNV 289
		             +      TG  VT G V
		Sbjct: 192 SNVNFYDVTTGATVTTGAV 210
		
		
	3978#JEONG1266_20865	VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.	30	0.003
		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.
		          Length = 1291
		
		 Score = 30.4 bits (68), Expect = 0.003
		 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
		
		Query: 3   WRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAG 62
		           W  R   + A LA + +TI  + VT  VN   +      +     +     +       G
		Sbjct: 258 WMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTH------IG 311
		
		Query: 63  AASAWHDVALELTNCPVG--TSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLN 120
		               W    L +   P G    +     S    +      Q ++QN       +  N+  
		Sbjct: 312 TLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQ 371
		
		Query: 121 TGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQA 158
		               +  QV D   +      V    +N  A  GTI+ 
		Sbjct: 372 KTEIQPTQVIDGPFAGGKNTVVNINRINTNA-DGTIRV 408
		
		
	3980#JEONG1266_20875	PF00577#Outer membrane usher protein FimD	1089	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score = 1089 bits (2819), Expect = 0.0
		 Identities = 869/878 (98%), Positives = 873/878 (99%)
		
		Query: 1   MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQA 60
		           MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFA QAPLSSAELYFNPRFLADDPQA
		Sbjct: 1   MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA 60
		
		Query: 61  VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120
		           VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
		Sbjct: 61  VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120
		
		Query: 121 TASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180
		           TASV+GMNLLADDACVPLT+M+ DATA LDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
		Sbjct: 121 TASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180
		
		Query: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSK 240
		           GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSD SSGSK
		Sbjct: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK 240
		
		Query: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300
		           NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
		Sbjct: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300
		
		Query: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360
		           IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
		Sbjct: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360
		
		Query: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420
		           PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY
		Sbjct: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420
		
		Query: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480
		           RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
		Sbjct: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480
		
		Query: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRS 540
		           YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR+
		Sbjct: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT 540
		
		Query: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLARNVNI 600
		           STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLA NVNI
		Sbjct: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI 600
		
		Query: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660
		           PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD
		Sbjct: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660
		
		Query: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720
		           GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
		Sbjct: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720
		
		Query: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780
		           VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
		Sbjct: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780
		
		Query: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840
		           TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
		Sbjct: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840
		
		Query: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		           GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
		Sbjct: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		
		
JEONG1266_20965	JEONG1266_21125	Y	Y	Y	JEONG1266_20890	JEONG1266_21100
	JEONG1266_20965	-1	18	-4.504516	N-acetylneuraminate epimerase
	JEONG1266_20970	0	27	-6.672580	restriction endonuclease
	JEONG1266_20975	1	33	-7.938018	low calcium response protein S
	JEONG1266_20985	1	35	-10.953868	integrase
	JEONG1266_20990	1	29	-8.150139	transcriptional regulator
	JEONG1266_20995	1	26	-6.214892	hypothetical protein
	JEONG1266_21000	-1	21	-4.235448	hypothetical protein
	JEONG1266_21005	-1	26	-6.133079	resolvase
	JEONG1266_21010	0	29	-6.108786	hypothetical protein
	JEONG1266_21015	-1	27	-5.548961	hypothetical protein
	JEONG1266_21020	-1	31	-6.230607	NIPSNAP family containing protein
	JEONG1266_21025	-1	30	-6.456307	hypothetical protein
	JEONG1266_21030	1	35	-6.935289	integrase
	JEONG1266_21035	1	30	-4.456633	*alcohol dehydrogenase
	JEONG1266_21040	-1	24	-3.191535	hypothetical protein
	JEONG1266_21045	0	21	-1.720406	lipopolysaccharide ABC transporter permease
	JEONG1266_21050	-1	16	-0.855630	lipopolysaccharide ABC transporter permease
	JEONG1266_21055	-2	16	-0.147079	leucyl aminopeptidase
	JEONG1266_21060	-2	13	1.150638	DNA polymerase III subunit chi
	JEONG1266_21070	-3	16	2.941323	valine--tRNA ligase
	JEONG1266_21075	-1	22	3.094557	hypothetical protein
	JEONG1266_21080	-2	19	0.789317	acetyltransferase
	JEONG1266_21085	-2	18	0.393887	RNase E inhibitor protein
	JEONG1266_21095	-2	19	-1.017639	ornithine carbamoyltransferase
	JEONG1266_21100	-1	17	-5.600000	hypothetical protein
	JEONG1266_21105	0	27	-10.207499	toxin-antitoxin biofilm protein TabA
	JEONG1266_21110	0	25	-8.181872	TetR family transcriptional regulator
	JEONG1266_21115	0	26	-7.314593	oxidoreductase
	JEONG1266_21120	1	28	-7.552002	hypothetical protein
	JEONG1266_21125	2	37	-9.559130	hypothetical protein
	4024#JEONG1266_21110	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	5e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 5e-04
		 Identities = 16/48 (33%), Positives = 19/48 (39%)
		
		Query: 97  PAIRGKGLAKKLALKAMEEAREMGFKRCYLETTAFLKEAIGLYEHLGF 144
		              R KG+   L  KA+E A+E  F    LET      A   Y    F
		Sbjct: 99  KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
		
		
	4027#JEONG1266_21125	TYPE4SSCAGX#Type IV secretion system CagX conjugation protein si...	32	0.005
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein
		           signature.
		          Length = 522
		
		 Score = 32.4 bits (73), Expect = 0.005
		 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
		
		Query: 138 IIFPQPDGSTNRYERKSFERKDESSLHLITNKVLACYQR--EANKEIARLLNNHQKLNNL 195
		           +I   PD      ++K+ E++ E+       +     +R  E  K  A L N    ++N 
		Sbjct: 131 LIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNP 190
		
		Query: 196 QKLNNLQKLNNLQKLNNIQKLNNIQKLNNIQELNNSQELNNSQELNNSQ 244
		           Q L+N + L+ L K     +L+ +++L ++QE   +  L   +ELN  Q
		Sbjct: 191 QNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQ 239
		
		
	4029#JEONG1266_21135	HTHTETR#TetR bacterial regulatory protein HTH signature.	50	9e-10
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 49.6 bits (118), Expect = 9e-10
		 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
		
		Query: 5   KQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLF 64
		           ++++   +  R   +  +  A  LF Q+G  + S+ E+    G+   ++Y  F  K+ LF
		Sbjct: 3   RKTKQEAQETR---QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59
		
		Query: 65  SRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRY 104
		           S +           L    +   P       VL+E     
		Sbjct: 60  SEIWELSESN-IGELELEYQAKFP--GDPLSVLREILIHV 96
		
		
	4030#JEONG1266_21140	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	87	1e-22
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 86.6 bits (214), Expect = 1e-22
		 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
		
		Query: 6   GKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFT-----DS 60
		           GK   I G ++GIG A+ R   + GA++      + +  E++     A A        D 
		Sbjct: 8   GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66
		
		Query: 61  ADRDAVIDVV----RKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVE 116
		            D  A+ ++     R+ G +DILV  AG+   G    L+ ++ +  F +N    ++AS  
		Sbjct: 67  RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126
		
		Query: 117 AARQMP--EGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVV 174
		            ++ M     G I+ +GS N   +P   MAAYA+SK+A     + L  +     I  N+V
		Sbjct: 127 VSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185
		
		Query: 175 QPGPIDTDA--------NPANGPMRDMLHSF---MAIKRHGQPEEVAGMVAWLAGPEASF 223
		            PG  +TD         N A   ++  L +F   + +K+  +P ++A  V +L   +A  
		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245
		
		Query: 224 VTGAMHTIDG 233
		           +T     +DG
		Sbjct: 246 ITMHNLCVDG 255
		
		
JEONG1266_21355	JEONG1266_21400	Y	Y	N	JEONG1266_21275	JEONG1266_21490
	JEONG1266_21355	0	26	-3.054692	50S ribosomal protein L9
	JEONG1266_28235	2	30	-3.817211	30S ribosomal protein S18
	JEONG1266_21370	1	30	-3.678105	primosomal replication protein N
	JEONG1266_21375	1	28	0.602217	30S ribosomal protein S6
	JEONG1266_21380	-2	23	2.738246	hypothetical protein
	JEONG1266_21385	-1	24	3.413474	L-ribulose-5-phosphate 4-epimerase
	JEONG1266_21390	-1	27	3.521412	xylulose 5-phosphate 3-epimerase
	JEONG1266_21395	-2	28	3.414639	3-keto-L-gulonate-6-phosphate decarboxylase
	JEONG1266_21400	-1	31	3.359448	PTS ascorbate-specific transporter subunit IIA
	4082#JEONG1266_21410	ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.	28	0.034
		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.
		          Length = 331
		
		 Score = 27.8 bits (62), Expect = 0.034
		 Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 2/19 (10%)
		
		Query: 105 FNGDVQI--ELTGYWTWEQ 121
		           F G   +   L   W  EQ
		Sbjct: 62  FKGQEDLGNGLKAIWQVEQ 80
		
		
JEONG1266_21465	JEONG1266_21555	Y	Y	N	JEONG1266_21380	JEONG1266_21600
	JEONG1266_21465	2	17	-2.868861	hypothetical protein
	JEONG1266_21470	4	15	-0.061316	hypothetical protein
	JEONG1266_21475	4	14	0.313711	hypothetical protein
	JEONG1266_21480	3	19	1.293034	hypothetical protein
	JEONG1266_21485	2	20	1.413265	23S rRNA
	JEONG1266_21490	4	24	2.442280	ribonuclease R
	JEONG1266_21495	4	24	2.563848	transcriptional repressor NsrR
	JEONG1266_21500	4	23	2.087630	adenylosuccinate synthase
	JEONG1266_21505	4	26	2.213288	hypothetical protein
	JEONG1266_21510	2	19	2.113457	HflC protein
	JEONG1266_21515	1	15	3.045047	HflK protein
	JEONG1266_21520	0	13	3.306766	GTPase HflX
	JEONG1266_21525	-1	12	2.863182	RNA chaperone Hfq
	JEONG1266_21530	-2	12	3.716237	tRNA (adenosine(37)-N6)-dimethylallyltransferase
	JEONG1266_21535	-2	13	3.743144	DNA mismatch repair protein MutL
	JEONG1266_21540	-2	15	3.871736	N-acetylmuramoyl-L-alanine amidase AmiB
	JEONG1266_21545	-2	16	3.285326	tRNA
	JEONG1266_21550	-3	14	3.096742	bifunctional ADP-dependent (S)-NAD(P)H-hydrate
	JEONG1266_21555	-1	15	3.689443	tRNA epoxyqueuosine(34) reductase QueG
	4096#JEONG1266_21480	PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase sign...	33	0.001
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase
		           signature.
		          Length = 572
		
		 Score = 32.8 bits (75), Expect = 0.001
		 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
		
		Query: 85  VNPSLINEVAEEIARLENLITAEEQVLSNLEVSRDGVEKAVAATAQRIAQFEQQMEVVKA 144
		           +  + I +V+ EI +L     A E+    L   +D  E ++ A    I  F   + V+  
		Sbjct: 29  IEKTSITDVSTEIEKLT---AALEKSKEELRAIKDQTEASMGADKAEI--FAAHLLVLDD 83
		
		Query: 145 TEAMQRAQQAVTTSTVGASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDE 204
		            E +   +  +    + A  ++   ++               +D     E+ AD RD+ +
		Sbjct: 84  PELVDGIKGKIENEQMNAEYALKEVSD-------MFVSMFESMDNEYMKERAADIRDVSK 136
		
		Query: 205 KL 206
		           ++
		Sbjct: 137 RV 138
		
		
	4099#JEONG1266_21495	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	31	0.028
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 30.6 bits (69), Expect = 0.028
		 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
		
		Query: 165 VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV-GKIVEVLGDNM 218
		           +VP+D  L    L+    I    +G   ++++   P  R   + GK+  +  D +
		Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413
		
		
	4104#JEONG1266_21520	cloacin#Cloacin signature.	32	0.006
		>cloacin#Cloacin signature.
		          Length = 551
		
		 Score = 31.6 bits (71), Expect = 0.006
		 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
		
		Query: 17  GSSKPGGNSEGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGP---- 72
		            S   G +SE N   GG   G               G  GGG GTG G  S+   P    
		Sbjct: 33  ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG-GNLSAVAAPVAFG 91
		
		Query: 73  -----RPQLGGRVVTIAAAAI 88
		                 P  GG  V+I+A A+
		Sbjct: 92  FPALSTPGAGGLAVSISAGAL 112
		
		
	4105#JEONG1266_21525	SECA#SecA protein signature.	32	0.005
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 32.2 bits (73), Expect = 0.005
		 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 6/144 (4%)
		
		Query: 282 HVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEENK-PIRV 340
		            ++D +DV    N    +     IDA+  P  L   ++  +   + R+  D +   PI  
		Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSL--EEMWDIPGLQERLKNDFDLDLPIAE 722
		
		Query: 341 WLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSV 400
		           WL  +       L + +  +      +    +  +  R   +   LQ ++  W E   ++
		Sbjct: 723 WLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 782
		
		Query: 401 SLQVRMPIVDWRRLCKQEPALIDY 424
		              +R  I   R   +++P   +Y
		Sbjct: 783 D-YLRQGIH-LRGYAQKDP-KQEY 803
		
		
JEONG1266_21715	JEONG1266_21760	Y	Y	N	JEONG1266_21640	JEONG1266_21845
	JEONG1266_21715	0	19	-3.427413	transcriptional regulator CadC
	JEONG1266_21725	-1	19	-3.866337	lysine:cadaverine antiporter
	JEONG1266_21730	0	19	-4.105620	lysine decarboxylase LdcC
	JEONG1266_21735	-1	24	-3.219539	peptide permease
	JEONG1266_21740	-2	19	-3.842775	lysine--tRNA ligase
	JEONG1266_21745	-2	15	-3.867585	hypothetical protein
	JEONG1266_21750	1	13	-4.262171	hypothetical protein
	JEONG1266_21755	0	17	-4.072289	hypothetical protein
	JEONG1266_21760	0	17	-3.935914	hypothetical protein
	4141#JEONG1266_21730	SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD cha...	37	8e-05
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD
		           chaperone signature.
		          Length = 168
		
		 Score = 36.8 bits (85), Expect = 8e-05
		 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
		
		Query: 391 PLDEKQLAALNTEIDNIVTLPELNNLS-----IIYQIKAVSALVKGKTDESYQAINTGID 445
		              ++   A+ + +    T+  LN +S      +Y + A +    GK +++++       
		Sbjct: 6   TDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSL-AFNQYQSGKYEDAHKVFQALCV 64
		
		Query: 446 LEMSWLNYVL-LGKVYEMKGMNREAADAYLTAFNLRP 481
		           L+     + L LG   +  G    A  +Y     +  
		Sbjct: 65  LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101
		
		
	4144#JEONG1266_21745	TCRTETA#Tetracycline resistance protein signature.	30	0.020
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 30.2 bits (68), Expect = 0.020
		 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 14/190 (7%)
		
		Query: 44  NHAISLFSAYA-SLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSL 102
		            H   L + YA       P+LG   +DR  G R  ++       + + ++       + L
		Sbjct: 43  AHYGILLALYALMQFACAPVLGAL-SDRF-GRRPVLLVSLAGAAVDYAIMAT-APFLWVL 99
		
		Query: 103 YLALAIIICGYGLFKSNISCLLGELYDEND-HRRDGGFSLLYAAGNIGSIAAPIACGLAA 161
		           Y+   +     G+  +  +     + D  D   R   F  + A    G +A P+  GL  
		Sbjct: 100 YIGRIV----AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG 155
		
		Query: 162 QWYGWHVGFALAGGGMFIGLLIFLSGHRHFQSTRSMDKKALTSVKF-ALPVWSWLVVMLC 220
		             +  H  F  A     +  L FL+G      +   +++ L       L  + W   M  
		Sbjct: 156 G-FSPHAPFFAAA---ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211
		
		Query: 221 LAPVFFTLLL 230
		           +A +     +
		Sbjct: 212 VAALMAVFFI 221
		
		
	4148#JEONG1266_21765	SACTRNSFRASE#Streptothricin acetyltransferase signature.	26	0.012
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 26.4 bits (58), Expect = 0.012
		 Identities = 9/28 (32%), Positives = 16/28 (57%)
		
		Query: 32  LAIIEHTDVDESLKGQGIGKQLVAKVVE 59
		            A+IE   V +  + +G+G  L+ K +E
		Sbjct: 89  YALIEDIAVAKDYRKKGVGTALLHKAIE 116
		
		
JEONG1266_21875	JEONG1266_21975	Y	Y	N	JEONG1266_21795	JEONG1266_21995
	JEONG1266_21875	2	39	5.661118	phosphonate ABC transporter ATP-binding protein
	JEONG1266_21880	1	40	7.136381	phosphonate ABC transporter substrate-binding
	JEONG1266_21885	1	44	8.568321	phosphonate ABC transporter, permease protein
	JEONG1266_21890	2	43	9.133522	phosphonate metabolism transcriptional regulator
	JEONG1266_21895	1	43	10.159869	phosphonate C-P lyase system protein PhnG
	JEONG1266_21900	0	41	9.955844	phosphonate C-P lyase system protein PhnH
	JEONG1266_21905	0	40	9.765955	carbon-phosphorus lyase complex subunit PhnI
	JEONG1266_21910	1	42	9.702466	carbon-phosphorus lyase complex subunit PhnJ
	JEONG1266_21915	2	41	9.336454	phosphonate C-P lyase system protein PhnK
	JEONG1266_21920	1	41	8.857579	phosphonate C-P lyase system protein PhnL
	JEONG1266_21925	0	39	9.170811	phosphonate metabolism protein PhnM
	JEONG1266_21930	1	37	8.615149	phosphonate metabolism
	JEONG1266_21935	2	31	7.407219	aminoalkylphosphonic acid N-acetyltransferase
	JEONG1266_21940	2	27	6.413281	phosphonate metabolism protein PhnP
	JEONG1266_21945	1	27	5.989898	hypothetical protein
	JEONG1266_21950	1	27	5.743210	hybrid sensor histidine kinase/response
	JEONG1266_21955	1	24	4.894633	D-xylose ABC transporter ATP-binding protein
	JEONG1266_21960	1	23	4.776339	ribose ABC transporter permease
	JEONG1266_21965	0	23	4.561288	transcriptional regulator
	JEONG1266_21970	0	21	4.154448	D-lyxose/D-mannose family sugar isomerase
	JEONG1266_21975	-1	18	3.039474	hypothetical protein
	4171#JEONG1266_21885	PF05272#Virulence-associated E family protein	29	0.020
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.020
		 Identities = 12/22 (54%), Positives = 13/22 (59%)
		
		Query: 32  MVALLGPSGSGKSTLLRHLSGL 53
		            V L G  G GKSTL+  L GL
		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
		
		
	4180#JEONG1266_21930	PF05272#Virulence-associated E family protein	29	0.015
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.015
		 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
		
		Query: 36  CVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEI------RK 89
		            VVL G  G GKSTL+ +L       +    I  G +  + +        E+      R+
		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIV--AYELSEMTAFRR 655
		
		Query: 90  TTVGWVSQFL 99
		                V  F 
		Sbjct: 656 ADAEAVKAFF 665
		
		
	4183#JEONG1266_21945	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	3e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 3e-04
		 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
		
		Query: 47  HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 106
		            L  L+   +G I +   +     N    I+++ V    R   VG+ LL  A E A++  
		Sbjct: 68  FLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122
		
		Query: 107 AEMTELSTNVKRHDAHRFYLREGY 130
		                L T      A  FY +  +
		Sbjct: 123 FCGLMLETQDINISACHFYAKHHF 146
		
		
	4185#JEONG1266_21955	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	26	0.034
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 25.9 bits (57), Expect = 0.034
		 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
		
		Query: 11  TLLTLTTVPAQADIIDDTIGNIQ--------QAINDASNPDRGRDYEDSRDDGWQREVSD 62
		            LL LT + A+AD +      +Q        Q ++ +   ++  + +   +  +Q    +
		Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182
		
		Query: 63  DRRRQYDDRRRQFEDRRRQLDDRQHQLNQERRQLEDEERRMEDEYGQ 109
		           +  R     + QF   + Q   ++  L+++R +      R+      
		Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229
		
		
	4186#JEONG1266_21960	HTHFIS#FIS bacterial regulatory protein HTH signature.	58	6e-11
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 58.3 bits (141), Expect = 6e-11
		 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
		
		Query: 643 VLVLEDEAAVRQTICEQLHLLGYLTLEASSGEQALDLLAASAEIDIFISDLMLPGGMSGA 702
		           +LV +D+AA+R  + + L   GY     S+       +AA  + D+ ++D+++P   +  
		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP-DENAF 63
		
		Query: 703 EVVNAARKLYPHLTLLLISGQ 723
		           +++   +K  P L +L++S Q
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQ 84
		
		
	4188#JEONG1266_21970	PF00577#Outer membrane usher protein FimD	28	0.047
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score = 28.3 bits (63), Expect = 0.047
		 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
		
		Query: 219 FVYGMSGLLSGLGGIMSASRLYSANGNLGMG-YELDAIAAVILGGTSFVGGIGTITGTLV 277
		            ++G+    +  GG   A R  + N  +G     L A++  +    S +       G  V
		Sbjct: 400 LLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSV 459
		
		Query: 278 GALIIATLNNGMT 290
		             L   +LN   T
		Sbjct: 460 RFLYNKSLNESGT 472
		
		
	4189#JEONG1266_21975	SUBTILISIN#Subtilisin serine protease family (S8) signature.	29	0.027
		>SUBTILISIN#Subtilisin serine protease family (S8) signature.
		          Length = 326
		
		 Score = 28.7 bits (64), Expect = 0.027
		 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
		
		Query: 55  KLAGDNVKVTLVSSGYDLGQQVSQIDNFIAANVDMIIL---NAADSKGIGPAVKRAKDAG 111
		            L    +KV            +  I   I   VD+I +      D   +  AVK+A  + 
		Sbjct: 111 DLLI--IKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQ 168
		
		Query: 112 IVVVA 116
		           I+V+ 
		Sbjct: 169 ILVMC 173
		
		
JEONG1266_22040	JEONG1266_22095	Y	Y	N	JEONG1266_21965	JEONG1266_22160
	JEONG1266_22040	-1	19	3.664364	heme lyase NrfEFG subunit NrfF
	JEONG1266_22045	-1	18	4.108551	heme lyase subunit NrfE
	JEONG1266_22050	-1	15	3.729700	cytochrome c nitrite reductase subunit NrfD
	JEONG1266_22055	-3	19	4.240256	cytochrome c nitrite reductase Fe-S protein
	JEONG1266_22060	-2	21	3.749771	cytochrome c nitrite reductase pentaheme
	JEONG1266_22065	-2	23	3.415761	nitrite reductase c552 subunit
	JEONG1266_22070	-1	15	-0.768890	acetate--CoA ligase
	JEONG1266_22075	-1	16	0.017793	hypothetical protein
	JEONG1266_22080	-1	16	0.575673	cation/acetate symporter ActP
	JEONG1266_22085	-1	15	-0.712983	hypothetical protein
	JEONG1266_22090	-1	15	-0.632367	Na+/H+ antiporter
	JEONG1266_22095	0	15	-3.165558	permease
	4207#JEONG1266_22065	VACJLIPOPROT#VacJ lipoprotein signature.	30	0.006
		>VACJLIPOPROT#VacJ lipoprotein signature.
		          Length = 251
		
		 Score = 29.9 bits (67), Expect = 0.006
		 Identities = 6/21 (28%), Positives = 11/21 (52%)
		
		Query: 179 FGNLDDPNSEISQLLRQKPTY 199
		            GNL++P   ++  L+  P  
		Sbjct: 75  TGNLEEPAVMVNYFLQGDPYQ 95
		
		
	4211#JEONG1266_22085	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	27	0.020
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		          signature.
		          Length = 478
		
		 Score = 26.7 bits (59), Expect = 0.020
		 Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
		
		Query: 17 ELVEKR-QRFATILSIIMLAVYIGFILLIAFAP 48
		          EL+E    R   +++  ++   +   +L     
		Sbjct: 47 ELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQ 79
		
		
JEONG1266_22175	JEONG1266_22325	Y	Y	Y	JEONG1266_22100	JEONG1266_22300
	JEONG1266_22175	-2	21	-4.766684	tRNA dihydrouridine synthase DusA
	JEONG1266_22180	-1	28	-7.382470	integrase
	JEONG1266_22185	1	32	-7.930001	damage-inducible protein DinI
	JEONG1266_22190	5	42	-10.459935	T3SS effector NleG
	JEONG1266_22195	6	36	-3.610590	T3SS effector protein NleG8
	JEONG1266_22200	4	31	-1.799876	hypothetical protein
	JEONG1266_22205	3	25	0.692470	phage tail protein
	JEONG1266_22210	3	22	1.714914	phage tail protein
	JEONG1266_22215	1	21	2.357281	enterobacterial Ail/Lom family protein
	JEONG1266_22220	1	19	1.950216	host specificity protein J
	JEONG1266_22225	-1	18	-1.488096	hypothetical protein
	JEONG1266_22235	0	23	-6.293025	hypothetical protein
	JEONG1266_22240	1	27	-5.850556	Eae protein
	JEONG1266_22245	0	30	-6.687517	methyltransferase
	JEONG1266_22250	2	31	-7.856966	methyltransferase
	JEONG1266_22255	2	33	-11.960526	hypothetical protein
	JEONG1266_22260	1	29	-9.486987	pyocin activator protein PrtN
	JEONG1266_22265	1	27	-9.207844	hypothetical protein
	JEONG1266_22270	0	21	-5.301411	hypothetical protein
	JEONG1266_22275	-1	20	-4.172959	transcriptional repressor
	JEONG1266_22280	0	18	-2.990902	hypothetical protein
	JEONG1266_22285	0	14	2.473433	MATE family efflux transporter DinF
	JEONG1266_22290	0	14	2.184851	repressor LexA
	JEONG1266_22295	0	14	2.485221	diacylglycerol kinase
	JEONG1266_22300	0	14	-3.270564	glycerol-3-phosphate 1-O-acyltransferase
	JEONG1266_22305	-1	12	-2.873768	4-hydroxybenzoate polyprenyltransferase
	JEONG1266_22310	-1	9	-2.466288	chorismate lyase
	JEONG1266_22315	-1	11	-3.735323	hypothetical protein
	JEONG1266_22320	0	14	-4.377946	maltose regulon protein MalM
	JEONG1266_22325	-1	14	-4.085272	maltoporin
	4238#JEONG1266_22220	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	44	1e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 43.9 bits (103), Expect = 1e-06
		 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 30/289 (10%)
		
		Query: 9    LKDGTGKPVENCTIQLKARRTSSTVVVNTVASENPDE-AGRYSMDVEYGQYSVILLVEGF 67
		            + D TG+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 68   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 127
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 128  ETSARNAGISASQAEENAANADTSAGDASESARQAA-ESAAAAKQSEEASSSSASAAAQK 186
		            ET A N+   +   E+N  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 187  ASESSQSAAEA------------ELSRKTAESAAGNASRDAT-TAAEKARE-----SAES 228
		                  +  E             E+ + T++ +      +     AE ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 229  AQSAEQSRIAAEEAVNRIPTVVGPPGPKGEQGPAGPQGPKGDKGERGDT 277
		             QS   +    E+      + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	4239#JEONG1266_22225	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	138	5e-44
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  138 bits (349), Expect = 5e-44
		 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 30/200 (15%)
		
		Query: 1   MRKLYAAILSAAICLAVSGAPAWASEQQATLSAGYLHARTSAPGSDNLNGINVKYRYEFT 60
		           M+K+      AA+    +G    +    +T++ GY  +      +  + G N+KYRYE  
		Sbjct: 1   MKKIACLSALAAVLAFTAGT---SVAATSTVTGGYAQSDAQGQMNK-MGGFNLKYRYEED 56
		
		Query: 61  DT-LGMVTSFSYAGDRNRQLTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGV 119
		           ++ LG++ SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV
		Sbjct: 57  NSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGV 108
		
		Query: 120 AYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYE 179
		            Y +  T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE
		Sbjct: 109 GYGKFQT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYE 151
		
		Query: 180 GSGSGDWRTDGFIVGVGYKF 199
		            S         +I GVGY+F
		Sbjct: 152 QSRIRSVDVGTWIAGVGYRF 171
		
		
JEONG1266_22870	JEONG1266_22975	Y	Y	Y	JEONG1266_22795	JEONG1266_22995
	JEONG1266_22870	-2	20	4.087757	catalase/peroxidase HPI
	JEONG1266_22880	-2	20	4.200486	methylenetetrahydrofolate reductase [NAD(P)H]
	JEONG1266_22885	-1	19	3.731460	hypothetical protein
	JEONG1266_22890	0	19	3.769296	bifunctional aspartate kinase/homoserine
	JEONG1266_22895	0	18	3.900895	cystathionine gamma-synthase
	JEONG1266_22900	1	17	0.993086	transcriptional repressor protein MetJ
	JEONG1266_22905	3	24	-2.150199	hypothetical protein
	JEONG1266_22910	2	28	-5.180895	hypothetical protein
	JEONG1266_22915	1	24	3.485474	transposase
	JEONG1266_22920	1	25	3.680656	transposase
	JEONG1266_22925	0	21	4.400021	transposase
	JEONG1266_22930	-1	19	3.987070	hypothetical protein
	JEONG1266_22935	-2	18	4.724216	RHS element protein
	JEONG1266_22940	-2	18	5.186324	50S ribosomal protein L31
	JEONG1266_22945	1	16	3.024775	primosomal protein N'
	JEONG1266_22950	0	13	3.105188	DNA-binding transcriptional regulator CytR
	JEONG1266_22955	-1	16	1.840726	cell division protein FtsN
	JEONG1266_22960	-2	15	0.265797	HslU--HslV peptidase proteolytic subunit
	JEONG1266_22965	-3	16	-1.833337	HslU--HslV peptidase ATPase subunit
	JEONG1266_22970	-1	15	-2.211932	1,4-dihydroxy-2-naphthoate
	JEONG1266_22975	-1	14	-3.003253	ribonuclease E activity regulator RraA
	4372#JEONG1266_22960	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	41	3e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 41.2 bits (96), Expect = 3e-06
		 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
		
		Query: 79   LTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSR 138
		            +          +QAD+   P+   E+   ++ P             + +AE  +  Q+S+
		Sbjct: 992  VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK--QESK 1049
		
		Query: 139  TTEQSWQQQT-RTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVTRA 197
		            T E++ Q  T  T+Q   V  + + +  A+TQ        +    T  ++ ++ A V + 
		Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109
		
		Query: 198  ADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQ 232
		              A   T + ++  +   Q    +  EQ+ETV+ Q
		Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQ--EQSETVQPQ 1142
		
		
	4374#JEONG1266_22970	HTHFIS#FIS bacterial regulatory protein HTH signature.	30	0.017
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 30.2 bits (68), Expect = 0.017
		 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
		
		Query: 49  TPKNILMIGPTGVGKTEIAR---RLAKLANAPFIKV 81
		           T   +++ G +G GK  +AR      K  N PF+ +
		Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
		
		
JEONG1266_23175	JEONG1266_23230	Y	Y	Y	JEONG1266_23100	JEONG1266_23295
	JEONG1266_23175	-1	22	3.043446	formate dehydrogenase-N subunit alpha
	JEONG1266_23180	-2	24	3.101056	formate dehydrogenase subunit beta
	JEONG1266_23185	-2	23	2.503276	formate dehydrogenase subunit gamma
	JEONG1266_23190	-1	18	1.446182	formate dehydrogenase accessory protein FdhE
	JEONG1266_23195	-2	20	-0.126053	hypothetical protein
	JEONG1266_23200	2	26	-0.369580	hypothetical protein
	JEONG1266_23205	-1	41	-7.460452	hypothetical protein
	JEONG1266_23210	-1	39	-10.399602	hypothetical protein
	JEONG1266_23215	-1	29	-6.570904	hypothetical protein
	JEONG1266_23220	-1	26	-5.468744	transposase
	JEONG1266_23225	-2	22	-4.534230	hypothetical protein
	JEONG1266_23230	-2	19	-4.276321	hypothetical protein
	4416#JEONG1266_23185	BCTERIALGSPH#Bacterial general secretion pathway protein H signa...	32	0.004
		>BCTERIALGSPH#Bacterial general secretion pathway protein H
		           signature.
		          Length = 170
		
		 Score = 32.2 bits (73), Expect = 0.004
		 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
		
		Query: 538 QMARRDNADPSGLGNT-LGWAWAWPLNRRILYNRASADPQGNPWDPKRQLLKWDGTKWTG 596
		            +  RD ADP+   +   G+ W  PL              G+    K  L    G  WT 
		Sbjct: 75  VLEARDGADPAPADDGWSGYRWL-PLRAG------RVATSGSIAGGKLNLAFAQGEAWTP 127
		
		Query: 597 WDIPDYSAAPPGSGVGPF 614
		            D PD    P G  + PF
		Sbjct: 128 GDNPDVLIFPGGE-MTPF 144
		
		
JEONG1266_23370	JEONG1266_23450	Y	N	Y	JEONG1266_23295	JEONG1266_23515
	JEONG1266_23370	-2	13	-3.821368	hypothetical protein
	JEONG1266_23375	-2	13	-4.228524	hypothetical protein
	JEONG1266_23380	-2	20	-7.033464	acyltransferase
	JEONG1266_28245	-3	19	-6.352081	hypothetical protein
	JEONG1266_23385	-3	19	-5.497832	protein disulfide isomerase
	JEONG1266_23390	-2	20	-5.204753	stress response serine/threonine protein kinase
	JEONG1266_23395	-2	14	-2.412710	hypothetical protein
	JEONG1266_23400	-1	15	-0.951289	molybdenum cofactor guanylyltransferase MobA
	JEONG1266_23405	-2	14	0.428319	molybdopterin-guanine dinucleotide biosynthesis
	JEONG1266_23410	-3	15	1.066324	**protoporphyrinogen oxidase
	JEONG1266_23445	-2	20	3.072887	potassium transporter
	JEONG1266_23450	-2	19	3.084013	YigZ family protein
JEONG1266_23580	JEONG1266_23640	Y	N	N	JEONG1266_23505	JEONG1266_23700
	JEONG1266_23580	2	18	-6.715349	hypothetical protein
	JEONG1266_23585	3	26	-10.334275	chemotaxis protein CheD
	JEONG1266_23590	1	19	-8.973334	hypothetical protein
	JEONG1266_23595	3	25	-11.406553	magnesium transporter CorA
	JEONG1266_23600	0	21	-9.137168	hypothetical protein
	JEONG1266_23605	-1	19	-7.979205	hypothetical protein
	JEONG1266_23610	-2	13	-0.335808	magnesium and cobalt transport protein CorA
	JEONG1266_23615	-2	17	1.870274	hypothetical protein
	JEONG1266_23620	-2	17	2.155086	hypothetical protein
	JEONG1266_23625	-2	16	2.612561	acetolactate synthase
	JEONG1266_23630	-2	17	3.490048	DNA helicase II
	JEONG1266_23635	-1	20	4.533676	flavin mononucleotide phosphatase
	JEONG1266_23640	-1	20	3.269395	tyrosine recombinase XerC
JEONG1266_23830	JEONG1266_23855	Y	N	N	JEONG1266_23755	JEONG1266_23980
	JEONG1266_23830	1	21	3.072258	ATP-dependent DNA helicase Rep
	JEONG1266_23835	-1	25	3.893418	hypothetical protein
	JEONG1266_23840	-1	29	4.667253	peptidylprolyl isomerase
	JEONG1266_23845	-1	28	4.625792	ketol-acid reductoisomerase
	JEONG1266_23850	-1	21	4.653621	transcriptional regulator IlvY
	JEONG1266_23855	-2	22	4.379145	PLP-dependent threonine dehydratase
JEONG1266_24005	JEONG1266_24235	Y	Y	N	JEONG1266_23930	JEONG1266_24125
	JEONG1266_24005	2	21	-0.479928	16S rRNA (guanine(527)-N(7))-methyltransferase
	JEONG1266_24010	3	34	0.735403	ATP F0F1 synthase subunit I
	JEONG1266_24015	2	34	0.994836	F0F1 ATP synthase subunit A
	JEONG1266_24020	4	41	2.032187	ATP F0F1 synthase subunit C
	JEONG1266_24025	4	39	2.139581	F0F1 ATP synthase subunit B
	JEONG1266_24030	3	35	2.074666	ATP synthase F1 subunit delta
	JEONG1266_24035	3	37	2.255044	F0F1 ATP synthase subunit alpha
	JEONG1266_24040	2	30	1.543899	F0F1 ATP synthase subunit gamma
	JEONG1266_24045	2	29	0.700836	F0F1 ATP synthase subunit beta
	JEONG1266_24050	-1	20	-0.473347	F0F1 ATP synthase subunit epsilon
	JEONG1266_24055	-1	14	-1.684734	UDP-N-acetylglucosamine
	JEONG1266_24060	0	12	-2.764442	glutamine--fructose-6-phosphate
	JEONG1266_24065	1	20	-5.234064	fimbrial protein
	JEONG1266_24070	0	14	-4.297391	fimbrial chaperone protein
	JEONG1266_24075	0	9	-2.807930	fimbrial protein
	JEONG1266_24080	-1	9	-1.741282	fimbrial protein
	JEONG1266_24085	-2	13	-0.767619	fimbrial protein
	JEONG1266_24090	-3	20	0.056276	fimbrial protein
	JEONG1266_24095	-2	29	1.735335	phosphate ABC transporter substrate-binding
	JEONG1266_24100	-2	27	1.285356	phosphate ABC transporter permease subunit PstC
	JEONG1266_24105	0	20	-9.678395	phosphate ABC transporter, permease protein
	JEONG1266_24110	1	25	-12.784894	phosphate ABC transporter ATP-binding protein
	JEONG1266_24115	4	38	-16.557544	phosphate transport system regulatory protein
	JEONG1266_24120	6	52	-20.456661	hypothetical protein
	JEONG1266_24125	7	51	-20.854367	hypothetical protein
	JEONG1266_24130	5	45	-18.915923	type III effector protein
	JEONG1266_24135	1	28	-12.602530	hypothetical protein
	JEONG1266_24140	1	24	-11.313037	hypothetical protein
	JEONG1266_24145	0	21	-9.177491	hypothetical protein
	JEONG1266_24150	-1	16	-6.605845	type III effector
	JEONG1266_24155	-3	13	1.032717	6-phosphogluconate phosphatase
	JEONG1266_24160	-3	12	-0.008481	adenine permease PurP
	JEONG1266_24165	-2	12	-0.698065	hypothetical protein
	JEONG1266_24170	-2	12	-1.105855	hypothetical protein
	JEONG1266_24175	-1	15	-5.369787	DNA-binding transcriptional regulator
	JEONG1266_24180	0	18	-6.698298	multidrug transporter subunit MdtL
	JEONG1266_24185	0	16	-5.585391	tryptophan permease
	JEONG1266_24190	-1	13	-3.832242	tryptophanase
	JEONG1266_24195	-1	15	-4.313410	tryptophanase leader peptide
	JEONG1266_24200	-1	14	-3.655117	enterotoxin
	JEONG1266_24205	-2	20	2.220419	hypothetical protein
	JEONG1266_24210	0	19	2.988444	tRNA uridine(34) 5-carboxymethylaminomethyl
	JEONG1266_24215	0	21	2.457226	membrane protein insertase YidC
	JEONG1266_24220	2	15	2.764057	membrane protein insertion efficiency factor
	JEONG1266_24225	3	23	3.026021	ribonuclease P protein component
	JEONG1266_24230	3	23	2.721948	50S ribosomal protein L34
	JEONG1266_24235	2	21	2.570998	chromosomal replication initiation protein DnaA
	4569#JEONG1266_24025	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	27	0.028
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 27.3 bits (60), Expect = 0.028
		 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
		
		Query: 31   AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQ--ANKRRSQILD 88
		              +EK +++  +  A      K+      + T   + A++ ++    Q    K  + +  
		Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108
		
		Query: 89   EAKAEAEQERTKIVA----------------QAQAEIEAER 113
		            E KA+ E E+T+ V                 Q QAE   E 
		Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149
		
		
	4575#JEONG1266_24055	RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family...	29	0.048
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family
		           signature.
		          Length = 1024
		
		 Score = 29.2 bits (65), Expect = 0.048
		 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
		
		Query: 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT 426
		           LGD +  D V + AG+   N           G DV     T        G  AT A   T
		Sbjct: 616 LGDGD--DKVFLSAGSA--NIYAGK------GHDVVYYDKTDTGYLTIDGTKATEAGNYT 665
		
		Query: 427 VTRNVGENALAISRVPQTQK 446
		           VTR +G +   +  V + Q+
		Sbjct: 666 VTRVLGGDVKVLQEVVKEQE 685
		
		
	4580#JEONG1266_24080	PF00577#Outer membrane usher protein FimD	769	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  769 bits (1986), Expect = 0.0
		 Identities = 329/875 (37%), Positives = 481/875 (54%), Gaps = 58/875 (6%)
		
		Query: 6   LFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMI 65
		            F+ L             + +  FNPR L  D P    D+ +F     LP GTY+VD+ +
		Sbjct: 26  FFVRLFVACAFAAQAPLSSAELYFNPRFLADD-PQAVADLSRFENGQELPPGTYRVDIYL 84
		
		Query: 66  NGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLI 125
		           N      ++V F   + +  + PC       LA+ G+   ++  +  + D  CV    +I
		Sbjct: 85  NNGYMATRDVTFNTGDSEQGIVPCLTR--AQLASMGLNTASVSGMNLLADDACVPLTSMI 142
		
		Query: 126 DGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTIRSNYD 185
		             AT  LD  +  LN+TIPQ +++N   GYI P  WD GINA ++NY+FS +   ++   
		Sbjct: 143 HDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSV-QNRIG 201
		
		Query: 186 DDDDSYYLNLRNGINLGAWRFRNYSTLN------SYDGNVDYHSVSNYIQRDIMALRSQI 239
		            +    YLNL++G+N+GAWR R+ +T +      S      +  ++ +++RDI+ LRS++
		Sbjct: 202 GNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRL 261
		
		Query: 240 MIGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIY 299
		            +GD +T  D+FD    RG +L +DD+MLP SQ GFAPV+HGIA+  A V IKQNGY IY
		Sbjct: 262 TLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIY 321
		
		Query: 300 QSAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIG 359
		            S VP G F + D+    + GDL VTIKE DGS Q F  P++S+ +L+REG T   ++ G
		Sbjct: 322 NSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAG 381
		
		Query: 360 EVR--DESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDV 417
		           E R  +     P   Q   +HG P G T+YGGTQLA+ Y +   GIGK+MGALGA+S D+
		Sbjct: 382 EYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDM 441
		
		Query: 418 THARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSD 477
		           T A S    D    GQS RFLY+K   ++ T  +LVGYRYS  G++   +    + N  +
		Sbjct: 442 TQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYN 501
		
		Query: 478 -----------------FWVTGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVER 520
		                            + +  N+R + + T TQ        +YL+ S Q YW T  V+ 
		Sbjct: 502 IETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQL-GRTSTLYLSGSHQTYWGTSNVDE 560
		
		Query: 521 LLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDFGKEQIFMFSMSIPLSCWMED 580
		             Q G N  + +I+W +S++ T    ++            G++Q+   +++IP S W+  
		Sbjct: 561 QFQAGLNTAFEDINWTLSYSLT----KNAWQK--------GRDQMLALNVNIPFSHWLRS 608
		
		Query: 581 --------SYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAG 632
		                   +  +YS++ + +   T   G+ GT+LE  NLSY+VQ  +     D  SG+ G
		Sbjct: 609 DSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGY-AGGGDGNSGSTG 667
		
		Query: 633 ---MTYDGTYGSVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAE 689
		              + Y G YG+ N  YS S D +   YG  GGVL H++GVT  Q L +TV LVKAPGA+
		Sbjct: 668 YATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAK 727
		
		Query: 690 GLSIENATGISTDWRGYTVKTQLSPYDENRVALNSDYFSKANIELENTVINLVPTRGAVV 749
		              +EN TG+ TDWRGY V    + Y ENRVAL+++  +  N++L+N V N+VPTRGA+V
		Sbjct: 728 DAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLA-DNVDLDNAVANVVPTRGAIV 786
		
		Query: 750 KAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYLSGMPEKGEF 809
		           +AEF   VG ++L  +   N KP+ FGAM T   E+   +GIV DNG++YLSGMP  G+ 
		Sbjct: 787 RAEFKARVGIKLLMTLTH-NNKPLPFGAMVT--SESSQSSGIVADNGQVYLSGMPLAGKV 843
		
		Query: 810 LLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR 844
		            + WG+  +  C A Y +  +     L Q+ A CR
		Sbjct: 844 QVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		
		
	4582#JEONG1266_24090	FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein...	32	0.002
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein
		           signature.
		          Length = 167
		
		 Score = 32.0 bits (72), Expect = 0.002
		 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
		
		Query: 189 LYANISSTTTRGEAIAKVRISGSLTAPQSCQINAGQVIYFDFDTIPASEFSSTAGQAITS 248
		           L+ ++  T+    A  ++ I G++  P  C IN GQ I  DF  I      ++ G+    
		Sbjct: 6   LFISLLLTSVAVLADVQINIRGNVYIP-PCTINNGQNIVVDFGNINPEHVDNSRGE---- 60
		
		Query: 249 RKITKTVSIECTGMGYERTQKVDASFTGTNRSSDDTMVATDNADVGIKIYNKSNAEVSVN 308
		             +TK +SI C         KV  +  G  +   + ++AT+    GI +Y        + 
		Sbjct: 61  --VTKNISISCPYKSGSLWIKVTGNTMGVGQ---NNVLATNITHFGIALYQGKGMSTPLT 115
		
		Query: 309 NGKLPADMGNTTI-FGRKNGSVTFSAAPASFTGARPQPGVFNATATLTI 356
		            G    +    T        + TF++ P          G F  TA++++
		Sbjct: 116 LGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGILNGGDFRTTASMSM 164
		
		
	4600#JEONG1266_24180	TCRTETA#Tetracycline resistance protein signature.	54	3e-10
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 54.4 bits (131), Expect = 3e-10
		 Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 10/257 (3%)
		
		Query: 2   SRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAML----F 57
		           +R LI   + V L   GI + +  LP +  DL  S   +   + + LA  A         
		Sbjct: 4   NRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSN-DVTAHYGILLALYALMQFACAPV 62
		
		Query: 58  AGKVADRSGRKPVAIPGAALFIITSVFCSLAETSTLFLAGRFLQGLGAGCCYVVAFAILR 117
		            G ++DR GR+PV +   A   +     + A    +   GR + G+  G    VA A + 
		Sbjct: 63  LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIA 121
		
		Query: 118 DTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFWTMAIMGIAVLMLSLFI 177
		           D  D   RA+    ++       V  PVLG L M  F   + F+  A +     +   F+
		Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGL-MGGFSPHAPFFAAAALNGLNFLTGCFL 180
		
		Query: 178 LKETRPAAPAASDKSRENSESLLNRFFLSRVVITTLSVSVILTFVNTSPVLLMEIMGFER 237
		           L E+         +   N  +         VV   ++V  I+  V   P  L  I G +R
		Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240
		
		Query: 238 GEYATIMALTAGVSMTV 254
		             +        G+S+  
		Sbjct: 241 FHWDATT---IGISLAA 254
		
		
	4605#JEONG1266_24205	FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signa...	25	0.018
		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE
		          signature.
		          Length = 103
		
		 Score = 25.4 bits (55), Expect = 0.018
		 Identities = 9/44 (20%), Positives = 16/44 (36%)
		
		Query: 19 LKDVMMQLEAKNNEGKYVISKANGNPVFKELFWKAIDEFNFPQE 62
		          ++ V+ QL+A     +   S       F      A+D  +  Q 
		Sbjct: 6  IEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQT 49
		
		
	4607#JEONG1266_24215	60KDINNERMP#60kDa inner membrane protein signature.	874	0.0
		>60KDINNERMP#60kDa inner membrane protein signature.
		          Length = 548
		
		 Score =  874 bits (2260), Expect = 0.0
		 Identities = 547/548 (99%), Positives = 548/548 (100%)
		
		Query: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL 60
		           MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL
		Sbjct: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKL 60
		
		Query: 61  ISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP 120
		           ISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP
		Sbjct: 61  ISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP 120
		
		Query: 121 DNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNV 180
		           DNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNV
		Sbjct: 121 DNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVNVNYNV 180
		
		Query: 181 QNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD 240
		           QNAGEKPLEIS+FGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD
		Sbjct: 181 QNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIAD 240
		
		Query: 241 NENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT 300
		           NENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT
		Sbjct: 241 NENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQT 300
		
		Query: 301 GAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII 360
		           GAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII
		Sbjct: 301 GAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIII 360
		
		Query: 361 ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPL 420
		           ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPL
		Sbjct: 361 ITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPL 420
		
		Query: 421 GGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQK 480
		           GGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQK
		Sbjct: 421 GGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQK 480
		
		Query: 481 MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL 540
		           MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL
		Sbjct: 481 MSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGL 540
		
		Query: 541 HSREKKKS 548
		           HSREKKKS
		Sbjct: 541 HSREKKKS 548
		
		
JEONG1266_24355	JEONG1266_24390	Y	Y	N	JEONG1266_24280	JEONG1266_24475
	JEONG1266_24355	1	17	3.158974	multidrug resistance protein D
	JEONG1266_24360	1	17	1.626424	type I toxin-antitoxin system toxin TisB
	JEONG1266_24365	1	17	-1.634638	hypothetical protein
	JEONG1266_24370	1	20	-3.551243	hypothetical protein
	JEONG1266_24375	0	22	-4.862578	leader peptide IlvB
	JEONG1266_24380	0	25	-7.947358	acetolactate synthase, large subunit,
	JEONG1266_24385	1	34	-11.650398	acetolactate synthase isozyme 1 small subunit
	JEONG1266_24390	0	26	-6.552461	hypothetical protein
	4635#JEONG1266_24355	TCRTETB#Tetracycline resistance protein TetB signature.	60	6e-12
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 59.9 bits (145), Expect = 6e-12
		 Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
		
		Query: 5   RNINLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYG 64
		           R+  +L+ L +L     + + +   ++ D+A D N    +   V  A++LT+ +    YG
		Sbjct: 11  RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70
		
		Query: 65  PISDRVGRRPVILVGMSIFMLATLVA-VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD 123
		            +SD++G + ++L G+ I    +++  V  S  ++LI A  +QG G      +   +   
		Sbjct: 71  KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130
		
		Query: 124 LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM 183
		              +     A  L+   + +   + P IGG++    +W    L  ++    V F M    
		Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK 190
		
		Query: 184 PETR 187
		            E R
		Sbjct: 191 KEVR 194
		
		
JEONG1266_24435	JEONG1266_24735	Y	Y	Y	JEONG1266_24360	JEONG1266_24555
	JEONG1266_24435	0	22	-3.024142	hypothetical protein
	JEONG1266_24440	2	21	-2.874024	transcriptional regulator
	JEONG1266_24445	2	21	-3.783520	addiction module toxin RelE
	JEONG1266_24450	0	20	-3.760431	hypothetical protein
	JEONG1266_24455	-1	20	-2.810034	ribonucleoside transporter
	JEONG1266_24460	-1	20	-2.500693	hypothetical protein
	JEONG1266_24465	-1	23	-4.918340	hypothetical protein
	JEONG1266_24470	0	26	-7.270759	hypothetical protein
	JEONG1266_24475	0	32	-8.218790	hypothetical protein
	JEONG1266_24480	2	35	-9.159755	hypothetical protein
	JEONG1266_24485	4	43	-11.948470	esterase-like activity of phytase
	JEONG1266_24490	5	45	-13.155903	secretion protein EspG
	JEONG1266_24495	6	48	-14.593585	hypothetical protein
	JEONG1266_24500	6	51	-16.080971	EscE/YscE/SsaE family type III secretion system
	JEONG1266_24505	9	50	-18.901790	hypothetical protein
	JEONG1266_24510	9	52	-19.519203	hypothetical protein
	JEONG1266_24515	9	53	-19.169792	hypothetical protein
	JEONG1266_24520	9	51	-18.667567	EscR/YscR/HrcR family type III secretion system
	JEONG1266_24525	7	51	-18.997591	EscS/YscS/HrcS family type III secretion system
	JEONG1266_24530	7	50	-18.246511	EscT/YscT/HrcT family type III secretion system
	JEONG1266_24535	7	50	-17.829939	EscU/YscU/HrcU family type III secretion system
	JEONG1266_24540	7	50	-17.934327	lytic transglycosylase
	JEONG1266_24545	5	47	-16.554021	negative regulator GrlR
	JEONG1266_24550	4	47	-16.161079	LEE type III secretion system transcriptional
	JEONG1266_24555	4	44	-15.119434	CesD/SycD/LcrH family type III secretion system
	JEONG1266_24560	2	44	-14.233277	EscC/YscC/HrcC family type III secretion system
	JEONG1266_24565	3	44	-13.247026	SepD
	JEONG1266_24570	2	44	-13.718077	EscJ/YscJ/HrcJ family type III secretion inner
	JEONG1266_24575	2	43	-12.198615	EscI/YscI/HrpB family type III secretion system
	JEONG1266_24580	1	40	-10.530469	type III secretion system protein SepZ
	JEONG1266_24585	2	41	-10.418169	T3SS regulator Mpc
	JEONG1266_24590	3	42	-11.258983	EscV/YscV/HrcV family type III secretion system
	JEONG1266_24595	2	43	-12.185466	EscN/YscN/HrcN family type III secretion system
	JEONG1266_24600	3	42	-11.483864	type III secretion protein
	JEONG1266_24605	3	45	-12.403263	hypothetical protein
	JEONG1266_24610	5	45	-13.790173	type III secretion system protein SepQ
	JEONG1266_24615	5	45	-9.419536	hypothetical protein
	JEONG1266_24620	5	44	-9.282442	molecular chaperone CesF
	JEONG1266_24625	3	39	-8.447425	T3SS effector protein Map
	JEONG1266_24630	2	36	-8.929491	translocated intimin receptor Tir
	JEONG1266_24635	3	37	-9.468035	Tir chaperone
	JEONG1266_24640	3	39	-9.738513	Intimin
	JEONG1266_24645	2	37	-10.583851	EscD/YscD/HrpQ family type III secretion system
	JEONG1266_24650	2	37	-9.413601	SepL/TyeA/HrpJ family type III secretion system
	JEONG1266_24655	3	38	-9.894504	secretion protein EspA
	JEONG1266_24660	4	41	-9.504691	secretion protein EspD
	JEONG1266_24665	1	40	-7.801786	eaeB
	JEONG1266_24670	3	39	-5.072020	hypothetical protein
	JEONG1266_24675	3	40	-5.217518	EscF/YscF/HrpA family type III secretion system
	JEONG1266_24680	1	23	-0.080063	EscG/YscG/SsaH family type III secretion system
	JEONG1266_24685	1	21	2.142143	secretion protein EspF
	JEONG1266_24690	1	23	2.998768	hypothetical protein
	JEONG1266_24695	1	23	4.109964	transposase
	JEONG1266_24700	2	25	4.419262	isocitrate lyase
	JEONG1266_24705	4	26	4.692765	transposase
	JEONG1266_24710	5	28	1.695474	methyltransferase
	JEONG1266_24715	5	23	0.959726	hypothetical protein
	JEONG1266_24720	5	25	1.219730	hypothetical protein
	JEONG1266_24725	4	24	1.548262	hypothetical protein
	JEONG1266_24730	3	24	1.613071	toxin
	JEONG1266_24735	3	22	1.561143	structural protein
	4655#JEONG1266_24460	TCRTETB#Tetracycline resistance protein TetB signature.	34	8e-04
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 34.1 bits (78), Expect = 8e-04
		 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
		
		Query: 43  LTPMAQDLGISEG-----VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97
		           L  +A D                +T +   A++  L        +D+  +  L    + +
		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL--------SDQLGIKRLLLFGIII 88
		
		Query: 98  SCL--LVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV 153
		           +C   ++ F     FSLL++ R   G     F A+   +  R +P     KA  +I   V
		Sbjct: 89  NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIV 148
		
		Query: 154 SIALVIAAPLGCFLGELIGWRNVFNAAAAMGVLCIFWIIKSLP 196
		           ++   +   +G  +   I W  +        ++ + +++K L 
		Sbjct: 149 AMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLK 190
		
		
	4662#JEONG1266_24500	PF06872#EspG protein	724	0.0
		>PF06872#EspG protein
		          Length = 398
		
		 Score =  724 bits (1871), Expect = 0.0
		 Identities = 293/397 (73%), Positives = 338/397 (85%)
		
		Query: 1   MILVAKLFITNQIGESLMINGLNNDSASLVLDAAMKVNSGFKKSWDEMSCAEKLFKVLSF 60
		           MILV K+F+ ++   + M+NGLNN+SASLVLDA +K+NS +KK W+EM+CAEKL K+L+ 
		Sbjct: 1   MILVIKIFVIDETERAFMLNGLNNNSASLVLDATIKINSDYKKPWNEMTCAEKLLKILTL 60
		
		Query: 61  GLWNPTYSRSERQSFQELLTVLEPVYPLPNELGRVSARFSDGSSLRISVTNSELVEAEIR 120
		           GLWNP YS+ ERQ FQ LLTVLEPV P  NELGRV A+FSDGSSLRISVTNSEL+EAEI 
		Sbjct: 61  GLWNPKYSQDERQQFQGLLTVLEPVSPAHNELGRVYAKFSDGSSLRISVTNSELIEAEIH 120
		
		Query: 121 TANNEKITVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMDLTDTTSMRNLLGFTSKLS 180
		           T NNEK  VLLE+NEQNRLLQSLPI+RHMPYIQVH  L + +LTD  SM  LL FTSKLS
		Sbjct: 121 TPNNEKFLVLLEANEQNRLLQSLPINRHMPYIQVHHTLPQEELTDLLSMHKLLSFTSKLS 180
		
		Query: 181 TTLIPHNAQTDPLSGPTPFSSIFMDTCRGLGNAKLSLNGVDIPANAQKLLRDALGLKDTH 240
		            TLIPHN QTDPLSG TPFS++FMDT RGLGN+KLSLNGVDIPA+AQKLLR+ LGLKDT+
		Sbjct: 181 ATLIPHNNQTDPLSGLTPFSTVFMDTSRGLGNSKLSLNGVDIPADAQKLLRNTLGLKDTN 240
		
		Query: 241 SSPTRNVIDHGISRHDAEQIARESSGSDKQKAEVVEFLCHPEAATAICSAFYQSFNVPAL 300
		           SSP  NVI +GI RH AEQI +ESS +++QKA VV+FLC PEA TAICSAFYQSFNVPAL
		Sbjct: 241 SSPDLNVIRNGIPRHYAEQIVKESSSTNEQKAAVVDFLCQPEAPTAICSAFYQSFNVPAL 300
		
		Query: 301 TLTHERISKASEYNAERSLDTPNACINISISQSSDGNIYVTSHTGVLIMAPEDRPNEMGM 360
		            LTH RIS+AS YNA+RSLD PNACINISI+QSS+G+I+VTSHTGVLIMAPEDRPN++GM
		Sbjct: 301 MLTHVRISQASAYNAQRSLDMPNACINISITQSSEGSIHVTSHTGVLIMAPEDRPNQLGM 360
		
		Query: 361 LTNRTSYEVPQGVKCIIDEMVSALQPRYAASETYLQN 397
		           LTNRTSYEVP GVKC  +EM   L+ +YA+SETYL N
		Sbjct: 361 LTNRTSYEVPPGVKCEPNEMARMLKAKYASSETYLNN 397
		
		
	4668#JEONG1266_24530	TYPE3IMPPROT#Type III secretion system inner membrane P protein ...	224	8e-77
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein
		           family signature.
		          Length = 224
		
		 Score =  224 bits (573), Expect = 8e-77
		 Identities = 89/212 (41%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
		
		Query: 8   IFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIM 67
		           I LI +    +LLP  +  GT F+K SIV  +++NALG+QQ+P NM L  V+L+L+MF+M
		Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
		
		Query: 68  SPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLG 127
		            PI+         E + + D     K  ++ L  YR +L K ++++ V+FFE A  K+  
		Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
		
		Query: 128 NETI---------LKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 178
		            E           ++K S+F LLPA+ + ++++AFKIGF LYLPF+ +DL++S++LLALG
		Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
		
		Query: 179 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 210
		           MMM+SPVTIS P K++LF+ + GW  L + L+
		Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLI 216
		
		
	4669#JEONG1266_24535	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	69	2e-19
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 69.0 bits (169), Expect = 2e-19
		 Identities = 25/78 (32%), Positives = 45/78 (57%)
		
		Query: 7  VQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFATLALTY 66
		          V    +  +++ ILS    I A++IG+++ L Q +TQLQ+QTLPF +K++ V   L L  
		Sbjct: 5  VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64
		
		Query: 67 HWMGTTIINFSSIIFEMI 84
		           W G  ++++   +  + 
		Sbjct: 65 GWYGEVLLSYGRQVIFLA 82
		
		
	4670#JEONG1266_24540	TYPE3IMRPROT#Type III secretion system inner membrane R protein ...	155	1e-48
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein
		           family signature.
		          Length = 261
		
		 Score =  155 bits (394), Expect = 1e-48
		 Identities = 46/230 (20%), Positives = 102/230 (44%), Gaps = 4/230 (1%)
		
		Query: 11  SFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKLPSGIFQLTG 70
		            F+ +LR L +    PI S   +     R  + +A  +   +     +  +P   F    
		Sbjct: 16  YFWPLLRVLALISTAPILSERSVPK---RVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72
		
		Query: 71  IALKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGVILYQF 130
		           +A+++I IG  +G +    F A+  AG+II    G + ++  +P+   +  +   I+   
		Sbjct: 73  LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132
		
		Query: 131 ISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLSFSVPMI 190
		             ++F+   G   ++  L  ++  LP+  +   + A +    +    F+   L  ++P+I
		Sbjct: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL-NGLMLALPLI 191
		
		Query: 191 IGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240
		             +   ++  G LN+ APQL++F +  P+   + I ++  ++ +   F  
		Sbjct: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241
		
		
	4671#JEONG1266_24545	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	376	e-132
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score =  376 bits (967), Expect = e-132
		 Identities = 123/339 (36%), Positives = 195/339 (57%), Gaps = 4/339 (1%)
		
		Query: 2   SEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMS--FFVDIVGLVNTT 59
		            EKTE+PTPKK+RD +KKG V KS+EV++    LI+     L G+S  +F     L+   
		Sbjct: 3   GEKTEQPTPKKIRDARKKGQVAKSKEVVSTA--LIVALSAMLMGLSDYYFEHFSKLMLIP 60
		
		Query: 60  IDSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119
		            +    PF  A+  ++  VL  F     P+  +  +  + + V Q GF+ + E IKP  +
		Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120
		
		Query: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179
		           KI+     K IFS+KS+ E LKS+ K+V++ ++ + +                     ++
		Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180
		
		Query: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
		              +  L      G+++ S+ D+ F+ ++ +K++KMSKDE+KRE K+ +G+PEIK +RR+
		Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240
		
		Query: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
		            H EIQS ++  N+K+S+V+V NPTHIAI + YK GETPLPLV     DA+   + K+AE
		Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300
		
		Query: 300 LYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIR 338
		              +P+++ IPLAR LY +     YI  +  E  A+++R
		Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 339
		
		
	4672#JEONG1266_24550	OMPTIN#Omptin serine protease signature.	26	0.048
		>OMPTIN#Omptin serine protease signature.
		          Length = 317
		
		 Score = 26.5 bits (58), Expect = 0.048
		 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
		
		Query: 115 AYNAGYFNTPNAVELRRQYAMKIYKTYNKLKNNEQIID 152
		           A NAGY+ TPNA    + Y    +      K N  + D
		Sbjct: 254 AVNAGYYVTPNA----KVYVEGAWNRVTNKKGNTSLYD 287
		
		
	4675#JEONG1266_24565	SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD cha...	139	4e-45
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD
		           chaperone signature.
		          Length = 168
		
		 Score =  139 bits (352), Expect = 4e-45
		 Identities = 33/142 (23%), Positives = 63/142 (44%)
		
		Query: 6   SSLEDIYDFYQDGGTLASLTNLTQQDLNDLHSYAYTAYQSGDVITARNLFHLLTYLEHWN 65
		                +  F + GGT+A L  ++   L  L+S A+  YQSG    A  +F  L  L+H++
		Sbjct: 10  EYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69
		
		Query: 66  YDYTLSLGLCHQRLSNHEDAQLCFARCATLVMQDPRASYYSGISYLLVGNKKMAKKAFKA 125
		             + L LG C Q +  ++ A   ++  A + +++PR  +++    L  G    A+     
		Sbjct: 70  SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129
		
		Query: 126 CLMWCNEKEKYTTYKENIKKLL 147
		                 +K ++      +  +L
		Sbjct: 130 AQELIADKTEFKELSTRVSSML 151
		
		
	4676#JEONG1266_24570	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	559	0.0
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		           family signature.
		          Length = 607
		
		 Score =  559 bits (1441), Expect = 0.0
		 Identities = 153/494 (30%), Positives = 262/494 (53%), Gaps = 24/494 (4%)
		
		Query: 30  KSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHL 89
		              Y  + K   +R +L DF ANY   V +S  +ND  SG+ +++ P   L+ ++ LY+L
		Sbjct: 33  PIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNL 92
		
		Query: 90  TWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEV 149
		            WYYD N+LYI+K +E++  +I     +   L + L     + +     R   +   + V
		Sbjct: 93  VWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQR-SGIWEPRFGWRPDASNRLVYV 151
		
		Query: 150 RGVPECIKYITSLSESLDKEAQSKAKNKD--VVKVFKLNYASATDITYKYRDQNVVVPGV 207
		            G P  ++ +   + +L+++ Q +++      +++F L YASA+D T  YRD  V  PGV
		Sbjct: 152 SGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGV 211
		
		Query: 208 VSILKTMASNGSLP--STGKGAVERSGNLFDNSVTISADPRLNAVVVKDREITMDIYQQL 265
		            +IL+ + S+ ++   +     + ++         + ADP LNA++V+D    M +YQ+L
		Sbjct: 212 ATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPMYQRL 271
		
		Query: 266 ISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIA--------FNSSTAQA 317
		           I  LD    +IE+++SI+D++A+ L +LGV+W   +  G              N ++  A
		Sbjct: 272 IHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIASNGA 331
		
		Query: 318 NISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVA 377
		             S          + RVN L+    A+++S+P+++T  N QA++D + T+Y KV+G++VA
		Sbjct: 332 LGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVA 391
		
		Query: 378 SLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPE 437
		            L+ IT GT+LR+TPR+L     S        + L L I+DGNQ  N S  +     +P 
		Sbjct: 392 ELKGITYGTMLRMTPRVLTQGDKS-------EISLNLHIEDGNQKPNSSGIE----GIPT 440
		
		Query: 438 VQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVR 497
		           +  + + T A +  G+SL++GG  +D+ S +   +PLL DIP IG+LF    +     VR
		Sbjct: 441 ISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVR 500
		
		Query: 498 LFLIKATPIKSASS 511
		           LF+I+   I    +
		Sbjct: 501 LFIIEPRIIDEGIA 514
		
		
	4678#JEONG1266_24580	FLGMRINGFLIF#Flagellar M-ring protein signature.	56	1e-11
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 55.7 bits (134), Expect = 1e-11
		 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
		
		Query: 22  EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKK 81
		             L++ L++++   + A L     N+           + V  +        L   G PK 
		Sbjct: 51  RTLFSNLSDQDGGAIVAQLTQM--NIPYRFANGSG-AIEVPADKVHELRLRLAQQGLPKG 107
		
		Query: 82  KFADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN----- 136
		                E +    +   S   E        E ++ R +  +  V    V L +        
		Sbjct: 108 GAVGFE-LLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVR 166
		
		Query: 137 ESQPSSAAVLVISSPEVNLAPSVIQ-IKNLVKNSVDDLKLENISVV 181
		           E +  SA+V V   P   L    I  + +LV ++V  L   N+++V
		Sbjct: 167 EQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLV 212
		
		
	4688#JEONG1266_24630	PF06704#DspF/AvrF protein	36	6e-06
		>PF06704#DspF/AvrF protein
		          Length = 129
		
		 Score = 36.4 bits (84), Expect = 6e-06
		 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
		
		Query: 3   EKFRTDLAHTFGIALEEQTDVLSFHDNDGHEW-ILECASQSEILFFYCYLLNSESIQINS 61
		            +    L    G +L  Q  V + +D+  +E  ++E    SE++ F+C +  S     + 
		Sbjct: 9   SRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGRSPDRAADL 68
		
		Query: 62  ILEMNSNRELLGMF--FLSLKDDNILLNIAFPADKIDITEFANLMENGYLLKNEIIRSL 118
		              ++ N ++  M   + ++   ++ L        +D  +F +    G++++    R+L
		Sbjct: 69  QKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTA-RGFIVQAREARAL 126
		
		
	4690#JEONG1266_24640	TRNSINTIMINR#Translocated intimin receptor (Tir) signature.	731	0.0
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.
		          Length = 549
		
		 Score =  731 bits (1887), Expect = 0.0
		 Identities = 328/566 (57%), Positives = 390/566 (68%), Gaps = 25/566 (4%)
		
		Query: 1   MPIGNLGHNPNVNNSIPPAPPLPSQTDGA--GGRGQLINSTGPLGSRALFTPVRNSMADS 58
		           MPIGNLG+N N N+ IPPAPPLPSQTDGA  GG G LI+STG LGSR+LF+P+RNSMADS
		Sbjct: 1   MPIGNLGNNVNGNHLIPPAPPLPSQTDGAARGGTGHLISSTGALGSRSLFSPLRNSMADS 60
		
		Query: 59  GDNRASDVPGLPVNPMRLAA--SEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDG 116
		            D+R  D+PGLP NP RLAA  SE  L  GFEVLHD GPLD LN QIG S FRVE Q DG
		Sbjct: 61  VDSR--DIPGLPTNPSRLAAATSETCLLGGFEVLHDKGPLDILNTQIGPSAFRVEVQADG 118
		
		Query: 117 KHIAVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEAR 176
		            H A+G++NG+E SV LS QE++ LQSID EGK++FVFTGGRGG+GH MVTVASDI EAR
		Sbjct: 119 THAAIGEKNGLEVSVTLSPQEWSSLQSIDTEGKNRFVFTGGRGGSGHPMVTVASDIAEAR 178
		
		Query: 177 QRILELLEPKGTGESK-GAGESKGVGELRESNSGAENTTETQTSTSTSSLRSDPKLWLAL 235
		            +IL  L+P   G  +    +++ VG    S       +ET TST+ SS+RSDPK W+++
		Sbjct: 179 TKILAKLDPDNHGGRQPKDVDTRSVGVGSASGIDDGVVSETHTSTTNSSVRSDPKFWVSV 238
		
		Query: 236 GTVATGLIGLAATGIVQALALTPEPDSPTTTDPDAAASATETATRDQLTKEAFQNPDNQK 295
		           G +A GL GLAATGI QALALTPEPD PTTTDPD AA+A E+AT+DQLT+EAF+NP+NQK
		Sbjct: 239 GAIAAGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQLTQEAFKNPENQK 298
		
		Query: 296 VNIDELGNAIPSGVLKDDVVANIEEQAKAAGEEAKQQAIENNAQAQKKYDEQQAKRQEEL 355
		           VNID  GNAIPSG LKDD+V  I +QAK AGE A+QQA+E+NAQAQ++Y++Q A+RQEEL
		Sbjct: 299 VNIDANGNAIPSGELKDDIVEQIAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEEL 358
		
		Query: 356 KVSSGAGYGLSGALILGGGIGVAVTAALHRKNQPVEQTTTTTTTTTTTSARTVENKPANN 415
		           ++SSG GYGLS ALI+ GGIG  VT ALHR+NQP EQTTTTTT        TV  +    
		Sbjct: 359 QLSSGIGYGLSSALIVAGGIGAGVTTALHRRNQPAEQTTTTTT-------HTVVQQQTGG 411
		
		Query: 416 TPAQGNVDTPGSEDTMESRRSSMASTSSTFFDTSSIGTVQNPYADV---KTSLHDSQVPT 472
		            P       P        RR S  S +ST +  SS   V NPYA+V   + SL   Q   
		Sbjct: 412 IPQHKVALMPQERRRFSDRRDSQGSVASTHWSDSS-SEVVNPYAEVGGARNSLSAHQPEE 470
		
		Query: 473 SNSNTSVQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDM 532
		              +    + G      YS IQ+        G RL+G P  GIQSTYA LA SGGLR  M
		Sbjct: 471 HIYDEVAADPG------YSVIQNFSGSGPVTG-RLIGTPGQGIQSTYALLANSGGLRLGM 523
		
		Query: 533 GGLTGGSNSAVNTSNNPPAPGSHRFV 558
		           GGLT G  +AV++ N  P PG  RFV
		Sbjct: 524 GGLTSGGETAVSSVNAAPTPGPVRFV 549
		
		
	4691#JEONG1266_24645	PF05932#Tir chaperone protein (CesT)	122	4e-39
		>PF05932#Tir chaperone protein (CesT)
		          Length = 127
		
		 Score =  122 bits (309), Expect = 4e-39
		 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
		
		Query: 1   MSSRS-ELLLEKFAEKIGIGSISFNENRLCSFAIDEIYYISLS-DANDEYMMIYGVCGKF 58
		           MS+   + LL+ F+  + +  + F+++  C+  ID  + ++LS D   E +++ G+    
		Sbjct: 1   MSNLFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPH 60
		
		Query: 59  PTDNSNFALEILNANLWFAENGGPYLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVK 118
		                     +L   L    N GP L  +  +         P +  +   L+ E+  +++
		Sbjct: 61  KD---IPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLE 117
		
		Query: 119 SMENL 123
		            M   
		Sbjct: 118 WMRGW 122
		
		
	4692#JEONG1266_24650	INTIMIN#Intimin signature.	1459	0.0
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 1459 bits (3777), Expect = 0.0
		 Identities = 780/942 (82%), Positives = 837/942 (88%), Gaps = 11/942 (1%)
		
		Query: 1   MITHGCYTRTRHKHKLKKTLIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ 60
		           MITHG Y RTRHKHKLKKT IMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTH+SYQ
		Sbjct: 1   MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHNSYQ 60
		
		Query: 61  NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE 120
		           NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKA PGQQIILPLKKLPFE
		Sbjct: 61  NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAEPGQQIILPLKKLPFE 120
		
		Query: 121 YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR 180
		           YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR
		Sbjct: 121 YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR 180
		
		Query: 181 SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM 240
		           SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM
		Sbjct: 181 SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM 240
		
		Query: 241 LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF 300
		           LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF
		Sbjct: 241 LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF 300
		
		Query: 301 KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL 360
		           KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKL+YEQYYGDNVAL
		Sbjct: 301 KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL 360
		
		Query: 361 FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE 420
		           FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDK WSQQIE
		Sbjct: 361 FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIE 420
		
		Query: 421 PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY 480
		           PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTE STQKIQLIVKSKY
		Sbjct: 421 PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKY 480
		
		Query: 481 GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN 540
		           GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
		Sbjct: 481 GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN 540
		
		Query: 541 NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI 600
		           NV LTITVLSNGQVVDQVGVTDFTADKTSAKAD  + ITYTATVKKNGVAQANVPVSFNI
		Sbjct: 541 NVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNI 600
		
		Query: 601 VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI 660
		           VSGTA L ANSA T+ +GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
		Sbjct: 601 VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI 660
		
		Query: 661 TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR 720
		           TEIKADKTTAVANG+DAI YTVKVMK  +PV+NQ VTF+T  G  +    +   T  +G 
		Sbjct: 661 TEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLS---NSTEKTDTNGY 717
		
		Query: 721 ATITLTSSSAGKATVSATVSDGA-EVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL 778
		           A +TLTS++ GK+ VSA VSD A +VKA EV FF  L ID   ++I+G  V+G+LP +WL
		Sbjct: 718 AKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWL 777
		
		Query: 779 QYGQFKLKASGGDGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIKATSGDKQTVSYTIK 837
		           QYGQ  LKASGG+G Y+W S N +IA+VDA SG+VTL  KG+  I   S D QT +YTI 
		Sbjct: 778 QYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA 837
		
		Query: 838 APSYMI--KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSIT 892
		            P+ +I   + K+  Y DA++ CKN    LPS+Q  L +++ +WGAANKY +Y S  +I 
		Sbjct: 838 TPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTII 897
		
		Query: 893 AWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCVE 934
		           +W++QT+ + +SGV+STY+L+ QNPL  +  +  N YA CV+
		Sbjct: 898 SWVQQTAQDAKSGVASTYDLVKQNPLNNIKASESNAYATCVK 939
		
		
	4694#JEONG1266_24660	PF07201#Hypersensitivity response secretion protein HrpJ	28	0.047
		>PF07201#Hypersensitivity response secretion protein HrpJ
		          Length = 293
		
		 Score = 28.3 bits (63), Expect = 0.047
		 Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 23/225 (10%)
		
		Query: 39  SPLINLQNELAMITSSSLSETIEGLSLGYRK---GSARKEEEGSTIEKLLNDMQELLTLT 95
		             + ++  E+        SE  E LSL  RK     AR  +    + + L+ + EL    
		Sbjct: 47  QSIADMAEEVTF----VFSERKE-LSLDKRKLSDSQARVSDVEEQVNQYLSKVPEL---E 98
		
		Query: 96  DSDKIKELS--LKNSGL--LEQHDPTLAMFGNMPKGEIVALISSLLQSK--FVKIELKKK 149
		               + EL   L NS    L Q    L      P  +   L       K       L   
		Sbjct: 99  QKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHL 158
		
		Query: 150 YARLLLDLLGEDDWELAL-----LSWLGVGELNQEGIQKIKKLYEKAKDEDSENGASLLD 204
		             + L+ +  E    + L            +     +Q ++  Y  A     +   ++  
		Sbjct: 159 VEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDAV-MGYQGIYAIWS 217
		
		Query: 205 WFMEIKDLPEREKHLKVIIRALSFDLSYMSSFEDKVKTSSIISDL 249
		              +     + +  +  + +ALS DL    S   + K   +ISDL
		Sbjct: 218 DLQKRFPNGDIDSVILFLQKALSADLQSQQSGSGREKLGIVISDL 262
		
		
	4696#JEONG1266_24670	BACINVASINB#Salmonella/Shigella invasin protein B signature.	30	0.020
		>BACINVASINB#Salmonella/Shigella invasin protein B signature.
		          Length = 593
		
		 Score = 29.7 bits (66), Expect = 0.020
		 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
		
		Query: 112 MMMVTLLSLDTSAQKVSSLKNSNEIY---MDGQTKALENKTQEYKKQLEEQQKAEEKSQK 168
		           M+M   + +        SL+N   ++    +G+   +E K+ E++   EE +KAEE ++ 
		Sbjct: 258 MLMAMFIEI-VGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQ---EETRKAEETNRI 313
		
		Query: 169 SKIVGQVFGWLGVALTAVAAVFNPALWAVVAIGATAMALQTA 210
		              +G+V G L   ++ VAAVF     A +A+ A  +A+  A
		Sbjct: 314 MGCIGKVLGALLTIVSVVAAVFTGG--ASLALAAVGLAVMVA 353
		
		
JEONG1266_24890	JEONG1266_24935	Y	Y	N	JEONG1266_24815	JEONG1266_25015
	JEONG1266_24890	1	19	-5.007527	putative lipopolysaccharide heptosyltransferase
	JEONG1266_24895	1	25	-7.399054	glucosyltransferase I RfaG
	JEONG1266_24900	1	34	-12.006367	lipopolysaccharide core heptose(I) kinase RfaP
	JEONG1266_24905	1	40	-13.842474	lipopolysaccharide 1,3-galactosyltransferase
	JEONG1266_24910	3	45	-16.336558	lipopolysaccharide biosynthesis protein
	JEONG1266_24915	3	45	-15.474250	glucosyltransferase
	JEONG1266_24920	2	36	-11.631582	lipopolysaccharide
	JEONG1266_24925	1	26	-8.930164	ligase
	JEONG1266_24930	0	24	-7.742297	lipopolysaccharide heptosyltransferase 1
	JEONG1266_24935	-1	15	-4.465753	ADP-heptose--LPS heptosyltransferase
	4745#JEONG1266_24915	RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family...	33	0.003
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family
		           signature.
		          Length = 1024
		
		 Score = 32.6 bits (74), Expect = 0.003
		 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
		
		Query: 60  HVFTDYISDKDKLYFSDL-------AKQYNSRINIYVINCDKLKSLPSTKNWTYATYFRF 112
		           H+  D    +DKL  +D+        ++ N  I         + S+      T+  +F  
		Sbjct: 860 HIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEG--NVLSIGHKNGITFRNWFEK 917
		
		Query: 113 IIADYFYHKHEKILYLDADIACKGSIKELLDYQFSTNEIAAVVAERDVEWWQNRASV 169
		              D   H+ E+I      I    S+K+ L+YQ   N  A+ V   D   + ++  +
		Sbjct: 918 ESGDISNHEIEQIFDKSGRIITPDSLKKALEYQ-QRNNKASYVYGNDALAYGSQGDL 973
		
		
JEONG1266_25405	JEONG1266_25435	Y	Y	N	JEONG1266_25325	JEONG1266_25525
	JEONG1266_25405	-3	19	3.187440	cellulose synthase operon protein YhjQ
	JEONG1266_25410	-3	19	4.212959	UDP-forming cellulose synthase catalytic
	JEONG1266_25415	-2	17	3.609352	cellulose synthase regulator BcsB
	JEONG1266_25420	-3	18	3.418250	endo-1,4-D-glucanase
	JEONG1266_25425	-2	17	3.216899	cellulose biosynthesis protein BcsC
	JEONG1266_25430	-2	15	3.251511	biofilm formation regulator HmsP
	JEONG1266_25435	-2	15	3.128899	C4-dicarboxylate transporter DctA
	4846#JEONG1266_25435	SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD cha...	33	0.004
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD
		           chaperone signature.
		          Length = 168
		
		 Score = 32.6 bits (74), Expect = 0.004
		 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
		
		Query: 37  LGEATHREDLVQQSLY---RLELIDPNNPDVVAARFRSLLRQGDIDGAQKQLDRLSQLAP 93
		           LG           +++      ++D   P         LL++G++  A+  L    +L  
		Sbjct: 76  LGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIA 135
		
		Query: 94  SSNAYKS 100
		               +K 
		Sbjct: 136 DKTEFKE 142
		
		
JEONG1266_25590	JEONG1266_25635	Y	N	N	JEONG1266_25515	JEONG1266_25715
	JEONG1266_25590	-1	18	-6.350389	hemin transporter
	JEONG1266_25595	-1	16	-5.557603	helix-turn-helix transcriptional regulator
	JEONG1266_25600	-2	18	-5.344968	hypothetical protein
	JEONG1266_25605	-2	18	-5.795342	hypothetical protein
	JEONG1266_25610	-1	18	-4.770386	arsenate reductase (glutaredoxin)
	JEONG1266_25615	-2	18	-4.557858	arsenic transporter
	JEONG1266_25620	-1	20	1.357358	transcriptional regulator
	JEONG1266_25625	-2	18	1.829066	hypothetical protein
	JEONG1266_25630	-1	23	2.182346	hypothetical protein
	JEONG1266_25635	-1	23	3.180134	glutathione-disulfide reductase
JEONG1266_25680	JEONG1266_25935	Y	Y	N	JEONG1266_25605	JEONG1266_25805
	JEONG1266_25680	-1	18	-5.330199	hypothetical protein
	JEONG1266_25685	0	30	-9.825127	hypothetical protein
	JEONG1266_25690	0	32	-9.393098	hypothetical protein
	JEONG1266_25695	1	19	-4.890522	hypothetical protein
	JEONG1266_25700	1	17	-3.768677	hypothetical protein
	JEONG1266_25710	-1	14	-0.605436	multidrug ABC transporter ATP-binding protein
	JEONG1266_25715	0	17	2.678048	hypothetical protein
	JEONG1266_25720	1	17	1.443673	hexulose-6-phosphate synthase
	JEONG1266_25725	0	16	-0.239834	DNA repair protein
	JEONG1266_25730	1	16	-1.167646	fructose-1,6-bisphosphate aldolase
	JEONG1266_25735	1	16	-1.103465	phosphocarrier protein HPr
	JEONG1266_25740	2	17	-0.692928	carbohydrate kinase
	JEONG1266_25745	2	19	-1.900707	PTS galactitol transporter subunit IIC
	JEONG1266_25750	0	17	-1.324597	PTS sugar transporter subunit IIB
	JEONG1266_25755	1	20	-1.634171	PTS suar transporter subunit IIA
	JEONG1266_25760	0	21	0.475217	hypothetical protein
	JEONG1266_25765	-1	20	2.832287	nickel responsive regulator
	JEONG1266_25770	0	22	4.187478	nickel import ATP-binding protein NikE
	JEONG1266_25775	-1	25	5.533424	nickel import ATP-binding protein NikD
	JEONG1266_25780	-1	24	5.585544	nickel ABC transporter permease subunit NikC
	JEONG1266_25785	1	22	5.255885	nickel ABC transporter permease subunit NikB
	JEONG1266_25790	0	21	4.811055	nickel ABC transporter, nickel/metallophore
	JEONG1266_25795	-1	20	4.411326	ACP synthase
	JEONG1266_25800	-1	20	4.899978	beta-ketoacyl-ACP synthase II
	JEONG1266_25805	0	22	5.939679	3-oxoacyl-ACP reductase
	JEONG1266_25810	1	22	6.267476	3-hydroxy-fatty acyl-ACP dehydratase
	JEONG1266_25815	1	25	6.533199	beta-ketoacyl-[acyl-carrier-protein] synthase
	JEONG1266_25820	1	26	6.432545	hypothetical protein
	JEONG1266_25825	2	24	6.249228	hypothetical protein
	JEONG1266_25830	2	24	5.568922	hypothetical protein
	JEONG1266_25835	2	20	5.218690	4-hydroxybenzoyl-CoA thioesterase
	JEONG1266_25840	1	19	4.411619	acyltransferase
	JEONG1266_25845	2	19	4.196797	hydroxymyristoyl-ACP dehydratase
	JEONG1266_25850	2	19	4.150837	DNA gyrase subunit B
	JEONG1266_25855	1	17	2.167827	acyl carrier protein
	JEONG1266_25860	2	14	2.114777	acyl carrier protein
	JEONG1266_25865	0	16	-0.793114	beta-ketoacyl synthase
	JEONG1266_25870	0	19	-2.151487	methyltransferase
	JEONG1266_25875	0	18	-1.639858	hypothetical protein
	JEONG1266_25880	1	18	-0.212345	permease
	JEONG1266_25885	1	17	-0.063049	MFS transporter
	JEONG1266_25890	1	15	-0.481334	hypothetical protein
	JEONG1266_25895	1	15	0.898848	hypothetical protein
	JEONG1266_25905	-2	16	4.352319	tRNA 2-thiouridine(34) synthase TusA
	JEONG1266_25910	-1	16	3.759872	zinc/cadmium/mercury/lead-transporting ATPase
	JEONG1266_25915	-1	15	3.558785	hypothetical protein
	JEONG1266_25920	0	16	4.000908	hypothetical protein
	JEONG1266_25925	2	13	3.611502	hypothetical protein
	JEONG1266_25930	2	12	2.008705	16S rRNA (guanine(966)-N(2))-methyltransferase
	JEONG1266_25935	2	14	1.621021	signal recognition particle-docking protein
	4901#JEONG1266_25715	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	83	8e-20
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 83.3 bits (206), Expect = 8e-20
		 Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 81/408 (19%)
		
		Query: 6   RHLAWWGVGLLAVAAIVAWWLLRPAGVP-EGFAVSNGRIEATEVDIASKIAGRIDTILVK 64
		           R +A++ +G L +A I++            G    +GR +     I       +  I+VK
		Sbjct: 58  RLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENSIVKEIIVK 113
		
		Query: 65  EGQFVREGEVLAKMDTRV----------------LQEQRLEAI----------------- 91
		           EG+ VR+G+VL K+                    L++ R + +                 
		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173
		
		Query: 92  -------------------AQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSV 132
		                               Q    Q+     +  L+++++E     + +N+ +      
		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233
		
		Query: 133 AKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQ-- 190
		             R     SL  + AI+   + +       A   L   K+Q+   ++ I +A+       
		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
		
		Query: 191 -----------AQTRVEAAQATERRIAADID--DSELKAPRDGRV-QYRVAEPGEVLAAG 236
		                       QT       T      +     S ++AP   +V Q +V   G V+   
		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
		
		Query: 237 GRVLNMVDLSDVY-MTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTP 295
		             ++ +V   D   +T  +  +  G + +G  A + ++A P  R       V  V     
		Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVKNINL 410
		
		Query: 296 KTVETSDERLKLMFRVKARIPPELLQQHLEYV--KTGLPGVAWVRVNE 341
		             +E  D+RL L+F V   I    L    + +   +G+   A ++   
		Sbjct: 411 DAIE--DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
		
		
	4902#JEONG1266_25720	PF05272#Virulence-associated E family protein	30	0.044
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.4 bits (68), Expect = 0.044
		 Identities = 9/26 (34%), Positives = 14/26 (53%)
		
		Query: 37  ARCMVGLIGPDGVGKSSLLSLISGAR 62
		               V L G  G+GKS+L++ + G  
		Sbjct: 595 FDYSVVLEGTGGIGKSTLINTLVGLD 620
		
		
	4903#JEONG1266_25725	ABC2TRNSPORT#ABC-2 type transport system membrane protein signat...	51	2e-09
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein
		           signature.
		          Length = 262
		
		 Score = 51.1 bits (122), Expect = 2e-09
		 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
		
		Query: 200 REREHGTVEHLLVMPITPFEIMMAKI-WSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPL 258
		           R     T E +L   +   +I++ ++ W+     L  +G+ +V    G      +    L
		Sbjct: 93  RMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY----TQWLSLL 148
		
		Query: 259 FMLGV-ALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQD 317
		           + L V AL+  A  S+G+ +  +A S         LV+ P+  LSG   P + +P + Q 
		Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208
		
		Query: 318 IMLIMPTTHFVSLAQAILYRGAGFEIVWPQFLTLMAIGGAFF-TIALLRFR 367
		               +P +H + L + I+      ++        + I   FF + ALLR R
		Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259
		
		
	4921#JEONG1266_25815	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	93	5e-25
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 93.2 bits (231), Expect = 5e-25
		 Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 15/251 (5%)
		
		Query: 3   RSVLVTGASKGIGRAIACQLAADGFNI-GVHYHRDATGAQETLNAIVANGGNGRLLSFDV 61
		           +   +TGA++GIG A+A  LA+ G +I  V Y+ +      +  ++ A   +      DV
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVS--SLKAEARHAEAFPADV 66
		
		Query: 62  ANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSDDDWDAVIHTNLDSFYNVIQP 121
		            +     E+      + G    +V+ AG+ R     +LSD++W+A    N    +N  + 
		Sbjct: 67  RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126
		
		Query: 122 CIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCI 181
		            +   +  R+ G I+T+ S    +       Y+++KA  +  TK L +ELA+  I  N +
		Sbjct: 127 -VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185
		
		Query: 182 APGLIDTGMIEM-------EESALKEAMSM----IPMKRMGQAEEVAGLASYLMSDIAGY 230
		           +PG  +T M           E  +K ++      IP+K++ +  ++A    +L+S  AG+
		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245
		
		Query: 231 VTRQVISINGG 241
		           +T   + ++GG
		Sbjct: 246 ITMHNLCVDGG 256
		
		
	4925#JEONG1266_25835	ACRIFLAVINRP#Acriflavin resistance protein family signature.	49	7e-08
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score = 49.1 bits (117), Expect = 7e-08
		 Identities = 37/167 (22%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
		
		Query: 246 YSDYASQQAKQDISTLGVATLLGVILLIVAVFRSLRPLLLCVISIGIGALAGTVATLLIF 305
		            + +      + + TL  A +L V L++    +++R  L+  I++ +  L GT A L  F
		Sbjct: 329 TTPFVQLSIHEVVKTLFEAIML-VFLVMYLFLQNMRATLIPTIAVPV-VLLGTFAILAAF 386
		
		Query: 306 G-ELHLMTLVMSMSVIGISADYTLYYL--TERMVHGNDVSPWQ----SLAKVRNALLLAL 358
		           G  ++ +T+   +  IG+  D  +  +   ER++  + + P +    S+++++ AL+   
		Sbjct: 387 GYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIA 446
		
		Query: 359 LTTVAAYL-IMMLAPFPGI--RQMAIFAAVGLSASCLTVLFWHPWLC 402
		           +   A ++ +       G   RQ +I     ++ S L  L   P LC
		Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493
		
		
		
		 Score = 41.7 bits (98), Expect = 1e-05
		 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 31/199 (15%)
		
		Query: 592 LVPVEGVKSSALMQEIATYYPCGIAWV---DRKSTFDELFALYRYVLTGLLLVALAVIAC 648
		           L   + +K  A + E+  ++P G+  +   D         +++  V T    + L  +  
		Sbjct: 300 LDTAKAIK--AKLAELQPFFPQGMKVLYPYDTTPFVQL--SIHEVVKTLFEAIMLVFLVM 355
		
		Query: 649 GAVARLGWRKGLISLVPSVLSLGCGLAVLAMSGQAVNLFSLLALVLVLGIGI-------- 700
		               +   R  LI  +   + L    A+LA  G ++N  ++  +VL +G+ +        
		Sbjct: 356 YLFLQ-NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414
		
		Query: 701 NYTLFFSNPRGTPLT-----------SLLAIALAMLTTLLTLGMLVFSATQAISSFGIVL 749
		           N        +  P             +L+ IA+ +    + +     S       F I +
		Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474
		
		Query: 750 VSGI----FTAFLLSPLAM 764
		           VS +      A +L+P   
		Sbjct: 475 VSAMALSVLVALILTPALC 493
		
		
		
		 Score = 36.7 bits (85), Expect = 4e-04
		 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 33/224 (14%)
		
		Query: 567  EWLASPASEGWRLLWLTLENGESGVLV---PVEGVKSS---ALMQEIATYYPCGIAWVDR 620
		             W+            L   NG   + +      G  S    ALM+ +A+  P GI   D 
		Sbjct: 807  HWVYGSPR-------LERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGI-GYDW 858
		
		Query: 621  KSTFDELFALYRYVLTGLLLVALAVIACGAVARLGWRKGLISLVPSVLSLGCGLAVLAMS 680
		                 +           + +  + V  C A     W   +  ++   L +   L    + 
		Sbjct: 859  TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF 918
		
		Query: 681  GQAVNLFSLLALVLVLGIG-------INYTLFFSNPRGTPL---------TSLLAIALAM 724
		             Q  +++ ++ L+  +G+        + +        G  +           L  I +  
		Sbjct: 919  NQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTS 978
		
		Query: 725  LTTLLTLGMLVFSAT---QAISSFGIVLVSGIFTAFLLSPLAMP 765
		            L  +L +  L  S      A ++ GI ++ G+ +A LL+   +P
		Sbjct: 979  LAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVP 1022
		
		
	4937#JEONG1266_25905	TCRTETA#Tetracycline resistance protein signature.	52	1e-09
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 52.1 bits (125), Expect = 1e-09
		 Identities = 80/398 (20%), Positives = 147/398 (36%), Gaps = 32/398 (8%)
		
		Query: 13  LRLNLRILSIVMFNFASYLTIGLPLAVLPGYVHDVM--GFSAFWAGLVISLQYFATLLSR 70
		           ++ N  ++ I+       + IGL + VLPG + D++         G++++L         
		Sbjct: 1   MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60
		
		Query: 71  PHAGRYADLLGPKKIVVFGLCGCFLSGLGYLTAGLTASLPVISLLLLCLGRVILGI-GQS 129
		           P  G  +D  G + +++  L G   + + Y        L V     L +GR++ GI G +
		Sbjct: 61  PVLGALSDRFGRRPVLLVSLAG---AAVDYAIMATAPFLWV-----LYIGRIVAGITGAT 112
		
		Query: 130 FAGTGSTLWGVGVVGSL--HIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQALALIIM 187
		            A  G+ +  +        H G + +  G        +G  +G    H     A AL  +
		Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172
		
		Query: 188 GVALVAILLAIPRPTVK--ASKGKPLPFRAVLGRVWLYGMALALA-----SAGFGVIATF 240
		                  LL       +    +    P  +      +  +A  +A          V A  
		Sbjct: 173 NFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232
		
		Query: 241 ITLFYDVK-GWDGAAFALTLFSCAFVGT---RLLFPNGINRIGGLNVAMICFSVEIIGLL 296
		             +F + +  WD     ++L +   + +    ++      R+G     M+    +  G +
		Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292
		
		Query: 297 LVGVATMPWMAKIG-VLLAGAGFSLVFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGV 355
		           L+  AT  WMA    VLLA  G  +  PAL  +  + V ++ QG    +      L+  +
		Sbjct: 293 LLAFATRGWMAFPIMVLLASGGIGM--PALQAMLSRQVDEERQGQLQGSLAALTSLT-SI 349
		
		Query: 356 TGPLAGLVMSWAGVPV----IYLAAAGLVAIALLLTWR 389
		            GPL    +  A +       ++A A L  + L    R
		Sbjct: 350 VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
		
		
	4940#JEONG1266_25920	PF01206#SirA family protein	105	3e-34
		>PF01206#SirA family protein
		          Length = 76
		
		 Score =  105 bits (265), Expect = 3e-34
		 Identities = 24/72 (33%), Positives = 41/72 (56%)
		
		Query: 9  DHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET 68
		          D +LDA GL CP P++  +KT+  M  GE L ++A DP + +D   F     HEL+ ++ 
		Sbjct: 5  DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64
		
		Query: 69 DGLPYRYLIRKG 80
		          +   Y + +++ 
		Sbjct: 65 EDGTYHFRLKRA 76
		
		
	4946#JEONG1266_25950	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	53	3e-09
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 52.8 bits (126), Expect = 3e-09
		 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 12/183 (6%)
		
		Query: 19   EQTPEKETEVQNEQTVVEEIVQAQEPVKASEQAVEE----QPQAHTEAEAET-FAADVVE 73
		               P   T  +  +TV E   Q  + V+ +EQ   E      +   EA++         E
		Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084
		
		Query: 74   VTEQVAENEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAE 133
		            V +  +E ++ Q       +   V +E    V  E+ +          +VSP++ Q+E  
		Sbjct: 1085 VAQSGSETKETQTTE--TKETATVEKEEKAKVETEKTQ---EVPKVTSQVSPKQEQSETV 1139
		
		Query: 134  TVEIVEAAEEEAAK--EEITDEELEAQALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKP 191
		              +   A E +     +E   +          A E +  V  P  E   V       E P
		Sbjct: 1140 QPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199
		
		Query: 192  TKE 194
		               
		Sbjct: 1200 ENT 1202
		
		
		
		 Score = 46.6 bits (110), Expect = 2e-07
		 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 20/178 (11%)
		
		Query: 22   PEKETEVQNEQTVVEEIVQAQEPVKASEQAV----EEQPQAHTEAEAETFAADVVEVTEQ 77
		            PE E   +  QTV    +     ++A   +V    EE  +           A   E TE 
		Sbjct: 983  PEVE---KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039
		
		Query: 78   VAENEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEI 137
		            VAEN K + +     + +            +  +  +  +    EV+    Q+ +ET E 
		Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA----QSGSETKET 1095
		
		Query: 138  VEAAEEEAAKEEITDEELEAQALAAEAAEEAVMV--VPP----AEEEQPVEEIAQEQE 189
		                 +E A  E   +E +A+    +  E   +   V P    +E  QP  E A+E +
		Sbjct: 1096 QTTETKETATVE---KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150
		
		
		
		 Score = 43.5 bits (102), Expect = 2e-06
		 Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 6/157 (3%)
		
		Query: 17   QKEQTPEKETE----VQNEQTVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVV 72
		            + ++T   E E    V+ E+T     V +Q   K  EQ+   QPQA    E +       
		Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK-QEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 73   EVTEQVAENEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEA 132
		              ++     +  QP  E  +  E  V E+   V      +  PE+       P      +
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTES-TTVNTGNSVVENPENTTPATTQPTVNSESS 1216
		
		Query: 133  ETVEIVEAAEEEAAKEEITDEELEAQALAAEAAEEAV 169
		               +        +    +      +   +  A  +  
		Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT 1253
		
		
		
		 Score = 43.1 bits (101), Expect = 2e-06
		 Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 2/176 (1%)
		
		Query: 17   QKEQTPEKETEVQNEQTVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTE 76
		             +E   E ++ V+      E      E  +      +E      E +A+       EV  
		Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP- 1123
		
		Query: 77   QVAENEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEEVSPEEWQAEAETVE 136
		            +V      + E     QP+       +P  +  +E     +  A+   P +  +      
		Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPT-VNIKEPQSQTNTTADTEQPAKETSSNVEQP 1182
		
		Query: 137  IVEAAEEEAAKEEITDEELEAQALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPT 192
		            + E+         + + E    A             P     + V  +    E  T
		Sbjct: 1183 VTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT 1238
		
		
		
		 Score = 30.8 bits (69), Expect = 0.016
		 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
		
		Query: 52   VEEQPQAHTEAEAETFAADVVEVTEQVAEN-EKAQPEAEVVAQPEPVVE-ETPEPVAIER 109
		            VE++ Q        T      +V    + N E A+ +   V  P P    ET E VA   
		Sbjct: 985  VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044
		
		Query: 110  EELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKE--------EITDEELEAQALA 161
		            ++        ++ V   E  A   T +  E A+E A           E+     E +   
		Sbjct: 1045 KQ-------ESKTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQSGSETKETQ 1096
		
		Query: 162  AEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTK 193
		                +E   V    +EE+   E  + QE P  
		Sbjct: 1097 TTETKETATV---EKEEKAKVETEKTQEVPKV 1125
		
		
JEONG1266_25985	JEONG1266_26060	Y	Y	N	JEONG1266_25910	JEONG1266_26105
	JEONG1266_25985	-2	23	4.096410	high-affinity branched-chain amino acid ABC
	JEONG1266_25990	-1	21	3.338984	high-affinity branched-chain amino acid ABC
	JEONG1266_25995	-1	23	3.189732	ABC transporter ATP-binding protein
	JEONG1266_26000	-1	23	3.195665	hypothetical protein
	JEONG1266_26005	-2	23	2.576595	sn-glycerol-3-phosphate ABC transporter
	JEONG1266_26010	-1	23	3.313919	glycerol-3-phosphate transporter permease
	JEONG1266_26015	-2	21	3.188642	glycerol-3-phosphate transporter
	JEONG1266_26020	-2	23	3.479193	glycerol-3-phosphate transporter ATP-binding
	JEONG1266_26025	-2	22	3.706493	glycerophosphodiester phosphodiesterase
	JEONG1266_26030	-2	17	1.600773	hypothetical protein
	JEONG1266_26035	0	16	-2.001967	gamma-glutamyltransferase
	JEONG1266_26040	0	18	-3.724096	hypothetical protein
	JEONG1266_26045	0	21	-5.090801	hypothetical protein
	JEONG1266_26050	0	18	-4.552037	acetyltransferase
	JEONG1266_26055	0	21	-7.034601	hypothetical protein
	JEONG1266_26060	0	17	-3.388354	oxidoreductase
	4960#JEONG1266_26020	MALTOSEBP#Maltose binding protein signature.	39	2e-05
		>MALTOSEBP#Maltose binding protein signature.
		          Length = 396
		
		 Score = 39.3 bits (91), Expect = 2e-05
		 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
		
		Query: 134 GHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQ 193
		           G L++ P       L YNKD           PPKTW+++     +LKA G      +  +
		Sbjct: 127 GKLIAYPIAVEALSLIYNKDLLP-------NPPKTWEEIPALDKELKAKGKSALMFNLQE 179
		
		Query: 194 GWIQLENFSAWNGLPFASKNNGFDGTDAVLEF--NKPEQVKHIAMLEEMNKKGDFSYVGR 251
		            +      +A  G  F  +N  +D  D  ++    K      + +++  +   D  Y   
		Sbjct: 180 PYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDY--- 236
		
		Query: 252 KDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMP 291
		              +   F  G+ AMT     + +NI + +K NYGV ++P
		Sbjct: 237 -SIAEAAFNKGETAMTINGPWAWSNI-DTSKVNYGVTVLP 274
		
		
	4963#JEONG1266_26035	PF05272#Virulence-associated E family protein	31	0.010
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.8 bits (69), Expect = 0.010
		 Identities = 11/35 (31%), Positives = 19/35 (54%)
		
		Query: 33  IVMVGPSGCGKSTLLRMVAGLERVTEGDICINDQR 67
		           +V+ G  G GKSTL+  + GL+  ++    I   +
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
		
		
	4964#JEONG1266_26040	PF04619#Dr-family adhesin	30	0.004
		>PF04619#Dr-family adhesin
		          Length = 160
		
		 Score = 30.3 bits (68), Expect = 0.004
		 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
		
		Query: 29  VGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQD----LLRVDAGSW 84
		           +G       ++ D    + G+ FL+ D+N ++            W        + D GSW
		Sbjct: 70  LGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSW 129
		
		Query: 85  YGK 87
		            G 
		Sbjct: 130 GGI 132
		
		
	4966#JEONG1266_26050	NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature.	32	0.007
		>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature.
		          Length = 293
		
		 Score = 31.6 bits (71), Expect = 0.007
		 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
		
		Query: 276 RTPISGDYRGYQVYSMPPPSSGGIHIVQILNI--LENFDMKKYGF-GSADAMQIMAEAEK 332
		           R P+ G+ R   + SMPPP   G H  +I N+   + FD    G+ G   A  I++E EK
		Sbjct: 77  RRPM-GETRNVSLISMPPPWRPGEHADRITNLKFFKQFD----GYVGGQTAWGILSELEK 131
		
		Query: 333 YAYADRSEYLGDPDFVKVPWQA 354
		             Y         P F    WQ+
		Sbjct: 132 GRY---------PTFSYQDWQS 144
		
		
	4969#JEONG1266_26065	SACTRNSFRASE#Streptothricin acetyltransferase signature.	36	1e-05
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 36.5 bits (84), Expect = 1e-05
		 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
		
		Query: 55  VACIDGDVVGHLTIDVQQRPRRSHVADFGICVDARWKNRGVASALMREMIE------MCD 108
		           +  ++ + +G + I        + + D  +  D R K  GV +AL+ + IE       C 
		Sbjct: 69  LYYLENNCIGRIKIR-SNWNGYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125
		
		Query: 109 NWLRVDRIELTVFVDNAPAIKVYKKFGFEIEG 140
		             L    I       N  A   Y K  F I  
		Sbjct: 126 LMLETQDI-------NISACHFYAKHHFIIGA 150
		
		
JEONG1266_26315	JEONG1266_26390	Y	Y	N	JEONG1266_26235	JEONG1266_26435
	JEONG1266_26315	-2	14	3.263902	DNA utilization protein HofN
	JEONG1266_26320	-1	14	3.556944	DNA utilization protein HofO
	JEONG1266_26325	1	20	2.410114	DNA utilization protein HofP
	JEONG1266_26330	1	17	1.795270	DNA transporter HofQ
	JEONG1266_26335	2	15	1.850475	shikimate kinase I
	JEONG1266_26340	2	15	1.202268	3-dehydroquinate synthase
	JEONG1266_26345	2	15	1.077730	cell division protein DamX
	JEONG1266_26350	2	15	0.719213	DNA adenine methylase
	JEONG1266_26355	1	15	1.066995	ribulose-phosphate 3-epimerase
	JEONG1266_26360	0	14	0.590372	phosphoglycolate phosphatase
	JEONG1266_26365	-2	13	0.770564	tryptophan--tRNA ligase
	JEONG1266_26370	-2	16	1.520507	transcriptional regulator
	JEONG1266_26375	-1	18	2.190932	fructoselysine kinase
	JEONG1266_26380	-1	23	2.516771	fructoselysine kinase
	JEONG1266_26385	-1	22	3.072230	fructoselysine 3-epimerase
	JEONG1266_26390	-2	21	3.118791	fructoselysine-6-P-deglycase
	5024#JEONG1266_26345	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	286	2e-93
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		           family signature.
		          Length = 607
		
		 Score =  286 bits (732), Expect = 2e-93
		 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 18/301 (5%)
		
		Query: 91  LENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDL 150
		           L +  I     D   + +A     SA+  +  D   N +++RD+   +   ++ +  +D 
		Sbjct: 219 LSDATIQQVTVDNQRIPQAAT-RASAQARVEADPSLNAIIVRDSPERMPMYQRLIHALDK 277
		
		Query: 151 PVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNI 210
		           P  ++E++  IV IN   L ELGV W +           + T G   ++A+     G   
		Sbjct: 278 PSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIASN----GALG 333
		
		Query: 211 GRINGRLLDL---ELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGAT 267
		             ++ R LD     ++ LE +    +++ P LL      A I   SE  Y   +G+  A 
		Sbjct: 334 SLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH-SETYYVKVTGKEVA- 391
		
		Query: 268 SVEFKEAVLG--MEVTPTVLQKG---RIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 322
		             E K    G  + +TP VL +G    I L LHI            +G +  I +  ++T
		Sbjct: 392 --ELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDT 448
		
		Query: 323 QVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRL 382
		              V  G++L +GGI+  +       VPLLGDIP+ G LFR   +   R   +  I PR+
		Sbjct: 449 VARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVRLFIIEPRI 508
		
		Query: 383 V 383
		           +
		Sbjct: 509 I 509
		
		
		
		 Score = 28.7 bits (64), Expect = 0.049
		 Identities = 12/63 (19%), Positives = 23/63 (36%)
		
		Query: 3   DDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNI 62
		               +  +L          +VVS  ++  VS        +  LQ +     L+   +GN+
		Sbjct: 41  KGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNV 100
		
		Query: 63  LSV 65
		           L +
		Sbjct: 101 LYI 103
		
		
	5025#JEONG1266_26350	CARBMTKINASE#Bacterial carbamate kinase signature.	32	8e-04
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score = 32.1 bits (73), Expect = 8e-04
		 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
		
		Query: 32  FYDSDQEIEKRTGADVGWVFDLEGEEGFRD----------REEKVINELTEKQGIVLATG 81
		           FYD +    KR   + GW+   +   G+R            E + I +L E+  IV+A+G
		Sbjct: 136 FYDEETA--KRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASG 193
		
		Query: 82  GGSVKSRETRNRLSARGVVVYLETTIEKQLA 112
		           GG V        +  +GV    E  I+K LA
		Sbjct: 194 GGGVPVILEDGEI--KGV----EAVIDKDLA 218
		
		
	5027#JEONG1266_26360	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	44	1e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 43.5 bits (102), Expect = 1e-06
		 Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 10/203 (4%)
		
		Query: 126  APSTTSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAENTQQDVSLPPISST-PTQGQ 184
		             P+   +D  +    + ++A    D+A    PAP T S        +    S T     Q
		Sbjct: 999  TPNNIQADVPSVPSNNEEIA--RVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQ 1056
		
		Query: 185  TPAATDGQQRVEVQGDLNNALTQPQN----QQQLNNVAVNSTLPTEPATVAPVRNGNASR 240
		                T  Q R   +   +N     Q     Q         +T   E ATV   +   A  
		Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE--KEEKAKV 1114
		
		Query: 241  DTAKTQTAERPATTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAA 300
		            +T KTQ   +  +    +Q+   E  +PQA    E  P     +        A T+ PA 
		Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQS-ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173
		
		Query: 301  TSTPAPKETATTAPVQTASPAQT 323
		             ++   ++  T +       +  
		Sbjct: 1174 ETSSNVEQPVTESTTVNTGNSVV 1196
		
		
		
		 Score = 42.4 bits (99), Expect = 4e-06
		 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 19/199 (9%)
		
		Query: 143  DLAGNATDQANGVQPAPGTTSAENTQQDVSL-----------------PPISSTPTQGQT 185
		            DL     ++ N        T+  N Q DV                   PP  +TP++   
		Sbjct: 979  DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038
		
		Query: 186  PAATDGQQRVEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRDTAKT 245
		              A + +Q  +         T+   Q +       S +     T    ++G+ +++T  T
		Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098
		
		Query: 246  QTAERPATTRPARQQAVIEPKKPQATVKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 305
		            +T E     +  + +   E  +    V ++  P  +  +  +P A  A    P       
		Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158
		
		Query: 306  PKETATTAPVQTASPAQTT 324
		              +T TTA   T  PA+ T
		Sbjct: 1159 QSQTNTTA--DTEQPAKET 1175
		
		
JEONG1266_27115	JEONG1266_27175	Y	Y	N	JEONG1266_27040	JEONG1266_27235
	JEONG1266_27115	-1	19	4.005884	N-acetylmannosamine kinase
	JEONG1266_27120	-2	18	3.818178	hypothetical protein
	JEONG1266_27125	-1	16	2.481244	hypothetical protein
	JEONG1266_27130	-1	17	2.683353	glutamate synthase
	JEONG1266_27135	-1	18	3.063262	glutamate synthase large subunit
	JEONG1266_27140	-2	16	2.714873	TIGR01212 family radical SAM protein
	JEONG1266_27145	-2	15	0.222227	aerobic respiration two-component sensor
	JEONG1266_27150	0	15	-0.346840	isoprenoid biosynthesis protein ElbB
	JEONG1266_27155	-1	16	0.154035	monofunctional biosynthetic peptidoglycan
	JEONG1266_27160	0	18	-0.667364	hypothetical protein
	JEONG1266_27165	3	16	-0.152564	phosphohistidinoprotein-hexose
	JEONG1266_27170	3	18	0.442935	RNase adaptor protein RapZ
	JEONG1266_27175	2	17	0.279721	PTS IIA-like nitrogen-regulatory protein PtsN
	5177#JEONG1266_27150	HTHFIS#FIS bacterial regulatory protein HTH signature.	65	6e-13
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 64.9 bits (158), Expect = 6e-13
		 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
		
		Query: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587
		           +L+ +D      V    L + G  V +             G+ DLV+ D+ +PD    D+
		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65
		
		Query: 588 SRELTKRYPREDLPPLVALTA-NVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKK 641
		              + K  P     P++ ++A N      +    G  D L KP  +  L  +I +
		Sbjct: 66  LPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
		
		
JEONG1266_27585	JEONG1266_27620	Y	Y	N	JEONG1266_27510	JEONG1266_27710
	JEONG1266_27585	-1	18	-5.126086	2-dehydro-3-deoxyglucarate aldolase
	JEONG1266_27590	1	24	-7.352357	2-hydroxy-3-oxopropionate reductase
	JEONG1266_27595	0	26	-9.020167	glycerate kinase
	JEONG1266_27600	1	29	-10.012366	hypothetical protein
	JEONG1266_27610	1	26	-10.597499	hypothetical protein
	JEONG1266_27615	0	20	-6.743054	transcriptional regulator
	JEONG1266_27620	-1	14	-3.323914	transcriptional regulator
	5262#JEONG1266_27590	PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase sign...	33	0.001
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase
		           signature.
		          Length = 572
		
		 Score = 32.8 bits (75), Expect = 0.001
		 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
		
		Query: 144 KNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA----------AALGHLGNASHP 193
		            +I + + +E        +  A  + VD   +G +DL             + +L    HP
		Sbjct: 423 DSIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHP 480
		
		Query: 194 DVQKTIQHIFNRASAHGKPSGI 215
		            + + +  +   A + GK  G+
		Sbjct: 481 AILRLVDMVIKAAHSEGKWVGM 502
		
		
JEONG1266_00885	JEONG1266_00990	N	Y	Y	JEONG1266_00800	JEONG1266_01015
	JEONG1266_00885	2	38	-10.475166	hypothetical protein
	JEONG1266_00895	4	42	-12.882678	*hypothetical protein
	JEONG1266_00900	5	44	-13.538126	hypothetical protein
	JEONG1266_00905	3	44	-12.569330	hypothetical protein
	JEONG1266_00910	3	43	-12.605516	AraC family transcriptional regulator
	JEONG1266_00915	3	42	-12.695157	EscC/YscC/HrcC family type III secretion system
	JEONG1266_00920	3	42	-12.595642	type III secretion system protein
	JEONG1266_00925	4	44	-12.653325	EscV/YscV/HrcV family type III secretion system
	JEONG1266_00930	2	43	-12.597122	EscN/YscN/HrcN family type III secretion system
	JEONG1266_00935	3	47	-15.110773	type III secretion protein
	JEONG1266_00940	4	48	-14.605741	hypothetical protein
	JEONG1266_00945	5	50	-15.565059	type III secretion protein
	JEONG1266_00950	6	50	-15.758465	type III secretion system protein
	JEONG1266_00955	5	50	-16.042461	EscR/YscR/HrcR family type III secretion system
	JEONG1266_00960	5	51	-16.523633	EscS/YscS/HrcS family type III secretion system
	JEONG1266_00965	5	50	-16.490537	EscU/YscU/HrcU family type III secretion system
	JEONG1266_00970	5	51	-17.001130	invasion protein
	JEONG1266_00975	5	52	-16.061551	LuxR family transcriptional regulator
	JEONG1266_00980	5	53	-16.463239	EscF/YscF/HrpA family type III secretion system
	JEONG1266_00985	6	53	-16.595897	hypothetical protein
	JEONG1266_00990	7	52	-16.196790	EscJ/YscJ/HrcJ family type III secretion inner
	166#JEONG1266_00885	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	37	4e-05
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 37.1 bits (86), Expect = 4e-05
		 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
		
		Query: 160 AAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTD 219
		           A   GK+ + G           IK  E+ I        ++V  G+SV+ G  +  + +  
		Sbjct: 84  ATANGKLTHSGRSK-------EIKPIENSIV-----KEIIVKEGESVRKGDVLLKLTALG 131
		
		Query: 220 AASVRLHFQIRYRATAIDPLRY 241
		           A +  L  Q       ++  RY
		Sbjct: 132 AEADTLKTQSSLLQARLEQTRY 153
		
		
	171#JEONG1266_00915	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	448	e-154
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		           family signature.
		          Length = 607
		
		 Score =  448 bits (1155), Expect = e-154
		 Identities = 158/536 (29%), Positives = 271/536 (50%), Gaps = 54/536 (10%)
		
		Query: 34  YVANKENLRSFFETVSSYAGKPTIVSKLAMKKQISGNFDLTEPYALIERLSAQMGLIWYD 93
		           YVA  E+LR       +      +VS     K +SG F+   P   ++ +++   L+WY 
		Sbjct: 38  YVAKGESLRDLLTDFGANYDATVVVSDKINDK-VSGQFEHDNPQDFLQHIASLYNLVWYY 96
		
		Query: 94  DGKAIYIYDSSEMRNALINLRKVSTNEFNNFLKKSGLYNSRYEIKGD-GNGTFYVSGPPV 152
		           DG  +YI+ +SE+ + LI L++    E    L++SG++  R+  + D  N   YVSGPP 
		Sbjct: 97  DGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPR 156
		
		Query: 153 YVDLVVNAAKLMEQNSD--GIEIGRNKVGIIHLVNTFVNDRTYELRGEKIVIPGMAKVLS 210
		           Y++LV   A  +EQ +     + G   + I  L     +DRT   R +++  PG+A +L 
		Sbjct: 157 YLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQ 216
		
		Query: 211 TLLNNNIKQSTGVNVLSEISSRQQLKNVSRMPPFPGAEEDDDLQVEKIISTAGAPETDDI 270
		            +L++              ++ QQ+   ++  P                  A    +   
		Sbjct: 217 RVLSD--------------ATIQQVTVDNQRIPQ-----------------AATRASAQA 245
		
		Query: 271 QIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRHIELSLWIIDIDKTDLEQLGADWSG 330
		           ++ A P  N+++V+ +  ++   ++L+  LD P   IE++L I+DI+   L +LG DW  
		Sbjct: 246 RVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRV 305
		
		Query: 331 TIKIGSSLSASFNNSG----------SISTLDG---TQFIATIQALAQKRRAAVVARPVV 377
		            I+ G++       +G            S +D       +A +  L  +  A VV+RP +
		Sbjct: 306 GIRTGNNHQVVIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTL 365
		
		Query: 378 LTQENIPAIFDNNRTFYTKLVGERTAELDEVTYGTMISVLPRFAARN---QIELLLNIED 434
		           LTQEN  A+ D++ T+Y K+ G+  AEL  +TYGTM+ + PR   +    +I L L+IED
		Sbjct: 366 LTQENAQAVIDHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIED 425
		
		Query: 435 GNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKIPILGSIPFI 494
		           GN+   + + ++ +P + RT++ T+ARV  G+SL+IGG  RD  +    K+P+LG IP+I
		Sbjct: 426 GNQ-KPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYI 484
		
		Query: 495 GKLFGYEGTNANNIVRVFLIEPREIDERMMNNANEAAVDARAITQQMAKNKEINDE 550
		           G LF  +       VR+F+IEPR IDE + ++   A  + + +   +    EI+++
		Sbjct: 485 GALFRRKSELTRRTVRLFIIEPRIIDEGIAHHL--ALGNGQDLRTGILTVDEISNQ 538
		
		
	172#JEONG1266_00920	INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signat...	240	2e-78
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)
		           signature.
		          Length = 372
		
		 Score =  240 bits (613), Expect = 2e-78
		 Identities = 128/321 (39%), Positives = 195/321 (60%)
		
		Query: 14  AREVSRLEDIITEDNEDIEAEMPKMRDDPAGKEARFLQATDEMSAALTQFMKKKIYEEQL 73
		           +R+ S  +     D +  E +       P  +  +F+Q+TDEMSAAL QF  ++ YE++ 
		Sbjct: 16  SRQASHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKS 75
		
		Query: 74  ANFLDGEEYVLEDQPIEKTDKVMEALKAATTHDYEVYSFAKKLFPDESDLVVVLRAILRK 133
		           +N  +  E VLED+ + K  ++++ +        +    A+ LFPD SDLV+VLR +LR+
		Sbjct: 76  SNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFPDPSDLVLVLRELLRR 135
		
		Query: 134 KQISENVRLNAEALLRKVNQETTKKFINSGINSALKAKLFGQALSLNPKLLRASYRQFLM 193
		           K + E VR   E+LL+ V ++T  K + +GIN ALKA+LFG+ LSL P LLRASYRQF+ 
		Sbjct: 136 KDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLSLKPGLLRASYRQFIQ 195
		
		Query: 194 AEDDAVDTYVEWIGSYGYQNRMLVTKFIKETLFSDINALDASCSSLEFGMFLNKLSQLLS 253
		           +E   V+ Y +WI SYGYQ R++V  FI+ +L +DI+A DASCS LEFG  L +L+QL  
		Sbjct: 196 SESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKM 255
		
		Query: 254 LQSAEALFLKTLMNNPIIKKFISAEDYWIFFLISLIKFPETAEELLNNALVTLPADANYK 313
		           L+SA+ LF+ TL++    K F + E  W+  ++SL++ P   + LL + +       ++K
		Sbjct: 256 LRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHK 315
		
		Query: 314 DKTLLLKAIYSGCTNLPFSLF 334
		           +    L+  Y  C  +P SLF
		Sbjct: 316 EHASFLQIFYQVCKAIPSSLF 336
		
		
	173#JEONG1266_00925	VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.	31	0.019
		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.
		          Length = 1291
		
		 Score = 31.2 bits (70), Expect = 0.019
		 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
		
		Query: 597 EIEDRIRDGVRPTAGGTFLNLDASEAEMILDNFKLAL---SGINIPIKDIILLGSVDIRR 653
		           EI +R+  G    A  T L L ASE     +N +++L   + +N+    + L+G+V + R
		Sbjct: 202 EINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGR 261
		
		
	175#JEONG1266_00935	SSPAMPROTEIN#Salmonella surface presentation of antigen gene typ...	43	7e-08
		>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M
		           signature.
		          Length = 147
		
		 Score = 42.8 bits (100), Expect = 7e-08
		 Identities = 41/142 (28%), Positives = 74/142 (52%)
		
		Query: 2   LSKVNRLIRRTAQSLAACEASLQKLNAEKEKLAEKERLYDMQLKNLQSLLDMKELLGEVV 61
		           L+++  L RR     + CE+ L +   E  +L  +E     Q+  L+ LLD        +
		Sbjct: 4   LTRIKVLQRRCTVFHSQCESILLRYQDEDRRLQVEEEAIVEQIAGLKLLLDTLRAENRQL 63
		
		Query: 62  FRQDIFYSLRKVTVIQQQIAEINLEKQKIAERRKILNKEIVQQQAQRKHWWLKGEKYDRL 121
		            R++I+  LRK +++++QI ++ L+  +I E+R  L K+  + Q + K+W  K   Y R 
		Sbjct: 64  SREEIYALLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQEKSKYWLRKEGNYQRW 123
		
		Query: 122 KKRIKKQLLNQMLYQDELEQEE 143
		             R K+  + + + Q+E E EE
		Sbjct: 124 IIRQKRLYIQREIQQEEAESEE 145
		
		
	177#JEONG1266_00945	SSPANPROTEIN#Salmonella invasion protein InvJ signature.	49	5e-10
		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.
		          Length = 336
		
		 Score = 48.6 bits (115), Expect = 5e-10
		 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
		
		Query: 31  ENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDVTAQRWVLTEQDE 89
		           ++ LTY+FQRWG +++V I     G   L PS+T V  RLH+   N    QRW LT +D+
		Sbjct: 260 DSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDD 317
		
		Query: 90  RQGQRHQPHEEQENE 104
		           +Q  + Q H +Q  E
		Sbjct: 318 QQNPQQQQHRQQSGE 332
		
		
	178#JEONG1266_00950	TYPE3OMOPROT#Type III secretion system outer membrane O protein ...	156	1e-47
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein
		           family signature.
		          Length = 303
		
		 Score =  156 bits (395), Expect = 1e-47
		 Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 13/292 (4%)
		
		Query: 35  KENGEDVALLMPEFSAKWLPIAEESGSWSGWVLLREIFPLISAELAGMALMPETERLIGE 94
		           + +G +  L  P     W+ +++    WS W+   +    +S  LAG A+    E L+  
		Sbjct: 23  QRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVP 82
		
		Query: 95  WLSLSSSPLNLKYPELKYNRLCVGKVFDGVLSPAQPLIRIWTGELNLWLDKVTVCQYENA 154
		           WL+ +  P  L  P L   RLCV     G   P   L+ I +    LW + +        
		Sbjct: 83  WLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGG 142
		
		Query: 155 PTLDKKSLYWPIHFVIGFSKTCYRTIVDIEVGDVLLISNNMAYAVIYNTKICDLIYPEEL 214
		                K L WP+ FVIG S T    +  I +GDVLLI  + A            +Y    
		Sbjct: 143 GRP--KMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTSRA-----------EVYCYAK 189
		
		Query: 215 KMADHFQYEEDFETDDFDIKKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEID 274
		           K+    + E     +  DI+  E E       + +    +LPVK+EFVL +K + L E++
		Sbjct: 190 KLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELE 249
		
		Query: 275 ELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGHNN 326
		            +  ++++SL   +E N+EI  NG L G GELV+++D LGVEIH WLS   N
		Sbjct: 250 AMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESGN 301
		
		
	179#JEONG1266_00955	TYPE3IMPPROT#Type III secretion system inner membrane P protein ...	226	2e-77
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein
		           family signature.
		          Length = 224
		
		 Score =  226 bits (577), Expect = 2e-77
		 Identities = 151/223 (67%), Positives = 181/223 (81%), Gaps = 5/223 (2%)
		
		Query: 1   MSNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLS 60
		           M N ISLIA+L+  TLLPFIIASGTCF+KFSIVFV+VRNALGLQQ+PSNMTLNGVALLLS
		Sbjct: 1   MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60
		
		Query: 61  MFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120
		           MFVM P+  + Y   ++E+++FN+++S+   V+ G+ GY+ YLIKYS+ ELV FFE  Q 
		Sbjct: 61  MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120
		
		Query: 121 VNSSEDNEEIIDDD-----NISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVL 175
		                +  E +  D       SIF+LLPAYALSEIKSAF IGFY+YLPFVVVDLV+SSVL
		Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180
		
		Query: 176 LTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLS 218
		           L LGMMMMSPVTISTPIKL+LFVA+DGWT+LSKGLILQY D++
		Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIA 223
		
		
	180#JEONG1266_00960	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	79	4e-23
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 78.7 bits (194), Expect = 4e-23
		 Identities = 59/86 (68%), Positives = 73/86 (84%)
		
		Query: 1  MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICF 60
		          MDD+VFAGN+ALYL+L++S  P  VAT +GLLVGLFQTVTQLQEQTLPFG+KLL V +C 
		Sbjct: 1  MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60
		
		Query: 61 FLMSGWYGEKLYSFGIEMLNLAFARG 86
		          FL+SGWYGE L S+G +++ LA A+G
		Sbjct: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86
		
		
	181#JEONG1266_00970	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	310	e-106
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score =  310 bits (796), Expect = e-106
		 Identities = 112/340 (32%), Positives = 185/340 (54%), Gaps = 5/340 (1%)
		
		Query: 2   ANKTEKPTQKKLQDASKKGQILKSRDLTVSVIMLVG--TLYLGYVFDVHHIMSILEYILD 59
		             KTE+PT KK++DA KKGQ+ KS+++  + +++     L     +   H   ++    +
		Sbjct: 3   GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62
		
		Query: 60  HNAKPDIWD---YFKAMGIGWLKTIIPFLLVCMFTTILVSWFQSKMQLATEAVKLKFDSL 116
		            +  P           + + +     P L V     I     Q    ++ EA+K     +
		Sbjct: 63  QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122
		
		Query: 117 NPVNGLKRIFGLKTVKEFVKAILYIIFFALEIKVFWSNHKSLLFKTLDGDIISLLSDWGE 176
		           NP+ G KRIF +K++ EF+K+IL ++  ++ I +    +   L +     I  +    G+
		Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182
		
		Query: 177 MLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGNPEIKSKRRERH 236
		           +L  L++ C    +++ I D+  EY+ ++K++KM K E+KREYKE EG+PEIKSKRR+ H
		Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242
		
		Query: 237 QEILSEQLKSDVSNSRLMIANPTHIAIGIYFKPHLSPIPLISVRETNEVALAVRKYAKEI 296
		           QEI S  ++ +V  S +++ANPTHIAIGI +K   +P+PL++ + T+     VRK A+E 
		Sbjct: 243 QEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEE 302
		
		Query: 297 GIPIITDKKLARKIYATHRRYDYVSFENIDEILRLLLWLE 336
		           G+PI+    LAR +Y       Y+  E I+    +L WLE
		Sbjct: 303 GVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
		
		
	186#JEONG1266_01000	FLGMRINGFLIF#Flagellar M-ring protein signature.	35	3e-04
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 34.6 bits (79), Expect = 3e-04
		 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
		
		Query: 4   ISLLLFILLLCGCKQQE-LLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTD 62
		           +++++ ++L         L ++L  Q    ++A L + NI     +       I V    
		Sbjct: 35  VAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA---IEVPADK 91
		
		Query: 63  FASAVDWLKIYNLPGKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIV 122
		                  L    LP    +    +   +    S  +E+     A+E  L ++++ +  + 
		Sbjct: 92  VHELRLRLAQQGLPKGGAVGFE-LLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVK 150
		
		Query: 123 SSRVHV 128
		           S+RVH+
		Sbjct: 151 SARVHL 156
		
		
JEONG1266_01420	JEONG1266_01465	N	Y	N	JEONG1266_01345	JEONG1266_01550
	JEONG1266_01420	-1	20	-3.066254	phosphopyruvate hydratase
	JEONG1266_01425	-1	20	-3.759635	hypothetical protein
	JEONG1266_01430	-1	20	-3.995461	hypothetical protein
	JEONG1266_01440	0	15	-3.546859	hypothetical protein
	JEONG1266_01445	-1	11	-2.660177	hypothetical protein
	JEONG1266_01450	-1	10	-1.059811	7-carboxy-7-deazaguanine synthase QueE
	JEONG1266_01455	-1	9	-0.560878	sugar kinase
	JEONG1266_01460	0	10	0.232732	hypothetical protein
	JEONG1266_01465	0	11	0.696444	oxidoreductase
	268#JEONG1266_01425	ANTHRAXTOXNA#Anthrax toxin LF subunit signature.	29	0.038
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.
		          Length = 800
		
		 Score = 29.3 bits (65), Expect = 0.038
		 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
		
		Query: 211 GYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLA-----GEGN 265
		              P L  N +  A+ +E  K   YE+GK I+L +         +   ++       + +
		Sbjct: 147 RETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSS 206
		
		Query: 266 KAFTSEEFTHFLEELTKQYPIVSIEDGLDESDW---DGFAYQTKVLG-DKIQLVGDDLFV 321
		               S++F   LE   K   I  I++ L E        F+Y         ++L   D+F 
		Sbjct: 207 DLLFSQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFE 266
		
		Query: 322 TNTKILKEGIEK 333
		              K+ K G EK
		Sbjct: 267 YMNKLEKGGFEK 278
		
		
	269#JEONG1266_01430	cloacin#Cloacin signature.	36	1e-04
		>cloacin#Cloacin signature.
		          Length = 551
		
		 Score = 36.2 bits (83), Expect = 1e-04
		 Identities = 17/31 (54%), Positives = 18/31 (58%)
		
		Query: 266 GSSSSSSGGGSSGGGSGGGFSGGGGSSGGGG 296
		           GS S    GG SG G+GGG    GG SG GG
		Sbjct: 49  GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79
		
		
		
		 Score = 36.2 bits (83), Expect = 1e-04
		 Identities = 14/33 (42%), Positives = 17/33 (51%)
		
		Query: 266 GSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           GS     GG   G G G G SGGG  +GG  ++
		Sbjct: 51  GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
		
		
		
		 Score = 35.5 bits (81), Expect = 2e-04
		 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
		
		Query: 266 GSSSSSSGGGSS-----GGGSGGGFSGGGGSSGGGGASG 299
		            S ++  GGGS      GGGSG G  GG G+SGGG  +G
		Sbjct: 40  SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78
		
		
		
		 Score = 30.8 bits (69), Expect = 0.007
		 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
		
		Query: 266 GSSSSSSGGGSS----GGGSGGGFSGGGGSSGGGGASG 299
		           G +S  SG  S     GGGSG G   GGGS  G G   
		Sbjct: 31  GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68
		
		
		
		 Score = 29.7 bits (66), Expect = 0.016
		 Identities = 13/35 (37%), Positives = 18/35 (51%)
		
		Query: 264 RKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           R  ++ + S  G+  GG  G   GGG S G G +S
		Sbjct: 7   RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS 41
		
		
		
		 Score = 28.1 bits (62), Expect = 0.048
		 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
		
		Query: 272 SGGGSSGGGSGGGFSGGGGSSGGGGAS 298
		           SG G+ GG    G  GG G+ G   A 
		Sbjct: 60  SGHGNGGGNGNSG--GGSGTGGNLSAV 84
		
		
	272#JEONG1266_01445	56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein sign...	27	0.047
		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein
		           signature.
		          Length = 533
		
		 Score = 27.2 bits (60), Expect = 0.047
		 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
		
		Query: 36  NASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDE 95
		           +AS  ++ ++ Q   D +  L  S  GY            +  +  N+   +    P  +
		Sbjct: 294 SASIEQIQSKIQELGDTLEELRDSFDGY------------INNAFVNQIHLNFVMPPQAQ 341
		
		Query: 96  QKLQAWQQAQAQVT 109
		           Q+    QQ QAQ T
		Sbjct: 342 QQQGQGQQQQAQAT 355
		
		
	275#JEONG1266_01460	TCRTETA#Tetracycline resistance protein signature.	29	0.029
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 29.4 bits (66), Expect = 0.029
		 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
		
		Query: 48  GLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVA 107
		           G++++ + +         G ++D+F  R ++  ++    +   +MAT P LWV+   ++ 
		Sbjct: 46  GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105
		
		Query: 108 FAITTILMLWSVSIKAASLLGD---HSEQGKIMGWMEGLRGVG 147
		             IT      +    A + + D     E+ +  G+M    G G
		Sbjct: 106 AGITG-----ATGAVAGAYIADITDGDERARHFGFMSACFGFG 143
		
		
	276#JEONG1266_01465	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	104	4e-29
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  104 bits (261), Expect = 4e-29
		 Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 11/257 (4%)
		
		Query: 11  MDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEN-QGVEVD 69
		           M+   ++GK A +TG   G+G+A A  LA  GA++    +  +  E        +    +
		Sbjct: 1   MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60
		
		Query: 70  FMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAA 129
		               D+    A  +I A      G +DILVN AG+ +   +      +W+    VN T  
		Sbjct: 61  AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120
		
		Query: 130 FELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNI 189
		           F  S   +K M+ ++SG I+ + S  + +      AY+++K A   FTK    EL +YNI
		Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180
		
		Query: 190 QVNGIAPGYYATDI--TLATRSNPETNQRVLDH-------IPANRWGDTQDLMGAAVFLA 240
		           + N ++PG   TD+  +L    N    Q +          IP  +     D+  A +FL 
		Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAE-QVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239
		
		Query: 241 SQASNYVNGHLLVVDGG 257
		           S  + ++  H L VDGG
		Sbjct: 240 SGQAGHITMHNLCVDGG 256
		
		
JEONG1266_01895	JEONG1266_01935	N	Y	N	JEONG1266_01795	JEONG1266_02025
	JEONG1266_01895	-2	13	1.304914	S-ribosylhomocysteinase
	JEONG1266_01900	-2	15	1.678773	multidrug resistance protein B
	JEONG1266_01905	-2	14	2.086961	multidrug export protein EmrA
	JEONG1266_01915	-1	14	1.664422	transcriptional repressor MprA
	JEONG1266_01925	-1	14	2.027092	valine transporter
	JEONG1266_01930	-2	13	1.161914	hypothetical protein
	JEONG1266_01935	-2	12	0.972725	transporter
	356#JEONG1266_01905	LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein Lu...	292	e-105
		>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS
		           signature.
		          Length = 171
		
		 Score =  292 bits (748), Expect = e-105
		 Identities = 130/170 (76%), Positives = 147/170 (86%)
		
		Query: 2   PLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFA 61
		           PLLDSFTVDHTRM APAVRVAKTM TP GD ITVFDLRF  PNK+++ E+GIHTLEHL+A
		Sbjct: 1   PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60
		
		Query: 62  GFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIP 121
		           GFMRNHLNG+ VEIIDISPMGCRTGFYMSLIGTP EQ+VAD W AAMEDVLKV++QN+IP
		Sbjct: 61  GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120
		
		Query: 122 ELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELALPKEKLQELHI 171
		           ELN YQCGT  MHSL EA+ IA++ILE  V +N N+ELALP+  L+EL I
		Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLRELRI 170
		
		
	357#JEONG1266_01910	TCRTETB#Tetracycline resistance protein TetB signature.	132	9e-36
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score =  132 bits (333), Expect = 9e-36
		 Identities = 97/405 (23%), Positives = 169/405 (41%), Gaps = 23/405 (5%)
		
		Query: 17  IALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRV 76
		           I L + +F  VL+  + NV++P IA +     +   WV T+F +  +I   + G L+ ++
		Sbjct: 17  IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76
		
		Query: 77  GEVKLFLWSTIAFAIASWACGVS-SSLNMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAK 135
		           G  +L L+  I     S    V  S  ++LI  R IQG  A     L   ++    P   
		Sbjct: 77  GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136
		
		Query: 136 RSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETR 195
		           R  A  L    V +    GP +GG I+   HW   + + +P+   + +  L  L  +E R
		Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVR 194
		
		Query: 196 TERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTD 255
		             +   D  G+ L+ +GI  +  ML        F++   I   +V+V++    +      
		Sbjct: 195 I-KGHFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKV 243
		
		Query: 256 DNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGI 315
		            +P VD  L K+  F IG LC  + +    G + ++P ++++V+  +    G      G 
		Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303
		
		Query: 316 IPVILS-PIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGF- 373
		           + VI+   I G    +     ++       +V F   ++          S +   I  F 
		Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-----LETTSWFMTIIIVFV 358
		
		Query: 374 --AVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSI 416
		              ++     ++TI  S L  +   A  SL NFT  L+   G +I
		Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
		
		
	358#JEONG1266_01915	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	74	2e-16
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 74.1 bits (182), Expect = 2e-16
		 Identities = 64/412 (15%), Positives = 117/412 (28%), Gaps = 97/412 (23%)
		
		Query: 25  LLLTLLFIIIAVAIGIYWFLVLRHFEETDDA----YVAGNQIQIMSQVSGSVTKVWADNT 80
		             L   FI+  + I      VL   E    A      +G   +I    +  V ++     
		Sbjct: 57  PRLVAYFIMGFLVIAFILS-VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115
		
		Query: 81  DFVKEGDVLVTLDPTD-------------------------------------------- 96
		           + V++GDVL+ L                                                
		Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175
		
		Query: 97  ---ARQAFEKAKTALASSVRQTHQQMINSKQ------------LQANIEVQKIALAKAQS 141
		                +      T+L      T Q     K+            + A I   +      +S
		Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235
		
		Query: 142 DYNRRVPLGNANLIGREELQHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQ 201
		             +    L +   I +  +    +    A  +L V   Q    ++ IL  K E Q   Q 
		Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295
		
		Query: 202 AATEVRN------------------AWLALERTRIVSPMTGYVSRRAVQ-PGAQISPTTP 242
		              E+ +                       + + I +P++  V +  V   G  ++    
		Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
		
		Query: 243 LMAVVPA-TNMWVDANFKETQIANMRIGQPVTITTDIYGDDVKY---TGKVVGLDMGTGS 298
		           LM +VP    + V A  +   I  + +GQ   I  + +    +Y    GKV  +     +
		Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF-PYTRYGYLVGKVKNI-----N 409
		
		Query: 299 AFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYPLRIGLSTLVSVNTTNR 350
		             ++       G    V+  +           +  PL  G++    + T  R
		Sbjct: 410 LDAIE--DQRLGLVFNVIISIEENCLST--GNKNIPLSSGMAVTAEIKTGMR 457
		
		
	359#JEONG1266_01920	PF05272#Virulence-associated E family protein	28	0.017
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 28.5 bits (63), Expect = 0.017
		 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
		
		Query: 23  PYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMALITLESQENHSIQPSELSCALG 82
		           P QE+ L    +  +   L  R     A+G  +  +    T  +        ++L  ALG
		Sbjct: 756 PEQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTI-------ADLVQALG 808
		
		Query: 83  -----SSRTNATRIADELEKRGWIERRESDNDRR 111
		                SS     ++ D L + GW   RE+   RR
		Sbjct: 809 ADPGKSSPMLEGQVRDWLNENGWEYLRETSGQRR 842
		
		
	362#JEONG1266_01935	TCRTETB#Tetracycline resistance protein TetB signature.	45	4e-07
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 44.9 bits (106), Expect = 4e-07
		 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
		
		Query: 34  LDTIARNFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLIT 93
		           L  IA +F+   +S  ++ TA  L ++ G      L D    +RL++   ++   G +I 
		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96
		
		Query: 94  ASSQSLA-MMILGTALTGLFSVVAQILVPLA-ATLASPDKRGKVVGTIMSGLLLGILLAR 151
		               S   ++I+   + G  +     LV +  A     + RGK  G I S + +G  +  
		Sbjct: 97  FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156
		
		Query: 152 TVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNY 196
		            + G++A+   W  +  +  + +  +   +     +++ + H + 
		Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201
		
		
JEONG1266_03510	JEONG1266_03525	N	Y	N	JEONG1266_03435	JEONG1266_03635
	JEONG1266_03510	-1	31	-8.493330	two-component system sensor histidine kinase
	JEONG1266_03515	-2	28	-5.805448	DNA-binding response regulator
	JEONG1266_03520	-1	24	-4.090614	multidrug export protein EmrA
	JEONG1266_03525	0	24	-2.394280	multidrug resistance protein B
	659#JEONG1266_03510	HTHFIS#FIS bacterial regulatory protein HTH signature.	76	2e-16
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 76.4 bits (188), Expect = 2e-16
		 Identities = 30/105 (28%), Positives = 51/105 (48%)
		
		Query: 890 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFE 949
		           +IL+ADD    R +L + L+  GYDV   ++       ++    DL++TDV MP+ + F+
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 950 LTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLD 994
		           L  ++++    LP+  ++A        K    G    L KP  L 
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
		
		
	660#JEONG1266_03515	HTHFIS#FIS bacterial regulatory protein HTH signature.	49	3e-09
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 49.1 bits (117), Expect = 3e-09
		 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
		
		Query: 4   IIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQV 63
		           ++ DD       +   L +   ++    +   +  + +     D+V+ DV +P  N   +
		Sbjct: 7   LVADDDAAIRTVLNQALSRAGYDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65
		
		Query: 64  LETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 123
		           L  ++K +    ++++SA+N                          + AI+A++ G   +
		Sbjct: 66  LPRIKKARPDLPVLVMSAQNT------------------------FMTAIKASEKGAYDY 101
		
		Query: 124 ---PFSLNRFVGSLTSDQQKLDSLSKQE 148
		              PF L      +    + L    ++ 
		Sbjct: 102 LPKPFDLTE---LIGIIGRALAEPKRRP 126
		
		
	661#JEONG1266_03520	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	79	5e-18
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 78.7 bits (194), Expect = 5e-18
		 Identities = 63/412 (15%), Positives = 122/412 (29%), Gaps = 96/412 (23%)
		
		Query: 13  RRKYFSLLAIVLFIAFSGAYAYWSMELEDMISTDDAYVT-GNADPISAQVSGSVTVVNHK 71
		           RR       I+ F+  +   +    ++E + + +      G +  I    +  V  +  K
		Sbjct: 55  RRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113
		
		Query: 72  DTNYVRQGDILVSLDKTDATIALNKA---------------------------------- 97
		           +   VR+GD+L+ L    A     K                                   
		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173
		
		Query: 98  ------------------KNNLANIVRQTNKLYLQDKQYSAEVASARIQ---YQQSLEDY 136
		                             K   +    Q  +  L   +  AE  +   +   Y+      
		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233
		
		Query: 137 NRRV----PLAKQGVISKE----------TLEHTKDTLISSKAALNAAIQAYKANKALVM 182
		             R+     L  +  I+K              +      S    + + I + K    LV 
		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
		
		Query: 183 N-------TPLNR-QPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQ-VGETVSPG 233
		                     L +    +        +     + + I++PV+  + Q  V   G  V+  
		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
		
		Query: 234 QSLMAVVPARQ-MWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNA 292
		           ++LM +VP    + V A  +   +  + +GQ+  I  +       F     G  +G    
		Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE------AFPYTRYGYLVGK--- 404
		
		Query: 293 FSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEH----PLRIGLSMTATIDT 340
		              +         + +V  V   +S++   L       PL  G+++TA I T
		Sbjct: 405 VKNINLDAIEDQRLGLVFNVI--ISIEENCLSTGNKNIPLSSGMAVTAEIKT 454
		
		
	662#JEONG1266_03525	TCRTETB#Tetracycline resistance protein TetB signature.	120	1e-31
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score =  120 bits (302), Expect = 1e-31
		 Identities = 97/408 (23%), Positives = 169/408 (41%), Gaps = 25/408 (6%)
		
		Query: 19  VTIALSLATFMQMLDSTISNVAIPTISGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQ 78
		           + I L + +F  +L+  + NV++P I+           WV T+F +  +I   V G+L+ 
		Sbjct: 15  ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74
		
		Query: 79  RIGELRLFLLSVTFFSLSSLMCSLSIN-LDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPP 137
		           ++G  RL L  +      S++  +  +   +LI  R +QG  A     L   ++ R  P 
		Sbjct: 75  QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134
		
		Query: 138 EKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRE 197
		           E R  A  L    V +    GP +GG I     W   +L+ +PM  I+    L  L  +E
		Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKE 192
		
		Query: 198 TETSPVKMNLPGLTLLVLGVGGLQIMLDKGRDLDWFNSSTIIILTVVSVIFLISLVIWES 257
		                   ++ G+ L+ +G+  +  ML        F +S  I   +VSV+  +  V    
		Sbjct: 193 VRIKG-HFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIR 241
		
		Query: 258 TSENPILDLSLFKSRNFTIGIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPI 317
		              +P +D  L K+  F IG++     +   +G + ++P ++++    +    G      
		Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301
		
		Query: 318 GIMPLLISPLIG-----RYGNKIDMRVLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQ 372
		           G M ++I   IG     R G    + + VTF     +V +   S     T  F  II+  
		Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL----SVSFLTASFLLETTSWFMTIIIVF 357
		
		Query: 373 FFQGFAVACFFLPLTTISFSGLPDNKFANASSMSNFFRTLSGSVGTSL 420
		              G +       ++TI  S L   +     S+ NF   LS   G ++
		Sbjct: 358 VLGGLSFTK--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
		
		
JEONG1266_04120	JEONG1266_04150	N	Y	N	JEONG1266_04040	JEONG1266_04240
	JEONG1266_04120	1	18	1.078248	outer membrane usher protein
	JEONG1266_04125	2	26	-2.442268	fimbrial protein
	JEONG1266_04130	4	32	-5.394953	fimbrial protein
	JEONG1266_04135	3	31	-5.021135	fimbrial protein
	JEONG1266_04140	0	20	-3.178045	fimbrial protein
	JEONG1266_04145	-1	14	-1.308116	hypothetical protein
	JEONG1266_04150	-2	13	-0.378916	fimbrial protein
	776#JEONG1266_04120	PF00577#Outer membrane usher protein FimD	749	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score =  749 bits (1935), Expect = 0.0
		 Identities = 218/884 (24%), Positives = 380/884 (42%), Gaps = 69/884 (7%)
		
		Query: 5   SLFRLRVLPCCVALAMSGSYVNAWAENEIQFDSRFLELKGDTKIELKRFSSQGYVEPGKY 64
		              RL      + +A + +     +  E+ F+ RFL        +L RF +   + PG Y
		Sbjct: 19  RKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTY 78
		
		Query: 65  NLQVQLNKQPLTEEYDIYWYASENDASKTYACLTPELVAQFGLKEDVAKNLQWIHDGKCL 124
		            + + LN   +    D+ +   +++      CLT   +A  GL       +  + D  C+
		Sbjct: 79  RVDIYLNNGYMAT-RDVTFNTGDSEQG-IVPCLTRAQLASMGLNTASVSGMNLLADDACV 136
		
		Query: 125 KPGQL-EGIDIKADLSQSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSITAQTR 183
		               +      + D+ Q  L +++PQA++      + PP  WD GI+  + +Y+ +  + 
		Sbjct: 137 PLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSV 196
		
		Query: 184 HEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRY 243
		               GG+ S+    N   G+N+GAWRLR +    Y  S S+          +  W+    
		Sbjct: 197 QNRIGGN-SHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGS-------KNKWQHINT 248
		
		Query: 244 YAWRALPSLKAKLGLGEDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTT 303
		           +  R +  L+++L LG+ Y   DIFDG N+ G  +++DD MLP + RG+AP I G+A  T
		Sbjct: 249 WLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGT 308
		
		Query: 304 AKVTVSQLGRVIYETQVPAGPFRIQDL-GDSVSGTLHIRIEEQNGQVQEYDINTASMPFL 362
		           A+VT+ Q G  IY + VP GPF I D+     SG L + I+E +G  Q + +  +S+P L
		Sbjct: 309 AQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLL 368
		
		Query: 363 TRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAALGVG 422
		            R G  RY +  G  +      E   F       G+  GW++YGG    + Y++   G+G
		Sbjct: 369 QREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIG 428
		
		Query: 423 RDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSE 482
		           +++   GA++ D+T +++ L           DG S R  Y+K  +E  + +   GYR+S 
		Sbjct: 429 KNMGALGALSVDMTQANSTLP-----DDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYST 483
		
		Query: 483 ENFMTMSEYLDASDSEMVRTGND-------------------KEMYTATYNQNFRDAGVS 523
		             +   ++   +  +       D                   +     T  Q       +
		Sbjct: 484 SGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTS-T 542
		
		Query: 524 VYLNYTRHTYWD-RDEQTNYNVMLSHYFNLGSIRNMSISMTGYRYEYDNQADKGVYISLS 582
		           +YL+ +  TYW   +    +   L+  F   +    ++S +  +  +    D+ + ++++
		Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLNTAFEDIN---WTLSYSLTKNAWQKGRDQMLALNVN 599
		
		Query: 583 MPWGD-----------SSTISYNGNYGS-GSDSSQVGYFSRV--DDATHYQLNVGTSD-- 626
		           +P+              ++ SY+ ++   G  ++  G +  +  D+   Y +  G +   
		Sbjct: 600 IPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGG 659
		
		Query: 627 ---NHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAGISLQGGATLTAQGGALHRTQNMGG 683
		              + S+     ++ G     ++    H          + GG    A G  L   Q +  
		Sbjct: 660 DGNSGSTGYATLNYRGGYGNANIGY-SHSDDIKQLYYGVSGGVLAHANGVTLG--QPLND 716
		
		Query: 684 TRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEATQSV 743
		           T +L+ A G     VE N   V T+  G AV+     Y  N+  +D N L +N +   +V
		Sbjct: 717 TVVLVKAPGAKDAKVE-NQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAV 775
		
		Query: 744 VQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGNVYL 803
		                T GAI   +F    G K +  L   +    PFGA V ++S+Q+ G+V D+G VYL
		Sbjct: 776 ANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYL 834
		
		Query: 804 AGVKPGEHMIVSWG--GVAHC--DIHLPDPLPADLFNGLLLPCQ 843
		           +G+     + V WG    AHC  +  LP      L   L   C+
		Sbjct: 835 SGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		
		
	779#JEONG1266_04135	FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein...	45	1e-08
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein
		           signature.
		          Length = 167
		
		 Score = 44.7 bits (105), Expect = 1e-08
		 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
		
		Query: 1   MKRISL---LMLWSFSFMALSNVSFHGYLVQPPNCSISNGQNIELTFRDVNIDDINGSNY 57
		           M R+SL   L+L S + +A   ++  G +  PP C+I+NGQNI + F ++N + ++ S  
		Sbjct: 1   MIRLSLFISLLLTSVAVLADVQINIRGNVYIPP-CTINNGQNIVVDFGNINPEHVDNSRG 59
		
		Query: 58  EQVVPYTITCDTAVRDPQMEMTLTWSGTQSDFDDSAVATDLNGLGIHLKQ---------- 107
		           E     +I+C        +++T     T     ++ +AT++   GI L Q          
		Sbjct: 60  EVTKNISISCPYKSGSLWIKVT---GNTMGVGQNNVLATNITHFGIALYQGKGMSTPLTL 116
		
		Query: 108 ---AGSDFKLHTPLVVNETSLPVLTAVPVKKSGVDLPESDFEAWATLQVDY 155
		              +G+ +++   L    ++    T+VP +     L   DF   A++ + Y
		Sbjct: 117 GNGSGNGYRVTAGLDTARSTF-TFTSVPFRNGSGILNGGDFRTTASMSMIY 166
		
		
	780#JEONG1266_04140	FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein...	28	0.001
		>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein
		          signature.
		          Length = 173
		
		 Score = 28.1 bits (62), Expect = 0.001
		 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
		
		Query: 1  MKNNRAWAL--ISGLILFSGTAPAADNLHFTGNLLGKSCT 38
		          MK  R   L  + G +L S    AADNL F G L+  +CT
		Sbjct: 1  MKKIRGLCLPVMLGAVLMSQHVHAADNLTFKGKLIIPACT 40
		
		
	782#JEONG1266_04150	FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein...	33	2e-04
		>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein
		           signature.
		          Length = 173
		
		 Score = 33.5 bits (76), Expect = 2e-04
		 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 24/184 (13%)
		
		Query: 1   MKNNRAWAL--ISGLILFSGTAPAADNLHFTGNLLGKSCTPVINGNLLAEIHFPTIAASD 58
		           MK  R   L  + G +L S    AADNL F G L+  +CT V N    AE+++  I   +
		Sbjct: 1   MKKIRGLCLPVMLGAVLMSQHVHAADNLTFKGKLIIPACT-VQN----AEVNWGDIEIQN 55
		
		Query: 59  LMQRGQSDRVPLV-----FQLKDCK----STTAFNVKVTLMGTEDTDLPGFLSIDSSSSA 109
		           L+Q G + +   V     + L   K    S       + +  T      G L    +S+ 
		Sbjct: 56  LVQSGGNQKDFTVDMNCPYSLGTMKVTITSNGQTGNSILVPNTSTASGDGLLIYLYNSNN 115
		
		Query: 110 TGVGIGIETAGGAAVPINSTTGASFPLNQGNNSVNFNAWL-QTVNGRNVTSGDFTATMTV 168
		           +G+G  + T G    P    TG           +   A L    N +++ +G F+AT T+
		Sbjct: 116 SGIGNAV-TLGSQVTP-GKITG-----TAPARKITLYAKLGYKGNMQSLQAGTFSATATL 168
		
		Query: 169 TFEY 172
		              Y
		Sbjct: 169 VASY 172
		
		
JEONG1266_05160	JEONG1266_05190	N	Y	N	JEONG1266_05085	JEONG1266_05280
	JEONG1266_05160	0	17	2.350487	tRNA dihydrouridine synthase DusC
	JEONG1266_05165	1	16	1.727565	hypothetical protein
	JEONG1266_05170	0	13	1.676700	multidrug transporter permease
	JEONG1266_05175	-2	16	1.588642	oxidoreductase
	JEONG1266_05180	-3	15	1.434274	hypothetical protein
	JEONG1266_05185	-3	15	2.004156	hypothetical protein
	JEONG1266_05190	-2	15	2.224795	D-alanyl-D-alanine endopeptidase
	979#JEONG1266_05160	SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein s...	29	0.030
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein
		           signature.
		          Length = 347
		
		 Score = 28.6 bits (64), Expect = 0.030
		 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
		
		Query: 122 GAKAMREAVPAHLPVSVKVRLGWDSGEK-KFEIADAVQQAGATELVVHGRTKEQGY-RAE 179
		           G     EA+  ++  +    +G  + E+ K EI  A       E+ V GR   +G  R  
		Sbjct: 190 GGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGF 249
		
		Query: 180 HIDWQAIGE-IRQRLNIPVIANGEIWDWQSAQECMAISGCDSVMIGRGALNIPNLSRVVK 238
		            ++   I E +++ L   V A     +    +    IS    V+ G GAL + NL R++ 
		Sbjct: 250 TLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL-LRNLDRLL- 307
		
		Query: 239 YNEPRMP 245
		             E  +P
		Sbjct: 308 MEETGIP 314
		
		
	982#JEONG1266_05175	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	113	1e-32
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  113 bits (284), Expect = 1e-32
		 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 12/253 (4%)
		
		Query: 3   QVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLG 62
		           ++A IT +  GIG+  A  LA QG  I    ++ E+  K  +         AE    D+ 
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKA-EARHAEAFPADVR 67
		
		Query: 63  NLPEGAQALEKLIQRLGRIDVLVNNAGAMTKVPFLDMAFDEWRKIFTVDVDGAFLCSQIA 122
		           +     +   ++ + +G ID+LVN AG +       ++ +EW   F+V+  G F  S+  
		Sbjct: 68  DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127
		
		Query: 123 ARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVA 182
		           ++ M+ + + G I+ + S     P    +AY ++K A    TK + LEL  + I  N V+
		Sbjct: 128 SKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186
		
		Query: 183 PGAIATPM-------NGMDDSDVKPDAEP---SIPLRRFGATHEIASLVAWLCSEGANYT 232
		           PG+  T M           +  +K   E     IPL++     +IA  V +L S  A + 
		Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246
		
		Query: 233 TGQSLIVDGGFML 245
		           T  +L VDGG  L
		Sbjct: 247 TMHNLCVDGGATL 259
		
		
	983#JEONG1266_05180	BCTERIALGSPF#Bacterial general secretion pathway protein F signa...	28	0.020
		>BCTERIALGSPF#Bacterial general secretion pathway protein F
		           signature.
		          Length = 408
		
		 Score = 28.3 bits (63), Expect = 0.020
		 Identities = 5/33 (15%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
		
		Query: 152 WLHNLDQHLKHW-VWLILVVVL-VVGVRWWLKR 182
		            L  +   ++ +  W++L ++   +  R  L++
		Sbjct: 215 VLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQ 247
		
		
	985#JEONG1266_05190	BLACTAMASEA#Beta-lactamase class A signature.	44	3e-07
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 44.0 bits (104), Expect = 3e-07
		 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 18/195 (9%)
		
		Query: 1   MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMI-VDLNTNKVIYSNHP 59
		           M   R+ + SL  +  +PLA  A  +       S+ +++    MI +DL + + + +   
		Sbjct: 1   MRYIRLCIISL--LATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRA 58
		
		Query: 60  DLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRV---RLNSEISRKDM 116
		           D   P+ S  K++    VL      DE+L+  I    +    YS V    L   ++  ++
		Sbjct: 59  DERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGEL 118
		
		Query: 117 LLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFV--EPTGLS-----V 169
		              A+  S+N +AA+L     GG       + A  + +G N TR    E           
		Sbjct: 119 CAAAITMSDN-SAANLLLATVGG----PAGLTAFLRQIGDNVTRLDRWETELNEALPGDA 173
		
		Query: 170 HNVSTARDLTKLLIA 184
		            + +T   +   L  
		Sbjct: 174 RDTTTPASMAATLRK 188
		
		
JEONG1266_05575	JEONG1266_05610	N	Y	N	JEONG1266_05495	JEONG1266_05695
	JEONG1266_05575	-2	14	1.875830	enterobacterial Ail/Lom family protein
	JEONG1266_05580	-2	16	1.278915	phage tail protein
	JEONG1266_05585	-2	14	-2.482679	phage tail protein
	JEONG1266_05590	0	14	-0.414906	damage-inducible protein DinI
	JEONG1266_05595	0	14	0.374515	histidine kinase
	JEONG1266_05600	2	16	1.335578	two-component system response regulator YehT
	JEONG1266_05605	3	17	2.216897	hypothetical protein
	JEONG1266_05610	2	18	2.589108	hypothetical protein
	1058#JEONG1266_05575	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	141	3e-45
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  141 bits (358), Expect = 3e-45
		 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
		
		Query: 7   VILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG-SDDLNGINVKYRYEFMDA-LG 64
		           +   + +  V A T  ++    ST++ GY  A ++  G  + + G N+KYRYE  ++ LG
		Sbjct: 4   IACLSALAAVLAFTAGTSVAATSTVTGGY--AQSDAQGQMNKMGGFNLKYRYEEDNSPLG 61
		
		Query: 65  LITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRV 124
		           +I SF+Y        T  S T    D  +N+++ + AGP+ R+N+W S Y + GV Y + 
		Sbjct: 62  VIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKF 113
		
		Query: 125 STFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGSGSG 184
		            T        T+     HD          S+   ++GAG+QFNP E+VA+D +YE S   
		Sbjct: 114 QT--------TEYPTYKHD---------TSDYGFSYGAGLQFNPMENVALDFSYEQSRIR 156
		
		Query: 185 DWRTDGFIVGVGYKF 199
		                 +I GVGY+F
		Sbjct: 157 SVDVGTWIAGVGYRF 171
		
		
	1059#JEONG1266_05580	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	39	4e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 38.9 bits (90), Expect = 4e-05
		 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 30/289 (10%)
		
		Query: 9    LKDGTGKPVENCTIQLKARRNSATVVVNTVASENPDE-AGRYSMDVEYGQYSVILLVEGF 67
		            + D TG+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 68   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 127
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 128  ETSARNAGISSSKAEASAANADTSAGDALESARQAA-ESAAAAKQSEDASSSSASAAAQK 186
		            ET A N+   S   E +  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 187  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 228
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 229  AQSAEQSRIAAEEAVNRIPTVVGPPGPKGEQGPAGPQGPKGDKGERGDT 277
		             QS   +    E+      + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	1062#JEONG1266_05595	PF06580#Sensor histidine kinase	219	8e-69
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  219 bits (560), Expect = 8e-69
		 Identities = 63/216 (29%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
		
		Query: 343 LGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQA 402
		           L  G     + +       +  +M  ++++  L AQ+NPHF+FNALN I+A+I  D  +A
		Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKA 193
		
		Query: 403 SQLVQYLSTFFRKNLKR-PSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQ 461
		            +++  LS   R +L+   +  V+LADE+  V++YLQ+   +F+ RLQ    I   +   
		Sbjct: 194 REMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDV 253
		
		Query: 462 QLPAFTLQPIVENAIKHGTSQLLDTGRVAISVRREGQHLMLEIEDNAGL-YQPVTNASGL 520
		           Q+P   +Q +VEN IKHG +QL   G++ +   ++   + LE+E+   L  +    ++G 
		Sbjct: 254 QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313
		
		Query: 521 GMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLP 556
		           G+  V +RL+  +G +  I ++ +        + +P
		Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
		
		
	1063#JEONG1266_05600	HTHFIS#FIS bacterial regulatory protein HTH signature.	71	1e-16
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 71.4 bits (175), Expect = 1e-16
		 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
		
		Query: 2   IKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 61
		             +L+ DD+   R  L   L  ++  ++    SNA      +     D++  D+ MP  +
		Sbjct: 4   ATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61
		
		Query: 62  GLEMVGMLDPEHRPYI--VFLTAFD--EYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQ 117
		             +++  +  + RP +  + ++A +    AIKA E+ A+DYL KP D   L   + R   
		Sbjct: 62  AFDLLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
		
		Query: 118 ERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVT--SHEGKE 172
		           E  ++   L  ++Q  +  +   G S       + +A +      + +T  S  GKE
		Sbjct: 121 EPKRRPSKLEDDSQDGMPLV---GRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174
		
		
	1065#JEONG1266_05610	INTIMIN#Intimin signature.	27	0.028
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 27.3 bits (60), Expect = 0.028
		 Identities = 19/94 (20%), Positives = 31/94 (32%)
		
		Query: 36  LNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKL 95
		           +   + AITY  K  K  K  S  ++ F +          KT     AK    +    K 
		Sbjct: 671 VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKS 730
		
		Query: 96  TYTDTYAQENVTIDMEKVDFKALQGISGINVSAE 129
		             +   +   V +   +V+F     I   N+   
		Sbjct: 731 LVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIV 764
		
		
JEONG1266_06035	JEONG1266_06105	N	Y	N	JEONG1266_05960	JEONG1266_06155
	JEONG1266_06035	-3	18	3.176828	phage tail tape measure protein
	JEONG1266_06040	-3	15	2.354889	phage tail protein
	JEONG1266_06045	-2	16	2.631319	hypothetical protein
	JEONG1266_06050	-2	18	3.406622	U32 family peptidase
	JEONG1266_06055	-2	19	3.998844	hypothetical protein
	JEONG1266_06060	-2	18	4.162320	two-component system response regulator BaeR
	JEONG1266_06065	-3	18	4.071572	two-component system sensor histidine kinase
	JEONG1266_06070	-3	17	3.876386	multidrug transporter subunit MdtD
	JEONG1266_06075	-3	14	3.211846	multidrug transporter subunit MdtC
	JEONG1266_06080	-3	13	2.839743	multidrug transporter subunit MdtB
	JEONG1266_06085	-1	13	1.704298	multidrug transporter subunit MdtA
	JEONG1266_06090	0	15	1.517086	hypothetical protein
	JEONG1266_06095	-1	13	1.440841	hypothetical protein
	JEONG1266_06100	-1	11	1.398919	hypothetical protein
	JEONG1266_06105	-1	14	2.350583	molecular chaperone
	1149#JEONG1266_06035	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	33	0.005
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 32.9 bits (75), Expect = 0.005
		 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 8/173 (4%)
		
		Query: 8   QVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRELNGQASRIEGFRKTSAQLAVTGH 67
		            VLL+     +    +    ++S     R  Q   + L+      +             +
		Sbjct: 122 DVLLKLTALGAE---ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178
		
		Query: 68  ALEKARQEAEALATQFKNTERPTRAQAKV-LESAKRAAEDLQAKYNRLTDSVKRQQRELA 126
		             E+      +L  +  +T +  + Q ++ L+  +     + A+ NR  +  + ++  L 
		Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238
		
		Query: 127 AVGINTRNLAHDELGLKNRISETTAQLNRQRDALARVSAQQAKLNAVKQRYQA 179
		                  +L H +   K+ + E   +     + L    +Q  ++ +     + 
		Sbjct: 239 DF----SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287
		
		
	1154#JEONG1266_06060	HTHFIS#FIS bacterial regulatory protein HTH signature.	76	4e-18
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 76.0 bits (187), Expect = 4e-18
		 Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
		
		Query: 11  PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGL 70
		             IL+ +D+  +  +L   L  A Y   + S+   +  ++     DL++ D+++P  +  
		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 71  TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129
		            L   I+    D+P+++++A+   +  +   E GA DY+ KP+   E++  +   L   K
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
		
		Query: 130 PQRELQQQDAESPLII 145
		            +    + D++  + +
		Sbjct: 124 RRPSKLEDDSQDGMPL 139
		
		
	1155#JEONG1266_06065	BCTERIALGSPF#Bacterial general secretion pathway protein F signa...	31	0.009
		>BCTERIALGSPF#Bacterial general secretion pathway protein F
		           signature.
		          Length = 408
		
		 Score = 31.3 bits (71), Expect = 0.009
		 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 27/93 (29%)
		
		Query: 173 LATLLAALATFLLA-------------RGLLAPVKRLVDGTHKLAAGDFTTRVTPTSEDE 219
		           LATL+AA      A               L+A V+  V   H LA      +  P S + 
		Sbjct: 77  LATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD---AMKCFPGSFER 133
		
		Query: 220 L-----------GKLAQDFNQLASTLEKNQQMR 241
		           L           G L    N+LA   E+ QQMR
		Sbjct: 134 LYCAMVAAGETSGHLDAVLNRLADYTEQRQQMR 166
		
		
	1156#JEONG1266_06070	TCRTETB#Tetracycline resistance protein TetB signature.	126	8e-34
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score =  126 bits (317), Expect = 8e-34
		 Identities = 97/429 (22%), Positives = 188/429 (43%), Gaps = 23/429 (5%)
		
		Query: 20  FMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFF 79
		           F   L+  ++N +LP +A    + P   + V  +++LT ++     G L+D++G++ +  
		Sbjct: 24  FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83
		
		Query: 80  TAIVLFTLGSLFCALSGTLNELL-LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTF 138
		             I++   GS+   +  +   LL +AR +QG G A    +  + V + +P+E    A   
		Sbjct: 84  FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143
		
		Query: 139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLM-LMPNYTMQTRRFDL 197
		           +     +G  +GPA+GG++  Y   HW +L+ IP+  I  +  LM L+         FD+
		Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201
		
		Query: 198 SGFLLLAVGMAVLTLALDGSKGTGLSPLAITGLVAVGVVALVLYLLHARNNNRALFSLKL 257
		            G +L++VG+    L          +       + V V++ ++++ H R          L
		Sbjct: 202 KGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252
		
		Query: 258 FRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRI 316
		            +   F +G+               M P  ++     S    G +++ P  +  +    I
		Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312
		
		Query: 317 VVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALL----GWYYVLPFVLFLQGMVNSTRFS 372
		              +V+R G   VL    +G++ +++ F+T + L     W+  +  V  L G+  S   +
		Sbjct: 313 GGILVDRRGPLYVL---NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL--SFTKT 367
		
		Query: 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSSTTQTVF 432
		            ++T+    L    A +G SLL+    LS   G+ I G LL +       +     Q+ +
		Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTY 427
		
		Query: 433 MYTWLSMAF 441
		           +Y+ L + F
		Sbjct: 428 LYSNLLLLF 436
		
		
	1157#JEONG1266_06075	ACRIFLAVINRP#Acriflavin resistance protein family signature.	922	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score =  922 bits (2384), Expect = 0.0
		 Identities = 289/1035 (27%), Positives = 507/1035 (48%), Gaps = 36/1035 (3%)
		
		Query: 6    LFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65
		             FI RP+   +L++ + + G L    LPVA  P +  P + VSA+ PGA  +T+  +V  
		Sbjct: 4    FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63
		
		Query: 66   PLERSLGRIAGVSEMTSSS-SLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMP 124
		             +E+++  I  +  M+S+S S GS  I L F    D + A   VQ  +  A  LLP  + 
		Sbjct: 64   VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123
		
		Query: 125  SRPTYRKANPSDAPIMILTLTSDT--YSQGELYDFASTQLAPTISQIDGVGDVDVGGSSL 182
		             +        S + +M+    SD    +Q ++ D+ ++ +  T+S+++GVGDV + G+  
		Sbjct: 124  -QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182
		
		Query: 183  PAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG------ALEDGTHRWQIQTNDELK 236
		             A+R+ L+   L    ++  DV   +   N +   G      AL        I      K
		Sbjct: 183  -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241
		
		Query: 237  TAAEYQPLIIHYN-NGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQ 295
		               E+  + +  N +G  VRL DVA V    ++       N KPA  L I+    AN + 
		Sbjct: 242  NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301
		
		Query: 296  TVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRS 355
		            T  +I+AKL ELQ   P  + +    D +P ++ S+ EV +TL  ++ LV LV++LFL++
		Sbjct: 302  TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361
		
		Query: 356  GRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHL- 414
		             RAT+IP +AVPV L+GTFA +   G+S+N L++  + +A G +VDDAIVV+EN+ R + 
		Sbjct: 362  MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421
		
		Query: 415  EAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGIS 474
		            E  + P +A  +   ++   ++ +++ L AVF+P+   GG  G + R+F++T+  A+ +S
		Sbjct: 422  EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481
		
		Query: 475  LLVSLTLTPMMCGWMLKASKPREQKRLRGFG----RMLVALQQGYGKSLKWVLNHTRLVG 530
		            +LV+L LTP +C  +LK       +   GF              Y  S+  +L  T    
		Sbjct: 482  VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541
		
		Query: 531  MVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQ----AMRGKLQDFMKII 586
		            ++    +A  + L++ +P +F PE+D GV +  IQ     + +     +      ++K  
		Sbjct: 542  LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601
		
		Query: 587  RD-DPAVDNVTGFT-GGSRVNSGMMFITLKPRDERS---ETAQQIIDRLRVKLAKEPGAN 641
		            +    +V  V GF+  G   N+GM F++LKP +ER+    +A+ +I R +++L K     
		Sbjct: 602  KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661
		
		Query: 642  LFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKKLATL-----PELADVNSD 696
		            +    +  I   G  +   ++   L D      +   + R +L  +       L  V  +
		Sbjct: 662  VIPFNMPAIVELGTATGFDFE---LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718
		
		Query: 697  QQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRY 756
		              ++ A+  L  D++    LG+ +   N  ++ A G   ++         K+ ++ D ++
		Sbjct: 719  GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778
		
		Query: 757  TQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSD 816
		                  ++K++V +  G+ +P S F           +       +  I      G S  D
		Sbjct: 779  RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838
		
		Query: 817  ASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVH 876
		            A A ++   ++L  P+ +   + G +   + + N    L+  +   V++ L  LYES+  
		Sbjct: 839  AMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896
		
		Query: 877  PLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGN 936
		            P++++  +P   VG LLA  LFN    +  ++G++  IG+  KNAI++V+FA +      
		Sbjct: 897  PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956
		
		Query: 937  LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLL 996
		                EA   A  +R RPI+MT+LA + G LPL +S G GS  +  +GI ++GG+V + LL
		Sbjct: 957  KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016
		
		Query: 997  TLYTTPVVYLFFDRL 1011
		             ++  PV ++   R 
		Sbjct: 1017 AIFFVPVFFVVIRRC 1031
		
		
	1158#JEONG1266_06080	ACRIFLAVINRP#Acriflavin resistance protein family signature.	916	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score =  916 bits (2369), Expect = 0.0
		 Identities = 298/1036 (28%), Positives = 513/1036 (49%), Gaps = 29/1036 (2%)
		
		Query: 13   SRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAV 72
		            +  FI RP+   +L + +++AG +    LPV+  P +  P + V   YPGA    +   V
		Sbjct: 2    ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61
		
		Query: 73   TAPLERQFGQMSGLKQMSSQS-SGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSD 131
		            T  +E+    +  L  MSS S S G+  ITL FQ     D+A+ +VQ  +  AT LLP +
		Sbjct: 62   TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121
		
		Query: 132  LPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVE--DMVETRVAQKISQISGVGLVTLSGG 189
		            +    + S    +   +M     S     TQ +  D V + V   +S+++GVG V L G 
		Sbjct: 122  VQQQGI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
		
		Query: 190  QRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGP------SRAVTLSANDQ 243
		            Q  A+R+ L+A  +    LT   V   +   N   A G L G           ++ A  +
		Sbjct: 181  QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239
		
		Query: 244  MQSAEEYRQLII-AYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGANI 302
		             ++ EE+ ++ +    +G+ +RL DVA VE G EN  + A  N + A  + ++   GAN 
		Sbjct: 240  FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299
		
		Query: 303  ISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMMAITLVVMIIYLFL 362
		            + TA +I+  L +L    P+ +KV    D T  ++ S+ +    L  AI LV +++YLFL
		Sbjct: 300  LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359
		
		Query: 363  RNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRY 422
		            +N+ AT+IP +AVP+ L+GTFA++    +SIN LT+  + +A G +VDDAIVV+EN+ R 
		Sbjct: 360  QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419
		
		Query: 423  I-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAIL 481
		            + E    P  A  K   +I   ++ +   L AV IP+ F G   G ++R+F+IT+  A+ 
		Sbjct: 420  MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479
		
		Query: 482  ISAVVSLTLTPMMCARML---SQESLRKQNRFSRASEKMFDRIIAAYGRGLAKVLNHPWL 538
		            +S +V+L LTP +CA +L   S E    +  F       FD  +  Y   + K+L     
		Sbjct: 480  LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539
		
		Query: 539  TLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQ 598
		             L +    +   V+L++ +P  F P +D G+    +Q P  ++     +   QV D  L+
		Sbjct: 540  YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599
		
		Query: 599  DPA--VQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDR---VQKVIARLQTAVDKVPG 653
		            +    V+S+ +  G   +  + N+    ++LKP +ER+      + VI R +  + K+  
		Sbjct: 600  NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR- 658
		
		Query: 654  VDLFLQPTQDLTIDTQVSRTQYQFTLQ---ATSLDALSTWVPQLMEKLQQLP-QISDVSS 709
		             D F+ P     I    + T + F L        DAL+    QL+    Q P  +  V  
		Sbjct: 659  -DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717
		
		Query: 710  DWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTE 769
		            +  +      + VD++ A  LG+S++D++  +  A G   ++    +    ++ ++ + +
		Sbjct: 718  NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777
		
		Query: 770  NTPGLAALDTIRLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLG 829
		                   +D + + S++G +VP S+       +    +   +  P   I        S G
		Sbjct: 778  FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837
		
		Query: 830  DAVQAIMDTEKTLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFI 889
		            DA  A+M+   +  LP  I   + G +   + +      L+  + V +++ L  LYES+ 
		Sbjct: 838  DA-MALMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895
		
		Query: 890  HPITILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQ 949
		             P++++  +P   VG LLA  +   + DV  ++G++  IG+  KNAI++++FA     ++
		Sbjct: 896  IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955
		
		Query: 950  GMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQV 1009
		            G    +A   A  +R RPILMT+LA +LG LPL +S G G+  +  +GIG++GG++ + +
		Sbjct: 956  GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015
		
		Query: 1010 LTLFTTPVIYLLFDRL 1025
		            L +F  PV +++  R 
		Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
		
		
	1159#JEONG1266_06085	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	48	4e-08
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 47.9 bits (114), Expect = 4e-08
		 Identities = 48/369 (13%), Positives = 105/369 (28%), Gaps = 87/369 (23%)
		
		Query: 4   SYKSRWVIVIVVVIAAIAAFWFWQGRNDSQSAAPG-----ATKQAQQSPAGGRRG---MR 55
		           S + R V   ++    IA      G+ +  + A G        +  +           ++
		Sbjct: 54  SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113
		
		Query: 56  SG-------PLA---PVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDG--QLMALHF 103
		            G        L     + A     +     L      T    ++    ++   +L     
		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173
		
		Query: 104 QEGQQVKAGDLLAEI------------DPSQFKVALAQAQGQLAKDKATLTNARR----- 146
		              Q V   ++L                  Q ++ L + + +     A +          
		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233
		
		Query: 147 --DLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVA----------------- 187
		              L  +  L     +++  +  Q+    E    ++  ++ +                  
		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
		
		Query: 188 --------------------------SAQLQLDWSRITAPVDGRV-GLKQVDVGNQISSG 220
		                                       + +   S I APV  +V  LK    G  +++ 
		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
		
		Query: 221 DTTGIVVITQTHPIDLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKL-SEGTLLSL 279
		           +T  +V++ +   +++   +   DI  +   Q A   + VEA+  T    L  +   ++L
		Sbjct: 354 ETL-MVIVPEDDTLEVTALVQNKDIGFINVGQNA--IIKVEAFPYTRYGYLVGKVKNINL 410
		
		Query: 280 DNQIDATTG 288
		           D   D   G
		Sbjct: 411 DAIEDQRLG 419
		
		
	1163#JEONG1266_06105	SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein s...	51	4e-09
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein
		           signature.
		          Length = 347
		
		 Score = 50.9 bits (122), Expect = 4e-09
		 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 20/129 (15%)
		
		Query: 132 AMMLH-IRQQAQAQLPEAITQAVIGRPINFQGLGGDEANAQAQGILERAAKRAGFRDVVF 190
		            M+ H I+Q           + ++  P+    +   E  A     +  +A+ AG R+V  
		Sbjct: 89  KMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQV---ERRA-----IRESAQGAGAREVFL 140
		
		Query: 191 QYEPVAAGLDYEATLQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDREASLLGHSGCRI 250
		             EP+AA +     + E    +VVDIGGGTT+ +++ +             ++  S  RI
		Sbjct: 141 IEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN-----------GVVYSSSVRI 189
		
		Query: 251 GGNDLDIAL 259
		           GG+  D A+
		Sbjct: 190 GGDRFDEAI 198
		
		
		
		 Score = 33.2 bits (76), Expect = 0.002
		 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
		
		Query: 332 RLSYRLV---RSAEECKIALSSV--AETRASLPFISDELAT------LISQQGLESALSQ 380
		           R +Y  +    +AE  K  + S    +    +      LA        ++   +  AL +
		Sbjct: 203 RRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQE 262
		
		Query: 381 PLARIQEQVQLALDNAQEKPDV--------IYLTGGSARSPLIKKALAEQLPGIPIAGGD 432
		           PL  I   V +AL+  Q  P++        + LTGG A    + + L E+  GIP+   +
		Sbjct: 263 PLTGIVSAVMVALE--QCPPELASDISERGMVLTGGGALLRNLDRLLMEET-GIPVVVAE 319
		
		Query: 433 D-FGSVTAGLARWAEVV 448
		           D    V  G  +  E++
		Sbjct: 320 DPLTCVARGGGKALEMI 336
		
		
JEONG1266_07355	JEONG1266_07390	N	Y	N	JEONG1266_07280	JEONG1266_07480
	JEONG1266_07355	-1	32	-7.738731	DNA-binding response regulator
	JEONG1266_07360	0	30	-7.083950	two-component sensor histidine kinase
	JEONG1266_07365	-2	24	-5.520649	chaperone protein HchA
	JEONG1266_07370	-2	14	-1.955121	hypothetical protein
	JEONG1266_07380	-2	13	-0.045900	hypothetical protein
	JEONG1266_07385	2	19	1.933871	phosphohydrolase
	JEONG1266_07390	2	18	1.905186	DNA (cytosine-5-)-methyltransferase
	1396#JEONG1266_07360	HTHFIS#FIS bacterial regulatory protein HTH signature.	82	2e-20
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 82.2 bits (203), Expect = 2e-20
		 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
		
		Query: 2   KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61
		            IL+ +D+   +  + Q LS AGY +   S+           D  L++ D+++P  + + 
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 62  ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117
		           +L  ++ A    PV+ ++A+++    ++  + GA DYL KPF  +EL+  +   L +
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		
	1397#JEONG1266_07365	PF06580#Sensor histidine kinase	32	0.005
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 31.8 bits (72), Expect = 0.005
		 Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 37/181 (20%)
		
		Query: 290 ENILFLARADKNNVLVKLDSLS----------------LNKEVENLLDYL--EYLSDEKE 331
		            NI  L   D       L SLS                L  E+  +  YL    +  E  
		Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDR 239
		
		Query: 332 ICFKVECNQQIFADKI---LLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIAS 388
		           + F+ + N  I   ++   L+Q ++ N I + I   P+  +I +    D N  + +++ +
		Sbjct: 240 LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVEN 298
		
		Query: 389 PGAKINEPEKLFRRFWRGDNSRHSVGQGLGLSLVKA-IAELHGGSATYHYLNKHNVFRIT 447
		            G+   +  K                 G GL  V+  +  L+G  A      K       
		Sbjct: 299 TGSLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
		
		Query: 448 L 448
		           +
		Sbjct: 345 V 345
		
		
	1401#JEONG1266_07390	CARBMTKINASE#Bacterial carbamate kinase signature.	35	2e-04
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score = 34.8 bits (80), Expect = 2e-04
		 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
		
		Query: 37  AQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQSSSILAAEETRRLLREEFVQFPA-- 94
		            +KLA + + D+ +ILT     +  +L     + Q    +  EE R+   E    F A  
		Sbjct: 219 GEKLAEEVNADIFMILTDV---NGAALYYGTEKEQWLREVKVEELRKYYEEG--HFKAGS 273
		
		Query: 95  --EKIEAVCHAIAAHSFSAQIAPLTTEAKIVQ 124
		              K+ A    I      A IA L    + ++
		Sbjct: 274 MGPKVLAAIRFIEWGGERAIIAHLEKAVEALE 305
		
		
	1402#JEONG1266_07395	PF05272#Virulence-associated E family protein	29	0.045
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.045
		 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
		
		Query: 320 AKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRG 379
		           A+Y + PVLW Y+ R+ K   + G+      VY            +R  +DG+E    RG
		Sbjct: 166 ARYQVGPVLWGYVVRFIK---SDGDKLTLPYVY------------SRSQRDGSEAWKWRG 210
		
		Query: 380 WD 381
		           WD
		Sbjct: 211 WD 212
		
		
JEONG1266_07440	JEONG1266_07580	N	Y	Y	JEONG1266_07360	JEONG1266_07565
	JEONG1266_07440	0	16	-2.274102	flagellar biosynthetic protein FliR
	JEONG1266_07445	-1	17	0.697658	flagellar export apparatus protein FliQ
	JEONG1266_07450	-2	21	1.944753	flagellar biosynthetic protein FliP
	JEONG1266_07455	-1	17	2.509409	flagellar biosynthetic protein FliO
	JEONG1266_07460	-1	18	2.505671	flagellar motor switch protein FliN
	JEONG1266_07465	-1	19	3.610943	flagellar motor switch protein FliM
	JEONG1266_07470	-1	17	3.875152	flagellar basal body-associated protein FliL
	JEONG1266_07475	1	18	4.444172	flagellar hook-length control protein
	JEONG1266_07480	0	16	4.265171	flagellar biosynthesis chaperone FliJ
	JEONG1266_07485	0	17	4.348513	flagellum-specific ATP synthase FliI
	JEONG1266_07490	-1	16	4.088420	flagellar assembly protein H
	JEONG1266_07495	-1	13	-1.169023	flagellar motor switch protein FliG
	JEONG1266_07500	0	14	-2.451336	flagellar M-ring protein FliF
	JEONG1266_07505	-2	21	-4.279539	flagellar hook-basal body complex protein FliE
	JEONG1266_07510	4	39	-11.851310	integrase
	JEONG1266_07515	4	40	-12.115316	type III effector
	JEONG1266_07520	2	37	-10.370852	acetyltransferase
	JEONG1266_07525	1	32	-7.702309	type III effector
	JEONG1266_07530	0	19	-4.481096	acetyltransferase
	JEONG1266_07535	0	16	-3.563218	hypothetical protein
	JEONG1266_07545	0	14	0.703920	SirA-like protein
	JEONG1266_07550	-1	15	0.357892	hypothetical protein
	JEONG1266_07555	-2	19	0.662625	hypothetical protein
	JEONG1266_07560	-1	15	-0.966649	alpha-amylase
	JEONG1266_07565	0	14	-1.026971	flagellar biosynthesis protein FliT
	JEONG1266_07570	0	14	-1.072144	flagellar export chaperone FliS
	JEONG1266_07575	0	13	-1.275406	flagellar filament capping protein FliD
	JEONG1266_07580	-1	12	-0.654907	flagellin
	1412#JEONG1266_07445	TYPE3IMRPROT#Type III secretion system inner membrane R protein ...	203	3e-67
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein
		           family signature.
		          Length = 261
		
		 Score =  203 bits (518), Expect = 3e-67
		 Identities = 260/261 (99%), Positives = 261/261 (100%)
		
		Query: 1   MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
		           MLQVTSEQWLSWL+LYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA
		Sbjct: 1   MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
		
		Query: 61  NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120
		           NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL
		Sbjct: 61  NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120
		
		Query: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180
		           NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF
		Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180
		
		Query: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240
		           LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC
		Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240
		
		Query: 241 EHLFSEIFNLLADIISELPLI 261
		           EHLFSEIFNLLADIISELPLI
		Sbjct: 241 EHLFSEIFNLLADIISELPLI 261
		
		
	1413#JEONG1266_07450	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	67	1e-18
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 67.1 bits (164), Expect = 1e-18
		 Identities = 22/78 (28%), Positives = 42/78 (53%)
		
		Query: 4  ESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFIAII 63
		          + ++  G +A+ + L L+    +VA + GL++ + Q  TQ+ E TL F  K++ V + + 
		Sbjct: 2  DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
		
		Query: 64 IAGPWMLNLLLDYVRTLF 81
		          +   W   +LL Y R + 
		Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
		
		
	1414#JEONG1266_07455	FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein Fl...	334	e-119
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP
		           signature.
		          Length = 245
		
		 Score =  334 bits (858), Expect = e-119
		 Identities = 245/245 (100%), Positives = 245/245 (100%)
		
		Query: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60
		           MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM
		Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60
		
		Query: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120
		           MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK
		Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120
		
		Query: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180
		           ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK
		Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180
		
		Query: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
		           TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
		Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
		
		Query: 241 QSFYS 245
		           QSFYS
		Sbjct: 241 QSFYS 245
		
		
	1416#JEONG1266_07465	FLGMOTORFLIN#Flagellar motor switch protein FliN signature.	212	1e-74
		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.
		          Length = 137
		
		 Score =  212 bits (542), Expect = 1e-74
		 Identities = 125/137 (91%), Positives = 134/137 (97%)
		
		Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGGGDVSGTLQDIDLIMDI 60
		           MSDMNNP+D+N GA+DDLWA+AL+EQK+T++KSAADAVFQQ GGGDVSG +QDIDLIMDI
		Sbjct: 1   MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60
		
		Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
		           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
		Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
		
		Query: 121 RITDIITPSERMRRLSR 137
		           RITDIITPSERMRRLSR
		Sbjct: 121 RITDIITPSERMRRLSR 137
		
		
	1417#JEONG1266_07470	FLGMOTORFLIM#Flagellar motor switch protein FliM signature.	381	e-135
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.
		          Length = 344
		
		 Score =  381 bits (979), Expect = e-135
		 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 10/324 (3%)
		
		Query: 5   ILSQAEIDALLNGDS--EVKDEPTASVSGESDIRPYDPNTQRRVVRERLQALEIINERFA 62
		           +LSQ EID LL   S  +   E    +S    I  YD     +  +E+++ L +++E FA
		Sbjct: 4   VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63
		
		Query: 63  RHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122
		           R     L   LR    + V ++    Y EF R++P P+ L +I + PL+G  ++   PS+
		Sbjct: 64  RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123
		
		Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182
		            F  +D LFGG G+   KV+ R+ T  E  V+  ++   L    ++W  +  L     + 
		Sbjct: 124 TFSIIDRLFGGTGQ-AAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181
		
		Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS--R 240
		           E   +F  I   P+++VV      ++G   G  N C+P+  IEP+   L +    +S  R
		Sbjct: 182 ETNPQFAQI-VPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240
		
		Query: 241 NEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILKLKPGDVLPIEKP---DRIIAHVD 297
		           +    +   L  ++    +++VA    + L +  IL L+ GD++ +      D  +  + 
		Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300
		
		Query: 298 GVPVLTSQYGTLNGQYALRIEHLI 321
		                  Q G +  + A +I   I
		Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
		
		
	1419#JEONG1266_07480	FLGHOOKFLIK#Flagellar hook-length control protein signature.	470	e-168
		>FLGHOOKFLIK#Flagellar hook-length control protein signature.
		          Length = 375
		
		 Score =  470 bits (1209), Expect = e-168
		 Identities = 369/375 (98%), Positives = 369/375 (98%)
		
		Query: 1   MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60
		           MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK
		Sbjct: 1   MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTDKAAPQLLVATDKPTTK 60
		
		Query: 61  GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA 120
		           GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA
		Sbjct: 61  GEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKA 120
		
		Query: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKPTLFTKLTSAQLTTAQPDDAP 180
		           DDLNEDVTASLSALFAMLPGFDNTPKVTD PSTVLP EKPTLFTKLTS QLTTAQPDDAP
		Sbjct: 121 DDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAP 180
		
		Query: 181 GTPAQPLTPQVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240
		           GTPAQPLTP VAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW
		Sbjct: 181 GTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEW 240
		
		Query: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSSHQHVRAALEAA 300
		           QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVS HQHVRAALEAA
		Sbjct: 241 QQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAA 300
		
		Query: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTVNHEPLAGEDDDTLPVPVS 360
		           LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRT NHEPLAGEDDDTLPVPVS
		Sbjct: 301 LPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVS 360
		
		Query: 361 LQGRVTGNSGVDIFA 375
		           LQGRVTGNSGVDIFA
		Sbjct: 361 LQGRVTGNSGVDIFA 375
		
		
	1420#JEONG1266_07485	FLGFLIJ#Flagellar FliJ protein signature.	202	2e-70
		>FLGFLIJ#Flagellar FliJ protein signature.
		          Length = 147
		
		 Score =  202 bits (515), Expect = 2e-70
		 Identities = 146/147 (99%), Positives = 147/147 (100%)
		
		Query: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60
		           MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG
		Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60
		
		Query: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120
		           +TSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST
		Sbjct: 61  ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120
		
		Query: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147
		           AALLAENRLDQKKMDEFAQRAAMRKPE
		Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147
		
		
	1422#JEONG1266_07495	FLGFLIH#Flagellar assembly protein FliH signature.	374	e-135
		>FLGFLIH#Flagellar assembly protein FliH signature.
		          Length = 228
		
		 Score =  374 bits (961), Expect = e-135
		 Identities = 226/228 (99%), Positives = 227/228 (99%)
		
		Query: 1   MSDNLPWKTWTPDDLAPPQAEFVPMVESEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60
		           MSDNLPWKTWTPDDLAPPQAEFVP+VE EETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI
		Sbjct: 1   MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60
		
		Query: 61  AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120
		           AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL
		Sbjct: 61  AEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRL 120
		
		Query: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
		           MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT
		Sbjct: 121 MQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
		
		Query: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228
		           LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV
		Sbjct: 181 LSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228
		
		
	1423#JEONG1266_07500	FLGMOTORFLIG#Flagellar motor switch protein FliG signature.	341	e-119
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
		          Length = 344
		
		 Score =  341 bits (876), Expect = e-119
		 Identities = 117/329 (35%), Positives = 197/329 (59%), Gaps = 2/329 (0%)
		
		Query: 1   MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANVTQISNKQLTDVLAEFE 60
		           +S LTG  K+ ILL++IG + +++VFK+LSQ E+++L+  +A +  I+++   +VL EF+
		Sbjct: 12  VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71
		
		Query: 61  QEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRDTASGIETLNFMEPQSAAD 120
		           +       +     DY R +L K+LG ++A  ++ + L +   +   E +   +P +  +
		Sbjct: 72  ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINN-LGSALQSRPFEFVRRADPANILN 130
		
		Query: 121 LIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN 180
		            I+ EHPQ IA IL +L   +A+ IL+     ++ +V  RIA      P  + E+  VL 
		Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190
		
		Query: 181 GLLDGQ-NLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL 239
		             L    +   +  GGV    EIIN+   + E+ +I ++ E D ELA++I  +MF+FE++
		Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250
		
		Query: 240 VDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLS 299
		           V +DDRSIQR+L+E+D + L  ALK  + P++EK  +NMS+RAA +L++D+   GP R  
		Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310
		
		Query: 300 QVENEQKAILLIVRRLAETGEMVIGSGED 328
		            VE  Q+ I+ ++R+L E GE+VI  G +
		Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGE 339
		
		
	1424#JEONG1266_07505	FLGMRINGFLIF#Flagellar M-ring protein signature.	752	0.0
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score =  752 bits (1943), Expect = 0.0
		 Identities = 478/555 (86%), Positives = 515/555 (92%), Gaps = 5/555 (0%)
		
		Query: 3   ATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGA 62
		           +TA Q K LEWLNRLRANP+IPLIVAGSAAVA++VA++LWAK PDYRTLFSNLSDQDGGA
		Sbjct: 5   STATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGA 64
		
		Query: 63  IVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 122
		           IV+QLTQMNIPYRF+  SGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ
		Sbjct: 65  IVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQ 124
		
		Query: 123 FSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRA 182
		           FSEQVNYQRALEGEL+RTIET+GPVK ARVHLAMPKPSLFVREQKSPSASVTV L PGRA
		Sbjct: 125 FSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRA 184
		
		Query: 183 LDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDVEGRI 242
		           LDEGQISA+VHLVSSAVAGLPPGNVTLVDQ GHLLTQSNTS RDLNDAQLK+A+DVE RI
		Sbjct: 185 LDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRI 244
		
		Query: 243 QRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNESEQSG 302
		           QRRIEAILSPIVGNGN+HAQVTAQLDFA+KEQTEE Y PNGD S+A LRSRQLN SEQ G
		Sbjct: 245 QRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVG 304
		
		Query: 303 SGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQ--QASTTSNS---GPRSTQRNETSN 357
		           +GYPGGVPGALSNQPAP N API+TPP NQ N Q   Q ST++NS   GPRSTQRNETSN
		Sbjct: 305 AGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSN 364
		
		Query: 358 YEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGKPLPLSNEQMKQIEDLTREAMGFSEK 417
		           YEVDRTIRHTKMNVGD++RLSVAVVVNYKTL DGKPLPL+ +QMKQIEDLTREAMGFS+K
		Sbjct: 365 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK 424
		
		Query: 418 RGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLT 477
		           RGD+LNVVNSPF++ D +GGELPFWQQQ+FIDQLLAAGRWLLVL+VAW+LWRKAVRPQLT
		Sbjct: 425 RGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLT 484
		
		Query: 478 RRAEAMKAVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 537
		           RR E  KA Q+QAQ R+E E+AVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR
		Sbjct: 485 RRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPR 544
		
		Query: 538 VVALVIRQWINNDHE 552
		           VVALVIRQW++NDHE
		Sbjct: 545 VVALVIRQWMSNDHE 559
		
		
	1425#JEONG1266_07510	FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signa...	117	5e-38
		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE
		           signature.
		          Length = 103
		
		 Score =  117 bits (294), Expect = 5e-38
		 Identities = 103/103 (100%), Positives = 103/103 (100%)
		
		Query: 2   SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 61
		           SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL
		Sbjct: 1   SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 60
		
		Query: 62  GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 104
		           GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV
		Sbjct: 61  GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
		
		
	1428#JEONG1266_07525	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	1e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 1e-04
		 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
		
		Query: 20  APNYLRRGVASLILRHILQVAHDRCLHRLSLETGTQAGFTACHQLYLKHGFVDC 73
		           A +Y ++GV + +L   ++ A +     L LET      +ACH  Y KH F+  
		Sbjct: 98  AKDYRKKGVGTALLHKAIEWAKENHFCGLMLET-QDINISACH-FYAKHHFIIG 149
		
		
	1430#JEONG1266_07540	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	4e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 4e-04
		 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
		
		Query: 80  APNYLRRGVASLILRHILQVAHDRCLHRLSLETGTQAGFTACHQLYLKHGFVDC 133
		           A +Y ++GV + +L   ++ A +     L LET      +ACH  Y KH F+  
		Sbjct: 98  AKDYRKKGVGTALLHKAIEWAKENHFCGLMLET-QDINISACH-FYAKHHFIIG 149
		
		
	1432#JEONG1266_07550	PF01206#SirA family protein	93	6e-29
		>PF01206#SirA family protein
		          Length = 76
		
		 Score = 92.5 bits (230), Expect = 6e-29
		 Identities = 16/71 (22%), Positives = 37/71 (52%)
		
		Query: 7  DYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQ 66
		          D  LD  G  CP P +   + +  +  GE+L V++  P S+ +    ++  G+ +L+ ++
		Sbjct: 5  DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64
		
		Query: 67 DGPTIRYLIQK 77
		          +  T  + +++
		Sbjct: 65 EDGTYHFRLKR 75
		
		
	1433#JEONG1266_07555	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	30	0.018
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 30.2 bits (68), Expect = 0.018
		 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
		
		Query: 164 RFTLLPIFRIPVKMQKVAAASPLTQKPDQARRRF--RLGMLVFFGMLGWALLTAMNQ 218
		           R  L    R   + + + A   L + P   R R      M         ++L  +  
		Sbjct: 26  RKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEI 82
		
		
	1438#JEONG1266_07580	TYPE3OMBPROT#Type III secretion system outer membrane B protein ...	33	0.003
		>TYPE3OMBPROT#Type III secretion system outer membrane B protein
		           family signature.
		          Length = 538
		
		 Score = 32.7 bits (74), Expect = 0.003
		 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
		
		Query: 211 NGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQT 270
		           N  E +VAA+N    + + A+ +    +S AL   T++L  V+T    LT T  T   ++
		Sbjct: 236 NSSERAVAARNKAEELVSAALYSRPELLSQALSGKTVDLKIVSTS--LLTPTSLTGGEES 293
		
		Query: 271 AIKDWVNAYNSL 282
		            +KD VNA   L
		Sbjct: 294 MLKDQVNALKGL 305
		
		
	1439#JEONG1266_07585	FLAGELLIN#Flagellin signature.	228	6e-70
		>FLAGELLIN#Flagellin signature.
		          Length = 507
		
		 Score =  228 bits (582), Expect = 6e-70
		 Identities = 253/583 (43%), Positives = 306/583 (52%), Gaps = 76/583 (13%)
		
		Query: 2   AQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 61
		           AQVINTNSLSL+TQNN+NK+QS+LSS+IERLSSGLRINSAKDDAAGQAIANRFTSNIKGL
		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60
		
		Query: 62  TQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQATTGTNSDSDLDSIQDEIKSRLD 121
		           TQA+RNANDGIS+AQTTEGAL+EINNNLQR+REL+VQAT GTNSDSDL SIQDEI+ RL+
		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120
		
		Query: 122 EIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGETITIDLKKIDSDTLGLNGFNVNGKGTI 181
		           EIDRVS QTQFNGV VL++D  MKIQVGANDGETITIDL+KID  +LGL+GFNVNG    
		Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNG---- 176
		
		Query: 182 TNKAATVSDLTSAGAKLNTTTGLYDLKTENTLLTTDAAFDKLGNGDKVTVGGVDYTYNAK 241
		                  + +    +     TG             D     +               NA 
		Sbjct: 177 ----PKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAA 232
		
		Query: 242 SGDFTTTKSTAGTGVDAAAQAADSASKRDALAATLHADVGKSVNGSYTTKDGTVSFETDS 301
		           +G  TT  +   T VD       +A   +A A                 K G      D 
		Sbjct: 233 NGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIA------------GAIKGGKEGDTFDY 280
		
		Query: 302 AGNITIGGSQAYVDDAGNLTTNNAGSAAKADMKALLKAASEGSDGASLTFNGTEYTIAKA 361
		            G      ++   D  G ++T                                       
		Sbjct: 281 KGVTFTIDTKTGNDGNGKVSTT-------------------------------------- 302
		
		Query: 362 TPATTTPVAPLIPGGITYQATVSKDVVLSETKAAAATSSITFNSGVLSKTIGFTAGESSD 421
		                      I G              +   AA   SS    + V++    F     ++
		Sbjct: 303 -----------INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351
		
		Query: 422 AAKSYVDDKGGITNVADYTVSYSVNKDNGSVTVAGYASATDTNKDYAPAIGTAVNVNSAG 481
		           +AK    +                            A+                    + 
		Sbjct: 352 SAKLSDLEANNAVKGE-------SKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVST 404
		
		Query: 482 KITTETTSAGSATTNPLAALDDAISSIDKFRSSLGAIQNRLDSAVTNLNNTTTNLSEAQS 541
		            I  +  +A  +T NPLA++D A+S +D  RSSLGAIQNR DSA+TNL NT TNL+ A+S
		Sbjct: 405 LINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARS 464
		
		Query: 542 RIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 584
		           RI+DADYATEVSNMSKAQI+QQAG SVLA+ANQVPQ VLSLL+
		Sbjct: 465 RIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
		
		
JEONG1266_07900	JEONG1266_07940	N	Y	N	JEONG1266_07820	JEONG1266_08020
	JEONG1266_07900	-1	13	1.207738	flagellar motor stator protein MotA
	JEONG1266_07905	-1	13	1.530259	flagellar motor protein MotB
	JEONG1266_07910	-1	11	1.657828	chemotaxis protein CheA
	JEONG1266_07915	0	13	1.483452	chemotaxis protein CheW
	JEONG1266_07920	1	13	1.648670	methyl-accepting chemotaxis protein II
	JEONG1266_07925	0	18	2.206400	methyl-accepting protein IV
	JEONG1266_07930	0	15	2.493212	chemotaxis protein-glutamate
	JEONG1266_07935	0	15	2.454635	chemotaxis response regulator protein-glutamate
	JEONG1266_07940	-1	16	0.857319	two-component system response regulator
	1498#JEONG1266_07900	PF05844#YopD protein	33	0.001
		>PF05844#YopD protein
		          Length = 295
		
		 Score = 33.1 bits (75), Expect = 0.001
		 Identities = 12/28 (42%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
		
		Query: 76  MDLLALLYRLMAKSRQMGMFSLERDIEN 103
		           ++LL +L+R+  K+R++G+  L+RD EN
		Sbjct: 74  VELLLILFRIAQKARELGV--LQRDNEN 99
		
		
	1499#JEONG1266_07905	PF05272#Virulence-associated E family protein	30	0.010
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.4 bits (68), Expect = 0.010
		 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
		
		Query: 46  LISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPNIEE 105
		           L  +SSP      A     P     + G   + ++   PGGGDD     GE      +++
		Sbjct: 384 LADVSSPTAAAGGAGGGEPPKKRDPSAG---AGTDPGGPGGGDD-----GEDPFGEWLDD 435
		
		Query: 106 LKKRM---EQSRLRKLRGDLDQLIESDPKLRAL 135
		              R+    +  L+  R  L + + S P L   
		Sbjct: 436 EVARLRLRGRWLLKPRRAALIEALRSAPALAGC 468
		
		
	1500#JEONG1266_07910	PF06580#Sensor histidine kinase	43	4e-06
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 42.5 bits (100), Expect = 4e-06
		 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 52/151 (34%)
		
		Query: 359 ELDKSLIERIIDPLT--HLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEV 416
		           +++ ++++  + P+    LV N + HGI              G ++L      G + +EV
		Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296
		
		Query: 417 TDDGAGLNRERILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVV 476
		            + G+   +                                            G G+  V
		Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318
		
		Query: 477 KRNIQEMGG---HVEIQSKQGTGTTIRILLP 504
		           +  +Q + G    +++  KQG      +L+P
		Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
		
		
	1505#JEONG1266_07935	HTHFIS#FIS bacterial regulatory protein HTH signature.	65	8e-14
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 65.2 bits (159), Expect = 8e-14
		 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 23/188 (12%)
		
		Query: 1   MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMP 60
		           M+   +L  DD A +R ++ + ++       V    +       I   + D++  DV MP
		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58
		
		Query: 61  RMDGLDFLEKLMRLRPMPVVMVSSLTGKGS-EVTLRALELGAIDFVTKPQLGIREGMLAY 119
		             +  D L ++ + RP   V+V  ++ + +    ++A E GA D++ KP   + E +   
		Sbjct: 59  DENAFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKP-FDLTELIGII 115
		
		Query: 120 SEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLP 179
		              +AE  R  +K    +   +                   +G S    E  R + + + 
		Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMP-----------------LVGRSAAMQEIYRVLARLMQ 158
		
		Query: 180 LSSPALLI 187
		                ++ 
		Sbjct: 159 TDLTLMIT 166
		
		
	1506#JEONG1266_07940	HTHFIS#FIS bacterial regulatory protein HTH signature.	90	4e-24
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 89.5 bits (222), Expect = 4e-24
		 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
		
		Query: 7   KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 66
		             LV DD + +R ++   L   G++ V    +       + AG    V++D  MP+ +  
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 67  ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
		           +LL  I+       LPVL+++A+      I A++ GA  Y+ KPF
		Sbjct: 64  DLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
		
		
JEONG1266_11335	JEONG1266_11370	N	Y	N	JEONG1266_11250	JEONG1266_11455
	JEONG1266_11335	-1	14	-0.131820	peptide ABC transporter ATP-binding protein
	JEONG1266_11340	-1	14	-0.218857	peptide ABC transporter ATP-binding protein
	JEONG1266_11345	-1	12	-0.043248	Bcr/CflA family drug resistance efflux
	JEONG1266_11350	-1	12	0.248362	multidrug transporter
	JEONG1266_11355	-2	15	0.092634	aminoglycoside/multidrug transporter permease
	JEONG1266_11360	-1	16	-0.725973	efflux transporter periplasmic adaptor subunit
	JEONG1266_11365	-1	17	-0.884753	TetR family transcriptional regulator
	JEONG1266_11370	-1	17	-0.820658	enoyl-[acyl-carrier-protein] reductase
	2158#JEONG1266_11335	HTHFIS#FIS bacterial regulatory protein HTH signature.	31	0.007
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 31.0 bits (70), Expect = 0.007
		 Identities = 9/16 (56%), Positives = 14/16 (87%)
		
		Query: 38  LVGESGSGKSLIAKAI 53
		           + GESG+GK L+A+A+
		Sbjct: 165 ITGESGTGKELVARAL 180
		
		
	2160#JEONG1266_11345	TCRTETA#Tetracycline resistance protein signature.	67	2e-14
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 67.2 bits (164), Expect = 2e-14
		 Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 18/312 (5%)
		
		Query: 5   SLSWALILGLLAGIGPMCTDLYLPALPEMSEQLAATTTITQLTLTASLIGLGVGQLLFGP 64
		            L   L    L  +G     L +P LP +   L  +  +T       L    + Q    P
		Sbjct: 6   PLIVILSTVALDAVG---IGLIMPVLPGLLRDLVHSNDVTA-HYGILLALYALMQFACAP 61
		
		Query: 65  ----LSDKIGRKRPLILSLLLFIVSSILCATTNNIYWLVVWRFIQGIAGAGGSVLSRSIA 120
		               LSD+ GR+  L++SL    V   + AT   ++ L + R + GI GA G+V    IA
		Sbjct: 62  VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121
		
		Query: 121 RDKYQGVTLTQFFALLMTVNGLAPVLSPVLGGYIVSTFDWRTLFWVMAEISTVLLLGCVL 180
		            D   G    + F  +    G   V  PVLGG +   F     F+  A ++ +  L    
		Sbjct: 122 -DITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCF 179
		
		Query: 181 FINETLPENKRGSSL----LLTGRSVVQNRRFMRFCLIQSFMLAGLFAYIGSSSFVL--Q 234
		            + E+    +R         L      +    +   +   F +  L   + ++ +V+  +
		Sbjct: 180 LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF-IMQLVGQVPAALWVIFGE 238
		
		Query: 235 KEFGFSPMQFSLVFGLNGI-GLIIASWIFSRLARRINAMTLLRGGLIAAILCALLTVLCA 293
		             F +      +     GI   +  + I   +A R+     L  G+IA     +L     
		Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298
		
		Query: 294 WTQLPIPALVAL 305
		              +  P +V L
		Sbjct: 299 RGWMAFPIMVLL 310
		
		
	2161#JEONG1266_11350	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	31	0.008
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 31.3 bits (71), Expect = 0.008
		 Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 11/166 (6%)
		
		Query: 70  DVQKAIADIDSARALYGQTNASLFPTVNAALSSTRSRSLANGTETTAEADGTVSSFTLDL 129
		               A AD    ++   Q               +RS  L    E     +    + + + 
		Sbjct: 128 TALGAEADTLKTQSSLLQARL----EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183
		
		Query: 130 FGRNQSLSRAARETWLASEFTAQNTRLTLIAEISTAWLTLAADNSNLALAKETMTSAENS 189
		             R  SL +    TW   ++  +       AE  T    +    +   + K         
		Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS-------R 236
		
		Query: 190 LKIIQRQQQVGTAAATDVSEAMSVYQQARASVASYQTQVMQDKNAL 235
		           L            A   V E  + Y +A   +  Y++Q+ Q ++ +
		Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282
		
		
	2162#JEONG1266_11355	ACRIFLAVINRP#Acriflavin resistance protein family signature.	1112	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score = 1112 bits (2878), Expect = 0.0
		 Identities = 552/983 (56%), Positives = 715/983 (72%), Gaps = 6/983 (0%)
		
		Query: 3   SRFFVRRPVFAWVIAILIMLAGILAIRTLPVAQYPDVAPPTIKISATYTGASAETLENSV 62
		           + FF+RRP+FAWV+AI++M+AG LAI  LPVAQYP +APP + +SA Y GA A+T++++V
		Sbjct: 2   ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61
		
		Query: 63  TQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAESRLPSE 122
		           TQVIEQ + G+DNL+Y SSTS S GSV+I +TF+ GTDPD AQVQVQNK+Q A   LP E
		Sbjct: 62  TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121
		
		Query: 123 VQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGVGSLQVFGAE 182
		           VQQ G++VEKS S++L++A         +  DI+D++ SNV+D L+R+ GVG +Q+FGA+
		Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ 181
		
		Query: 183 YAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLTATVRAQSRLQ 242
		           YAMRIWLD   L  Y L P DV + ++ QN Q+ AG++G  P+   QQL A++ AQ+R +
		Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241
		
		Query: 243 TVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALN 302
		             ++F  + ++  SD +VVR+KDVARVE+G E+Y  I ++NG P+AG+ + L+ GANAL+
		Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301
		
		Query: 303 TATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQN 362
		           TA  +K K+AE Q   PQG  + YP D+T F+++S+ +V++TLFEAI+LV  VMYLFLQN
		Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361
		
		Query: 363 LRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVERIMR 422
		           +RATLIP +AVPVVLLGTF +LA FGYSINTLT+F MVLAIGLLVDDAIVVVENVER+M 
		Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421
		
		Query: 423 DKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSITIISAMLLS 482
		           +  LP +EATEKSM +I GALV IA+VLSAVF+PMAFFGGSTG IYRQFSITI+SAM LS
		Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481
		
		Query: 483 VVVALTLTPALCGSVL----QHVPPHKKGFFGAFDRFYRRTEDKYQRGVIYVLRRAARTM 538
		           V+VAL LTPALC ++L         +K GFFG F+  +  + + Y   V  +L    R +
		Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541
		
		Query: 539 GLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGATAARTAEVNRQIVDWFLINE 598
		            +Y ++  GM ++  +LP SFLP EDQG  +    LPAGAT  RT +V  Q+ D++L NE
		Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601
		
		Query: 599 KANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENTAQAIALRATKELGTIRDAT 658
		           KAN + +FTV+GFSFSG  QN GMAFVSLK W +R G EN+A+A+  RA  ELG IRD  
		Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661
		
		Query: 659 VFAMTPPAVDGLGQSNGFTFELLANGGTDRETLLQMRNQLIEKANQSP-ELHSVRANDLP 717
		           V     PA+  LG + GF FEL+   G   + L Q RNQL+  A Q P  L SVR N L 
		Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721
		
		Query: 718 QMPQLQVDIDSNKAVSLGLSLNDVTDTLSSAWGGTYVNDFIDRGRVKKVYIQGDSEFRSA 777
		              Q ++++D  KA +LG+SL+D+  T+S+A GGTYVNDFIDRGRVKK+Y+Q D++FR  
		Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781
		
		Query: 778 PSDLGKWFVRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMT 837
		           P D+ K +VR ++  M PFSAF T+ W+YG  RL RYNG  + EIQGE A G SSGDAM 
		Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841
		
		Query: 838 KMEELANSLPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLAALYESWSVPFSVI 897
		            ME LA+ LPAG  + W+G+S QE+L+  QA +L A+S +VVFLCLAALYESWS+P SV+
		Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901
		
		Query: 898 LVIPLGLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVEFA-EAAVAEGYSLSR 956
		           LV+PLG++G  LAA + +  NDVYF V LLTTIGLS+KNAILIVEFA +    EG  +  
		Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961
		
		Query: 957 AALRAAQTRLRPIIMTSLAFIAG 979
		           A L A + RLRPI+MTSLAFI G
		Sbjct: 962 ATLMAVRMRLRPILMTSLAFILG 984
		
		
		
		 Score = 93.0 bits (231), Expect = 3e-21
		 Identities = 76/502 (15%), Positives = 164/502 (32%), Gaps = 24/502 (4%)
		
		Query: 6    FVRRPVFAWVIAILIMLAGILAIRTLPVAQYPDVAPPTIKISA-TYTGASAETLENSVTQ 64
		             +       +I  LI+   ++    LP +  P+              GA+ E  +  + Q
		Sbjct: 533  ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592
		
		Query: 65   VIEQQLTGLDNLLY-------FSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAES 117
		            V +  L      +        FS +  +  +    V+ +   + +  +   +  I +A+ 
		Sbjct: 593  VTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652
		
		Query: 118  RLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGVGS-- 175
		             L        +         L  A  +D      +    D L       L       +  
		Sbjct: 653  ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712
		
		Query: 176  ----LQVFGAEYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQL 231
		                          ++ +D  K  +  +  SD+   I              +     ++L
		Sbjct: 713  VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF--IDRGRVKKL 770
		
		Query: 232  TATVRAQSRLQTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVA 291
		                 A+ R    +    + V+S ++  +V                 + + NG PS  + 
		Sbjct: 771  YVQADAKFR-MLPEDVDKLYVRS-ANGEMVPFSAFTTSHWV-YGSPRLERYNGLPSMEIQ 827
		
		Query: 292  VMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVL 351
		               +PG +    A  + + +A     +P G    +   S +    S       +  + V+
		Sbjct: 828  GEAAPGTS-SGDAMALMENLAS---KLPAGIGYDWTGMSYQERL-SGNQAPALVAISFVV 882
		
		Query: 352  VVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAI 411
		            V   +    ++    +   L VP+ ++G      LF    +   +  ++  IGL   +AI
		Sbjct: 883  VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942
		
		Query: 412  VVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQF 471
		            ++VE  + +M  +G    EAT  ++      ++  +L      LP+A   G+        
		Sbjct: 943  LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002
		
		Query: 472  SITIISAMLLSVVVALTLTPAL 493
		             I ++  M+ + ++A+   P  
		Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVF 1024
		
		
	2163#JEONG1266_11360	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	48	3e-08
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 47.9 bits (114), Expect = 3e-08
		 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
		
		Query: 41  PVSVVSELTGR-TSAALSAEVRPQVGGIIQKRLFKEGDLVKAGQPLYQIDAASYQAAWNE 99
		            V +V+   G+ T +  S E++P    I+++ + KEG+ V+ G  L ++ A   +A   +
		Sbjct: 79  QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138
		
		Query: 100 ARAALQQAQALVKADCQKAQRYARLVKENGVSQQDADDAQSTCAQDKASV--------AA 151
		            +++L QA+       Q   R   L K   +   D    Q+   ++   +        + 
		Sbjct: 139 TQSSLLQARLEQ-TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197
		
		Query: 152 KKAALETARINLD 164
		            +       +NLD
		Sbjct: 198 WQNQKYQKELNLD 210
		
		
		
		 Score = 32.1 bits (73), Expect = 0.004
		 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
		
		Query: 83  QPLYQIDAASYQAAWN--EARAALQQAQALVKADCQKAQRYARLVKEN--GVSQQDADDA 138
		             L    A +  A                + K+  ++ +      KE    V+Q   ++ 
		Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300
		
		Query: 139 QSTCAQDKASVAAKKAALETARINLDWTTVTAPISGRI-GISSVTPGALVTASQ 191
		                Q   ++      L         + + AP+S ++  +   T G +VT ++
		Sbjct: 301 LDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354
		
		
	2164#JEONG1266_11365	HTHTETR#TetR bacterial regulatory protein HTH signature.	55	8e-12
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 55.4 bits (133), Expect = 8e-12
		 Identities = 17/65 (26%), Positives = 33/65 (50%)
		
		Query: 1  MTSKLEIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYRYFANKDAIIE 60
		          M  K +   ++ +  I++ A R F + G  + S+ +IA  A ++ G IY +F +K  +  
		Sbjct: 1  MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
		
		Query: 61 EMVRR 65
		          E+   
		Sbjct: 61 EIWEL 65
		
		
	2165#JEONG1266_11370	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	50	1e-09
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 50.4 bits (120), Expect = 1e-09
		 Identities = 51/260 (19%), Positives = 98/260 (37%), Gaps = 22/260 (8%)
		
		Query: 4   LSGKRILVTGVASKLSIAYGIAQAMHREGAEL-AFTYQNDKLKGRVEEFAAQLGSDIVLQ 62
		           + GK   +TG A    I   +A+ +  +GA + A  Y  +KL+  V    A+        
		Sbjct: 6   IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63
		
		Query: 63  CDVAEDASIDTMFAELGKVWPKFDGFVHSIGF---APGDQLDGDYVNAVTREGFKIAHDI 119
		            DV + A+ID + A + +     D  V+  G         L  +   A     F +    
		Sbjct: 64  ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT----FSVN--- 116
		
		Query: 120 SSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMG 178
		           S+  F A     + M++    +++T+    A     +      +KA+     + +   + 
		Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176
		
		Query: 179 PEGVRVNAISAGPIRTLAASGI--------KDFRKMLAHCEAVTPIRRTVTIEDVGNSAA 230
		              +R N +S G   T     +        +  +  L   +   P+++     D+ ++  
		Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236
		
		Query: 231 FLCSDLSAGISGEVVHVDGG 250
		           FL S  +  I+   + VDGG
		Sbjct: 237 FLVSGQAGHITMHNLCVDGG 256
		
		
JEONG1266_12080	JEONG1266_12105	N	Y	N	JEONG1266_11980	JEONG1266_12210
	JEONG1266_12080	-2	20	2.105140	nitrate/nitrite transporter
	JEONG1266_12085	-2	14	1.650970	hypothetical protein
	JEONG1266_12090	-2	13	0.473612	two-component system sensor histidine kinase
	JEONG1266_12095	-2	15	0.491234	DNA-binding response regulator
	JEONG1266_12105	-3	14	-0.462206	invasin
	2298#JEONG1266_12090	ACRIFLAVINRP#Acriflavin resistance protein family signature.	31	0.011
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score = 31.0 bits (70), Expect = 0.011
		 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 22/166 (13%)
		
		Query: 258 IMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSA---GGALSDR 314
		           I+S + L+   + I   A  A L K    +    +  FFG F      S      ++   
		Sbjct: 474 IVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533
		
		Query: 315 LGGTRVTLVNFILMAIFSGLLFLTLPTD----GQGGSFMAFFAVFLALFLTAGLGSGSTF 370
		           LG T   L+ + L+     +LFL LP+        G F+              L +G+T 
		Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM----------IQLPAGATQ 583
		
		Query: 371 QMISVIFRKLTMDRVKAEGGSDER-----AMREAATDTAAALGFIS 411
		           +    +  ++T   +K E  + E          +     A + F+S
		Sbjct: 584 ERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVS 629
		
		
	2300#JEONG1266_12100	PF06580#Sensor histidine kinase	53	1e-09
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 53.3 bits (128), Expect = 1e-09
		 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
		
		Query: 424 PESSRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCEEYSAKFGFPVKLD 483
		           P  +RE+L+ +   +  S         +   +LT       +++  +  S +F   ++ +
		Sbjct: 190 PTKAREMLTSLSELMRYSLRYSNARQVSLADELT------VVDSYLQLASIQFEDRLQFE 243
		
		Query: 484 YQLPPRL----VPSHQAIHLLQIAREALSNALKH-----SQASEVVVTVAQNDNQVKLTV 534
		            Q+ P +    VP      L+Q   E   N +KH      Q  ++++   +++  V L V
		Sbjct: 244 NQINPAIMDVQVPPM----LVQTLVE---NGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296
		
		Query: 535 QDNGCGVPENAIRSNHYGMIIMRDRAQSLRG-DCRVRRRESGGTEVVVTFIP 585
		           ++ G    +N   S   G+  +R+R Q L G + +++  E  G    +  IP
		Sbjct: 297 ENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
		
		
	2301#JEONG1266_12105	HTHFIS#FIS bacterial regulatory protein HTH signature.	74	2e-17
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 73.7 bits (181), Expect = 2e-17
		 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
		
		Query: 7   ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN 66
		           ATIL+ DD   +RT + Q +S A     +   SN         + D DL++ D+ MP  N
		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61
		
		Query: 67  GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA 123
		             + L ++++      ++V S  N     + A ++GA  YL K  +  +L+  + +A
		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
		
		
	2302#JEONG1266_12110	INTIMIN#Intimin signature.	258	3e-79
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score =  258 bits (660), Expect = 3e-79
		 Identities = 120/378 (31%), Positives = 196/378 (51%), Gaps = 21/378 (5%)
		
		Query: 79  GEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDN 138
		           G+ AK  ALG   +    Q +  +++WL  +G A V+++  N   F GS   + +P  D+
		Sbjct: 184 GDYAKDTALGIAGN----QASSQLQAWLQHYGTAEVNLQSGNN--FDGSSLDFLLPFYDS 237
		
		Query: 139 DRYLTWSQLGLTQQDDGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWG 198
		           ++ L + Q+G    D    +N+G GQR+     ++GYN F D     +  R G G E W 
		Sbjct: 238 EKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWR 297
		
		Query: 199 EYLRLSANFYQPFAAWHE--QTATQEQRMARGYDLTARMRMPFYQHLNTSVSVEQYFGDR 256
		           +Y + S N Y   + WHE       ++R A G+D+     +P Y  L   +  EQY+GD 
		Sbjct: 298 DYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDN 357
		
		Query: 257 VDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKK 316
		           V LFNS     NP A ++G+NYTP+PLVT+   ++ G   EN     +   Y+F  P  +
		Sbjct: 358 VALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQ 417
		
		Query: 317 QLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQI 376
		           Q+    V E ++L GSRYD  QRNN   LEY+++  L++ +     +     T  ++L +
		Sbjct: 418 QIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNI-PHDINGTERSTQKIQLIV 476
		
		Query: 377 RSRYGIRQLIWQGDTQILS-----LTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVV 431
		           +S+YG+ +++W  D+ + S        G+Q  SA+ +  I+P +   +G SN ++++   
		Sbjct: 477 KSKYGLDRIVWD-DSALRSQGGQIQHSGSQ--SAQDYQAILPAYV--QGGSNVYKVTARA 531
		
		Query: 432 EDNQGQRVSSNEITLTLV 449
		            D  G   SSN + LT+ 
		Sbjct: 532 YDRNGN--SSNNVLLTIT 547
		
		
JEONG1266_13295	JEONG1266_13345	N	Y	N	JEONG1266_13220	JEONG1266_13425
	JEONG1266_13295	1	14	1.854661	ribonuclease E
	JEONG1266_13300	0	13	2.141192	flagellar hook-associated protein 3
	JEONG1266_13305	0	13	2.436240	flagellar hook-associated protein FlgK
	JEONG1266_13315	-1	13	2.613483	flagellar rod assembly protein/muramidase FlgJ
	JEONG1266_13325	2	14	2.733717	flagellar biosynthesis protein FlgA
	JEONG1266_13330	3	16	2.623782	flagellar basal body L-ring protein
	JEONG1266_13335	1	17	2.710474	flagellar basal-body rod protein FlgG
	JEONG1266_13340	0	16	2.437720	flagellar biosynthesis protein FlgF
	JEONG1266_13345	1	16	1.140859	flagellar hook protein FlgE
	2534#JEONG1266_13305	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	64	3e-12
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 64.3 bits (156), Expect = 3e-12
		 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 36/288 (12%)
		
		Query: 513  PSEEEFAERKRPEQPALATFAMPDVPPAPT-PAEPAAPVVAPAPKAAPATPATPAQPGLL 571
		            P  E+  +               DVP  P+   E A    AP P  APATP+        
		Sbjct: 983  PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT----- 1037
		
		Query: 572  SRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSER-- 629
		                           ET            +   Q       QN    +  + + ++    
		Sbjct: 1038 ---------------ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082
		
		Query: 630  TEGSDNREENRRNRRQAQQQTAETREGRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQ 689
		             E + +  E +  +    ++TA   +  +    TEK +   +  +    +  +    + Q
		Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142
		
		Query: 690  AQ---QEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV--AEETVVAPV 744
		            A+   +    +N++E   Q     +  +P   +     + Q V    +V      V  P 
		Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPA--KETSSNVEQPVTESTTVNTGNSVVENPE 1200
		
		Query: 745  AEETVAAEPIVQEAPA------PRTELVKVPLPVVAQTAPEQQEENNA 786
		                   +P V    +       R  +  VP  V   T         A
		Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248
		
		
		
		 Score = 63.5 bits (154), Expect = 4e-12
		 Identities = 46/261 (17%), Positives = 81/261 (31%), Gaps = 26/261 (9%)
		
		Query: 551  VAPAPKAAPATPATPAQPGLLSRFFGALKALFSGGEETKPTEQP-APKAEAKPERQQDRR 609
		                             P + S             E  +  E P  P A A P       
		Sbjct: 991  TVDTTNITTPNNIQADVPSVPSN----------NEEIARVDEAPVPPPAPATPSETT--- 1037
		
		Query: 610  KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETREGRQQAEV------T 663
		                      N ++++++      D  E   +NR  A++  +  +   Q  EV      T
		Sbjct: 1038 -----ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092
		
		Query: 664  EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR 723
		            ++ +T + ++    E+  +   +  + Q+  K +  +    QE  +  + +    R    
		Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPK-VTSQVSPKQEQSETVQPQAEPARENDP 1151
		
		Query: 724  QLNQKVRYEQSVAEETVVAPVAEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE 783
		             +N K    Q+        P  E +   E  V E+    T    V  P     A  Q   
		Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211
		
		Query: 784  NNADNRDNGGMPRRSRRSPRH 804
		            N+  +       RRS RS  H
		Sbjct: 1212 NSESSNKPKNRHRRSVRSVPH 1232
		
		
	2535#JEONG1266_13310	FLAGELLIN#Flagellin signature.	46	1e-07
		>FLAGELLIN#Flagellin signature.
		          Length = 507
		
		 Score = 45.8 bits (108), Expect = 1e-07
		 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%)
		
		Query: 7   MMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLAR 66
		           ++ Q N+    +S +  +   E++S+G R+ +  DD    + A   +      +Q +   
		Sbjct: 11  LLTQNNLNKSQSSLSSAI---ERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNA 67
		
		Query: 67  TFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLAN 126
		                     E  L+++   +Q  +E  V A+NGT SD+D  S+  +IQ   +++  ++N
		Sbjct: 68  NDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 127
		
		Query: 127 TTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESIKQQVDASRSMVIGHTGDKIFDSITSN 186
		            T  NG  + +            +G      E+I   +       +G  G  +     + 
		Sbjct: 128 QTQFNGVKVLSQDNQMKIQVGANDG------ETITIDLQKIDVKSLGLDGFNVNGPKEAT 181
		
		Query: 187 AVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKT 232
		                    + T        A        + +     TA    DK 
		Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV 227
		
		
	2536#JEONG1266_13315	FLGHOOKAP1#Flagellar hook-associated protein signature.	677	0.0
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score =  677 bits (1747), Expect = 0.0
		 Identities = 541/546 (99%), Positives = 543/546 (99%)
		
		Query: 2   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 61
		           SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS
		Sbjct: 1   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60
		
		Query: 62  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 121
		           GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV
		Sbjct: 61  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120
		
		Query: 122 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 181
		           SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND
		Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180
		
		Query: 182 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 241
		           QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA
		Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240
		
		Query: 242 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 301
		           RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL
		Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300
		
		Query: 302 ALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIGATVTDASAVLATD 361
		           ALAFAEAFN+QHKAGFDANGD GEDFFAIGKPAVLQNTKN G+VAIGATVTDASAVLATD
		Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATD 360
		
		Query: 362 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 421
		           YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV
		Sbjct: 361 YKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIV 420
		
		Query: 422 NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 481
		           NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN
		Sbjct: 421 NMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGN 480
		
		Query: 482 KTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 541
		           KTATLKTSS TQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD
		Sbjct: 481 KTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFD 540
		
		Query: 542 ALINIR 547
		           ALINIR
		Sbjct: 541 ALINIR 546
		
		
	2537#JEONG1266_13320	FLGFLGJ#Flagellar protein FlgJ signature.	508	0.0
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score =  508 bits (1308), Expect = 0.0
		 Identities = 311/313 (99%), Positives = 311/313 (99%)
		
		Query: 1   MISDSKLLASAAWDAQSLNELKAKASEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60
		           MISDSKLLASAAWDAQSLNELKAKA EDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG
		Sbjct: 1   MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60
		
		Query: 61  LFSSEHTRLYTSMYDQQIAQQMTTGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120
		           LFSSEHTRLYTSMYDQQIAQQMT GKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET
		Sbjct: 61  LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120
		
		Query: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180
		           VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL
		Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAAL 180
		
		Query: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240
		           ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL
		Sbjct: 181 ESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYL 240
		
		Query: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300
		           EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK
		Sbjct: 241 EALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSISDK 300
		
		Query: 301 VSKTYSMNIDNLF 313
		           VSKTYSMNIDNLF
		Sbjct: 301 VSKTYSMNIDNLF 313
		
		
	2538#JEONG1266_13325	FLGPRINGFLGI#Flagellar P-ring protein signature.	427	e-152
		>FLGPRINGFLGI#Flagellar P-ring protein signature.
		          Length = 373
		
		 Score =  427 bits (1098), Expect = e-152
		 Identities = 156/363 (42%), Positives = 213/363 (58%), Gaps = 9/363 (2%)
		
		Query: 4   FLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVGLDGTGDQTTQTPFTTQTLN 63
		           F +   L      A   RI+D+ S+Q  R N LIGYGLVVGL GTGD    +PFT Q++ 
		Sbjct: 13  FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72
		
		Query: 64  NMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQTIDVVVSSMGNAKSLRGGTLLM 123
		            ML  LGIT   G +   KN+AAVMVTA+LPPF   G  +DV VSS+G+A SLRGG L+M
		Sbjct: 73  AMLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131
		
		Query: 124 TPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAVIERELPSQFGVGN 183
		           T L G D Q+YA+AQG ++V G  A    +++        R+ NGA+IERELPS+F    
		Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSV 191
		
		Query: 184 TLNLQLNDEDFSMAQQIADTINRVR----GYGSATALDARTIQVRVPSGNSSQVRFLADI 239
		            L LQL + DFS A ++AD +N       G   A   D++ I V+ P   +   R +A+I
		Sbjct: 192 NLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEI 250
		
		Query: 240 QNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAIAQGNLSVTVNRQANVSQPDTPFGG 299
		           +N+ V  T   AKVVIN RTG++V+  +V +   A++ G L+V V     V QP  PF  
		Sbjct: 251 ENLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSR 308
		
		Query: 300 GQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRALNALGATPMDLMSILQSMQSAGCLR 359
		           GQT V PQT I   Q G  + ++     L  +V  LN++G     +++ILQ ++SAG L+
		Sbjct: 309 GQTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367
		
		Query: 360 AKL 362
		           A+L
		Sbjct: 368 AEL 370
		
		
	2539#JEONG1266_13330	FLGLRINGFLGH#Flagellar L-ring protein signature.	349	e-126
		>FLGLRINGFLGH#Flagellar L-ring protein signature.
		          Length = 232
		
		 Score =  349 bits (897), Expect = e-126
		 Identities = 232/232 (100%), Positives = 232/232 (100%)
		
		Query: 1   MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60
		           MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY
		Sbjct: 1   MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINY 60
		
		Query: 61  GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120
		           GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA
		Sbjct: 61  GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNA 120
		
		Query: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180
		           RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF
		Sbjct: 121 RADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRF 180
		
		Query: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
		           SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM
		Sbjct: 181 SGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
		
		
	2540#JEONG1266_13335	FLGHOOKAP1#Flagellar hook-associated protein signature.	44	4e-07
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score = 43.8 bits (103), Expect = 4e-07
		 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
		
		Query: 3  SSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTL 62
		          S +  A +GL+A Q  ++  +NN+++ +  G+ RQ  +               +   +TL
		Sbjct: 2  SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47
		
		Query: 63 PSGLQIGTGVRPVATERLHSQ 83
		           +G  +G GV     +R +  
		Sbjct: 48 GAGGWVGNGVYVSGVQREYDA 68
		
		
		
		 Score = 41.1 bits (96), Expect = 3e-06
		 Identities = 11/41 (26%), Positives = 21/41 (51%)
		
		Query: 220 ETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260
		             S VN+ EE  N+ + Q+ Y  N++ + T + +   L  +
		Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
		
		
	2542#JEONG1266_13345	FLGHOOKAP1#Flagellar hook-associated protein signature.	41	4e-06
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score = 41.5 bits (97), Expect = 4e-06
		 Identities = 17/49 (34%), Positives = 29/49 (59%)
		
		Query: 353 TLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 401
		            L+N     S V+L +E  N+   Q+ Y +NAQ ++T + I + L+N+R
		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
		
		
		
		 Score = 37.2 bits (86), Expect = 1e-04
		 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
		
		Query: 6  AVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57
		          A+SGLNAA   L+   NNI++    G+   T   A     + AG  VG GV V+G+
		Sbjct: 7  AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62
		
		
JEONG1266_14215	JEONG1266_14255	N	Y	N	JEONG1266_14140	JEONG1266_14335
	JEONG1266_14215	1	23	-2.587463	molecular chaperone
	JEONG1266_14220	1	26	-4.624814	adhesin
	JEONG1266_14225	1	29	-5.558504	molecular chaperone
	JEONG1266_14230	2	36	-10.669307	oxidoreductase
	JEONG1266_14235	1	39	-13.236301	transcriptional regulator
	JEONG1266_14240	-1	35	-11.014562	FidL
	JEONG1266_14245	-1	34	-10.280302	diguanylate phosphodiesterase
	JEONG1266_14250	-1	32	-8.773854	diguanylate cyclase
	JEONG1266_14255	-1	31	-8.212596	poly-beta-1,6 N-acetyl-D-glucosamine export
	2713#JEONG1266_14220	SECA#SecA protein signature.	29	0.018
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 29.1 bits (65), Expect = 0.018
		 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
		
		Query: 163 VTNPTGYYVTIRAAELLNNGKKVPLANSVMIAPQSTTEW-----TLPSGISVAPGAQIHL 217
		           V     + V +    +LN            IA   T E      TLP+ ++   G  +H+
		Sbjct: 78  VFGMRHFDVQLLGGMVLNERC---------IAEMRTGEGKTLTATLPAYLNALTGKGVHV 128
		
		Query: 218 VTVNDY 223
		           VTVNDY
		Sbjct: 129 VTVNDY 134
		
		
	2716#JEONG1266_14240	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	103	7e-29
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  103 bits (259), Expect = 7e-29
		 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 11/255 (4%)
		
		Query: 15  LHNKVAIVTGAAGELGRGLCSALAKAGANLLLVDIK-EPDNRYLKHLTHEGVEVEFMTID 73
		           +  K+A +TGAA  +G  +   LA  GA++  VD   E   + +  L  E    E    D
		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65
		
		Query: 74  ITKPDASCTIINRCLERFGQLDILVNNAGVCNINRPIDFNRNDWDPMINLNLNAAFDMSQ 133
		           +    A   I  R     G +DILVN AGV         +  +W+   ++N    F+ S+
		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125
		
		Query: 134 AALNIFVPQRKGKIINMCSVLSFHGGRWSPG-YAATKHALAGLTKAYADDFAEYNIQING 192
		           +     + +R G I+ + S  +    R S   YA++K A    TK    + AEYNI+ N 
		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPA-GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184
		
		Query: 193 IAPGYYVSEMTAIIYNNPKIKE-LIKGR-------IPAQRWGRAQDLMGAMVFLASAASD 244
		           ++PG   ++M   ++ +    E +IKG        IP ++  +  D+  A++FL S  + 
		Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244
		
		Query: 245 YVNGQLLVIDGGYSI 259
		           ++    L +DGG ++
		Sbjct: 245 HITMHNLCVDGGATL 259
		
		
	2718#JEONG1266_14250	TRNSINTIMINR#Translocated intimin receptor (Tir) signature.	30	0.004
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.
		          Length = 549
		
		 Score = 30.1 bits (67), Expect = 0.004
		 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
		
		Query: 5   YFLFAGIILCAFIAAILSHIAFHHANEPAEQNISCNAHVI 44
		           Y L + +I+   I A ++  A H  N+PAEQ  +   H +
		Sbjct: 366 YGLSSALIVAGGIGAGVT-TALHRRNQPAEQTTTTTTHTV 404
		
		
	2720#JEONG1266_14260	BINARYTOXINA#Clostridial binary toxin A signature.	30	0.025
		>BINARYTOXINA#Clostridial binary toxin A signature.
		          Length = 454
		
		 Score = 29.6 bits (66), Expect = 0.025
		 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
		
		Query: 335 DQVIKTVVNIIGKSIRPDDLLA--RVGGEEFGVLLTDIDTERAKALAERIRENVERLTGD 392
		           D  +  + N +  +  P +L+   R G +EFG+ LT  + +  K   E I    E+  G 
		Sbjct: 313 DSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNK--IENIDAFKEKWEGK 370
		
		Query: 393 NPEYAIPQKVTISIGAV 409
		              Y  P  ++ SIG+V
		Sbjct: 371 VITY--PNFISTSIGSV 385
		
		
	2721#JEONG1266_14265	ARGDEIMINASE#Bacterial arginine deiminase signature.	30	0.047
		>ARGDEIMINASE#Bacterial arginine deiminase signature.
		          Length = 409
		
		 Score = 29.8 bits (67), Expect = 0.047
		 Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 23/183 (12%)
		
		Query: 450 WPRAAENELKK-AEVIEPRNINLEVEQAWTALTLQEWQQA--AVLTHDVVEREPQDPGVV 506
		           +   A  E +  A +++   + +E  +   +  L          ++  ++E E +    +
		Sbjct: 47  YLEVARQEHEVFASILKNNLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTI 106
		
		Query: 507 -RLK---RAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYS---PPLKDNWRGFA 559
		             LK    ++ + N+    I+G      E  +      DL          P+ +    F 
		Sbjct: 107 NLLKDYFSSLTIDNMISKMISGVVT--EELKNYTSSLDDLVNGANLFIIDPMPNVL--FT 162
		
		Query: 560 GFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVFNHEHKPGARLSGWYDFNDN 619
		                D   S G G+    +  +  + R    E  +AE +F +       +  W +  + 
		Sbjct: 163 ----RDPFASIGNGVT---INKMFTKVRQ--RETIFAEYIFKYHPVYKENVPIWLNRWEE 213
		
		Query: 620 WRI 622
		             +
		Sbjct: 214 ASL 216
		
		
JEONG1266_15540	JEONG1266_15580	N	Y	N	JEONG1266_15465	JEONG1266_15660
	JEONG1266_15540	0	12	0.195117	transporter
	JEONG1266_15545	0	13	0.328219	DNA-binding transcriptional regulator
	JEONG1266_15550	1	15	0.142012	hypothetical protein
	JEONG1266_15555	0	15	-0.694904	sugar-phosphatase
	JEONG1266_15560	-2	14	0.306933	hypothetical protein
	JEONG1266_15565	0	12	0.201751	multidrug transporter MdfA
	JEONG1266_15570	-1	10	-0.179203	undecaprenyl-diphosphate phosphatase
	JEONG1266_15575	-1	11	0.055314	DNA-binding transcriptional repressor DeoR
	JEONG1266_15580	0	9	-0.561904	peptidase M15
	2966#JEONG1266_15540	TCRTETA#Tetracycline resistance protein signature.	32	0.006
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 32.1 bits (73), Expect = 0.006
		 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
		
		Query: 394 LMIGMITFQFSTFSFGMGNAAGLLFAGIML-GFMRANHPTFG-YIPQ--GALSMVKEFGL 449
		           L++ +                 +L+ G ++ G   A     G YI          + FG 
		Sbjct: 76  LLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF 135
		
		Query: 450 MVFMAGVGLSAGSGINNGLGAIGGQM--LIAGLIVSLVPVVICFLF 493
		           M    G G+ AG  +   +G          A  +  L  +  CFL 
		Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181
		
		
	2967#JEONG1266_15545	HTHTETR#TetR bacterial regulatory protein HTH signature.	50	6e-10
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 49.6 bits (118), Expect = 6e-10
		 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
		
		Query: 2  RRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAFS 61
		           +    + R+ I+   L      G+ + +  +IA  AGV  G++ ++F    +L  E + 
		Sbjct: 5  TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW- 63
		
		Query: 62 SFTEIMSRQYQAFFSDVSDAQGA 84
		             E+          +       
		Sbjct: 64 ---ELSESNIGELELEYQAKFPG 83
		
		
	2968#JEONG1266_15550	TCRTETB#Tetracycline resistance protein TetB signature.	34	0.001
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 33.7 bits (77), Expect = 0.001
		 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
		
		Query: 218 LLIGVVVLAMAFAEGSANDWL-PLLMVDGHGFSP-TSGSLIYAGFTLGMTVGRFTGGWFI 275
		            +IGV+   + F   +    + P +M D H  S    GS+I    T+ + +  + GG  +
		Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILV 317
		
		Query: 276 DRYSRVAVVR-ASALM--GALGIGLIIFVDSAWVA-GVSVVLWGLGASLGFPLTISAASD 331
		           DR   + V+      +    L    ++   S ++   +  VL GL  +     TI ++S 
		Sbjct: 318 DRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSL 377
		
		Query: 332 TGPDAPTRVSVVATTGYLAFLVGPPLLGYL 361
		              +A   +S++  T +L+   G  ++G L
		Sbjct: 378 KQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
		
		
	2971#JEONG1266_15565	TCRTETA#Tetracycline resistance protein signature.	40	1e-05
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 39.8 bits (93), Expect = 1e-05
		 Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 23/269 (8%)
		
		Query: 71  LLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRFLQGISLCFIGAVGYAAI 130
		           +LG LSDR GRRPV+L  +    V    +  A  +    + R + GI+    GAV  A I
		Sbjct: 62  VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYI 120
		
		Query: 131 QESFEEAVCIKITALMANVALIAPLLGPLVG---AAWIHVLPWEGMFVLFAALAAISFFG 187
		            +  +     +    M+       + GP++G     +    P    F   AAL  ++F  
		Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAP----FFAAAALNGLNFLT 176
		
		Query: 188 LQRAMPETATRIGEKLSLKELGRDYKLVLKNG-RFVAGALALGFVSLPLLAWIAQSP--I 244
		               +PE+       L  + L          G   VA  +A+ F    ++  + Q P  +
		Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF----IMQLVGQVPAAL 232
		
		Query: 245 IIITGEQLSSYEYGLLQVPIFGALIAGNL----LLARLTSRRTVRSLIIMGGWPIMIGLL 300
		            +I GE    ++   + + +    I  +L    +   + +R   R  +++G      G +
		Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292
		
		Query: 301 VAAAATVISSHAYLWMTAGLSIYAFGIGL 329
		           + A AT      ++     + + + GIG+
		Sbjct: 293 LLAFAT----RGWMAFPIMVLLASGGIGM 317
		
		
	2974#JEONG1266_15580	BLACTAMASEA#Beta-lactamase class A signature.	43	8e-07
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 43.2 bits (102), Expect = 8e-07
		 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 34/201 (16%)
		
		Query: 16  AFLFLFAPTAFAAEQTVEAPSVDARAW----------ILMDYASGKVLAEGNADEKLDPA 65
		             + L A    A       P    +            I MD ASG+ L    ADE+    
		Sbjct: 7   CIISLLATLPLAV-HASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65
		
		Query: 66  SLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLN 125
		           S  K++    V   + A   +L   +   +      +P      V      D ++V +L 
		Sbjct: 66  STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP------VSEKHLADGMTVGELC 119
		
		Query: 126 KGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTT---FQTVHGLDAPGQF- 181
		              I  S N A   L   V G        +  + +++G   T    ++T      PG   
		Sbjct: 120 AAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDNVTRLDRWETELNEALPGDAR 174
		
		Query: 182 --STARDMA------LLGKAL 194
		             +T   MA      L  + L
		Sbjct: 175 DTTTPASMAATLRKLLTSQRL 195
		
		
JEONG1266_15810	JEONG1266_15835	N	Y	N	JEONG1266_15735	JEONG1266_15930
	JEONG1266_15810	-2	13	-2.288424	ATP-dependent RNA helicase RhlE
	JEONG1266_15815	-2	19	3.640803	transcriptional regulator
	JEONG1266_15820	-2	19	3.780045	secretion protein HlyD
	JEONG1266_15825	-2	21	3.503608	multidrug ABC transporter ATP-binding protein
	JEONG1266_15830	-2	21	3.608952	hypothetical protein
	JEONG1266_15835	-2	21	3.129894	hypothetical protein
	3020#JEONG1266_15820	SECA#SecA protein signature.	30	0.025
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 29.8 bits (67), Expect = 0.025
		 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
		
		Query: 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG-NKSQGARTRALADFKSGDIRVLVATDI 304
		           Q VLV T +   +  ++ +L K GI+   ++    +  A   A A + +    V +AT++
		Sbjct: 450 QPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNM 506
		
		Query: 305 AARGLDI 311
		           A RG DI
		Sbjct: 507 AGRGTDI 513
		
		
	3021#JEONG1266_15825	HTHTETR#TetR bacterial regulatory protein HTH signature.	73	7e-18
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 72.7 bits (178), Expect = 7e-18
		 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 17/214 (7%)
		
		Query: 9   KGEQAKKQLIAAALAQFGEYGMNATT-REIAAQAGQNIAAITYYFGSKEDLYLACAQWIA 67
		           + ++ ++ ++  AL  F + G+++T+  EIA  AG    AI ++F  K DL+    +   
		Sbjct: 8   EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67
		
		Query: 68  DFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQL 127
		             IGE      E   +    P    + +RE+++    + +    +   + +  F   E +
		Sbjct: 68  SNIGELEL---EYQAKFPGDP---LSVLREILIHVLESTVTEERRRLLMEII-FHKCEFV 120
		
		Query: 128 SPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETIL 187
		              A        +    +  + + +      +A      L T      +  +  G     
		Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKH--CIEAKMLPADLMTRRAAIIMRGYISG----- 173
		
		Query: 188 LRTGWTAFDEEKTELINQTVTCHIDLILQGLSQR 221
		           L   W    +     + +    ++ ++L+     
		Sbjct: 174 LMENWLFAPQSFD--LKKEARDYVAILLEMYLLC 205
		
		
	3022#JEONG1266_15830	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	62	6e-13
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 62.2 bits (151), Expect = 6e-13
		 Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 25/259 (9%)
		
		Query: 82  ALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRT 141
		              Q +  +   +A+   +LA     E        +    +    +    +   L +   
		Sbjct: 201 QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK 260
		
		Query: 142 ISA--NDLENARSSRDQAQATLKSAQDKLRQYRSGNREQ---DIAQAKASLEQAQAQLAQ 196
		                N+L   +S  +Q ++ + SA+++ +      + +    + Q   ++     +LA+
		Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAK 320
		
		Query: 197 AELNLQDSTLIAPSDGTLLTRAV-EPGTVLNEGGTVFTVSLT-RPVWVRAYVDERNLDQA 254
		            E   Q S + AP    +    V   G V+    T+  +      + V A V  +++   
		Sbjct: 321 NEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFI 380
		
		Query: 255 QPGRKVLLYTDGRPDKPYH---GQIGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVT--- 308
		             G+  ++  +  P   Y    G++  ++  A          D R  LV+ + I +    
		Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENC 432
		
		Query: 309 ----DADDALRQGMPVTVQ 323
		               + +  L  GM VT +
		Sbjct: 433 LSTGNKNIPLSSGMAVTAE 451
		
		
	3023#JEONG1266_15835	PF05272#Virulence-associated E family protein	32	0.012
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 31.6 bits (71), Expect = 0.012
		 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
		
		Query: 293 TPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAV 352
		            PR E   + +LG       P               +   + + K         HV   +
		Sbjct: 547 VPRLEKWLVHVLGKTPDDYKP-------------RRLRYLQLVGKYI----LMGHVARVM 589
		
		Query: 353 KRGEIFG----LLGPNGAGKSTTFKMMCGL 378
		           + G  F     L G  G GKST    + GL
		Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
		
		
		
		 Score = 29.7 bits (66), Expect = 0.046
		 Identities = 11/23 (47%), Positives = 13/23 (56%)
		
		Query: 34  YVTGLVGPDGAGKTTLMRMLAGL 56
		           Y   L G  G GK+TL+  L GL
		Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
		
		
	3025#JEONG1266_15845	ABC2TRNSPORT#ABC-2 type transport system membrane protein signat...	47	3e-08
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein
		           signature.
		          Length = 262
		
		 Score = 47.2 bits (112), Expect = 3e-08
		 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
		
		Query: 197 AREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALF 256
		            R   Q T + +L + L    I +G+   A   A         IG+ A  + +   L+L 
		Sbjct: 92  GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA---GIGVVAAALGYTQWLSLL 148
		
		Query: 257 YFTMVI--YGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQN 314
		           Y   VI   GL+    G+++++L  +         + + P + LSG V PV+ +P+  Q 
		Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208
		
		Query: 315 LTWINPIRHFTDITKQIYLKDASLDI 340
		                P+ H  D+ + I L    +D+
		Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDV 234
		
		
JEONG1266_15945	JEONG1266_16000	N	Y	N	JEONG1266_15870	JEONG1266_16070
	JEONG1266_15945	9	49	-10.513532	T3SS effector protein NleH
	JEONG1266_15950	7	41	-5.761291	peptidase M85
	JEONG1266_15955	5	37	-4.805410	non-LEE encoded effector protein NleB
	JEONG1266_15960	2	23	0.317951	phage tail protein
	JEONG1266_15965	2	25	1.945982	phage tail protein
	JEONG1266_15970	3	27	5.321348	enterobacterial Ail/Lom family protein
	JEONG1266_15975	3	26	5.566981	host specificity protein J
	JEONG1266_15980	3	26	4.902258	phage tail protein
	JEONG1266_15985	2	22	4.028161	phage tail protein
	JEONG1266_15990	3	24	3.599247	phage minor tail protein L
	JEONG1266_15995	3	26	3.083998	phage tail protein
	JEONG1266_16000	3	25	2.634034	phage tail tape measure protein
	3047#JEONG1266_15955	YERSSTKINASE#Yersinia serine/threonine protein kinase signature.	29	0.039
		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.
		          Length = 732
		
		 Score = 28.6 bits (63), Expect = 0.039
		 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
		
		Query: 200 RMDKINGESLLNISSLPAQAEHAIYDMFDRLEQKGILFVDTTETNILYDRAKNEFNPIDI 259
		           +  KIN E+        A   H + D+ + L + G++  D    N+++DRA  E   ID+
		Sbjct: 234 KQGKINSEAYWGTIKFIA---HRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDL 290
		
		Query: 260 SSYNVS 265
		             ++ S
		Sbjct: 291 GLHSRS 296
		
		
	3051#JEONG1266_15975	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	41	9e-06
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 41.2 bits (96), Expect = 9e-06
		 Identities = 45/289 (15%), Positives = 89/289 (30%), Gaps = 30/289 (10%)
		
		Query: 10   LKDGAGKPIQNCTIQLKARRNSTTVVVNTVASENPDE-AGRYSMDVEYGQYSVTLLVEGF 68
		            + D  G+P  N      A +     +  ++     D  A +Y +    G+Y +      +
		Sbjct: 928  VADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDL------Y 981
		
		Query: 69   PPSHAGTITVYEDSQPGTLNDFLGAMSEDDVRPEALRRFELMVEEAARHAEEAKKNAGEA 128
		             P         + +   T N+    +       E + R +         A  ++      
		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE----TT 1037
		
		Query: 129  ETSARNAGISASQAEESAANADTSAGDASESARQAA-ESAAAAKQSEEASSSSASAAAQK 187
		            ET A N+   +   E++  +A  +     E A++A     A  + +E A S S +   Q 
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 188  ASESSQSAAEA------------ELSRKTAESAAGNAARDAT-TATEKARE-----SAES 229
		                  +  E             E+ + T++ +      +      E ARE     + + 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 230  AQSAEQSRIAAEDAVNRIPTVVGPPGPKGEPGPAGPQGPKGDKGERGDT 278
		             QS   +    E       + V  P  +      G    +  +     T
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206
		
		
	3052#JEONG1266_15980	ENTEROVIROMP#Enterobacterial virulence outer membrane protein si...	144	2e-46
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein
		           signature.
		          Length = 171
		
		 Score =  144 bits (365), Expect = 2e-46
		 Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 32/201 (15%)
		
		Query: 1   MRKVCAAILSAAICLAVSGVPAWASEHQSTLSAGYLHASTDAPG-SDDLNGINVKYRYEF 59
		           M+K+      AA+    +G    A    ST++ GY  A +DA G  + + G N+KYRYE 
		Sbjct: 1   MKKIACLSALAAVLAFTAGTSVAA---TSTVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
		
		Query: 60  TDT-LGLITSFSYANAEDEQKTHYSDTRWHEDYVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
		            ++ LG+I SF+Y        T  S T    DY +N+++ + AGP+ R+N+W S Y + G
		Sbjct: 56  DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
		
		Query: 119 VAYSRVSTFSGDYFRVTDNKRKTHDVLTGSDDARYSNTSLAWGAGVQFNPTESVAVDVAY 178
		           V Y +  T               +           S+   ++GAG+QFNP E+VA+D +Y
		Sbjct: 108 VGYGKFQT-------------TEYPTYKHDT----SDYGFSYGAGLQFNPMENVALDFSY 150
		
		Query: 179 EGSGSGDWRTDGFIVGVGYKF 199
		           E S         +I GVGY+F
		Sbjct: 151 EQSRIRSVDVGTWIAGVGYRF 171
		
		
	3053#JEONG1266_15985	SURFACELAYER#Lactobacillus surface layer protein signature.	33	0.005
		>SURFACELAYER#Lactobacillus surface layer protein signature.
		          Length = 439
		
		 Score = 33.5 bits (76), Expect = 0.005
		 Identities = 34/143 (23%), Positives = 45/143 (31%), Gaps = 30/143 (20%)
		
		Query: 965  SVNANSGTLNNVTVNENCTIKGMLEATQV----RGDF---------VKAVSKSFPKQAGT 1011
		            +   +   L NVT +    +K  L+A ++     G F         VKA S    K A  
		Sbjct: 235  AAQYDKKQLTNVTFDTETAVKDALKAQKIEVSSVGYFKAPHTFTVNVKATSNKNGKSATL 294
		
		Query: 1012 WGNTETPNGTVTVTISDDHNFDRQIIIPPIIFNGIAYSDPGSGNNPGGTRYTGYGFEVRK 1071
		                  PN    V  S             I+ N   Y            +  G     R 
		Sbjct: 295  PVTVTVPNVADPVVPSQSKT---------IMHNAYFYDKDA--------KRVGTDKVTRY 337
		
		Query: 1072 NGVLIASRETKGAIPGSYSAVID 1094
		            N V +A   TK A   SY  VI+
		Sbjct: 338  NTVTVAMNTTKLANGISYYEVIE 360
		
		
	3058#JEONG1266_16010	cloacin#Cloacin signature.	44	3e-06
		>cloacin#Cloacin signature.
		          Length = 551
		
		 Score = 43.5 bits (102), Expect = 3e-06
		 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
		
		Query: 519 DQQRLNDLQEKKRQKDLQDAK--EQAERNYQEQQKRRNAENAALNRMNETEAARHQREIA 576
		           DQ +    +E +RQ++       E AERNY+  +   N  N  + R  E +A   Q   +
		Sbjct: 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNS 353
		
		Query: 577 RINAMQYADQAVRDA-AIQRENERYEKALASGKKKTRETRNDEATRLLLQYSQQQAQVEG 635
		           R + +  A++ + DA A  ++  R+     +G  +  +    +A R     + +QA  + 
		Sbjct: 354 RKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413
		
		Query: 636 QIAAARQSAGIATERMTEARKQ 657
		             A  +  A  A     E+RK+
		Sbjct: 414 -AAKEKSDADAALSSAMESRKK 434
		
		
JEONG1266_17115	JEONG1266_17140	N	Y	N	JEONG1266_17040	JEONG1266_17235
	JEONG1266_17115	-2	16	4.627677	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
	JEONG1266_17120	-1	16	4.885458	isochorismatase
	JEONG1266_17125	-1	16	5.388003	2,3-dihydroxybenzoate-AMP ligase
	JEONG1266_17130	0	15	5.662124	isochorismate synthase
	JEONG1266_17135	0	15	5.639968	Fe2+-enterobactin ABC transporter
	JEONG1266_17140	1	14	3.495860	enterobactin transporter
	3261#JEONG1266_17120	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	362	e-130
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score =  362 bits (930), Expect = e-130
		 Identities = 110/258 (42%), Positives = 150/258 (58%), Gaps = 20/258 (7%)
		
		Query: 5   GKNVWVTGAGKGIGYATALAFVEAGAKVTGFD---------------QAFAQEQYPFATE 49
		           GK  ++TGA +GIG A A      GA +   D               +A   E +P    
		Sbjct: 8   GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP---- 63
		
		Query: 50  VMDVADAAQVAQVCQRLLAETERLDVLVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 109
		             DV D+A + ++  R+  E   +D+LVN AG+LR G    LS E+W+ TF+VN  G FN
		Sbjct: 64  -ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122
		
		Query: 110 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 169
		             +        +R G+IVTV S+ A  PR  M+AY +SKAA       +GLELA   +RC
		Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182
		
		Query: 170 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDL 229
		           N+VSPGST+TDMQ +LW  ++  EQ I+G  E FK GIPL K+A+P +IA+ +LFL S  
		Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242
		
		Query: 230 ASHITLQDIVVDGGSTLG 247
		           A HIT+ ++ VDGG+TLG
		Sbjct: 243 AGHITMHNLCVDGGATLG 260
		
		
	3262#JEONG1266_17125	ISCHRISMTASE#Isochorismatase signature.	444	e-161
		>ISCHRISMTASE#Isochorismatase signature.
		          Length = 312
		
		 Score =  444 bits (1142), Expect = e-161
		 Identities = 146/299 (48%), Positives = 195/299 (65%), Gaps = 18/299 (6%)
		
		Query: 1   MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANI 60
		           MAIP +Q Y +P + D+PQNKV W  +P RA LLIHDMQ+YFV  +      + ++ ANI
		Sbjct: 1   MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60
		
		Query: 61  AALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVDRLTPDADDTV 120
		             L++ C Q  IPV YTAQP  Q+ +DRALL D WGPGL   P ++K++  L P+ DD V
		Sbjct: 61  RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120
		
		Query: 121 LVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180
		           L KWRYSAF R+ L +M+++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD
		Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180
		
		Query: 181 FSRDEHLMSLKYVAGRSGRVVMTEELL------PAPIPASKA-----------ALREVIL 223
		           FS ++H M+L+Y AGR    VMT+ LL      PA +  + A            +R+ I 
		Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240
		
		Query: 224 PLLDESDEPFDDD-NLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLS 281
		            LL E+ E   D  +L+D GLDSVR+M L  +WR+   ++ FV LA+ PTI+ W KLL+
		Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299
		
		
	3265#JEONG1266_17140	FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.	64	1e-13
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.
		          Length = 296
		
		 Score = 63.8 bits (155), Expect = 1e-13
		 Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 35/285 (12%)
		
		Query: 40  HTLESQPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQ 99
		           H     P RIV+        LLA+               VAD   + R W     E  L 
		Sbjct: 29  HAAAIDPNRIVALEWLPVELLLALGIVPYG---------VADTINY-RLW---VSEPPLP 75
		
		Query: 100 RLYIG-----EPSTEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQA 154
		              I      EP+ E +    P  ++ SA  G S     + L+ IAP    N+ D     
		Sbjct: 76  DSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPL 131
		
		Query: 155 L-----LTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLW 209
		                 LT++ ++   +  A   +AQ++  + + K +          +          ++
		Sbjct: 132 AMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVF 191
		
		Query: 210 TPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQ 269
		            P S   ++L++ G          NA Q +        +  + LAA  + + L     + 
		Sbjct: 192 GPNSLFQEILDEYGIP--------NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNS 243
		
		Query: 270 KDADAIYANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERL 314
		           KD DA+ A PL   +P V+  +   +    F     SAM  +  L
		Sbjct: 244 KDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVL 288
		
		
	3266#JEONG1266_17145	TCRTETA#Tetracycline resistance protein signature.	36	2e-04
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 36.0 bits (83), Expect = 2e-04
		 Identities = 82/394 (20%), Positives = 145/394 (36%), Gaps = 38/394 (9%)
		
		Query: 27  FISIVSLGLLGVAVPVQIQMMTHSTWQV---GLSVTLTGGAMFVGLMVGGVLADRYERKK 83
		            +  V +GL+   +P  ++ + HS       G+ + L     F    V G L+DR+ R+ 
		Sbjct: 15  ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74
		
		Query: 84  VILLARGTCGIGFIGLCLNALL--PEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGR 141
		           V+L       +   G  ++  +    P L  +Y+  +  G   + G  A  A    +   
		Sbjct: 75  VLL-------VSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA-GAYIADITDG 126
		
		Query: 142 ENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPP 201
		           +   +           G V  P++GGL+   GG + +    AA     L  L     LP 
		Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM---GGFSPHAPFFAAAALNGLNFLTGCFLLPE 183
		
		Query: 202 PPQPREHPLK----SLLAGFRFLLASPLVGGIALLGGLLTMAS----AVRVLYPALADNW 253
		             +    PL+    + LA FR+     +V  +  +  ++ +      A+ V++    D +
		Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG--EDRF 241
		
		Query: 254 QMSAAQIGFLYAAIP-LGAAIGALTSGKLAHSARPGLLMLLSTLGS---FLAIGLFGLMP 309
		              A  IG   AA   L +   A+ +G +A        ++L  +     ++ +       
		Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301
		
		Query: 310 MWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGG 369
		           M    +V LA  G            ML  Q  E   G++ G   A       +G  L   
		Sbjct: 302 MAFPIMVLLASGGIGMPALQ----AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357
		
		Query: 370 LGAMMTPVASASASGFGLLIIGVLLLLVLVELRR 403
		           + A     +  + +G+  +    L LL L  LRR
		Sbjct: 358 IYA----ASITTWNGWAWIAGAALYLLCLPALRR 387
		
		
JEONG1266_17235	JEONG1266_17265	N	Y	N	JEONG1266_17160	JEONG1266_17365
	JEONG1266_17235	-1	17	1.412136	cation transporter
	JEONG1266_17240	-1	19	2.377338	efflux transporter periplasmic adaptor subunit
	JEONG1266_17245	0	20	2.330952	copper-binding protein
	JEONG1266_17250	-2	18	2.497872	copper transporter
	JEONG1266_17260	-1	22	4.370505	DNA-binding response regulator
	JEONG1266_17265	0	23	4.309440	two-component sensor histidine kinase
	3285#JEONG1266_17245	ACRIFLAVINRP#Acriflavin resistance protein family signature.	694	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score =  694 bits (1793), Expect = 0.0
		 Identities = 213/1058 (20%), Positives = 439/1058 (41%), Gaps = 54/1058 (5%)
		
		Query: 1    MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI 60
		            M  + IRR         + A+ L + G   I+  PV   P ++   V +  +YPG   Q 
		Sbjct: 1    MANFFIRR----PIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQT 56
		
		Query: 61   VENQVTYPLTTTMLSVPGAKTVRGFSQ-FGDSYVYVIFEDGTDPYWARSRVLEYLNQVQG 119
		            V++ VT  +   M  +     +   S   G   + + F+ GTDP  A+ +V   L     
		Sbjct: 57   VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATP 116
		
		Query: 120  KLPAGVSAELGP-DATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVA 178
		             LP  V  +    + +   ++     V  +      D+       +K  L  +  V +V 
		Sbjct: 117  LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQ 176
		
		Query: 179  SVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELA------EAEYMVR 232
		              G      ++ +D   L +Y ++  +V + L   N +     +         +    + 
		Sbjct: 177  LFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235
		
		Query: 233  ASGYLQTLDDFNHIVLKASENGVPVYLRDVAKIQVGPEMRRGIAELNG-EVVGGVVILRS 291
		            A    +  ++F  + L+ + +G  V L+DVA++++G E    IA +NG    G  + L +
		Sbjct: 236  AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLAT 295
		
		Query: 292  GKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVC 351
		            G NA +   A+K KL  L+   P+G++++  YD +  +  +I  +   L E  ++V +V 
		Sbjct: 296  GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355
		
		Query: 352  ALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIEN 411
		             LFL ++R+ L+  I++P+ L   F ++   G + N +++ G+ +A+G +VD AIV++EN
		Sbjct: 356  YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415
		
		Query: 412  AHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLIITLSFIPIFTLEGQEGR 471
		              + + E          D     +    +  ++  AL    ++++  FIP+    G  G 
		Sbjct: 416  VERVMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465
		
		Query: 472  LFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRF----------LIR 521
		            ++   + T   AMA + L+A+++ P L    ++  +  E       F           + 
		Sbjct: 466  IYRQFSITIVSAMALSVLVALILTPALCATLLKP-VSAEHHENKGGFFGWFNTTFDHSVN 524
		
		Query: 522  VYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAA 581
		             Y   + K+L      LL+ AL V  ++    ++   FLP+ ++G  L M     G +  
		Sbjct: 525  HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584
		
		Query: 582  EAASMLQKTDKLIM--SVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQW-RPGM 638
		                +L +     +      V  VF   G + +             + LKP E+      
		Sbjct: 585  RTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERNGDEN 641
		
		Query: 639  TMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADI-DAMAEQ 697
		            + + +I      +       +    +   +++ +        I  +G     +  A  + 
		Sbjct: 642  SAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQL 701
		
		Query: 698  IEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGET 757
		            +   A+    + S     LE      +E+++EKA   G++++D+   +++A+GG  V + 
		Sbjct: 702  LGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761
		
		Query: 758  VEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENAR 817
		            ++      + ++    +R  P+ + +L + +   + +  +         G   L+  N  
		Sbjct: 762  IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGL 821
		
		Query: 818  PTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMT 877
		            P+  I  +A           L + +A K  L  G    ++G       + ++   +V ++
		Sbjct: 822  PSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAIS 879
		
		Query: 878  LMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 937
		             +++F+ L   +      + ++  VP  +VG +           V    G +   G++A+
		Sbjct: 880  FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939
		
		Query: 938  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALHHGAVLRVRPKAMTVAVIIAGLLPIL 997
		              ++++ + +  +E E           + + EA      +R+RP  MT    I G+LP+ 
		Sbjct: 940  NAILIVEFAKDLMEKE----------GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989
		
		Query: 998  WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKL 1035
		               GAGS   + +   ++GGM++A LL++F +P  + +
		Sbjct: 990  ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027
		
		
	3288#JEONG1266_17260	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	38	9e-05
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 37.5 bits (87), Expect = 9e-05
		 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 13/182 (7%)
		
		Query: 254 QAQTVNSDSLQSVKLPA-GLSSQILLQRPDIMEAEHALM-----AANANIGAARAAFFPS 307
		             +  +S   + +K     +  +I+++  + +     L+      A A+    ++     
		Sbjct: 87  NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQS----- 141
		
		Query: 308 ISLTSGISTASSDLSSLFNASSGMWNFIPKIEIPIFNAGRNQANLDIAEIRQQQSVVNYE 367
		            SL       +       +        +   + P F     +  L +  + ++Q      
		Sbjct: 142 -SLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200
		
		Query: 368 QKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRARALYQHGAVSYLEVLDAER 427
		           QK Q     +    A R ++  +I+  +      +  L    +L    A++   VL+ E 
		Sbjct: 201 QKYQ-KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259
		
		Query: 428 SL 429
		             
		Sbjct: 260 KY 261
		
		
	3289#JEONG1266_17265	HTHFIS#FIS bacterial regulatory protein HTH signature.	86	2e-21
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 85.7 bits (212), Expect = 2e-21
		 Identities = 35/117 (29%), Positives = 62/117 (52%)
		
		Query: 2   KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61
		            +L+ +D+      L + L+ AG+ V +  N    +     GD DL++ D+++PD N +D
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 62  IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
		           ++  ++ A   +P+L+++A  T    +K  E GA DYL KPF   EL+  +   L  
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		
	3290#JEONG1266_17270	PF06580#Sensor histidine kinase	30	0.018
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 30.2 bits (68), Expect = 0.018
		 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 34/183 (18%)
		
		Query: 306 EELTRMAKMVSDML-FLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDR-GVELQFV 363
		            +   M   +S+++ +  +  N + +       LADE+  V  + + LA  +    LQF 
		Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVS------LADELTVVDSYLQ-LASIQFEDRLQFE 243
		
		Query: 364 GDECQVAGDPLMLRRALSNLLSNALRY----TPPGEAIVVRCQTVDHLVQVIVENPGTPI 419
		                   D  +    +  L+ N +++     P G  I+++    +  V + VEN G+  
		Sbjct: 244 NQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303
		
		Query: 420 APEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVK---SIVVAHKGTVAVTSNARGTRFVI 476
		                                  E +G GL  V+    ++   +  + ++        ++
		Sbjct: 304 LKN------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
		
		Query: 477 VLP 479
		           ++P
		Sbjct: 346 LIP 348
		
		
JEONG1266_17550	JEONG1266_17595	N	Y	N	JEONG1266_17475	JEONG1266_17675
	JEONG1266_17550	-1	18	-2.045554	adhesin
	JEONG1266_17555	-3	14	-0.729982	hypothetical protein
	JEONG1266_17560	-2	18	2.251177	hypothetical protein
	JEONG1266_17565	4	31	8.277682	Cu(I)-responsive transcriptional regulator
	JEONG1266_17570	4	28	8.378434	hemolysin D
	JEONG1266_17575	4	27	8.062728	ATP-binding protein
	JEONG1266_17580	4	26	7.822324	hypothetical protein
	JEONG1266_17585	4	26	7.733608	transporter
	JEONG1266_17590	4	25	7.811749	amino acid permease
	JEONG1266_17595	1	15	4.731568	glutaminase
	3346#JEONG1266_17560	PF03895#Serum resistance protein DsrA.	55	3e-12
		>PF03895#Serum resistance protein DsrA.
		          Length = 79
		
		 Score = 55.2 bits (133), Expect = 3e-12
		 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
		
		Query: 262 RKEANAGTASAIAIASQPQVKTGDVMMVSAGAGTFNGESAVSVGTSFNAGTHTVLKAGIS 321
		            KE   G A+  A++   Q        VSA  G +  ++A+++G           KAG++
		Sbjct: 2   SKELQTGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGVA 61
		
		Query: 322 ADTQS-DFGAGVGVGYSF 338
		            +T +     G  VGY F
		Sbjct: 62  FNTYNGGMSYGASVGYEF 79
		
		
	3350#JEONG1266_17580	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	257	1e-83
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score =  257 bits (657), Expect = 1e-83
		 Identities = 103/434 (23%), Positives = 168/434 (38%), Gaps = 56/434 (12%)
		
		Query: 11  LTEPRLPRSALAV-RVTAVMLLCFLGWAWYFQLDEVTTGSGTVEPSGREQVVQSLEGGIL 69
		           L E  + R    V       L+     +   Q++ V T +G +  SGR + ++ +E  I+
		Sbjct: 48  LIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIV 107
		
		Query: 70  YHLDVKVGDIVEQGQPLAQLNRTKTESDVQEAMSRLYAALATSARLRAEVSNK------P 123
		             + VK G+ V +G  L +L     E+D  +  S L  A     R +    +        
		Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167
		
		Query: 124 LVFPDEL----------------------NKFPELIESETALYNTR--RDGLNKATTGLT 159
		           L  PDE                           +  + E  L   R  R  +        
		Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227
		
		Query: 160 QGISLVNRELAMTQPLVKQGAASSVEVLRLQRQANELEN--------------------- 198
		               +    L     L+ + A +   VL  + +  E  N                     
		Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287
		
		Query: 199 KLSDVRTQYYVQAREELAKANAEVETQRSVIRGREDSLTRLNFTAPVRGIVQDIDVTTVG 258
		           +   V   +  +  ++L +    +      +   E+        APV   VQ + V T G
		Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347
		
		Query: 259 GVIAPGGKLMTIVPLDEQLLIEAKISPRDVAFIHPGQKSLVKITAYDYSIYGGLPGEVAV 318
		           GV+     LM IVP D+ L + A +  +D+ FI+ GQ +++K+ A+ Y+ YG L G+V  
		Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407
		
		Query: 319 ISPDTVQDEVRRDVYYYRVYIRTFSNHLENKSKQQFPIFPGMVATVDIRTGKKSVLDYLL 378
		           I+ D ++D+  R    + V I    N L   +K   P+  GM  T +I+TG +SV+ YLL
		Sbjct: 408 INLDAIEDQ--RLGLVFNVIISIEENCLSTGNK-NIPLSSGMAVTAEIKTGMRSVISYLL 464
		
		Query: 379 KPF-NKAQEALRER 391
		            P      E+LRER
		Sbjct: 465 SPLEESVTESLRER 478
		
		
	3352#JEONG1266_17595	INTIMIN#Intimin signature.	37	5e-04
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 37.4 bits (86), Expect = 5e-04
		 Identities = 63/372 (16%), Positives = 115/372 (30%), Gaps = 44/372 (11%)
		
		Query: 707  QTVTVTLNGQTYQGVVQPDGTWSVTVPAANVGALADGNA--TVTASVNDVAGNPSSVSRV 764
		             T+TV  NGQ    V   D T      A    A ADG    T TA+V       ++V   
		Sbjct: 544  LTITVLSNGQVVDQVGVTDFT------ADKTSAKADGTEAITYTATVKKNGVAQANVPVS 597
		
		Query: 765  ALVDATPPVVTINPVATDNVINTPEHAQAQIISGTVTGAQAGDIVTVTLNNVDYTTVVDG 824
		              + +   V++ N   T+         ++      V  A+  ++ +    N +    VD 
		Sbjct: 598  FNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSAL--NANAVIFVDQ 655
		
		Query: 825  SGNWSLGVPASVVSGLADGSYPVSVSVTDKAGNTGSQSLTVTVNTAAPLIGINSIAGDDV 884
		            +      + A   + +A+G   ++ +V    G+    +  VT  T    +          
		Sbjct: 656  TKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSN-------- 707
		
		Query: 885  INASEKGADLQITGTSDQPVNTAITVTLNGQNYTTTTDASGNWSVTVPASAVTALGQANY 944
		                        T  +D      +T+T      +  +    + +V V A  V        
		Sbjct: 708  -----------STEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFF--TTL 754
		
		Query: 945  TVTAAVTSDIGNSATASHNVLVDSALPGVTINPVATDDIINAAEAGVAQTISGQVTGAED 1004
		            T+       +G          V   LP V +     +   +          +     + D
		Sbjct: 755  TIDDGNIEIVGTG--------VKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVD 806
		
		Query: 1005 GDTVTITL---GGNTYTATVGSN--LTWSVDVPAADIQALGNGDLTVNASVTNQNGNTGS 1059
		              +  +TL   G  T +     N   T+++  P + I    +  +T N +V       G 
		Sbjct: 807  ASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866
		
		Query: 1060 GTRDITIDANLP 1071
		                     N+ 
		Sbjct: 867  LPSSQNELENVF 878
		
		
		
		 Score = 35.0 bits (80), Expect = 0.002
		 Identities = 81/416 (19%), Positives = 139/416 (33%), Gaps = 61/416 (14%)
		
		Query: 841  ADGSYPVSVSVTDKAGN-TGSQSLTVTVNTAAPLIGINSIAGDDVINASEKGADLQITGT 899
		                Y V+    D+ GN + +  LT+TV  +   +       D   + +   AD    GT
		Sbjct: 521  GSNVYKVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKAD----GT 575
		
		Query: 900  SDQPVNTAITVTLNGQNYTTTTDASGNWSVTVPASAVTALGQANYTVTAAVTSDIGNSAT 959
		                   AIT       YT T   +G     VP S     G A  +  +A T     + +
		Sbjct: 576  ------EAIT-------YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT-----NGS 617
		
		Query: 960  ASHNVLVDSALPGVTINPVATDDIINAAEAGVAQTISGQVTGAEDGDTVTITLGGNTYTA 1019
		                V + S  PG  +    T ++ +A  A  A     Q           I     T  A
		Sbjct: 618  GKATVTLKSDKPGQVVVSAKTAEMTSALNAN-AVIFVDQTK----ASITEIKADKTTAVA 672
		
		Query: 1020 TVGSNLTWSVDVPAADIQALGNGDLTVNASVTNQNG----NTGSGTRDITIDANLPG--- 1072
		                 +T++V V   D + + N ++T   ++   +        +G   +T+ +  PG   
		Sbjct: 673  NGQDAITYTVKVMKGD-KPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL 731
		
		Query: 1073 --LRVDTVAGDDVVNIIEHGQALVVTGSS-----SGLAESTP----------LTVTINNV 1115
		               RV  VA D     +E    L +   +     +G+    P          L  +  N 
		Sbjct: 732  VSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG 791
		
		Query: 1116 EYTTAVQADGSWSVGVTAAQVSAWPAGTVNIAVSGESSAGNSVSITHPVTVDLTPAAITI 1175
		            +YT         SV  ++ QV+    GT  I+V    +   + +I        TP ++ +
		Sbjct: 792  KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA-------TPNSLIV 844
		
		Query: 1176 NTIATDDVINAAEKGADLTLSGTTTNVEPGQTVTVTFGGKNYTASVASDGSWTATV 1231
		              ++     N A            ++    + V   +G  N      S  +  + V
		Sbjct: 845  PNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWV 900
		
		
	3353#JEONG1266_17600	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	32	0.006
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 31.7 bits (72), Expect = 0.006
		 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 20/165 (12%)
		
		Query: 199 DELQAQTRIAGMRSTLEQYQAQMASAKAQLAVLTGVQPEAIAAP----PAELAEQPVSLK 254
		             L A+      +S+L Q + +    +     +   +   +  P       ++E+ V   
		Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL-- 185
		
		Query: 255 NIDYQSIPLVLAAENLRQSAQYGVEKTKAQYWPTLSIQGGKTRYQTSDRSYWDDQLQLNV 314
		               +   L+    +  Q+ +Y  E    +            R    +     ++ +L+ 
		Sbjct: 186 ----RLTSLIKEQFSTWQNQKYQKELNLDKK--RAERLTVLARINRYENLSRVEKSRLDD 239
		
		Query: 315 NAPLYQGGAVS--------AQVQQAEGQQKISASQVEQAKLDVLQ 351
		            + L    A++         +  +A  + ++  SQ+EQ + ++L 
		Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284
		
		
	3355#JEONG1266_17610	BLACTAMASEA#Beta-lactamase class A signature.	29	0.021
		>BLACTAMASEA#Beta-lactamase class A signature.
		          Length = 286
		
		 Score = 29.0 bits (65), Expect = 0.021
		 Identities = 11/43 (25%), Positives = 19/43 (44%)
		
		Query: 38 GQLAAVAIVTSDGNVYSAGDSDYRFALESISKVCTLALALEDV 80
		          G++  + +  + G   +A  +D RF + S  KV      L  V
		Sbjct: 38 GRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARV 80
		
		
JEONG1266_17675	JEONG1266_17740	N	Y	N	JEONG1266_17595	JEONG1266_17800
	JEONG1266_17675	3	17	4.671466	DNA polymerase III subunit gamma/tau
	JEONG1266_17680	4	16	4.203523	adenine phosphoribosyltransferase
	JEONG1266_17685	3	17	2.523780	hypothetical protein
	JEONG1266_17690	1	15	0.286804	primosomal replication protein N''
	JEONG1266_17695	1	13	0.531816	hypothetical protein
	JEONG1266_17700	0	16	1.117835	hypothetical protein
	JEONG1266_17705	0	16	0.258267	DNA-binding transcriptional repressor AcrR
	JEONG1266_17710	0	16	0.046375	efflux transporter periplasmic adaptor subunit
	JEONG1266_17715	1	15	-0.432072	aminoglycoside/multidrug transporter permease
	JEONG1266_17720	1	17	-0.139637	Hha toxicity attenuator
	JEONG1266_17725	-1	13	-1.491977	transcriptional regulator
	JEONG1266_17730	1	19	-4.845609	maltose O-acetyltransferase
	JEONG1266_17735	1	19	-3.243783	hypothetical protein
	JEONG1266_17740	-1	18	-1.903911	hypothetical protein
	3370#JEONG1266_17685	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	41	2e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 40.8 bits (95), Expect = 2e-05
		 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 31/251 (12%)
		
		Query: 404  PLPETTSQVLAARQQLQRVQGATKAKKSEPAA----ATRARPVNNAALERLASVTDRVQA 459
		            P  E  +Q +        +      +   P+        AR  + A +   A  T     
		Sbjct: 983  PEVEKRNQTVDTTN----ITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETT 1037
		
		Query: 460  RPVPSALEKAPAKKEAYRWKATTPVMQQKE--------VVATPKALKKA---LEHEKTPE 508
		              V    ++     E     AT    Q +E        V A  +  + A    E ++T  
		Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097
		
		Query: 509  LAAKLAA---------EAIERDAWAAQVSQLSLPKLVEQVALNAWKE-ESDNAVCLHLRS 558
		               K  A            E+     +V+    PK  +   +    E   +N   ++++ 
		Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
		
		Query: 559  SQRHLNNRGAQQKLAEALS-MLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARES 617
		             Q   N     ++ A+  S  ++    E T V   N  V  P     A  +  +     +
		Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217
		
		Query: 618  IIADNNIQTLR 628
		               + + +++R
		Sbjct: 1218 KPKNRHRRSVR 1228
		
		
	3375#JEONG1266_17710	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	32	0.017
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 31.7 bits (72), Expect = 0.017
		 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
		
		Query: 28  QNTAFARASSNGDLPTKADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRVKEE 87
		            N    RA     L      +        +  L     L+ +      A L++ ++  E 
		Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSR--LDDFSSLLHKQAIAKHAVLEQENKYVEA 264
		
		Query: 88  TVQLRQKVAEAPEKMRQATAALTALSDVDND--EETRKIL--STLSLRQLETRVAQALDD 143
		             +LR   ++  +   +  +A      V      E    L  +T ++  L   +A+  + 
		Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER 324
		
		Query: 144 LQNAQ 148
		            Q + 
		Sbjct: 325 QQASV 329
		
		
	3376#JEONG1266_17715	HTHTETR#TetR bacterial regulatory protein HTH signature.	222	5e-76
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score =  222 bits (567), Expect = 5e-76
		 Identities = 215/215 (100%), Positives = 215/215 (100%)
		
		Query: 1   MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
		           MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS
		Sbjct: 1   MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
		
		Query: 61  EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
		           EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV
		Sbjct: 61  EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
		
		Query: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180
		           GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF
		Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180
		
		Query: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215
		           APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE
		Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215
		
		
	3377#JEONG1266_17720	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	44	6e-07
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 44.0 bits (104), Expect = 6e-07
		 Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 23/212 (10%)
		
		Query: 100 TYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTA 159
		             +  Y  A  +L      + + Q+           Q +++   ++ L   +Q    +  
		Sbjct: 256 EQENKYVEAVNELR--VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313
		
		Query: 160 AKAAVETARINLAYTKVTSPISGRIGKSNV-TEGALVQNGQATALATVQQLDPIYVDVTQ 218
		               +         + + +P+S ++ +  V TEG +V   + T +  V + D + V    
		Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALV 372
		
		Query: 219 SSNDFLRLKQELA----------NGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVD 268
		            + D   +                          KV  I  D I+  + G +    ++++
		Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYLV---GKVKNINLDAIEDQRLGLVFNVIISIE 429
		
		Query: 269 QTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300
		           +   S   + I       L  GM V A ++ G
		Sbjct: 430 ENCLSTGNKNIP------LSSGMAVTAEIKTG 455
		
		
		
		 Score = 34.4 bits (79), Expect = 8e-04
		 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
		
		Query: 49  PLQITTELPGR-TSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDS 107
		            ++I     G+ T + R  E++P  + I+ +   KEG  +  G  L ++     +A    
		Sbjct: 79  QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA---- 134
		
		Query: 108 AKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETA 167
		              D  K Q++   A+L   RYQ L         E ++                      
		Sbjct: 135 ---DTLKTQSSLLQARLEQTRYQILS-----RSIELNKLPELKLPDEPYFQNVSEEEVLR 186
		
		Query: 168 RINLA 172
		             +L 
		Sbjct: 187 LTSLI 191
		
		
	3378#JEONG1266_17725	ACRIFLAVINRP#Acriflavin resistance protein family signature.	1369	0.0
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score = 1369 bits (3545), Expect = 0.0
		 Identities = 801/1033 (77%), Positives = 915/1033 (88%), Gaps = 1/1033 (0%)
		
		Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
		            M NFFI RPIFAWV+AII+M+AG LAIL+LPVAQYPTIAPPAV++SA+YPGADA+TVQDT
		Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
		
		Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
		            VTQVIEQNMNGIDNLMYMSS SDS G+V ITLTF+SGTD DIAQVQVQNKLQLA PLLPQ
		Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
		
		Query: 121  EVQQQGVSIEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
		            EVQQQG+S+EKSSSS+LMV G ++ +   TQ+DISDYVA+N+KD +SR +GVGDVQLFG+
		Sbjct: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
		
		Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
		            QYAMRIW++ + LNK++LTPVDVI  +K QN Q+AAGQLGGTP + GQQLNASIIAQTR 
		Sbjct: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240
		
		Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
		             + EEFGK+ L+VN DGS V L+DVA++ELGGENY++IA  NG+PA+GLGIKLATGANAL
		Sbjct: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
		
		Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
		            DTA AI+A+LA+++PFFP G+K++YPYDTTPFV++SIHEVVKTL EAI+LVFLVMYLFLQ
		Sbjct: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
		
		Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
		            N RATLIPTIAVPVVLLGTFA+LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM
		Sbjct: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
		
		Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
		             E+ LPPKEAT KSM QIQGALVGIAMVLSAVF+PMAFFGGSTGAIYRQFSITIVSAMAL
		Sbjct: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
		
		Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
		            SVLVALILTPALCAT+LKP++   H E K GFFGWFN  F+ S +HYT+SVG IL STGR
		Sbjct: 481  SVLVALILTPALCATLLKPVSAE-HHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539
		
		Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
		            YL++Y +IV GM  LF+RLPSSFLP+EDQGVF+TM+QLPAGATQERTQKVL++VT YYL 
		Sbjct: 540  YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599
		
		Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
		             EK NVESVF VNGF F+G+ QN G+AFVSLK W +R G+EN  EA+  RA     +I+D
		Sbjct: 600  NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659
		
		Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
		              V  FN+PAIVELGTATGFDFELIDQAGLGH+ LTQARNQLL  AA+HP  L SVRPNG
		Sbjct: 660  GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719
		
		Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
		            LEDT QFK+++DQEKAQALGVS++DIN T+  A GG+YVNDFIDRGRVKK+YV ++AK+R
		Sbjct: 720  LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779
		
		Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
		            MLP+D+   YVR+A+G+MVPFSAF++S W YGSPRLERYNGLPSMEI G+AAPG S+G+A
		Sbjct: 780  MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839
		
		Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
		            M LME LASKLP G+GYDWTGMSYQERLSGNQAP+L AIS +VVFLCLAALYESWSIP S
		Sbjct: 840  MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899
		
		Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
		            VMLVVPLG++G LLAAT     NDVYF VGLLTTIGLSAKNAILIVEFAKDLM+KEGKG+
		Sbjct: 900  VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959
		
		Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
		            +EATL AVRMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGMV+AT+LAIF
		Sbjct: 960  VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019
		
		Query: 1021 FVPVFFVVVRRRF 1033
		            FVPVFFVV+RR F
		Sbjct: 1020 FVPVFFVVIRRCF 1032
		
		
	3383#JEONG1266_17750	BCTERIALGSPF#Bacterial general secretion pathway protein F signa...	30	0.026
		>BCTERIALGSPF#Bacterial general secretion pathway protein F
		           signature.
		          Length = 408
		
		 Score = 29.8 bits (67), Expect = 0.026
		 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 24/137 (17%)
		
		Query: 245 IWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEA 304
		            W+ L L+ G +A   +LR          R+          + + P++    G+I     
		Sbjct: 228 PWMLLALLAGFMAFRVMLR------QEKRRVS-----FHRRLLHLPLI----GRIARGLN 272
		
		Query: 305 LARWPQTDGSWLSPDSFIPLAQQTGLS-EPLTLLIIRSVFEDMGDWLRQHPQQHISINLE 363
		            AR+ +T     +  S +PL Q   +S + ++    R       D +R+    H +  LE
		Sbjct: 273 TARYARTLSILNA--SAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKA--LE 328
		
		Query: 364 STVLTSEKIPQLLREMI 380
		            T L     P ++R MI
		Sbjct: 329 QTAL----FPPMMRHMI 341
		
		
JEONG1266_17795	JEONG1266_17865	N	Y	N	JEONG1266_17715	JEONG1266_17920
	JEONG1266_17795	-1	15	0.793795	thiamin pyrimidine pyrophosphate hydrolase
	JEONG1266_17800	-2	18	0.343214	hypothetical protein
	JEONG1266_17805	-2	14	0.362354	7-cyano-7-deazaguanine synthase QueC
	JEONG1266_17810	-1	14	0.367954	thioesterase
	JEONG1266_17815	0	19	0.127113	hypothetical protein
	JEONG1266_17820	1	21	0.141506	peptidylprolyl isomerase
	JEONG1266_17825	0	21	0.359398	DNA-binding protein HU
	JEONG1266_17830	2	28	0.087175	endopeptidase La
	JEONG1266_17835	3	28	-0.235187	ATP-dependent protease ATP-binding subunit ClpX
	JEONG1266_17840	3	27	-0.302511	ATP-dependent Clp endopeptidase, proteolytic
	JEONG1266_17845	3	30	-0.823353	trigger factor
	JEONG1266_17850	0	21	-0.018616	hypothetical protein
	JEONG1266_17855	0	22	0.004751	transcriptional regulator BolA
	JEONG1266_17860	-3	19	0.566516	hypothetical protein
	JEONG1266_17865	-2	22	0.939255	muropeptide transporter AmpG
	3393#JEONG1266_17805	HTHFIS#FIS bacterial regulatory protein HTH signature.	29	0.019
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 29.0 bits (65), Expect = 0.019
		 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
		
		Query: 193 LTVLTQHLGLSLRDCMAFGDAMNDREMLGSVGSGFIMGN----------AMPQLRAELPH 242
		            TVL Q L  +  D     +A      + +     ++ +           +P+++   P 
		Sbjct: 16  RTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPD 75
		
		Query: 243 LPVI 246
		           LPV+
		Sbjct: 76  LPVL 79
		
		
	3396#JEONG1266_17820	PF08280#M protein trans-acting positive regulator	28	0.018
		>PF08280#M protein trans-acting positive regulator
		          Length = 530
		
		 Score = 27.5 bits (61), Expect = 0.018
		 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
		
		Query: 1   MQTQIKVRGYHLDVYQHVNNARYL-------EFLEEARWDGLENSDSFHWMTAH------ 47
		           +Q  I      +  Y   N   Y        E++ +       N   FH    +      
		Sbjct: 361 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR 420
		
		Query: 48  ------NIAFVVVN-ININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVA 100
		                  + FV  N IN +    +        +            + Q+  L+P+  +  
		Sbjct: 421 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH 480
		
		Query: 101 DALITFVCIDLKTQKALA 118
		             LI FV  +L    A+A
		Sbjct: 481 SQLIPFVHHELTKGIAVA 498
		
		
	3399#JEONG1266_17835	DNABINDINGHU#Prokaryotic integration host factor signature.	117	3e-38
		>DNABINDINGHU#Prokaryotic integration host factor signature.
		          Length = 91
		
		 Score =  117 bits (294), Expect = 3e-38
		 Identities = 49/88 (55%), Positives = 67/88 (76%)
		
		Query: 2  NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
		          NK  LI K+A   +++K  +  A+DA+ ++V+  L +G+ V L+GFG F V+ERAAR GR
		Sbjct: 3  NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62
		
		Query: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
		          NPQTG+EI I A+KVP+F+AGKALKDAV
		Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
		
		
	3400#JEONG1266_17840	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	34	0.002
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 34.3 bits (78), Expect = 0.002
		 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
		
		Query: 191 ERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPD- 249
		             LE   A +E +  +L      R  +++ ++ S+      +Q++A  ++L E +   + 
		Sbjct: 291 AALEAEKADLEHQSQVLNAN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEA 344
		
		Query: 250 ENEALKRKIDAAKMPKEAKEKAEAELQKLK 279
		             ++L+R +DA++   EAK++ EAE QKL+
		Sbjct: 345 SRQSLRRDLDASR---EAKKQLEAEHQKLE 371
		
		
	3401#JEONG1266_17845	HTHFIS#FIS bacterial regulatory protein HTH signature.	29	0.043
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 29.0 bits (65), Expect = 0.043
		 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
		
		Query: 60  ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119
		           E    P+  E  +     ++G+  A +     +Y    RL   D           +++ G
		Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQ----EIYRVLARLMQTD---------LTLMITG 167
		
		Query: 120 PTGSGKTLLAETL 132
		            +G+GK L+A  L
		Sbjct: 168 ESGTGKELVARAL 180
		
		
	3406#JEONG1266_17870	PF06291#Lambda prophage Bor protein	27	0.029
		>PF06291#Lambda prophage Bor protein
		          Length = 102
		
		 Score = 26.5 bits (58), Expect = 0.029
		 Identities = 11/34 (32%), Positives = 18/34 (52%)
		
		Query: 3  KKILFPLVALFMLAGCARPPTTIEVSPTITLPQQ 36
		          KK+LF      ++ GCA+   T+   PT   P++
		Sbjct: 7  KKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKE 40
		
		
	3407#JEONG1266_17875	TCRTETA#Tetracycline resistance protein signature.	39	3e-05
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 39.0 bits (91), Expect = 3e-05
		 Identities = 71/347 (20%), Positives = 135/347 (38%), Gaps = 20/347 (5%)
		
		Query: 62  KFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLEPGTQLRWMAALAVVIAFCS 121
		           +F  +P++   +  F   RR  LL +     V  A M          W+  +  ++A  +
		Sbjct: 56  QFACAPVLGALSDRF--GRRPVLLVSLAGAAVDYAIMAT----APFLWVLYIGRIVAGIT 109
		
		Query: 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLADKWLGWQGMYWLMA 181
		            +   V  A+  D+   +ER          +  GM+    L   +          ++  A
		Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG--FSPHAPFFAAA 167
		
		Query: 182 AL-LIPCIIATLLAPEP--TDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGD 238
		           AL  +  +    L PE    +  P+ +     + +          A L+ +  ++  +G 
		Sbjct: 168 ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227
		
		Query: 239 AFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLSLFRALLIFGIL 298
		             A +L   F      +DA  +G+     G+L ++  A+  G +  RL   RAL+  G++
		Sbjct: 228 VPA-ALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM-LGMI 285
		
		Query: 299 QGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGTSAFVALLMTLCNKSFSATQFALLS 358
		             A   GY LL+   +   +    V      GG+G  A  A+L    ++         L+
		Sbjct: 286 --ADGTGYILLAFATRGWMAFPIMVLL--ASGGIGMPALQAMLSRQVDEERQGQLQGSLA 341
		
		Query: 359 ALSAVGRVYVGPVAGWFVEAHGWSTF--YLFSVAAAVPGLILLLVCR 403
		           AL+++  + VGP+    + A   +T+  + +   AA+  L L  + R
		Sbjct: 342 ALTSLTSI-VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
		
		
JEONG1266_18065	JEONG1266_18090	N	Y	N	JEONG1266_17985	JEONG1266_18185
	JEONG1266_18065	1	14	2.089753	two-component system sensor histidine kinase
	JEONG1266_18070	2	15	1.901706	phosphate regulon transcriptional regulatory
	JEONG1266_18075	2	14	1.340650	exonuclease subunit SbcD
	JEONG1266_18080	3	16	1.077355	exonuclease subunit SbcC
	JEONG1266_18085	1	19	-0.243494	MFS transporter AraJ
	JEONG1266_18090	-1	19	-0.926363	fructokinase
	3445#JEONG1266_18065	PF06580#Sensor histidine kinase	34	0.001
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 34.1 bits (78), Expect = 0.001
		 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 26/105 (24%)
		
		Query: 325 LVYNAVNH----TPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKAR 380
		           LV N + H     P+G  I ++  +        VE+ G                      
		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306
		
		Query: 381 SRQTGGSGLGLAIVKHAVNH---HESRLNIESTVGKGTRFSFVIP 422
		                 +G GL  V+  +      E+++ +    GK      +IP
		Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
		
		
	3446#JEONG1266_18070	HTHFIS#FIS bacterial regulatory protein HTH signature.	95	1e-24
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 94.9 bits (236), Expect = 1e-24
		 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
		
		Query: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63
		            ILV +D+A IR ++   L + G+      +  +    +     DL++ D ++P  +   
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
		            +  +K+     D+PV++++A+      ++  E GA DY+ KPF   EL+  I   +   
		Sbjct: 65  LLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA-- 120
		
		Query: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEP 152
		                E       L  D      + G   
		Sbjct: 121 -----EPKRRPSKLEDDSQDGMPLVGRSA 144
		
		
	3447#JEONG1266_18075	FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signat...	30	0.022
		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin
		           signature.
		          Length = 405
		
		 Score = 29.7 bits (66), Expect = 0.022
		 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
		
		Query: 149 KQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFP 208
		           K+  ++  I ++Y   +     +   +    I     T       D +  + I    A  
		Sbjct: 135 KEAQMMNEIAEFYAAPFKKTRAINEKEAFECI-YDSRTRSA--GKD-IVSVKINIDKAKK 190
		
		Query: 209 AQNFPPADYI 218
		             N P  DYI
		Sbjct: 191 ILNLPECDYI 200
		
		
	3448#JEONG1266_18080	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	39	7e-05
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 39.4 bits (92), Expect = 7e-05
		 Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 14/199 (7%)
		
		Query: 671 QQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALH 730
		           + +    Q    +    Q R Q L+  +E     +     E      +  +V      + 
		Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192
		
		Query: 731 SQQQTLQQQDVLAAQSLQKAQAQFDTAL--------QASVFDDQQAFLAALMDEQTLTQL 782
		            Q  T Q Q      +L K +A+  T L         + V   +    ++L+ +Q +   
		Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA-- 250
		
		Query: 783 EQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQEL-AQTHQKLREN 841
		              K  +  Q  +    V +     +Q +Q   + L+     + + Q    +   KLR+ 
		Sbjct: 251 ---KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307
		
		Query: 842 TTSQGEIRQQLKQDADNRQ 860
		           T + G +  +L ++ + +Q
		Sbjct: 308 TDNIGLLTLELAKNEERQQ 326
		
		
		
		 Score = 39.4 bits (92), Expect = 7e-05
		 Identities = 25/204 (12%), Positives = 59/204 (28%), Gaps = 18/204 (8%)
		
		Query: 487 EARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEG 546
		           EA     ++   Q +  Q           ++E  +  E  +         +E + L    
		Sbjct: 133 EADTLKTQSSLLQARLEQ---TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT- 188
		
		Query: 547 AALRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQD 606
		           + ++ Q      Q  + E      R +   +  +         +     DD    L  Q 
		Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQA 248
		
		Query: 607 -------EHERQL-RLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLP 658
		                  E E +    +++    + Q+     +I+  +++ +   Q            L 
		Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF------KNEILD 302
		
		Query: 659 QEDEEESWLATRQQEAQSWQQRQN 682
		           +  +    +     E    ++RQ 
		Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQQ 326
		
		
		
		 Score = 33.3 bits (76), Expect = 0.006
		 Identities = 16/150 (10%), Positives = 42/150 (28%), Gaps = 5/150 (3%)
		
		Query: 731 SQQQTLQQQDVLAAQSLQKAQAQFDTA----LQASVFDDQQAFLAALMDEQTLTQLEQLK 786
		           +     Q   + A     + Q    +     L      D+  F     +E+ L     +K
		Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS-EEEVLRLTSLIK 192
		
		Query: 787 QNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQG 846
		           +     + Q         +  A+                  +  L      L +   ++ 
		Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH 252
		
		Query: 847 EIRQQLKQDADNRQQQQTLLQQIAQMTQQV 876
		            + +Q  +  +   + +    Q+ Q+  ++
		Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEI 282
		
		
	3449#JEONG1266_18085	TCRTETA#Tetracycline resistance protein signature.	51	3e-09
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 51.4 bits (123), Expect = 3e-09
		 Identities = 74/356 (20%), Positives = 126/356 (35%), Gaps = 35/356 (9%)
		
		Query: 5   ILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGH---MISYYALGVVVGAPIIALF 61
		           + ++AL   G+G+    IM VL  L  ++  S     H   +++ YAL     AP++   
		Sbjct: 11  LSTVALDAVGIGL----IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66
		
		Query: 62  SSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIK 121
		           S R+  + +LL  +A   +  A+   +    +L IGR+V+G         GA +    I 
		Sbjct: 67  SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD--IT 124
		
		Query: 122 PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDI 181
		            G   A   G +S      ++  P+   L   FS    F   A  N     +  F +P+ 
		Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184
		
		Query: 182 RDEAKGKLREQ----------FHFLRSPAPWLI--FAATMFGNAGVFAWFSYVKPYMMFI 229
		               +  LR +             +   A  +   F   + G      W  +        
		Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------E 238
		
		Query: 230 SGFSETAMTFIMMLVGLGM---VLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCG 286
		             F   A T  + L   G+   +   M++G ++ R    R   +         ++L F  
		Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298
		
		Query: 287 GMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAF--NLGSAVG 340
		                  I   +   G+      LQ +L +     E  G   G +A   +L S VG
		Sbjct: 299 RGWMAFPIMVLLASGGIG--MPALQAMLSRQV-DEERQGQLQGSLAALTSLTSIVG 351
		
		
	3450#JEONG1266_18090	ACETATEKNASE#Acetate kinase family signature.	30	0.015
		>ACETATEKNASE#Acetate kinase family signature.
		          Length = 400
		
		 Score = 29.8 bits (67), Expect = 0.015
		 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
		
		Query: 187 FISGTGFATDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDP- 245
		               +G ++D+R L   A          +  D  A+LAL  +  R+ K++      +   
		Sbjct: 273 VYGISGISSDFRDLEDAAF---------KNGDKRAQLALNVFAYRVKKTIGSYAAAMGGV 323
		
		Query: 246 DVIVLGGGM 254
		           DVIV   G+
		Sbjct: 324 DVIVFTAGI 332
		
		
JEONG1266_18210	JEONG1266_18260	N	Y	N	JEONG1266_18135	JEONG1266_18330
	JEONG1266_18210	2	17	-1.093587	delta-aminolevulinic acid dehydratase
	JEONG1266_18215	2	17	0.588465	taurine dioxygenase
	JEONG1266_18220	0	20	3.978759	taurine transporter subunit
	JEONG1266_18225	1	22	3.751309	taurine transporter ATP-binding subunit
	JEONG1266_18230	1	20	3.943564	taurine ABC transporter substrate-binding
	JEONG1266_18235	1	18	2.803290	DNA-binding response regulator
	JEONG1266_18240	-1	20	2.972460	MASE1 sensor histidine kinase
	JEONG1266_18245	-2	19	2.621750	regulatory protein UhpC
	JEONG1266_18250	-2	19	2.617282	hypothetical protein
	JEONG1266_18255	-2	17	2.601057	iron ABC transporter permease
	JEONG1266_18260	-2	16	1.643504	ferric transporter ATP-binding subunit
	3474#JEONG1266_18220	BINARYTOXINB#Binary toxin B family signature.	30	0.015
		>BINARYTOXINB#Binary toxin B family signature.
		          Length = 764
		
		 Score = 30.0 bits (67), Expect = 0.015
		 Identities = 19/69 (27%), Positives = 30/69 (43%)
		
		Query: 254 DIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 313
		           +   EL +  +L +   QV G  A   F      +D      E L  I+   A +IF+  
		Sbjct: 466 NQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGK 525
		
		Query: 314 ALDLAEKKI 322
		            L+L E++I
		Sbjct: 526 DLNLVERRI 534
		
		
	3479#JEONG1266_18245	HTHFIS#FIS bacterial regulatory protein HTH signature.	72	5e-17
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 72.2 bits (177), Expect = 5e-17
		 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
		
		Query: 2   IRVVLVDDHVVVRSGFAQLLSLED-DLEVIGQYSSAAQAWSALIRDDVNVAVIDIAMPDE 60
		             +++ DD   +R+   Q LS    D+ +     +AA  W  +   D ++ V D+ MPDE
		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVVMPDE 60
		
		Query: 61  NGLSLLKRLRAQKPQFRAIILSIYDAPIFVQSALDAGASGYLTKRCGPEELVQAVR 116
		           N   LL R++  +P    +++S  +  +    A + GA  YL K     EL+  + 
		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
		
		
	3480#JEONG1266_18250	PF06580#Sensor histidine kinase	49	1e-08
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 49.5 bits (118), Expect = 1e-08
		 Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 43/205 (20%)
		
		Query: 337 QSQLVKRARDPAQIQSAASQIN-------------------ELARRIHLSTRQLLR-QLR 376
		           Q ++   A++ AQ+ +  +QIN                     AR +  S  +L+R  LR
		Sbjct: 151 QWKMASMAQE-AQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209
		
		Query: 377 PPALDELTFREALLHL-----INEFAFSERGIHCQFAYQLNSTPENETVRFTLYRLLQEL 431
		                +++  + L  +     +    F +R       ++    P    V+     L+Q L
		Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDR-----LQFENQINPAIMDVQVPPM-LVQTL 263
		
		Query: 432 LNNICKHA-----EASEVTIILRQQGEVLHLEVSDNGVGIA--SGKMAGFGIQGMRERVS 484
		           + N  KH      +  ++ +   +    + LEV + G      + +  G G+Q +RER+ 
		Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQ 323
		
		Query: 485 ALGGD---LTLE-KQHGTRVIVNLP 505
		            L G    + L  KQ     +V +P
		Sbjct: 324 MLYGTEAQIKLSEKQGKVNAMVLIP 348
		
		
	3481#JEONG1266_18255	TCRTETA#Tetracycline resistance protein signature.	40	2e-05
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 39.8 bits (93), Expect = 2e-05
		 Identities = 62/399 (15%), Positives = 122/399 (30%), Gaps = 31/399 (7%)
		
		Query: 38  VNYVLPALQTDLGLD---KGDIGLLGSLFYLSYGLSKFTAGLWHDSHGQRGFMGVGLFAT 94
		           +  VLP L  DL          G+L +L+ L         G   D  G+R  + V L   
		Sbjct: 24  IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83
		
		Query: 95  GLLNVVFAFGESLTLLLVVWTLNGFFQGWGWPPCARLLTHWYSRNERGFWWGCWNMSINI 154
		            +   + A    L +L +   + G     G       +      +ER   +G  +     
		Sbjct: 84  AVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGF 142
		
		Query: 155 GGAIIPLISAFAAHWWGWQAAMLTPGIISMALGIWLTLQLKGTPQEEGLPTVGHWRHDPL 214
		           G    P++       +   A       ++    +     L  + + E  P          
		Sbjct: 143 GMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP---------- 191
		
		Query: 215 ELRQEQQSPPMGLWQMLRTTMLQNPLIWLLGVSYVLVYVIRIALNDWGNIWLTESHGVNL 274
		            LR+E  +P        R       +  L+ V +++  V ++    W    +      + 
		Sbjct: 192 -LRREALNPLAS----FRWARGMTVVAALMAVFFIMQLVGQVPAALWV---IFGEDRFHW 243
		
		Query: 275 LSANATVMLFEVGGLLGALFAGWGSDLLFSGQRAPMILLFTLGLMVSVAALWLAPVHHYA 334
		            +    + L    G+L +L     +  + +       L+  +    +   L       + 
		Sbjct: 244 DATTIGISL-AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWM 302
		
		Query: 335 LLAVCFFTVGFFVFGPQMLIGLAAVECGHK--AAAGSITGFLGLFAYLGAALAGWPLSLV 392
		              +        +  P +   L+      +     GS+     L + +G  L     +  
		Sbjct: 303 AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362
		
		Query: 393 IERYGWPGMFSLLSVAAVLMGLLLMPLLMAGITTTHARR 431
		           I    W G      +A   + LL +P L  G+ +   +R
		Sbjct: 363 ITT--WNG---WAWIAGAALYLLCLPALRRGLWSGAGQR 396
		
		
	3484#JEONG1266_18270	PF05272#Virulence-associated E family protein	32	0.004
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 32.0 bits (72), Expect = 0.004
		 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 22/90 (24%)
		
		Query: 34  MVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSI-QQRDICMVFQSYALFPH 92
		            V L G  G GK+T++  + GL        F D    TH  I   +D             
		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL------DFFSD----THFDIGTGKDSYEQIAGIVA--- 644
		
		Query: 93  MSLGENVGYGLKMLGVSRSEVKQRVKEALA 122
		             L E       M    R++  + VK   +
		Sbjct: 645 YELSE-------MTAFRRADA-EAVKAFFS 666
		
		
JEONG1266_20395	JEONG1266_20425	N	Y	N	JEONG1266_20320	JEONG1266_20515
	JEONG1266_20395	-1	16	0.221829	two-component system response regulator ArcA
	JEONG1266_20400	-1	15	0.205534	hypothetical protein
	JEONG1266_20405	-2	13	0.655785	two-component system sensor histidine kinase
	JEONG1266_20410	-2	16	1.296880	two-component system response regulator CreB
	JEONG1266_20415	-2	15	2.545631	hypothetical protein
	JEONG1266_20420	-1	15	2.422988	transcriptional regulator
	JEONG1266_20425	-1	14	2.564417	phosphoglycerate mutase
	3891#JEONG1266_20405	HTHFIS#FIS bacterial regulatory protein HTH signature.	82	4e-20
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 81.8 bits (202), Expect = 4e-20
		 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
		
		Query: 1   MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60
		           M    IL+ +D+   R  L       GYDV   ++ A + + ++  D +LV+ D+ +P +
		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60
		
		Query: 61  NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119
		           N   L   +++ + ++ ++ ++ ++  +  I   E GA DY+ KPF+  EL       L+
		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
		
		Query: 120 RT 121
		             
		Sbjct: 121 EP 122
		
		
	3893#JEONG1266_20415	PF06580#Sensor histidine kinase	31	0.012
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 30.6 bits (69), Expect = 0.012
		 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 40/182 (21%)
		
		Query: 312 LRQARLENRQEVVLTAVDVAALFR---RVSEARTVQLAE--KNITLHVM--------PTE 358
		           +R   LE+  +       ++ L R   R S AR V LA+    +  ++           +
		Sbjct: 182 IRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQ 241
		
		Query: 359 VNVAAEPALLEQALGNLL-----DNA----IDFTPKSGRITLSAEVDQEHVALKVLDTGS 409
		                 PA+++  +  +L     +N     I   P+ G+I L    D   V L+V +TGS
		Sbjct: 242 FENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS 301
		
		Query: 410 GIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSE-VARLFNGEVTLR-NVQEGGVLASL 467
		                               N ++S+G GL  V E +  L+  E  ++ + ++G V A +
		Sbjct: 302 LALK----------------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
		
		Query: 468 RL 469
		            +
		Sbjct: 346 LI 347
		
		
	3894#JEONG1266_20420	HTHFIS#FIS bacterial regulatory protein HTH signature.	87	6e-22
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 86.8 bits (215), Expect = 6e-22
		 Identities = 33/139 (23%), Positives = 60/139 (43%)
		
		Query: 1   MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDI 60
		           M   T+ + +D+  I   L   L + G+ V +      +         D+++ DV +PD 
		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60
		
		Query: 61  SGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120
		           + F+L  ++    P LPVL ++A++  +  +   E GA DY+ KPF   E+   +   L 
		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
		
		Query: 121 RVKKFSTPSPVIRIGHFEL 139
		             K+  +           L
		Sbjct: 121 EPKRRPSKLEDDSQDGMPL 139
		
		
	3897#JEONG1266_20435	VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.	29	0.014
		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.
		          Length = 1291
		
		 Score = 29.2 bits (65), Expect = 0.014
		 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
		
		Query: 145 PLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESLW 189
		           P +V  GIA G  V T+ GL  W  ++    N      D  + +W
		Sbjct: 42  PAIVG-GIATGAAVGTVSGLLGWGLKQAEEAN---KTPDKPDKVW 82
		
		
JEONG1266_20830	JEONG1266_20850	N	Y	N	JEONG1266_20750	JEONG1266_20950
	JEONG1266_20830	0	26	2.850163	gluconate permease
	JEONG1266_20835	-2	23	2.208271	fimbrial protein
	JEONG1266_20840	-1	20	2.367625	fimbrial protein
	JEONG1266_20845	-1	15	0.668789	fimbrial protein
	JEONG1266_20850	2	14	-1.393552	fimbrial protein
	3976#JEONG1266_20855	PF06580#Sensor histidine kinase	31	0.008
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 31.4 bits (71), Expect = 0.008
		 Identities = 10/49 (20%), Positives = 25/49 (51%)
		
		Query: 230 LVPLIPAIIMISTTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVAFV 278
		           +  +I  ++     I  +W V +T  W ++ FI + P+A  + + ++ +
		Sbjct: 73  MGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII 121
		
		
	3977#JEONG1266_20860	SURFACELAYER#Lactobacillus surface layer protein signature.	28	0.047
		>SURFACELAYER#Lactobacillus surface layer protein signature.
		          Length = 439
		
		 Score = 28.1 bits (62), Expect = 0.047
		 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
		
		Query: 211 SQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVS 270
		           S+N G  ++  +A+  N  FT      PA  V V L ++G    ++  +       +  +
		Sbjct: 133 SENAGKEITIGSAN-PNVTFTEKTGDQPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYN 191
		
		Query: 271 LGLTANYARTGGQVTAGNV 289
		             +      TG  VT G V
		Sbjct: 192 SNVNFYDVTTGATVTTGAV 210
		
		
	3978#JEONG1266_20865	VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.	30	0.003
		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.
		          Length = 1291
		
		 Score = 30.4 bits (68), Expect = 0.003
		 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
		
		Query: 3   WRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAG 62
		           W  R   + A LA + +TI  + VT  VN   +      +     +     +       G
		Sbjct: 258 WMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTH------IG 311
		
		Query: 63  AASAWHDVALELTNCPVG--TSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLN 120
		               W    L +   P G    +     S    +      Q ++QN       +  N+  
		Sbjct: 312 TLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQ 371
		
		Query: 121 TGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQA 158
		               +  QV D   +      V    +N  A  GTI+ 
		Sbjct: 372 KTEIQPTQVIDGPFAGGKNTVVNINRINTNA-DGTIRV 408
		
		
	3980#JEONG1266_20875	PF00577#Outer membrane usher protein FimD	1089	0.0
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score = 1089 bits (2819), Expect = 0.0
		 Identities = 869/878 (98%), Positives = 873/878 (99%)
		
		Query: 1   MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAVQAPLSSAELYFNPRFLADDPQA 60
		           MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFA QAPLSSAELYFNPRFLADDPQA
		Sbjct: 1   MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQA 60
		
		Query: 61  VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120
		           VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
		Sbjct: 61  VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN 120
		
		Query: 121 TASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180
		           TASV+GMNLLADDACVPLT+M+ DATA LDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
		Sbjct: 121 TASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP 180
		
		Query: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSK 240
		           GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSD SSGSK
		Sbjct: 181 GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSK 240
		
		Query: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300
		           NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
		Sbjct: 241 NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV 300
		
		Query: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360
		           IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
		Sbjct: 301 IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV 360
		
		Query: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420
		           PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY
		Sbjct: 361 PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRY 420
		
		Query: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480
		           RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
		Sbjct: 421 RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR 480
		
		Query: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRS 540
		           YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR+
		Sbjct: 481 YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT 540
		
		Query: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLARNVNI 600
		           STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLA NVNI
		Sbjct: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI 600
		
		Query: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660
		           PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD
		Sbjct: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660
		
		Query: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720
		           GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
		Sbjct: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL 720
		
		Query: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780
		           VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
		Sbjct: 721 VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780
		
		Query: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840
		           TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
		Sbjct: 781 TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA 840
		
		Query: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		           GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
		Sbjct: 841 GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
		
		
JEONG1266_21080	JEONG1266_21115	N	Y	N	JEONG1266_21000	JEONG1266_21205
	JEONG1266_21080	-2	19	0.789317	acetyltransferase
	JEONG1266_21085	-2	18	0.393887	RNase E inhibitor protein
	JEONG1266_21095	-2	19	-1.017639	ornithine carbamoyltransferase
	JEONG1266_21100	-1	17	-5.600000	hypothetical protein
	JEONG1266_21105	0	27	-10.207499	toxin-antitoxin biofilm protein TabA
	JEONG1266_21110	0	25	-8.181872	TetR family transcriptional regulator
	JEONG1266_21115	0	26	-7.314593	oxidoreductase
	4024#JEONG1266_21110	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	5e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 5e-04
		 Identities = 16/48 (33%), Positives = 19/48 (39%)
		
		Query: 97  PAIRGKGLAKKLALKAMEEAREMGFKRCYLETTAFLKEAIGLYEHLGF 144
		              R KG+   L  KA+E A+E  F    LET      A   Y    F
		Sbjct: 99  KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
		
		
	4027#JEONG1266_21125	TYPE4SSCAGX#Type IV secretion system CagX conjugation protein si...	32	0.005
		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein
		           signature.
		          Length = 522
		
		 Score = 32.4 bits (73), Expect = 0.005
		 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
		
		Query: 138 IIFPQPDGSTNRYERKSFERKDESSLHLITNKVLACYQR--EANKEIARLLNNHQKLNNL 195
		           +I   PD      ++K+ E++ E+       +     +R  E  K  A L N    ++N 
		Sbjct: 131 LIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNP 190
		
		Query: 196 QKLNNLQKLNNLQKLNNIQKLNNIQKLNNIQELNNSQELNNSQELNNSQ 244
		           Q L+N + L+ L K     +L+ +++L ++QE   +  L   +ELN  Q
		Sbjct: 191 QNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQ 239
		
		
	4029#JEONG1266_21135	HTHTETR#TetR bacterial regulatory protein HTH signature.	50	9e-10
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 49.6 bits (118), Expect = 9e-10
		 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
		
		Query: 5   KQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLF 64
		           ++++   +  R   +  +  A  LF Q+G  + S+ E+    G+   ++Y  F  K+ LF
		Sbjct: 3   RKTKQEAQETR---QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59
		
		Query: 65  SRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRY 104
		           S +           L    +   P       VL+E     
		Sbjct: 60  SEIWELSESN-IGELELEYQAKFP--GDPLSVLREILIHV 96
		
		
	4030#JEONG1266_21140	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	87	1e-22
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 86.6 bits (214), Expect = 1e-22
		 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
		
		Query: 6   GKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFT-----DS 60
		           GK   I G ++GIG A+ R   + GA++      + +  E++     A A        D 
		Sbjct: 8   GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66
		
		Query: 61  ADRDAVIDVV----RKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVE 116
		            D  A+ ++     R+ G +DILV  AG+   G    L+ ++ +  F +N    ++AS  
		Sbjct: 67  RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126
		
		Query: 117 AARQMP--EGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVV 174
		            ++ M     G I+ +GS N   +P   MAAYA+SK+A     + L  +     I  N+V
		Sbjct: 127 VSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185
		
		Query: 175 QPGPIDTDA--------NPANGPMRDMLHSF---MAIKRHGQPEEVAGMVAWLAGPEASF 223
		            PG  +TD         N A   ++  L +F   + +K+  +P ++A  V +L   +A  
		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245
		
		Query: 224 VTGAMHTIDG 233
		           +T     +DG
		Sbjct: 246 ITMHNLCVDG 255
		
		
JEONG1266_21735	JEONG1266_21770	N	Y	N	JEONG1266_21655	JEONG1266_21860
	JEONG1266_21735	-1	24	-3.219539	peptide permease
	JEONG1266_21740	-2	19	-3.842775	lysine--tRNA ligase
	JEONG1266_21745	-2	15	-3.867585	hypothetical protein
	JEONG1266_21750	1	13	-4.262171	hypothetical protein
	JEONG1266_21755	0	17	-4.072289	hypothetical protein
	JEONG1266_21760	0	17	-3.935914	hypothetical protein
	JEONG1266_21765	0	14	-1.985954	two-component system sensor histidine kinase
	JEONG1266_21770	0	18	-0.207844	transcriptional regulator
	4144#JEONG1266_21745	TCRTETA#Tetracycline resistance protein signature.	30	0.020
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 30.2 bits (68), Expect = 0.020
		 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 14/190 (7%)
		
		Query: 44  NHAISLFSAYA-SLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSL 102
		            H   L + YA       P+LG   +DR  G R  ++       + + ++       + L
		Sbjct: 43  AHYGILLALYALMQFACAPVLGAL-SDRF-GRRPVLLVSLAGAAVDYAIMAT-APFLWVL 99
		
		Query: 103 YLALAIIICGYGLFKSNISCLLGELYDEND-HRRDGGFSLLYAAGNIGSIAAPIACGLAA 161
		           Y+   +     G+  +  +     + D  D   R   F  + A    G +A P+  GL  
		Sbjct: 100 YIGRIV----AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG 155
		
		Query: 162 QWYGWHVGFALAGGGMFIGLLIFLSGHRHFQSTRSMDKKALTSVKF-ALPVWSWLVVMLC 220
		             +  H  F  A     +  L FL+G      +   +++ L       L  + W   M  
		Sbjct: 156 G-FSPHAPFFAAA---ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTV 211
		
		Query: 221 LAPVFFTLLL 230
		           +A +     +
		Sbjct: 212 VAALMAVFFI 221
		
		
	4148#JEONG1266_21765	SACTRNSFRASE#Streptothricin acetyltransferase signature.	26	0.012
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 26.4 bits (58), Expect = 0.012
		 Identities = 9/28 (32%), Positives = 16/28 (57%)
		
		Query: 32  LAIIEHTDVDESLKGQGIGKQLVAKVVE 59
		            A+IE   V +  + +G+G  L+ K +E
		Sbjct: 89  YALIEDIAVAKDYRKKGVGTALLHKAIE 116
		
		
	4150#JEONG1266_21775	PF06580#Sensor histidine kinase	41	7e-06
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 41.0 bits (96), Expect = 7e-06
		 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
		
		Query: 442 LIENALE-ALGP-EPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSE 499
		           L+EN ++  +     GG+I +     +G +  EV + G     +                
		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------TKES 310
		
		Query: 500 RGVGLALVKQQVENLGG---SIAVESEPGIFTQFFVQIP 535
		            G GL  V+++++ L G    I +  + G      V IP
		Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
		
		
	4151#JEONG1266_21780	HTHFIS#FIS bacterial regulatory protein HTH signature.	70	4e-16
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 70.2 bits (172), Expect = 4e-16
		 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
		
		Query: 4   VLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQKEN 63
		           +L+ DDDA +  +  + +++  G+      S        I  +    DL++ D+ M  EN
		Sbjct: 6   ILVADDDAAIRTVLNQALSRA-GYDVR-ITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61
		
		Query: 64  GLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASR 112
		             DLLP +  AR    V+V+S+     T   +   G  DYL KPF  + 
		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE 110
		
		
JEONG1266_21920	JEONG1266_21985	N	Y	N	JEONG1266_21845	JEONG1266_22040
	JEONG1266_21920	1	41	8.857579	phosphonate C-P lyase system protein PhnL
	JEONG1266_21925	0	39	9.170811	phosphonate metabolism protein PhnM
	JEONG1266_21930	1	37	8.615149	phosphonate metabolism
	JEONG1266_21935	2	31	7.407219	aminoalkylphosphonic acid N-acetyltransferase
	JEONG1266_21940	2	27	6.413281	phosphonate metabolism protein PhnP
	JEONG1266_21945	1	27	5.989898	hypothetical protein
	JEONG1266_21950	1	27	5.743210	hybrid sensor histidine kinase/response
	JEONG1266_21955	1	24	4.894633	D-xylose ABC transporter ATP-binding protein
	JEONG1266_21960	1	23	4.776339	ribose ABC transporter permease
	JEONG1266_21965	0	23	4.561288	transcriptional regulator
	JEONG1266_21970	0	21	4.154448	D-lyxose/D-mannose family sugar isomerase
	JEONG1266_21975	-1	18	3.039474	hypothetical protein
	JEONG1266_21980	0	16	2.429940	sugar kinase
	JEONG1266_21985	-1	16	2.843477	DNA-binding response regulator
	4180#JEONG1266_21930	PF05272#Virulence-associated E family protein	29	0.015
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 29.3 bits (65), Expect = 0.015
		 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
		
		Query: 36  CVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEI------RK 89
		            VVL G  G GKSTL+ +L       +    I  G +  + +        E+      R+
		Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIV--AYELSEMTAFRR 655
		
		Query: 90  TTVGWVSQFL 99
		                V  F 
		Sbjct: 656 ADAEAVKAFF 665
		
		
	4183#JEONG1266_21945	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	3e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 32.2 bits (73), Expect = 3e-04
		 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
		
		Query: 47  HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAG 106
		            L  L+   +G I +   +     N    I+++ V    R   VG+ LL  A E A++  
		Sbjct: 68  FLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122
		
		Query: 107 AEMTELSTNVKRHDAHRFYLREGY 130
		                L T      A  FY +  +
		Sbjct: 123 FCGLMLETQDINISACHFYAKHHF 146
		
		
	4185#JEONG1266_21955	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	26	0.034
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 25.9 bits (57), Expect = 0.034
		 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
		
		Query: 11  TLLTLTTVPAQADIIDDTIGNIQ--------QAINDASNPDRGRDYEDSRDDGWQREVSD 62
		            LL LT + A+AD +      +Q        Q ++ +   ++  + +   +  +Q    +
		Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182
		
		Query: 63  DRRRQYDDRRRQFEDRRRQLDDRQHQLNQERRQLEDEERRMEDEYGQ 109
		           +  R     + QF   + Q   ++  L+++R +      R+      
		Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229
		
		
	4186#JEONG1266_21960	HTHFIS#FIS bacterial regulatory protein HTH signature.	58	6e-11
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 58.3 bits (141), Expect = 6e-11
		 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
		
		Query: 643 VLVLEDEAAVRQTICEQLHLLGYLTLEASSGEQALDLLAASAEIDIFISDLMLPGGMSGA 702
		           +LV +D+AA+R  + + L   GY     S+       +AA  + D+ ++D+++P   +  
		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP-DENAF 63
		
		Query: 703 EVVNAARKLYPHLTLLLISGQ 723
		           +++   +K  P L +L++S Q
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQ 84
		
		
	4188#JEONG1266_21970	PF00577#Outer membrane usher protein FimD	28	0.047
		>PF00577#Outer membrane usher protein FimD
		          Length = 878
		
		 Score = 28.3 bits (63), Expect = 0.047
		 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
		
		Query: 219 FVYGMSGLLSGLGGIMSASRLYSANGNLGMG-YELDAIAAVILGGTSFVGGIGTITGTLV 277
		            ++G+    +  GG   A R  + N  +G     L A++  +    S +       G  V
		Sbjct: 400 LLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSV 459
		
		Query: 278 GALIIATLNNGMT 290
		             L   +LN   T
		Sbjct: 460 RFLYNKSLNESGT 472
		
		
	4189#JEONG1266_21975	SUBTILISIN#Subtilisin serine protease family (S8) signature.	29	0.027
		>SUBTILISIN#Subtilisin serine protease family (S8) signature.
		          Length = 326
		
		 Score = 28.7 bits (64), Expect = 0.027
		 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
		
		Query: 55  KLAGDNVKVTLVSSGYDLGQQVSQIDNFIAANVDMIIL---NAADSKGIGPAVKRAKDAG 111
		            L    +KV            +  I   I   VD+I +      D   +  AVK+A  + 
		Sbjct: 111 DLLI--IKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQ 168
		
		Query: 112 IVVVA 116
		           I+V+ 
		Sbjct: 169 ILVMC 173
		
		
	4193#JEONG1266_21995	HTHFIS#FIS bacterial regulatory protein HTH signature.	91	2e-23
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 91.4 bits (227), Expect = 2e-23
		 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
		
		Query: 2   KPVVLVVDDDTAICALLQDVLSEHVFTVSVCHTGQEAILRIEGDPDIALVVLDMMLPDTN 61
		              +LV DDD AI  +L   LS   + V +          I       LVV D+++PD N
		Sbjct: 3   GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDEN 61
		
		Query: 62  GLRVLQQIQKLRPTLPVVMLTGMGSESDVVVGLEMGADDYICKPFTPRVVVARLKAVLRR 121
		              +L +I+K RP LPV++++   +    +   E GA DY+ KPF    ++  +   L  
		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
		
		
JEONG1266_22335	JEONG1266_22360	N	Y	N	JEONG1266_22255	JEONG1266_22455
	JEONG1266_22335	-1	23	1.388988	maltose/maltodextrin transporter ATP-binding
	JEONG1266_22340	-2	19	0.748734	sugar ABC transporter
	JEONG1266_22345	-1	18	-0.008481	maltose ABC transporter substrate-binding
	JEONG1266_22350	-1	19	0.173080	maltose transporter
	JEONG1266_22355	-1	18	0.225208	maltose transporter permease
	JEONG1266_22360	-2	14	0.873498	D-xylose transporter XylE
	4261#JEONG1266_22340	PF05272#Virulence-associated E family protein	35	6e-04
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 34.7 bits (79), Expect = 6e-04
		 Identities = 13/35 (37%), Positives = 18/35 (51%)
		
		Query: 32  VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKR 66
		           VV  G  G GKSTL+  + GL+  +     IG  +
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
		
		
	4263#JEONG1266_22350	MALTOSEBP#Maltose binding protein signature.	756	0.0
		>MALTOSEBP#Maltose binding protein signature.
		          Length = 396
		
		 Score =  756 bits (1953), Expect = 0.0
		 Identities = 396/396 (100%), Positives = 396/396 (100%)
		
		Query: 1   MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK 60
		           MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK
		Sbjct: 1   MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIK 60
		
		Query: 61  VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW 120
		           VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW
		Sbjct: 61  VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTW 120
		
		Query: 121 DAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP 180
		           DAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP
		Sbjct: 121 DAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP 180
		
		Query: 181 YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAE 240
		           YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAE
		Sbjct: 181 YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAE 240
		
		Query: 241 AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE 300
		           AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE
		Sbjct: 241 AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE 300
		
		Query: 301 LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIP 360
		           LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIP
		Sbjct: 301 LAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIP 360
		
		Query: 361 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK 396
		           QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK
		Sbjct: 361 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK 396
		
		
	4264#JEONG1266_22355	FLGHOOKAP1#Flagellar hook-associated protein signature.	31	0.012
		>FLGHOOKAP1#Flagellar hook-associated protein signature.
		          Length = 546
		
		 Score = 31.1 bits (70), Expect = 0.012
		 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
		
		Query: 128 GDEWQLALSDGETGKNYLSDAFKFGREQKLQLKETTAQPEGERANLRVITQNRQALSDIT 187
		            ++WQ+      T      DA        L+L  T      +   L+ +     A+ ++ 
		Sbjct: 367 NNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPV---SDAIVNMD 423
		
		Query: 188 AILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQ--------IGFYQS 239
		            ++ D  K+ M+S              GD    N Q+ +  + N++           Y S
		Sbjct: 424 VLITDEAKIAMAS----------EEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYAS 473
		
		Query: 240 ITAD 243
		           + +D
		Sbjct: 474 LVSD 477
		
		
	4266#JEONG1266_22365	TCRTETA#Tetracycline resistance protein signature.	36	4e-04
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 35.6 bits (82), Expect = 4e-04
		 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
		
		Query: 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMT--- 335
		           +I ++ ++    VGI +++   P + + L  S D+     I++ +  L     A +    
		Sbjct: 7   LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66
		
		Query: 336 VDKFGRKPLQIIGALGMAIGMFSLGTA 362
		            D+FGR+P+ ++   G A+    + TA
		Sbjct: 67  SDRFGRRPVLLVSLAGAAVDYAIMATA 93
		
		
JEONG1266_23305	JEONG1266_23355	N	Y	N	JEONG1266_23230	JEONG1266_23450
	JEONG1266_23305	0	14	-4.394690	hypothetical protein
	JEONG1266_23310	1	15	-3.924914	hypothetical protein
	JEONG1266_23315	1	21	-1.973231	GntR family transcriptional regulator
	JEONG1266_23320	1	22	-0.274245	GTP-binding protein TypA
	JEONG1266_23325	1	24	2.063058	transporter
	JEONG1266_23330	1	27	2.559028	type I glutamate--ammonia ligase
	JEONG1266_28240	-1	18	2.547614	two-component system sensor histidine kinase
	JEONG1266_23340	0	19	2.724064	nitrogen regulation protein NR(I)
	JEONG1266_23345	0	17	2.655325	hypothetical protein
	JEONG1266_23350	1	15	1.715886	oxygen-independent coproporphyrinogen III
	JEONG1266_23355	1	14	0.005987	GTPase-activating protein
	4442#JEONG1266_23315	TCRTETB#Tetracycline resistance protein TetB signature.	30	0.024
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 29.8 bits (67), Expect = 0.024
		 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 15/161 (9%)
		
		Query: 227 NVFFVYAVYCGLTFFIPFLKNIYLLP----------VALVGAYGIINQYCLKMIGGPIGG 276
		           N+ F+  V CG   F      + ++P           A +G+  I       +I G IGG
		Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314
		
		Query: 277 MISDKILKSPSKYLCYTFIISTAALVLLIMLPHESMPVYLGMACTLGFGAIVFTQRAVFF 336
		           ++ D+  + P   L       + + +    L  E+   ++ +      G + FT+     
		Sbjct: 315 ILVDR--RGPLYVLNIGVTFLSVSFLTASFLL-ETTSWFMTIIIVFVLGGLSFTK--TVI 369
		
		Query: 337 APIGEAKIAENKTGAAMALGSFIGYAPAMFCFSLYGYILDL 377
		           + I  + + + + GA M+L +F  +       ++ G +L +
		Sbjct: 370 STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
		
		
	4445#JEONG1266_23330	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	180	4e-51
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score =  180 bits (458), Expect = 4e-51
		 Identities = 97/445 (21%), Positives = 170/445 (38%), Gaps = 81/445 (18%)
		
		Query: 4   KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAKNT 61
		           K+ NI ++AHVD GKTTL + LL  SG         +     D+  LE++RGITI    T
		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61
		
		Query: 62  AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGL 121
		           + +W + ++NI+DTPGH DF  EV R +S++D  +L++ A DG   QTR +       G+
		Sbjct: 62  SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121
		
		Query: 122 KPIVVINKVDRPGARPDWVVDQVFD-------------LFVNLDATDEQLD--------- 159
		             I  INK+D+ G     V   + +             L+ N+  T+             
		Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181
		
		Query: 160 --------------------------------FPIVYASALNGIAGLDHEDMAEDMTPLY 187
		                                           FP+ + SA N I G+D+         L 
		Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI-GIDN---------LI 231
		
		Query: 188 QAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTR 247
		           + I +   +           ++ +++Y+     +   R+  G +     V I + E    
		Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-- 289
		
		Query: 248 NAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTV 307
		             K+ ++   +  E  + D A +G+IV +     L ++  + DT+ +     +    P +
		Sbjct: 290 --KITEMYTSINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLL 346
		
		Query: 308 SMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLS 367
		                 +           +      D L         LR           +S  G++ + 
		Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKVQME 397
		
		Query: 368 VLIENMRRE-GFELAVSRPKVIFRE 391
		           V    ++ +   E+ +  P VI+ E
		Sbjct: 398 VTCALLQEKYHVEIEIKEPTVIYME 422
		
		
		
		 Score = 32.5 bits (74), Expect = 0.005
		 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
		
		Query: 398 EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMT 457
		           EPY +  +   +++         +   ++ +        V L   IP+R +  +RS+   
		Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595
		
		Query: 458 MTSGTGLLYSTFSHY 472
		            T+G  +  +    Y
		Sbjct: 596 FTNGRSVCLTELKGY 610
		
		
	4448#JEONG1266_23345	PF06580#Sensor histidine kinase	28	0.042
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 28.3 bits (63), Expect = 0.042
		 Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 41/190 (21%)
		
		Query: 171 IIEQADRLRNLVDRL---LGPQLPGTRVTE-SIHKVAERV---VTLVSMELPDNVRLIRD 223
		           I+E   + R ++  L   +   L  +   + S+      V   + L S++  D ++    
		Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245
		
		Query: 224 YDPSLPELAHDPDQIEQVLLN-IVRNALQ---ALGPEGGEIILRTRTAFQLTLHGERYRL 279
		            +P++ ++     Q+  +L+  +V N ++   A  P+GG+I+L+                
		Sbjct: 246 INPAIMDV-----QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGT------KDNGTVT- 293
		
		Query: 280 AARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGK---IEFTSWP 336
		              ++VE+ G     + ++             TG GL   R  +    G    I+ +   
		Sbjct: 294 ---LEVENTGSLALKNTKE------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338
		
		Query: 337 GHTEFSVYLP 346
		           G     V +P
		Sbjct: 339 GKVNAMVLIP 348
		
		
	4449#JEONG1266_23350	HTHFIS#FIS bacterial regulatory protein HTH signature.	602	0.0
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score =  602 bits (1553), Expect = 0.0
		 Identities = 206/478 (43%), Positives = 300/478 (62%), Gaps = 11/478 (2%)
		
		Query: 1   MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60
		           M    + V DDD++IR VL +AL+ AG       N A +   +A+   D++++D+ MP  
		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60
		
		Query: 61  DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
		           +   LL +IK+  P LPV++M+A +    A+ A ++GA+DYLPKPFD+ E + ++ RA++
		Sbjct: 61  NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
		
		Query: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180
		             + +              ++G + AMQ+++R++ RL ++ ++++I GESGTGKELVA A
		Sbjct: 121 EPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179
		
		Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240
		           LH +  R   PF+A+NMAAIP+DLIESELFGHEKGAFTGA T   GRFEQA+GGTLFLDE
		Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239
		
		Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300
		           IGDMP+D QTRLLRVL  G++  VGG  P++ DVRI+AAT+++L+Q + +G FREDL++R
		Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299
		
		Query: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360
		           LNV+ + LPPLR+R EDIP L RHF+Q A +E G++ K    E    +    WPGNVR+L
		Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358
		
		Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRS---- 416
		           EN  R LT +     +  + +  EL          +    S +  ++Q  +  +R     
		Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418
		
		Query: 417 -----GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
		                    L      E+E  L+  AL  T+G++ +AA LLG  RNTL +K++ELG+ 
		Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
		
		
	4452#JEONG1266_23365	SECA#SecA protein signature.	30	0.004
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 30.2 bits (68), Expect = 0.004
		 Identities = 11/71 (15%), Positives = 29/71 (40%)
		
		Query: 13  AKARRKTREELNQEARDRKRQKKRRGHAPGSRAAGGNNTSGSKGQNAPKDPRIGSKTPIP 72
		           +K + +  EE+ +  + R+ + +R            ++ + +       + ++G   P P
		Sbjct: 827 SKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCP 886
		
		Query: 73  LGVTEKVTKQH 83
		            G  +K  + H
		Sbjct: 887 CGSGKKYKQCH 897
		
		
JEONG1266_24410	JEONG1266_24455	N	Y	N	JEONG1266_24335	JEONG1266_24530
	JEONG1266_24410	-2	15	2.402478	DNA-binding response regulator
	JEONG1266_24415	-2	15	2.000007	two-component system sensor histidine kinase
	JEONG1266_24420	-1	14	0.740914	regulatory protein UhpC
	JEONG1266_24425	-1	15	-0.612631	antiporter
	JEONG1266_24430	-1	19	-1.767644	adenine deaminase
	JEONG1266_24435	0	22	-3.024142	hypothetical protein
	JEONG1266_24440	2	21	-2.874024	transcriptional regulator
	JEONG1266_24445	2	21	-3.783520	addiction module toxin RelE
	JEONG1266_24450	0	20	-3.760431	hypothetical protein
	JEONG1266_24455	-1	20	-2.810034	ribonucleoside transporter
	4646#JEONG1266_24410	HTHFIS#FIS bacterial regulatory protein HTH signature.	61	2e-13
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 61.4 bits (149), Expect = 2e-13
		 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
		
		Query: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61
		            T+ + DD   +R+   Q L       V     +       +      + + D+ MPD +
		Sbjct: 4   ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61
		
		Query: 62  GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118
		             +LL ++ K    +  +++S  ++     +A   GA  +L K     ELI  +      
		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR---- 117
		
		Query: 119 GCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQG---MAVKEIAAELGLSPKTV 169
		                   A+     R   L    +     + +      +  + A L  +  T+
		Sbjct: 118 --------ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
		
		
	4647#JEONG1266_24415	PF06580#Sensor histidine kinase	38	7e-05
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 37.9 bits (88), Expect = 7e-05
		 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
		
		Query: 365 LRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEWRIEESALSENQRVTLFRVCQEGLNN 424
		           LR      ++L   +  +   ++L        L++  + +    + +V    + Q  + N
		Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM-LVQTLVEN 266
		
		Query: 425 IVKHA-----DASAVTLQGWLQDERLMLVIEDDGSGLPPGSGQ-QGFGLTGMRERVTALG 478
		            +KH          + L+G   +  + L +E+ GS     + +  G GL  +RER+  L 
		Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLY 326
		
		Query: 479 G---TLTISCLHG-TRVSVSLP 496
		           G    + +S   G     V +P
		Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348
		
		
	4648#JEONG1266_24420	TCRTETB#Tetracycline resistance protein TetB signature.	41	8e-06
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 40.6 bits (95), Expect = 8e-06
		 Identities = 65/408 (15%), Positives = 137/408 (33%), Gaps = 60/408 (14%)
		
		Query: 29  RHILLTIWLGYALFY--FTRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSG 86
		           RH  + IWL    F+        N ++P+I  +     +    + T F +T+ +   V G
		Sbjct: 11  RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70
		
		Query: 87  IVSDRSNARYFMGIGLIATGIINILFGFSTSLWAFAVLWVLNAFFQGWGS---PVCARLL 143
		            +SD+   +  +  G+I     +++     S   F  L ++  F QG G+   P    ++
		Sbjct: 71  KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVV 127
		
		Query: 144 TAWY-SRTERGGWWALWNTAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLC 202
		            A Y  +  RG  + L  +   +G  + P +    A +  W    ++   M  ++ +   
		Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPF- 184
		
		Query: 203 WRLRDRPQALGLPAVGEWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLV 262
		                    + L           +I     G  L    I+   +    Y        VL 
		Sbjct: 185 --------LMKLLKKEVRIKGHFDIK----GIILMSVGIVFFMLFTTSYSISFLIVSVLS 232
		
		Query: 263 YVV-----RAAINDWGNLYMSETLGVDLVTANTAVTMFELGGFI-----------GALVA 306
		           +++     R   + + +  + + +   +      +    + GF+               A
		Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292
		
		Query: 307 GWGSDKLFNGNRGPMNLIFAAGILL-SVGSLWLMPFASYVMQATCFFTIGFFVFGPQMLI 365
		             GS  +F G    +   +  GIL+   G L+++      + +  F T  F +      +
		Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL-SVSFLTASFLLETTSWFM 351
		
		Query: 366 ---------GMAAAECS---------HKEAAGAATGFVGLFAYLGASL 395
		                    G++  +            ++ AGA    +   ++L    
		Sbjct: 352 TIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
		
		
	4649#JEONG1266_24425	TCRTETB#Tetracycline resistance protein TetB signature.	34	0.001
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 34.1 bits (78), Expect = 0.001
		 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 17/168 (10%)
		
		Query: 49  FNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAIC 108
		            N++  D+ + +         +   F +T+ +G  +    +D    K+ L F +I++  C
		Sbjct: 33  LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN--C 90
		
		Query: 109 MLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTI----TKWTPRRKRGTFLGFW 164
		                  +G    SL +M      + F Q  G +   + +     ++ P+  RG   G  
		Sbjct: 91  FGSVIGFVGHSFFSLLIM------ARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144
		
		Query: 165 NISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRY 212
		                +G      +    A+Y+   +   + + P  +  I+    L  
		Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSY---LLLIP--MITIITVPFLMK 187
		
		
	4650#JEONG1266_24430	UREASE#Urea amidohydrolase (urease) protein signature.	38	9e-05
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 38.2 bits (89), Expect = 9e-05
		 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
		
		Query: 22  AVSRGDAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVG----------AEYTDAPA 71
		            V+R     D +I N  ILD  + G +   I +K   IA +G                P 
		Sbjct: 60  QVTREGGAVDTVITNALILD--HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPG 117
		
		Query: 72  LQRIDAHGATAVPGFIDAHLHIESSMMTPVTFETATLPRGLTTVI 116
		            + I   G     G +D+H+H     + P   E A L  GLT ++
		Sbjct: 118 TEVIAGEGKIVTAGGMDSHIH----FICPQQIEEA-LMSGLTCML 157
		
		
	4655#JEONG1266_24460	TCRTETB#Tetracycline resistance protein TetB signature.	34	8e-04
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 34.1 bits (78), Expect = 8e-04
		 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 18/163 (11%)
		
		Query: 43  LTPMAQDLGISEG-----VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97
		           L  +A D                +T +   A++  L        +D+  +  L    + +
		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL--------SDQLGIKRLLLFGIII 88
		
		Query: 98  SCL--LVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV 153
		           +C   ++ F     FSLL++ R   G     F A+   +  R +P     KA  +I   V
		Sbjct: 89  NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIV 148
		
		Query: 154 SIALVIAAPLGCFLGELIGWRNVFNAAAAMGVLCIFWIIKSLP 196
		           ++   +   +G  +   I W  +        ++ + +++K L 
		Sbjct: 149 AMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLK 190
		
		
JEONG1266_24520	JEONG1266_24570	N	Y	N	JEONG1266_24445	JEONG1266_24640
	JEONG1266_24520	9	51	-18.667567	EscR/YscR/HrcR family type III secretion system
	JEONG1266_24525	7	51	-18.997591	EscS/YscS/HrcS family type III secretion system
	JEONG1266_24530	7	50	-18.246511	EscT/YscT/HrcT family type III secretion system
	JEONG1266_24535	7	50	-17.829939	EscU/YscU/HrcU family type III secretion system
	JEONG1266_24540	7	50	-17.934327	lytic transglycosylase
	JEONG1266_24545	5	47	-16.554021	negative regulator GrlR
	JEONG1266_24550	4	47	-16.161079	LEE type III secretion system transcriptional
	JEONG1266_24555	4	44	-15.119434	CesD/SycD/LcrH family type III secretion system
	JEONG1266_24560	2	44	-14.233277	EscC/YscC/HrcC family type III secretion system
	JEONG1266_24565	3	44	-13.247026	SepD
	JEONG1266_24570	2	44	-13.718077	EscJ/YscJ/HrcJ family type III secretion inner
	4668#JEONG1266_24530	TYPE3IMPPROT#Type III secretion system inner membrane P protein ...	224	8e-77
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein
		           family signature.
		          Length = 224
		
		 Score =  224 bits (573), Expect = 8e-77
		 Identities = 89/212 (41%), Positives = 136/212 (64%), Gaps = 9/212 (4%)
		
		Query: 8   IFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIM 67
		           I LI +    +LLP  +  GT F+K SIV  +++NALG+QQ+P NM L  V+L+L+MF+M
		Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64
		
		Query: 68  SPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLG 127
		            PI+         E + + D     K  ++ L  YR +L K ++++ V+FFE A  K+  
		Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124
		
		Query: 128 NETI---------LKKDSLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 178
		            E           ++K S+F LLPA+ + ++++AFKIGF LYLPF+ +DL++S++LLALG
		Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184
		
		Query: 179 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 210
		           MMM+SPVTIS P K++LF+ + GW  L + L+
		Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLI 216
		
		
	4669#JEONG1266_24535	TYPE3IMQPROT#Type III secretion system inner membrane Q protein ...	69	2e-19
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein
		          family signature.
		          Length = 86
		
		 Score = 69.0 bits (169), Expect = 2e-19
		 Identities = 25/78 (32%), Positives = 45/78 (57%)
		
		Query: 7  VQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFATLALTY 66
		          V    +  +++ ILS    I A++IG+++ L Q +TQLQ+QTLPF +K++ V   L L  
		Sbjct: 5  VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64
		
		Query: 67 HWMGTTIINFSSIIFEMI 84
		           W G  ++++   +  + 
		Sbjct: 65 GWYGEVLLSYGRQVIFLA 82
		
		
	4670#JEONG1266_24540	TYPE3IMRPROT#Type III secretion system inner membrane R protein ...	155	1e-48
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein
		           family signature.
		          Length = 261
		
		 Score =  155 bits (394), Expect = 1e-48
		 Identities = 46/230 (20%), Positives = 102/230 (44%), Gaps = 4/230 (1%)
		
		Query: 11  SFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKLPSGIFQLTG 70
		            F+ +LR L +    PI S   +     R  + +A  +   +     +  +P   F    
		Sbjct: 16  YFWPLLRVLALISTAPILSERSVPK---RVKLGLAMMITFAIAPSLPANDVPVFSFFALW 72
		
		Query: 71  IALKEISIGFFIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGVILYQF 130
		           +A+++I IG  +G +    F A+  AG+II    G + ++  +P+   +  +   I+   
		Sbjct: 73  LAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDML 132
		
		Query: 131 ISVIFVIHGGIQSILDKLYLSYEILPLQADIAFNRALIDFLFSLWDSFIKLMLSFSVPMI 190
		             ++F+   G   ++  L  ++  LP+  +   + A +    +    F+   L  ++P+I
		Sbjct: 133 ALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFL-NGLMLALPLI 191
		
		Query: 191 IGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT 240
		             +   ++  G LN+ APQL++F +  P+   + I ++  ++ +   F  
		Sbjct: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCE 241
		
		
	4671#JEONG1266_24545	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	376	e-132
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score =  376 bits (967), Expect = e-132
		 Identities = 123/339 (36%), Positives = 195/339 (57%), Gaps = 4/339 (1%)
		
		Query: 2   SEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMS--FFVDIVGLVNTT 59
		            EKTE+PTPKK+RD +KKG V KS+EV++    LI+     L G+S  +F     L+   
		Sbjct: 3   GEKTEQPTPKKIRDARKKGQVAKSKEVVSTA--LIVALSAMLMGLSDYYFEHFSKLMLIP 60
		
		Query: 60  IDSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQ 119
		            +    PF  A+  ++  VL  F     P+  +  +  + + V Q GF+ + E IKP  +
		Sbjct: 61  AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120
		
		Query: 120 KISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVV 179
		           KI+     K IFS+KS+ E LKS+ K+V++ ++ + +                     ++
		Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180
		
		Query: 180 AFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRR 239
		              +  L      G+++ S+ D+ F+ ++ +K++KMSKDE+KRE K+ +G+PEIK +RR+
		Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240
		
		Query: 240 LHSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAE 299
		            H EIQS ++  N+K+S+V+V NPTHIAI + YK GETPLPLV     DA+   + K+AE
		Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300
		
		Query: 300 LYDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIR 338
		              +P+++ IPLAR LY +     YI  +  E  A+++R
		Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLR 339
		
		
	4672#JEONG1266_24550	OMPTIN#Omptin serine protease signature.	26	0.048
		>OMPTIN#Omptin serine protease signature.
		          Length = 317
		
		 Score = 26.5 bits (58), Expect = 0.048
		 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
		
		Query: 115 AYNAGYFNTPNAVELRRQYAMKIYKTYNKLKNNEQIID 152
		           A NAGY+ TPNA    + Y    +      K N  + D
		Sbjct: 254 AVNAGYYVTPNA----KVYVEGAWNRVTNKKGNTSLYD 287
		
		
	4675#JEONG1266_24565	SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD cha...	139	4e-45
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD
		           chaperone signature.
		          Length = 168
		
		 Score =  139 bits (352), Expect = 4e-45
		 Identities = 33/142 (23%), Positives = 63/142 (44%)
		
		Query: 6   SSLEDIYDFYQDGGTLASLTNLTQQDLNDLHSYAYTAYQSGDVITARNLFHLLTYLEHWN 65
		                +  F + GGT+A L  ++   L  L+S A+  YQSG    A  +F  L  L+H++
		Sbjct: 10  EYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69
		
		Query: 66  YDYTLSLGLCHQRLSNHEDAQLCFARCATLVMQDPRASYYSGISYLLVGNKKMAKKAFKA 125
		             + L LG C Q +  ++ A   ++  A + +++PR  +++    L  G    A+     
		Sbjct: 70  SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129
		
		Query: 126 CLMWCNEKEKYTTYKENIKKLL 147
		                 +K ++      +  +L
		Sbjct: 130 AQELIADKTEFKELSTRVSSML 151
		
		
	4676#JEONG1266_24570	TYPE3OMGPROT#Type III secretion system outer membrane G protein ...	559	0.0
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein
		           family signature.
		          Length = 607
		
		 Score =  559 bits (1441), Expect = 0.0
		 Identities = 153/494 (30%), Positives = 262/494 (53%), Gaps = 24/494 (4%)
		
		Query: 30  KSEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHL 89
		              Y  + K   +R +L DF ANY   V +S  +ND  SG+ +++ P   L+ ++ LY+L
		Sbjct: 33  PIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNL 92
		
		Query: 90  TWYYDENILYIYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEV 149
		            WYYD N+LYI+K +E++  +I     +   L + L     + +     R   +   + V
		Sbjct: 93  VWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQR-SGIWEPRFGWRPDASNRLVYV 151
		
		Query: 150 RGVPECIKYITSLSESLDKEAQSKAKNKD--VVKVFKLNYASATDITYKYRDQNVVVPGV 207
		            G P  ++ +   + +L+++ Q +++      +++F L YASA+D T  YRD  V  PGV
		Sbjct: 152 SGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGV 211
		
		Query: 208 VSILKTMASNGSLP--STGKGAVERSGNLFDNSVTISADPRLNAVVVKDREITMDIYQQL 265
		            +IL+ + S+ ++   +     + ++         + ADP LNA++V+D    M +YQ+L
		Sbjct: 212 ATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPMYQRL 271
		
		Query: 266 ISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIA--------FNSSTAQA 317
		           I  LD    +IE+++SI+D++A+ L +LGV+W   +  G              N ++  A
		Sbjct: 272 IHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIASNGA 331
		
		Query: 318 NISSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSGEKVA 377
		             S          + RVN L+    A+++S+P+++T  N QA++D + T+Y KV+G++VA
		Sbjct: 332 LGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVA 391
		
		Query: 378 SLESITSGTLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPE 437
		            L+ IT GT+LR+TPR+L     S        + L L I+DGNQ  N S  +     +P 
		Sbjct: 392 ELKGITYGTMLRMTPRVLTQGDKS-------EISLNLHIEDGNQKPNSSGIE----GIPT 440
		
		Query: 438 VQNSEMTTEATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVR 497
		           +  + + T A +  G+SL++GG  +D+ S +   +PLL DIP IG+LF    +     VR
		Sbjct: 441 ISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVR 500
		
		Query: 498 LFLIKATPIKSASS 511
		           LF+I+   I    +
		Sbjct: 501 LFIIEPRIIDEGIA 514
		
		
	4678#JEONG1266_24580	FLGMRINGFLIF#Flagellar M-ring protein signature.	56	1e-11
		>FLGMRINGFLIF#Flagellar M-ring protein signature.
		          Length = 559
		
		 Score = 55.7 bits (134), Expect = 1e-11
		 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
		
		Query: 22  EQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKK 81
		             L++ L++++   + A L     N+           + V  +        L   G PK 
		Sbjct: 51  RTLFSNLSDQDGGAIVAQLTQM--NIPYRFANGSG-AIEVPADKVHELRLRLAQQGLPKG 107
		
		Query: 82  KFADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN----- 136
		                E +    +   S   E        E ++ R +  +  V    V L +        
		Sbjct: 108 GAVGFE-LLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVR 166
		
		Query: 137 ESQPSSAAVLVISSPEVNLAPSVIQ-IKNLVKNSVDDLKLENISVV 181
		           E +  SA+V V   P   L    I  + +LV ++V  L   N+++V
		Sbjct: 167 EQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLV 212
		
		
JEONG1266_24620	JEONG1266_24660	N	Y	N	JEONG1266_24545	JEONG1266_24740
	JEONG1266_24620	5	44	-9.282442	molecular chaperone CesF
	JEONG1266_24625	3	39	-8.447425	T3SS effector protein Map
	JEONG1266_24630	2	36	-8.929491	translocated intimin receptor Tir
	JEONG1266_24635	3	37	-9.468035	Tir chaperone
	JEONG1266_24640	3	39	-9.738513	Intimin
	JEONG1266_24645	2	37	-10.583851	EscD/YscD/HrpQ family type III secretion system
	JEONG1266_24650	2	37	-9.413601	SepL/TyeA/HrpJ family type III secretion system
	JEONG1266_24655	3	38	-9.894504	secretion protein EspA
	JEONG1266_24660	4	41	-9.504691	secretion protein EspD
	4688#JEONG1266_24630	PF06704#DspF/AvrF protein	36	6e-06
		>PF06704#DspF/AvrF protein
		          Length = 129
		
		 Score = 36.4 bits (84), Expect = 6e-06
		 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
		
		Query: 3   EKFRTDLAHTFGIALEEQTDVLSFHDNDGHEW-ILECASQSEILFFYCYLLNSESIQINS 61
		            +    L    G +L  Q  V + +D+  +E  ++E    SE++ F+C +  S     + 
		Sbjct: 9   SRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHSEMVIFHCRVGRSPDRAADL 68
		
		Query: 62  ILEMNSNRELLGMF--FLSLKDDNILLNIAFPADKIDITEFANLMENGYLLKNEIIRSL 118
		              ++ N ++  M   + ++   ++ L        +D  +F +    G++++    R+L
		Sbjct: 69  QKLLSLNFDVARMHGSWFAVDQGDVRLCAQRELAVLDEAQFCDTA-RGFIVQAREARAL 126
		
		
	4690#JEONG1266_24640	TRNSINTIMINR#Translocated intimin receptor (Tir) signature.	731	0.0
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.
		          Length = 549
		
		 Score =  731 bits (1887), Expect = 0.0
		 Identities = 328/566 (57%), Positives = 390/566 (68%), Gaps = 25/566 (4%)
		
		Query: 1   MPIGNLGHNPNVNNSIPPAPPLPSQTDGA--GGRGQLINSTGPLGSRALFTPVRNSMADS 58
		           MPIGNLG+N N N+ IPPAPPLPSQTDGA  GG G LI+STG LGSR+LF+P+RNSMADS
		Sbjct: 1   MPIGNLGNNVNGNHLIPPAPPLPSQTDGAARGGTGHLISSTGALGSRSLFSPLRNSMADS 60
		
		Query: 59  GDNRASDVPGLPVNPMRLAA--SEITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDG 116
		            D+R  D+PGLP NP RLAA  SE  L  GFEVLHD GPLD LN QIG S FRVE Q DG
		Sbjct: 61  VDSR--DIPGLPTNPSRLAAATSETCLLGGFEVLHDKGPLDILNTQIGPSAFRVEVQADG 118
		
		Query: 117 KHIAVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGGAGHAMVTVASDITEAR 176
		            H A+G++NG+E SV LS QE++ LQSID EGK++FVFTGGRGG+GH MVTVASDI EAR
		Sbjct: 119 THAAIGEKNGLEVSVTLSPQEWSSLQSIDTEGKNRFVFTGGRGGSGHPMVTVASDIAEAR 178
		
		Query: 177 QRILELLEPKGTGESK-GAGESKGVGELRESNSGAENTTETQTSTSTSSLRSDPKLWLAL 235
		            +IL  L+P   G  +    +++ VG    S       +ET TST+ SS+RSDPK W+++
		Sbjct: 179 TKILAKLDPDNHGGRQPKDVDTRSVGVGSASGIDDGVVSETHTSTTNSSVRSDPKFWVSV 238
		
		Query: 236 GTVATGLIGLAATGIVQALALTPEPDSPTTTDPDAAASATETATRDQLTKEAFQNPDNQK 295
		           G +A GL GLAATGI QALALTPEPD PTTTDPD AA+A E+AT+DQLT+EAF+NP+NQK
		Sbjct: 239 GAIAAGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQLTQEAFKNPENQK 298
		
		Query: 296 VNIDELGNAIPSGVLKDDVVANIEEQAKAAGEEAKQQAIENNAQAQKKYDEQQAKRQEEL 355
		           VNID  GNAIPSG LKDD+V  I +QAK AGE A+QQA+E+NAQAQ++Y++Q A+RQEEL
		Sbjct: 299 VNIDANGNAIPSGELKDDIVEQIAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEEL 358
		
		Query: 356 KVSSGAGYGLSGALILGGGIGVAVTAALHRKNQPVEQTTTTTTTTTTTSARTVENKPANN 415
		           ++SSG GYGLS ALI+ GGIG  VT ALHR+NQP EQTTTTTT        TV  +    
		Sbjct: 359 QLSSGIGYGLSSALIVAGGIGAGVTTALHRRNQPAEQTTTTTT-------HTVVQQQTGG 411
		
		Query: 416 TPAQGNVDTPGSEDTMESRRSSMASTSSTFFDTSSIGTVQNPYADV---KTSLHDSQVPT 472
		            P       P        RR S  S +ST +  SS   V NPYA+V   + SL   Q   
		Sbjct: 412 IPQHKVALMPQERRRFSDRRDSQGSVASTHWSDSS-SEVVNPYAEVGGARNSLSAHQPEE 470
		
		Query: 473 SNSNTSVQNMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDM 532
		              +    + G      YS IQ+        G RL+G P  GIQSTYA LA SGGLR  M
		Sbjct: 471 HIYDEVAADPG------YSVIQNFSGSGPVTG-RLIGTPGQGIQSTYALLANSGGLRLGM 523
		
		Query: 533 GGLTGGSNSAVNTSNNPPAPGSHRFV 558
		           GGLT G  +AV++ N  P PG  RFV
		Sbjct: 524 GGLTSGGETAVSSVNAAPTPGPVRFV 549
		
		
	4691#JEONG1266_24645	PF05932#Tir chaperone protein (CesT)	122	4e-39
		>PF05932#Tir chaperone protein (CesT)
		          Length = 127
		
		 Score =  122 bits (309), Expect = 4e-39
		 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
		
		Query: 1   MSSRS-ELLLEKFAEKIGIGSISFNENRLCSFAIDEIYYISLS-DANDEYMMIYGVCGKF 58
		           MS+   + LL+ F+  + +  + F+++  C+  ID  + ++LS D   E +++ G+    
		Sbjct: 1   MSNLFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPH 60
		
		Query: 59  PTDNSNFALEILNANLWFAENGGPYLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVK 118
		                     +L   L    N GP L  +  +         P +  +   L+ E+  +++
		Sbjct: 61  KD---IPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLE 117
		
		Query: 119 SMENL 123
		            M   
		Sbjct: 118 WMRGW 122
		
		
	4692#JEONG1266_24650	INTIMIN#Intimin signature.	1459	0.0
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 1459 bits (3777), Expect = 0.0
		 Identities = 780/942 (82%), Positives = 837/942 (88%), Gaps = 11/942 (1%)
		
		Query: 1   MITHGCYTRTRHKHKLKKTLIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHDSYQ 60
		           MITHG Y RTRHKHKLKKT IMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTH+SYQ
		Sbjct: 1   MITHGFYARTRHKHKLKKTFIMLSAGLGLFFYVNQNSFANGENYFKLGSDSKLLTHNSYQ 60
		
		Query: 61  NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAAPGQQIILPLKKLPFE 120
		           NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKA PGQQIILPLKKLPFE
		Sbjct: 61  NRLFYTLKTGETVADLSKSQDINLSTIWSLNKHLYSSESEMMKAEPGQQIILPLKKLPFE 120
		
		Query: 121 YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR 180
		           YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR
		Sbjct: 121 YSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQLQSR 180
		
		Query: 181 SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM 240
		           SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM
		Sbjct: 181 SLNGDYAKDTALGIAGNQASSQLQAWLQHYGTAEVNLQSGNNFDGSSLDFLLPFYDSEKM 240
		
		Query: 241 LAFGQVGARYIDSRFTANLGAGQRFFLPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF 300
		           LAFGQVGARYIDSRFTANLGAGQRFFLP NMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF
		Sbjct: 241 LAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYF 300
		
		Query: 301 KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLIYEQYYGDNVAL 360
		           KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKL+YEQYYGDNVAL
		Sbjct: 301 KSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVAL 360
		
		Query: 361 FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKSWSQQIE 420
		           FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDK WSQQIE
		Sbjct: 361 FNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIE 420
		
		Query: 421 PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTEHSTQKIQLIVKSKY 480
		           PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTE STQKIQLIVKSKY
		Sbjct: 421 PQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQLIVKSKY 480
		
		Query: 481 GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNIYKVTARAYDRNGNSSN 540
		           GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSN+YKVTARAYDRNGNSSN
		Sbjct: 481 GLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN 540
		
		Query: 541 NVQLTITVLSNGQVVDQVGVTDFTADKTSAKADNADTITYTATVKKNGVAQANVPVSFNI 600
		           NV LTITVLSNGQVVDQVGVTDFTADKTSAKAD  + ITYTATVKKNGVAQANVPVSFNI
		Sbjct: 541 NVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNI 600
		
		Query: 601 VSGTATLGANSAKTDANGKATVTLKSSTPGQVVVSAKTAEMTSALNASAVIFFDQTKASI 660
		           VSGTA L ANSA T+ +GKATVTLKS  PGQVVVSAKTAEMTSALNA+AVIF DQTKASI
		Sbjct: 601 VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI 660
		
		Query: 661 TEIKADKTTAVANGKDAIKYTVKVMKNGQPVNNQSVTFSTNFGMFNGKSQTQATTGNDGR 720
		           TEIKADKTTAVANG+DAI YTVKVMK  +PV+NQ VTF+T  G  +    +   T  +G 
		Sbjct: 661 TEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLS---NSTEKTDTNGY 717
		
		Query: 721 ATITLTSSSAGKATVSATVSDGA-EVKATEVTFFDELKID-NKVDIIGNNVRGELPNIWL 778
		           A +TLTS++ GK+ VSA VSD A +VKA EV FF  L ID   ++I+G  V+G+LP +WL
		Sbjct: 718 AKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWL 777
		
		Query: 779 QYGQFKLKASGGDGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIKATSGDKQTVSYTIK 837
		           QYGQ  LKASGG+G Y+W S N +IA+VDA SG+VTL  KG+  I   S D QT +YTI 
		Sbjct: 778 QYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA 837
		
		Query: 838 APSYMI--KVDKQAYYADAMSICKNL---LPSTQTVLSDIYDSWGAANKYSHYSSMNSIT 892
		            P+ +I   + K+  Y DA++ CKN    LPS+Q  L +++ +WGAANKY +Y S  +I 
		Sbjct: 838 TPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTII 897
		
		Query: 893 AWIKQTSSEQRSGVSSTYNLITQNPLPGVNVNTPNVYAVCVE 934
		           +W++QT+ + +SGV+STY+L+ QNPL  +  +  N YA CV+
		Sbjct: 898 SWVQQTAQDAKSGVASTYDLVKQNPLNNIKASESNAYATCVK 939
		
		
	4694#JEONG1266_24660	PF07201#Hypersensitivity response secretion protein HrpJ	28	0.047
		>PF07201#Hypersensitivity response secretion protein HrpJ
		          Length = 293
		
		 Score = 28.3 bits (63), Expect = 0.047
		 Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 23/225 (10%)
		
		Query: 39  SPLINLQNELAMITSSSLSETIEGLSLGYRK---GSARKEEEGSTIEKLLNDMQELLTLT 95
		             + ++  E+        SE  E LSL  RK     AR  +    + + L+ + EL    
		Sbjct: 47  QSIADMAEEVTF----VFSERKE-LSLDKRKLSDSQARVSDVEEQVNQYLSKVPEL---E 98
		
		Query: 96  DSDKIKELS--LKNSGL--LEQHDPTLAMFGNMPKGEIVALISSLLQSK--FVKIELKKK 149
		               + EL   L NS    L Q    L      P  +   L       K       L   
		Sbjct: 99  QKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHL 158
		
		Query: 150 YARLLLDLLGEDDWELAL-----LSWLGVGELNQEGIQKIKKLYEKAKDEDSENGASLLD 204
		             + L+ +  E    + L            +     +Q ++  Y  A     +   ++  
		Sbjct: 159 VEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDAV-MGYQGIYAIWS 217
		
		Query: 205 WFMEIKDLPEREKHLKVIIRALSFDLSYMSSFEDKVKTSSIISDL 249
		              +     + +  +  + +ALS DL    S   + K   +ISDL
		Sbjct: 218 DLQKRFPNGDIDSVILFLQKALSADLQSQQSGSGREKLGIVISDL 262
		
		
	4696#JEONG1266_24670	BACINVASINB#Salmonella/Shigella invasin protein B signature.	30	0.020
		>BACINVASINB#Salmonella/Shigella invasin protein B signature.
		          Length = 593
		
		 Score = 29.7 bits (66), Expect = 0.020
		 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
		
		Query: 112 MMMVTLLSLDTSAQKVSSLKNSNEIY---MDGQTKALENKTQEYKKQLEEQQKAEEKSQK 168
		           M+M   + +        SL+N   ++    +G+   +E K+ E++   EE +KAEE ++ 
		Sbjct: 258 MLMAMFIEI-VGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQ---EETRKAEETNRI 313
		
		Query: 169 SKIVGQVFGWLGVALTAVAAVFNPALWAVVAIGATAMALQTA 210
		              +G+V G L   ++ VAAVF     A +A+ A  +A+  A
		Sbjct: 314 MGCIGKVLGALLTIVSVVAAVFTGG--ASLALAAVGLAVMVA 353
		
		
JEONG1266_25270	JEONG1266_25295	N	Y	N	JEONG1266_25195	JEONG1266_25395
	JEONG1266_25270	0	12	1.653089	hypothetical protein
	JEONG1266_25275	-1	12	1.426598	trimethylamine N-oxide reductase I catalytic
	JEONG1266_25280	-1	12	0.314602	acetyltransferase
	JEONG1266_25285	-1	14	-2.566816	3-methyladenine DNA glycosylase
	JEONG1266_25290	0	13	-1.723473	autotransporter outer membrane beta-barrel
	JEONG1266_25295	0	14	-2.138721	hypothetical protein
	4816#JEONG1266_25275	OMPADOMAIN#OMPA domain signature.	113	2e-32
		>OMPADOMAIN#OMPA domain signature.
		          Length = 346
		
		 Score =  113 bits (285), Expect = 2e-32
		 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
		
		Query: 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY--PKTAVNVIGYTDSTGGHDLNMRLS 165
		             + ++V F+ + ATLKP G   L  +   L        +V V+GYTD  G    N  LS
		Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS 274
		
		Query: 166 QQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGK---------AQNRRVEITL 216
		           ++RA SV   LI++G+ A +I  +G+G +NP+  N+    K         A +RRVEI +
		Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
		
		Query: 217 SP 218
		             
		Sbjct: 335 KG 336
		
		
	4818#JEONG1266_25285	SACTRNSFRASE#Streptothricin acetyltransferase signature.	33	2e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 33.0 bits (75), Expect = 2e-04
		 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
		
		Query: 76  VAPKAVRRGIGKALMQYV-----QQRYPHLMLEVYQKNQPAIDFYQAQGFHI 122
		           VA    ++G+G AL+        +  +  LMLE    N  A  FY    F I
		Sbjct: 97  VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
		
		
	4820#JEONG1266_25295	ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.	27	0.045
		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.
		          Length = 331
		
		 Score = 27.5 bits (61), Expect = 0.045
		 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
		
		Query: 119 SMYNEFGDSTTTLTDPLWHASVSTLGWRVDSRLGDLRPWAQISYNQQFGENIWKAQSGLS 178
		           S+  +  D+     +   H S + +   +  R G++ P  ++SY   F  +         
		Sbjct: 228 SVAVQQQDAKLV-EENYSHNSQTEVAATLAYRFGNVTP--RVSYAHGFKGSF-------- 276
		
		Query: 179 RMTATNQNGNWLDVTVGADMLLNQNIAAYAA---LSQAENTTNNSDYLYTMGVSARF 232
		              ATN N ++  V VGA+   ++  +A  +   L + +  +        +G+  +F
		Sbjct: 277 --DATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
		
		
	4821#JEONG1266_25300	TCRTETA#Tetracycline resistance protein signature.	43	2e-06
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 42.5 bits (100), Expect = 2e-06
		 Identities = 47/275 (17%), Positives = 94/275 (34%), Gaps = 32/275 (11%)
		
		Query: 44  PVSQVAFSFGLLSLGLAIS----SSVAGKLQERFGVKRVTIASGILLGLGFFLTAHSDNL 99
		             + V   +G+L    A+     + V G L +RFG + V + S     + + + A +  L
		Sbjct: 37  HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL 96
		
		Query: 100 MMLWLS---AGVLVGLADGAGYLL----TLSNCVKWFPERKGLISAFAIGSYGLGSLGFK 152
		            +L++    AG+       AG  +          + F           +    LG     
		Sbjct: 97  WVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG---- 152
		
		Query: 153 FIDTQLLETVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMR 212
		                L+        F    A+  +  + G  L+ ++ K E +                R
		Sbjct: 153 -----LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWAR 207
		
		Query: 213 --KPQYWMLAVMFLTACMSG----LYVIGVAKDIAQSLAHLDVVSAANAVTVISIAN-LS 265
		                  ++AV F+   +      L+VI       +   H D  +   ++    I + L+
		Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVI-----FGEDRFHWDATTIGISLAAFGILHSLA 262
		
		Query: 266 GRLVLGILSDKIARIRVITIGQVISLVGMAALLFA 300
		             ++ G ++ ++   R + +G +    G   L FA
		Sbjct: 263 QAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297
		
		
		
		 Score = 36.7 bits (85), Expect = 1e-04
		 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 9/155 (5%)
		
		Query: 241 AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFA 300
		               AH  ++ A  A+   + A + G L     SD+  R  V+ +    + V  A +  A
		Sbjct: 39  NDVTAHYGILLALYALMQFACAPVLGAL-----SDRFGRRPVLLVSLAGAAVDYAIMATA 93
		
		Query: 301 PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIA 360
		           P   V +   I  VA   G T  V  + +++    +  A+++G +   FG G + G ++ 
		Sbjct: 94  PFLWVLYIGRI--VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151
		
		Query: 361 SLFGGFYVK--FYVIFALLILSLALSTTIRQPEQK 393
		            L GGF     F+   AL  L+      +     K
		Sbjct: 152 GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186
		
		
JEONG1266_25675	JEONG1266_25715	N	Y	N	JEONG1266_25600	JEONG1266_25800
	JEONG1266_25675	-1	14	-0.789688	hypothetical protein
	JEONG1266_25680	-1	18	-5.330199	hypothetical protein
	JEONG1266_25685	0	30	-9.825127	hypothetical protein
	JEONG1266_25690	0	32	-9.393098	hypothetical protein
	JEONG1266_25695	1	19	-4.890522	hypothetical protein
	JEONG1266_25700	1	17	-3.768677	hypothetical protein
	JEONG1266_25710	-1	14	-0.605436	multidrug ABC transporter ATP-binding protein
	JEONG1266_25715	0	17	2.678048	hypothetical protein
	4896#JEONG1266_25685	ALARACEMASE#Alanine racemase signature.	29	0.033
		>ALARACEMASE#Alanine racemase signature.
		          Length = 356
		
		 Score = 29.0 bits (65), Expect = 0.033
		 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
		
		Query: 226 ENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFL--NEQRNAHPNQSLKNTL 283
		           E +    RG  GP +L +  ++   +   + +     L T +  N Q  A  N  LK  L
		Sbjct: 63  EAITLRERGWKGP-ILMLEGFFHAQD---LEIYDQHRLTTCVHSNWQLKALQNARLKAPL 118
		
		Query: 284 AVHL------------PKRLVERLQQLGQIPDVSLKQL 309
		            ++L            P R++   QQL  + +V    L
		Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTL 156
		
		
	4901#JEONG1266_25715	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	83	8e-20
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 83.3 bits (206), Expect = 8e-20
		 Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 81/408 (19%)
		
		Query: 6   RHLAWWGVGLLAVAAIVAWWLLRPAGVP-EGFAVSNGRIEATEVDIASKIAGRIDTILVK 64
		           R +A++ +G L +A I++            G    +GR +     I       +  I+VK
		Sbjct: 58  RLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENSIVKEIIVK 113
		
		Query: 65  EGQFVREGEVLAKMDTRV----------------LQEQRLEAI----------------- 91
		           EG+ VR+G+VL K+                    L++ R + +                 
		Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173
		
		Query: 92  -------------------AQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSV 132
		                               Q    Q+     +  L+++++E     + +N+ +      
		Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233
		
		Query: 133 AKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQ-- 190
		             R     SL  + AI+   + +       A   L   K+Q+   ++ I +A+       
		Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293
		
		Query: 191 -----------AQTRVEAAQATERRIAADID--DSELKAPRDGRV-QYRVAEPGEVLAAG 236
		                       QT       T      +     S ++AP   +V Q +V   G V+   
		Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
		
		Query: 237 GRVLNMVDLSDVY-MTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQFTP 295
		             ++ +V   D   +T  +  +  G + +G  A + ++A P  R       V  V     
		Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVKNINL 410
		
		Query: 296 KTVETSDERLKLMFRVKARIPPELLQQHLEYV--KTGLPGVAWVRVNE 341
		             +E  D+RL L+F V   I    L    + +   +G+   A ++   
		Sbjct: 411 DAIE--DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456
		
		
	4902#JEONG1266_25720	PF05272#Virulence-associated E family protein	30	0.044
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.4 bits (68), Expect = 0.044
		 Identities = 9/26 (34%), Positives = 14/26 (53%)
		
		Query: 37  ARCMVGLIGPDGVGKSSLLSLISGAR 62
		               V L G  G+GKS+L++ + G  
		Sbjct: 595 FDYSVVLEGTGGIGKSTLINTLVGLD 620
		
		
	4903#JEONG1266_25725	ABC2TRNSPORT#ABC-2 type transport system membrane protein signat...	51	2e-09
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein
		           signature.
		          Length = 262
		
		 Score = 51.1 bits (122), Expect = 2e-09
		 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
		
		Query: 200 REREHGTVEHLLVMPITPFEIMMAKI-WSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPL 258
		           R     T E +L   +   +I++ ++ W+     L  +G+ +V    G      +    L
		Sbjct: 93  RMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY----TQWLSLL 148
		
		Query: 259 FMLGV-ALSLFATTSIGIFMGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQD 317
		           + L V AL+  A  S+G+ +  +A S         LV+ P+  LSG   P + +P + Q 
		Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208
		
		Query: 318 IMLIMPTTHFVSLAQAILYRGAGFEIVWPQFLTLMAIGGAFF-TIALLRFR 367
		               +P +H + L + I+      ++        + I   FF + ALLR R
		Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259
		
		
JEONG1266_26005	JEONG1266_26050	N	Y	N	JEONG1266_25930	JEONG1266_26125
	JEONG1266_26005	-2	23	2.576595	sn-glycerol-3-phosphate ABC transporter
	JEONG1266_26010	-1	23	3.313919	glycerol-3-phosphate transporter permease
	JEONG1266_26015	-2	21	3.188642	glycerol-3-phosphate transporter
	JEONG1266_26020	-2	23	3.479193	glycerol-3-phosphate transporter ATP-binding
	JEONG1266_26025	-2	22	3.706493	glycerophosphodiester phosphodiesterase
	JEONG1266_26030	-2	17	1.600773	hypothetical protein
	JEONG1266_26035	0	16	-2.001967	gamma-glutamyltransferase
	JEONG1266_26040	0	18	-3.724096	hypothetical protein
	JEONG1266_26045	0	21	-5.090801	hypothetical protein
	JEONG1266_26050	0	18	-4.552037	acetyltransferase
	4960#JEONG1266_26020	MALTOSEBP#Maltose binding protein signature.	39	2e-05
		>MALTOSEBP#Maltose binding protein signature.
		          Length = 396
		
		 Score = 39.3 bits (91), Expect = 2e-05
		 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
		
		Query: 134 GHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQ 193
		           G L++ P       L YNKD           PPKTW+++     +LKA G      +  +
		Sbjct: 127 GKLIAYPIAVEALSLIYNKDLLP-------NPPKTWEEIPALDKELKAKGKSALMFNLQE 179
		
		Query: 194 GWIQLENFSAWNGLPFASKNNGFDGTDAVLEF--NKPEQVKHIAMLEEMNKKGDFSYVGR 251
		            +      +A  G  F  +N  +D  D  ++    K      + +++  +   D  Y   
		Sbjct: 180 PYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDY--- 236
		
		Query: 252 KDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMP 291
		              +   F  G+ AMT     + +NI + +K NYGV ++P
		Sbjct: 237 -SIAEAAFNKGETAMTINGPWAWSNI-DTSKVNYGVTVLP 274
		
		
	4963#JEONG1266_26035	PF05272#Virulence-associated E family protein	31	0.010
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 30.8 bits (69), Expect = 0.010
		 Identities = 11/35 (31%), Positives = 19/35 (54%)
		
		Query: 33  IVMVGPSGCGKSTLLRMVAGLERVTEGDICINDQR 67
		           +V+ G  G GKSTL+  + GL+  ++    I   +
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
		
		
	4964#JEONG1266_26040	PF04619#Dr-family adhesin	30	0.004
		>PF04619#Dr-family adhesin
		          Length = 160
		
		 Score = 30.3 bits (68), Expect = 0.004
		 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
		
		Query: 29  VGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQD----LLRVDAGSW 84
		           +G       ++ D    + G+ FL+ D+N ++            W        + D GSW
		Sbjct: 70  LGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSW 129
		
		Query: 85  YGK 87
		            G 
		Sbjct: 130 GGI 132
		
		
	4966#JEONG1266_26050	NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature.	32	0.007
		>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature.
		          Length = 293
		
		 Score = 31.6 bits (71), Expect = 0.007
		 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
		
		Query: 276 RTPISGDYRGYQVYSMPPPSSGGIHIVQILNI--LENFDMKKYGF-GSADAMQIMAEAEK 332
		           R P+ G+ R   + SMPPP   G H  +I N+   + FD    G+ G   A  I++E EK
		Sbjct: 77  RRPM-GETRNVSLISMPPPWRPGEHADRITNLKFFKQFD----GYVGGQTAWGILSELEK 131
		
		Query: 333 YAYADRSEYLGDPDFVKVPWQA 354
		             Y         P F    WQ+
		Sbjct: 132 GRY---------PTFSYQDWQS 144
		
		
	4969#JEONG1266_26065	SACTRNSFRASE#Streptothricin acetyltransferase signature.	36	1e-05
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 36.5 bits (84), Expect = 1e-05
		 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
		
		Query: 55  VACIDGDVVGHLTIDVQQRPRRSHVADFGICVDARWKNRGVASALMREMIE------MCD 108
		           +  ++ + +G + I        + + D  +  D R K  GV +AL+ + IE       C 
		Sbjct: 69  LYYLENNCIGRIKIR-SNWNGYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125
		
		Query: 109 NWLRVDRIELTVFVDNAPAIKVYKKFGFEIEG 140
		             L    I       N  A   Y K  F I  
		Sbjct: 126 LMLETQDI-------NISACHFYAKHHFIIGA 150
		
		
JEONG1266_26485	JEONG1266_26535	N	Y	N	JEONG1266_26400	JEONG1266_26605
	JEONG1266_26485	-1	18	2.760935	phosphoribulokinase
	JEONG1266_26490	-2	14	3.014671	hypothetical protein
	JEONG1266_26495	-1	15	3.100136	hydrolase
	JEONG1266_26500	-2	15	3.344354	ABC transporter ATP-binding protein
	JEONG1266_26505	-1	15	3.404069	glutathione-regulated potassium-efflux system
	JEONG1266_26510	-1	16	1.857835	glutathione-regulated potassium-efflux system
	JEONG1266_26515	0	15	0.464347	hypothetical protein
	JEONG1266_26520	2	22	-0.637471	peptidylprolyl isomerase
	JEONG1266_26525	3	21	-0.505204	lysis protein
	JEONG1266_26530	3	18	-1.451948	peptidylprolyl isomerase
	JEONG1266_26535	2	22	-1.252078	hypothetical protein
	5053#JEONG1266_26490	PF07299#Fibronectin-binding protein (FBP)	32	0.002
		>PF07299#Fibronectin-binding protein (FBP)
		          Length = 219
		
		 Score = 31.8 bits (72), Expect = 0.002
		 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
		
		Query: 71  PEANDFGLLEQTFIEYGQSGKGKSRKYLHTYDEAVPWNQVPGTFTP 116
		           P+  +  + E ++       KG SRK++   ++   +  + GTF  
		Sbjct: 112 PDMEELDMKELSY--LSWIDKGSSRKFIIAKNDKNKFVGLQGTFQS 155
		
		
	5056#JEONG1266_26505	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	33	0.005
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 32.7 bits (74), Expect = 0.005
		 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
		
		Query: 504 KVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKE 563
		            +     D    +   ++    E +  +   ++      R+  +R     R   + L  E
		Sbjct: 272 AMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAE 331
		
		Query: 564 IARLEKEME---------------------KLNAQLAQAEEKLGDSELYDQSRKAELTAC 602
		             +LE++ +                     +L A+  + EE+   SE   QS + +L A 
		Sbjct: 332 HQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 391
		
		Query: 603 LQQQASAKSGLEECEMAWLEAQEQLEQMLLEG 634
		            + +   +  LEE     L A E+L + L E 
		Sbjct: 392 REAKKQVEKALEEANSK-LAALEKLNKELEES 422
		
		
		
		 Score = 32.0 bits (72), Expect = 0.008
		 Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
		
		Query: 513 EDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLEKEME 572
		           +  +  ++       +      E A  A  + D ++        +            +++
		Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST-------ADSAKIK 179
		
		Query: 573 KLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLL 632
		            L A+ A  E +  + E   +      TA   +  + ++          + ++ LE  + 
		Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239
		
		Query: 633 EGQSN 637
		              ++
		Sbjct: 240 FSTAD 244
		
		
	5057#JEONG1266_26510	ISCHRISMTASE#Isochorismatase signature.	32	0.001
		>ISCHRISMTASE#Isochorismatase signature.
		          Length = 312
		
		 Score = 31.9 bits (72), Expect = 0.001
		 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
		
		Query: 11  YAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLREHEVIVFQH-- 68
		           Y  P + D   N+V   P    + + +HD+  ++ D F         L  +   +     
		Sbjct: 9   YQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCV 68
		
		Query: 69  ----PLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESA------Y 118
		               P+   + P       DR L   F  GPG N  +G Y   +IT   PE        +
		Sbjct: 69  QLGIPVVYTAQPGSQNP-DDRALLTDFW-GPGLN--SGPYEEKIITELAPEDDDLVLTKW 124
		
		Query: 119 RYDALNRYPMSDVLR 133
		           RY A  R  + +++R
		Sbjct: 125 RYSAFKRTNLLEMMR 139
		
		
	5058#JEONG1266_26515	60KDINNERMP#60kDa inner membrane protein signature.	31	0.021
		>60KDINNERMP#60kDa inner membrane protein signature.
		          Length = 548
		
		 Score = 30.7 bits (69), Expect = 0.021
		 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
		
		Query: 261 TAIDPFKGLLLG---LFFISVGMSLNLGVLYTHL-LWVVISVVVLVAVKILVLYLLARLY 316
		            A+ P   L +    L+FIS  +   L  +++ +  W    +++   V+ ++  L     
		Sbjct: 318 AAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKA-- 375
		
		Query: 317 GVRSSERMQ 325
		              S  +M+
		Sbjct: 376 QYTSMAKMR 384
		
		
	5062#JEONG1266_26535	INFPOTNTIATR#Macrophage infectivity potentiator signature.	132	5e-40
		>INFPOTNTIATR#Macrophage infectivity potentiator signature.
		          Length = 233
		
		 Score =  132 bits (334), Expect = 5e-40
		 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 9/226 (3%)
		
		Query: 28  AAKPATTADSKAAFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAF 87
		           A   A  A    +   D  K +Y++GA LG       K  +  GI ++ D L  G+QD  
		Sbjct: 14  AMSTAMAATDATSLTTDKDKLSYSIGADLG-------KNFKNQGIDINPDVLAKGMQDGM 66
		
		Query: 88  A-DKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSST 146
		           +  +  L++++++  L  F+  + +   A+  K A +N+AKG  +      + G+    +
		Sbjct: 67  SGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPS 126
		
		Query: 147 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGL 206
		           GL Y++++AG G  P  SDTV V Y GTLIDG  FD++   G+P +F++  VIPGWTE L
		Sbjct: 127 GLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEAL 186
		
		Query: 207 KNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDVKPA 251
		           + +  G   ++ +P +LAYG   V G I PN TL+F + L+ VK A
		Sbjct: 187 QLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKA 232
		
		
	5063#JEONG1266_26540	ACRIFLAVINRP#Acriflavin resistance protein family signature.	29	0.022
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.
		          Length = 1034
		
		 Score = 29.0 bits (65), Expect = 0.022
		 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
		
		Query: 160 ASSVEDLVTQTLEFTIEEVNADRNV-SNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI 218
		           A +V+D VTQ +E  +  ++    + S +     + + L  +   D   A  QV ++L +
		Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQL 113
		
		Query: 219 SK 220
		           + 
		Sbjct: 114 AT 115
		
		
JEONG1266_26565	JEONG1266_26585	N	Y	N	JEONG1266_26490	JEONG1266_26685
	JEONG1266_26565	4	48	-1.676351	translation elongation factor G
	JEONG1266_26570	3	45	-1.739802	translation elongation factor Tu
	JEONG1266_26575	2	31	-1.824731	bacterioferritin-associated ferredoxin
	JEONG1266_26580	0	27	-3.243210	bacterioferritin
	JEONG1266_26585	3	31	-1.915570	peptidase A24
	5069#JEONG1266_26570	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	613	0.0
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score =  613 bits (1583), Expect = 0.0
		 Identities = 178/698 (25%), Positives = 304/698 (43%), Gaps = 81/698 (11%)
		
		Query: 9   RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
		           +  NIG+ AH+DAGKTT TE +L+ +G   ++G V  G    D    E++RGITI +  T
		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61
		
		Query: 69  TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
		           +  W          ++NIIDTPGH+DF  EV RS+ VLDGA+++  A  GVQ Q+  ++ 
		Sbjct: 62  SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114
		
		Query: 129 QANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKM 188
		              K  +P I F+NK+D+ G +   V   IK +L A  V  Q           V     M
		Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164
		
		Query: 189 KAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEI 248
		              N+ +++Q                         ++  E +++L+EKY+ G+ L   E+
		Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200
		
		Query: 249 KGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308
		           +     R  N  +  V  GSA  N G+  +++ + +   S                    
		Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243
		
		Query: 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHA 368
		                        FKI        L + R+YSGV++  D+V  S K  + +   +     
		Sbjct: 244 ---RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK-EKIKITEMYTSIN 299
		
		Query: 369 NKREEIKEVRAGDIAAAIG----LKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKT 424
		            +  +I +  +G+I         L  V  GDT   P      ER+E P P++   VEP  
		Sbjct: 300 GELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSK 354
		
		Query: 425 KADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 484
		              +E +  AL  ++  DP  R + D  +++ I++ +G++ +++    ++ +++VE  + 
		Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414
		
		Query: 485 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 544
		           +P V Y E   +K    E     +      +  + + + PL  GS   G ++ + +  G 
		Sbjct: 415 EPTVIYMERPLKK---AEYTIHIEVPPNPFWASIGLSVSPLPLGS---GMQYESSVSLGY 468
		
		Query: 545 IPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEG 604
		           +   +  AV +GI+   + G L G+ V D  I   +G Y+   S+   F++ A I  ++ 
		Sbjct: 469 LNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQV 527
		
		Query: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMF 664
		            KKA   LLEP +  ++  P+E       D  +    +   + +   V +  E+P   + 
		Sbjct: 528 LKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQ 587
		
		Query: 665 GYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEAR 702
		            Y + L   T GR+    E   Y        + V + R
		Sbjct: 588 EYRSDLTFFTNGRSVCLTELKGYHVT---TGEPVCQPR 622
		
		
	5070#JEONG1266_26575	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	80	3e-18
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score = 79.5 bits (196), Expect = 3e-18
		 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
		
		Query: 13  VNVGTIGHVDHGKTTLTAAI------TTVLAKTYGGAARAFDQIDNAPEEKARGITINTS 66
		           +N+G + HVD GKTTLT ++       T L     G  R     DN   E+ RGITI T 
		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT----DNTLLERQRGITIQTG 59
		
		Query: 67  HVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV 126
		              +         +D PGH D++  +    + +DGAIL+++A DG   QTR      R++
		Sbjct: 60  ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119
		
		Query: 127 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE 186
		           G+P  I F+NK D    +  L  V  +++E LS          +     +       +W+
		Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176
		
		Query: 187 AKILELAGFLDSYIPEPE 204
		             I      L+ Y+    
		Sbjct: 177 TVIEGNDDLLEKYMSGKS 194
		
		
	5072#JEONG1266_26585	HELNAPAPROT#Helicobacter neutrophil-activating protein A family ...	38	3e-06
		>HELNAPAPROT#Helicobacter neutrophil-activating protein A family
		           signature.
		          Length = 153
		
		 Score = 38.3 bits (89), Expect = 3e-06
		 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
		
		Query: 44  EYHESIDEMKHADKYIERILFLEGIPN--LQDLGKL------GIGEDVEEMLQSDLRLEL 95
		           E ++   E    D   ER+L + G P   +++  +       G      EM+Q+ +    
		Sbjct: 52  ELYDHAAE--TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYK 109
		
		Query: 96  EGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETEL 138
		           + + + +  I  A+   D  + D+ + ++ + E  +  L + L
		Sbjct: 110 QISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
		
		
	5073#JEONG1266_26590	PREPILNPTASE#Type IV prepilin cysteine protease (C20) family sig...	141	1e-44
		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family
		           signature.
		          Length = 290
		
		 Score =  141 bits (358), Expect = 1e-44
		 Identities = 65/142 (45%), Positives = 84/142 (59%), Gaps = 2/142 (1%)
		
		Query: 4   TLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGY 63
		           TL  L+L   L AL F  D    LLPD+ T PLLW GLLF  +     L DA+ GA+ GY
		Sbjct: 134 TLAALLLTWVLVALTFI-DLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGY 192
		
		Query: 64  GTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLM 123
		                +YW +++L  KEG+GYGD K LAALGAW  W  LP +V L +S     + IGL++
		Sbjct: 193 LVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALP-IVLLLSSLVGAFMGIGLIL 251
		
		Query: 124 RGKESLKNPLPFGPFLAAAGFV 145
		                   P+PFGP+LA AG++
		Sbjct: 252 LRNHHQSKPIPFGPYLAIAGWI 273
		
		
JEONG1266_26885	JEONG1266_26910	N	Y	N	JEONG1266_26775	JEONG1266_27005
	JEONG1266_26885	-3	12	-1.635490	hypothetical protein
	JEONG1266_26890	-3	11	-1.926286	efflux transporter periplasmic adaptor subunit
	JEONG1266_26895	-3	16	-2.451567	transcriptional regulator
	JEONG1266_26900	-2	15	-2.130398	hypothetical protein
	JEONG1266_26905	-2	13	0.063669	methyltransferase
	JEONG1266_26910	-3	13	0.666843	Fis family transcriptional regulator
	5125#JEONG1266_26885	adhesinb#Adhesin B signature.	28	0.004
		>adhesinb#Adhesin B signature.
		          Length = 310
		
		 Score = 27.5 bits (61), Expect = 0.004
		 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
		
		Query: 1  MKR---LIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGG 57
		          MK+   L+ + L    LA C+           +  +V TN+ +   T++       IAG 
		Sbjct: 1  MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKN-------IAGD 53
		
		Query: 58 AAAVAGLT 65
		             +  + 
		Sbjct: 54 KINLHSIV 61
		
		
	5126#JEONG1266_26895	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	43	1e-06
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 43.3 bits (102), Expect = 1e-06
		 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 38/217 (17%)
		
		Query: 98  ATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADA-RQADAAV 156
		                     K +L + E+    A    +             Q +   I D  RQ    +
		Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLV----------TQLFKNEILDKLRQTTDNI 311
		
		Query: 157 IAAKATVESARINLAYTKVTAPISGRIGK-STVTEGALVTNGQTTELATVQQLDPIYVDV 215
		                 +         + + AP+S ++ +    TEG +VT  +T  +  V + D + V  
		Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTA 370
		
		Query: 216 TQSSND--FMRLKQSVEQGNLHKENATSNVELVMENGQTYP-LKGTLQ--FSDVTVDEST 270
		              + D  F+ + Q+              +++       Y  L G ++    D   D+  
		Sbjct: 371 LVQNKDIGFINVGQNAI------------IKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418
		
		Query: 271 GSIT--LRAV------FPNPQHTLLPGMFVRARIDEG 299
		           G +   + ++        N    L  GM V A I  G
		Sbjct: 419 GLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455
		
		
		
		 Score = 34.4 bits (79), Expect = 7e-04
		 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
		
		Query: 46  TAPLEVKTELPGR-TNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANY 104
		              +E+     G+ T++ R  E++P  + IV      EG  V+ G  L ++     +A  
		Sbjct: 77  LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA-- 134
		
		Query: 105 DSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVE 164
		                +  K++++   A L   RY  L         E ++        +           
		Sbjct: 135 -----DTLKTQSSLLQARLEQTRYQIL-----SRSIELNKLPELKLPDEPYFQNVSEEEV 184
		
		Query: 165 SARINLA 171
		               +L 
		Sbjct: 185 LRLTSLI 191
		
		
		
		 Score = 29.0 bits (65), Expect = 0.031
		 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
		
		Query: 65  AEVRPQVSGIVLNRN-FTEGSDVQAGQSLYQIDP 97
		           + +R  VS  V      TEG  V   ++L  I P
		Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
		
		
	5127#JEONG1266_26900	HTHTETR#TetR bacterial regulatory protein HTH signature.	127	6e-39
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score =  127 bits (321), Expect = 6e-39
		 Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
		
		Query: 1   MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN 60
		           MA++TK EA +TRQ +++ A+  F+Q GVS T+L +IA AA VTRGAIYWHF++K+ LF+
		Sbjct: 1   MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
		
		Query: 61  EMW-LQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEF 119
		           E+W L + ++ EL  E   A    DP   LRE LI  L+      R++ L++I++HKCEF
		Sbjct: 61  EIWELSESNIGELELE-YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119
		
		Query: 120 NDEM-LAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIIDGAFSGIVQNWL 178
		             EM + +   R     +   + + L+ C +   +  +L      II+ G  SG+++NWL
		Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179
		
		Query: 179 MNMAGYDLYKQAPALVDNVLRMFMPDENI 207
		                +DL K+A   V  +L M++    +
		Sbjct: 180 FAPQSFDLKKEARDYVAILLEMYLLCPTL 208
		
		
	5130#JEONG1266_26915	DNABINDNGFIS#DNA-binding protein FIS signature.	157	3e-54
		>DNABINDNGFIS#DNA-binding protein FIS signature.
		          Length = 98
		
		 Score =  157 bits (399), Expect = 3e-54
		 Identities = 98/98 (100%), Positives = 98/98 (100%)
		
		Query: 1  MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60
		          MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ
		Sbjct: 1  MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60
		
		Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
		          PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
		Sbjct: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
		
		
JEONG1266_27020	JEONG1266_27055	N	Y	N	JEONG1266_26945	JEONG1266_27140
	JEONG1266_27020	-3	13	-0.307088	efflux transporter periplasmic adaptor subunit
	JEONG1266_27025	-2	13	0.096594	p-hydroxybenzoic acid efflux pump subunit AaeB
	JEONG1266_27030	-3	14	-0.088754	hypothetical protein
	JEONG1266_27035	-2	17	-0.371454	hypothetical protein
	JEONG1266_27040	-2	18	0.439108	arginine repressor
	JEONG1266_27045	-2	13	0.570169	malate dehydrogenase
	JEONG1266_27050	-2	15	0.774247	outer membrane-stress sensor serine
	JEONG1266_27055	-2	13	0.722971	serine endoprotease DegQ
	5152#JEONG1266_27025	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	51	2e-09
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 51.4 bits (123), Expect = 2e-09
		 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
		
		Query: 99  LAQEKRQEAGRRNRLGVQ-AMSREEIDQANNVLQT-VLHQLAKAQAT-------RDLAKL 149
		              E R    +  ++  +   ++EE      + +  +L +L +               + 
		Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323
		
		Query: 150 DLERTVIRAPADGWVTNLNVYT-GEFITRGSTAVALVKQNSFY-VLAYMEETKLEGVRPG 207
		             + +VIRAP    V  L V+T G  +T   T + +V ++    V A ++   +  +  G
		Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG 383
		
		Query: 208 YRAEIT----PLGSNKVLKGTVDSVAA 230
		             A I     P      L G V ++  
		Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINL 410
		
		
		
		 Score = 47.9 bits (114), Expect = 3e-08
		 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 17/163 (10%)
		
		Query: 6   RKFSRTAITVVLVILAFIAIFNAWVYYTE----SPWTRDARFSADVVAIAPDVSGLITQV 61
		              SR    V   I+ F+ I        +    +        S     I P  + ++ ++
		Sbjct: 51  TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110
		
		Query: 62  NVH-NQLVKKGQVLFTIDQPR-------YQKALEEAQADVAYYQVLAQEKRQEAGRRNRL 113
		            V   + V+KG VL  +            Q +L +A+ +   YQ+L++    E  +   L
		Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS--IELNKLPEL 168
		
		Query: 114 GVQAMSREEIDQANNVL---QTVLHQLAKAQATRDLAKLDLER 153
		            +      +      VL     +  Q +  Q  +   +L+L++
		Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211
		
		
	5156#JEONG1266_27045	ARGREPRESSOR#Bacterial arginine repressor signature.	169	4e-57
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score =  169 bits (430), Expect = 4e-57
		 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
		
		Query: 15  KALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74
		           + ++   +  +Q E+V  L++ G+ N+ Q+ VSR + +   V+         Y LPA+  
		Sbjct: 11  REIITANEIETQDELVDILKKDGY-NVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQR 69
		
		Query: 75  VPTTSSPLKNLV---LDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 131
		               S   ++L+   + ID    ++V+ T PG AQ I  L+D+L   E I+GTI GDDTI
		Sbjct: 70  FNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEE-IMGTICGDDTI 128
		
		Query: 132 FTTPANGFTVKDLYEAILELF 152
		                     K + + ILEL 
		Sbjct: 129 LIICRTHDDTKVVQKKILELL 149
		
		
	5157#JEONG1266_27050	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	28	0.045
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 28.1 bits (62), Expect = 0.045
		 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 27/167 (16%)
		
		Query: 3   VAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED 62
		             + GAA GIG+A+A  L      G+ ++  D  P      V  S    A   + F  + 
		Sbjct: 11  AFITGAAQGIGEAVARTL---ASQGAHIAAVDYNP-EKLEKVVSSLKAEARHAEAFPADV 66
		
		Query: 63  ATPA------------LEGADVVLISAGVARK------PGMDRSDLFNVNAGIVKNLVQQ 104
		              A            +   D+++  AGV R          +    F+VN+  V N  + 
		Sbjct: 67  RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126
		
		Query: 105 VAKTCPK----ACIGIITNPVNTT-VAIAAEVLKKAGVYDKNKLFGV 146
		           V+K        + + + +NP      ++AA    KA      K  G+
		Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173
		
		
	5158#JEONG1266_27055	V8PROTEASE#V8 serine protease family signature.	53	8e-10
		>V8PROTEASE#V8 serine protease family signature.
		          Length = 336
		
		 Score = 52.7 bits (126), Expect = 8e-10
		 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 26/160 (16%)
		
		Query: 77  RTLGSGVIMDQRGYIITNKHVINDADQIIVALQ------------DGRVFEALLVGSDSL 124
		             + SGV++  +  ++TNKHV++       AL+            +G      +      
		Sbjct: 101 TFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159
		
		Query: 125 TDLAVLKI-------NATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATG 177
		            DLA++K        +    +    ++      +   +   G P +     T     + G
		Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESKG 216
		
		Query: 178 RIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 217
		           +I      +   +Q D S   GNSG  + N   E++GI+ 
		Sbjct: 217 KI---TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
		
		
	5159#JEONG1266_27060	V8PROTEASE#V8 serine protease family signature.	72	6e-16
		>V8PROTEASE#V8 serine protease family signature.
		          Length = 336
		
		 Score = 72.0 bits (176), Expect = 6e-16
		 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 38/184 (20%)
		
		Query: 90  GLGSGVIINASKGYVLTNNHVINQAQKISIQL------------NDGREFDAKLIGSDDQ 137
		            + SGV++   K  +LTN HV++        L             +G     ++     +
		Sbjct: 102 FIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159
		
		Query: 138 SDIALLQIQN-------PSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALG 190
		            D+A+++             +    ++++ + +V       G P           V+ + 
		Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VATMW 212
		
		Query: 191 RSGLNLEGLEN-FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 249
		            S   +  L+   +Q D S   GNSG  + N   E+IGI+           G+       
		Sbjct: 213 ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263
		
		Query: 250 MART 253
		           +   
		Sbjct: 264 VFIN 267
		
		
