| S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
| 1 | SDY_0010 | SDY_0019 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0010 | 2 | 27 | -0.450898 | hypothetical protein | |
| SDY_0011 | 2 | 25 | -0.589636 | hypothetical protein | |
| SDY_0012 | 0 | 23 | -0.441697 | hypothetical protein | |
| SDY_0013 | 0 | 22 | -0.914055 | molecular chaperone DnaK | |
| SDY_0014 | -2 | 16 | -2.632286 | molecular chaperone DnaJ | |
| SDY_0015 | 0 | 21 | -4.340386 | Gef protein | |
| SDY_0017a | 0 | 18 | -4.095268 | insertion element iso-IS1N protein InsA | |
| SDY_0018 | 0 | 17 | -3.675240 | pH-dependent sodium/proton antiporter | |
| SDY_0019 | -1 | 19 | -4.553865 | transcriptional activator NhaR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0011 | PF07201 | 29 | 0.018 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0013 | SHAPEPROTEIN | 142 | 7e-40 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0015 | HOKGEFTOXIC | 59 | 2e-16 | Hok/Gef cell toxic protein family signature. | |
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. | |||||
| 2 | SDY_0084a | SDY_0094 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0084a | -1 | 17 | 3.368745 | insertion element iso-IS1N protein InsA | |
| SDY_0085 | 0 | 15 | 3.515714 | insertion element IS1 protein InsA | |
| SDY_0086 | -1 | 16 | 3.840479 | insertion element iso-IS1d protein InsB | |
| SDY_0088 | 0 | 16 | 4.472090 | L-ribulose-5-phosphate 4-epimerase | |
| SDY_0089 | 0 | 16 | 4.132357 | L-arabinose isomerase | |
| SDY_0090 | 1 | 15 | 4.184618 | ribulokinase | |
| SDY_0092 | 0 | 15 | 3.496405 | hypothetical protein | |
| SDY_0093 | 1 | 15 | 3.253231 | thiamine ABC transporter ATP-binding protein | |
| SDY_0094 | 1 | 16 | 3.201204 | thiamine ABC transporter permease |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0094 | PF06580 | 34 | 0.001 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 3 | SDY_0219 | SDY_0252 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0219 | -2 | 22 | -3.732227 | D,D-heptose 1,7-bisphosphate phosphatase | |
| SDY_0226 | -2 | 24 | -3.763945 | ***2,5-diketo-D-gluconate reductase B | |
| SDY_0227 | -1 | 24 | -3.153102 | LysR family transcriptional regulator | |
| SDY_0228 | -1 | 23 | -2.843289 | hypothetical protein | |
| SDY_0230 | -1 | 22 | -2.923276 | membrane-bound lytic murein transglycosylase D | |
| SDY_0231 | -1 | 24 | -3.776938 | hydroxyacylglutathione hydrolase | |
| SDY_0232 | -2 | 20 | -3.269815 | hypothetical protein | |
| SDY_0233 | -3 | 18 | -3.029468 | ribonuclease H | |
| SDY_0234 | -3 | 23 | -3.294244 | DNA polymerase III subunit epsilon | |
| SDY_0236 | 0 | 24 | -3.463382 | *insertion element iso-IS1d protein InsB | |
| SDY_0237 | 0 | 22 | -2.359451 | insertion element IS1 protein InsA | |
| SDY_0238 | 0 | 20 | -2.400301 | hypothetical protein | |
| SDY_0241a | -1 | 15 | -0.443327 | insertion element iso-IS1N protein InsA | |
| SDY0242a | 0 | 14 | 0.201113 | insertion element iso-IS1N protein InsA | |
| SDY_0242 | 0 | 15 | -0.307963 | insertion element iso-IS1n protein InsB | |
| SDY_0245 | 1 | 16 | -1.196660 | hypothetical protein | |
| SDY_0246 | 2 | 14 | -2.456163 | C-lysozyme inhibitor | |
| SDY_0248 | 3 | 17 | -1.885798 | phosphoheptose isomerase | |
| SDY_0249 | 3 | 19 | -2.486921 | amidotransferase | |
| SDY_0250 | 2 | 25 | -3.664786 | hypothetical protein | |
| SDY_0251 | 3 | 27 | -3.229773 | hypothetical protein | |
| SDY_0252 | 3 | 26 | -3.051275 | damage-inducible protein J |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0251 | ENTSNTHTASED | 27 | 0.012 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
| 4 | SDY_0263a | SDY_0276 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0263a | 1 | 14 | 3.522902 | insertion element iso-IS1N protein InsA | |
| SDY_0261 | 1 | 16 | 3.672392 | insertion element IS1 protein InsB | |
| SDY_0267 | 1 | 16 | 3.761076 | insertion element iso-IS1d protein InsB | |
| SDY_0268 | 1 | 13 | 3.957974 | membrane protein FdrA | |
| SDY_0269 | 1 | 13 | 4.163297 | hypothetical protein | |
| SDY_0270 | 1 | 17 | 3.593877 | carboxylase | |
| SDY_0272 | 1 | 16 | 2.075332 | insertion element iso-IS1d protein InsB | |
| SDY_0273 | 2 | 19 | 2.171729 | insertion element IS1 protein InsA | |
| SDY_0274 | 2 | 18 | 2.255597 | phosphoribosylaminoimidazole carboxylase ATPase | |
| SDY_0275 | 2 | 19 | 1.747161 | AIR carboxylase, catalytic subunit | |
| SDY_0276 | 2 | 17 | 1.012558 | UDP-2,3-diacylglucosamine hydrolase |
| 5 | SDY_0444 | SDY_0458 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0444 | 2 | 20 | 2.198886 | ferrochelatase | |
| SDY_0445 | 3 | 25 | 2.236509 | adenylate kinase | |
| SDY_0446 | 3 | 20 | 2.391122 | heat shock protein 90 | |
| SDY_0447 | 3 | 15 | 3.812532 | recombination protein RecR | |
| SDY_0448 | 4 | 14 | 3.316225 | hypothetical protein | |
| SDY_0449 | 3 | 14 | 1.572321 | DNA polymerase III subunits gamma and tau | |
| SDY_0450 | 1 | 13 | -0.655511 | adenine phosphoribosyltransferase | |
| SDY_0451 | 1 | 11 | -0.479273 | hypothetical protein | |
| SDY_0452 | 0 | 14 | 0.138339 | primosomal replication protein N'' | |
| SDY_0453 | 1 | 13 | -0.689974 | hypothetical protein | |
| SDY_0454 | 0 | 14 | -0.901188 | potassium efflux protein KefA | |
| SDY_0455 | 1 | 14 | -1.365642 | DNA-binding transcriptional repressor AcrR | |
| SDY_0456 | 2 | 15 | -1.092784 | acridine efflux pump | |
| SDY_0457 | 1 | 15 | -1.630472 | acridine efflux pump | |
| SDY_0458 | 0 | 26 | -5.485857 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0446 | FRAGILYSIN | 32 | 0.009 | Fragilysin metallopeptidase (M10C) enterotoxin signat... | |
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0449 | IGASERPTASE | 40 | 4e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0454 | RTXTOXIND | 32 | 0.015 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0455 | HTHTETR | 222 | 5e-76 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0456 | RTXTOXIND | 44 | 7e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0457 | ACRIFLAVINRP | 1365 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 6 | SDY_0493 | SDY_0504 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0493 | 3 | 19 | -1.118035 | hypothetical protein | |
| SDY_0494 | 6 | 22 | -1.163052 | carboxylate-amine ligase | |
| SDY_0495a | 10 | 31 | -1.441748 | toxic polypeptide | |
| SDY_0495 | 9 | 30 | -1.096614 | insertion element IS2 transposase InsD | |
| SDY_0496 | 8 | 29 | -1.374296 | insertion sequence element IS2 repressor TnpA | |
| SDY_0497 | 5 | 24 | -0.963603 | hypothetical protein | |
| SDY_0498 | 0 | 18 | 1.714071 | hypothetical protein | |
| SDY_0499 | -1 | 18 | 2.677045 | insertion element IS1 protein InsA | |
| SDY_0500 | 0 | 19 | 3.154412 | insertion element iso-IS1d protein InsB | |
| SDY_0501 | 0 | 18 | 3.037657 | delta-aminolevulinic acid dehydratase | |
| SDY_0502 | 0 | 22 | 3.233923 | taurine dioxygenase | |
| SDY_0503 | 2 | 21 | 3.277011 | taurine transporter subunit | |
| SDY_0504 | 2 | 17 | 1.315763 | taurine ABC transporter ATP-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0495a | HOKGEFTOXIC | 56 | 4e-15 | Hok/Gef cell toxic protein family signature. | |
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0497 | PRTACTNFAMLY | 30 | 0.016 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0498 | PRTACTNFAMLY | 80 | 2e-19 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0501 | BINARYTOXINB | 30 | 0.019 | Binary toxin B family signature. | |
>BINARYTOXINB#Binary toxin B family signature. | |||||
| 7 | SDY_0518 | SDY_0535 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0518 | 2 | 15 | 2.677045 | ferric enterobactin transport protein FepE | |
| SDY_0519 | 1 | 16 | 4.850151 | iron-enterobactin ABC transporter ATP-binding | |
| SDY_0520 | 0 | 16 | 4.895619 | iron-enterobactin ABC transporter permease | |
| SDY_0521 | 0 | 16 | 4.346534 | iron-enterobactin ABC transporter permease | |
| SDY_0522 | -1 | 16 | 3.882038 | enterobactin exporter EntS | |
| SDY_0523 | -2 | 16 | 3.686980 | iron-enterobactin ABC transporter | |
| SDY_0524 | -2 | 18 | 3.695705 | isochorismate hydroxymutase | |
| SDY_0525 | -1 | 19 | 3.548623 | enterobactin synthase subunit E | |
| SDY_0526 | 0 | 18 | 2.006240 | 2,3-dihydro-2,3-dihydroxybenzoate synthetase | |
| SDY_0527 | 1 | 19 | 1.279363 | 2,3-dihydroxybenzoate-2,3-dehydrogenase | |
| SDY_0528 | -1 | 19 | -0.000104 | hypothetical protein | |
| SDY_0530 | -2 | 21 | -1.287821 | hypothetical protein | |
| SDY_0531 | -2 | 20 | -1.379059 | hypothetical protein | |
| SDY_0534 | 0 | 24 | -3.008358 | hypothetical protein | |
| SDY_0535 | 2 | 22 | -2.187275 | insertion sequence element IS600 transposase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0522 | TCRTETA | 33 | 0.002 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0523 | FERRIBNDNGPP | 63 | 1e-13 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0526 | ISCHRISMTASE | 440 | e-159 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0527 | DHBDHDRGNASE | 363 | e-130 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 8 | SDY_0568 | SDY_0594 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0568 | 1 | 24 | -3.483790 | hypothetical protein | |
| SDY_0569 | 0 | 20 | -2.295101 | insertion element iso-IS1d protein InsB | |
| SDY_0570 | 1 | 21 | -2.847923 | insertion element IS1 protein InsA | |
| SDY_0572a | 2 | 21 | -4.168086 | insertion element iso-IS1N protein InsA | |
| SDY_0577 | 2 | 24 | -4.796558 | ****bacteriophage protein | |
| SDY_0578 | 2 | 27 | -4.915152 | hypothetical protein | |
| SDY_0579 | 2 | 30 | -5.606824 | bacteriophage protein | |
| SDY_0580 | 3 | 26 | -3.551278 | hypothetical protein | |
| SDY_0581 | 1 | 22 | -3.539392 | hypothetical protein | |
| SDY_0582 | 2 | 23 | -2.744490 | hypothetical protein | |
| SDY_0585 | 2 | 23 | -1.873719 | insertion sequence element IS600 transposase | |
| SDY_0586 | 2 | 18 | -1.897913 | insertion sequence element IS911 transposase | |
| SDY_0587 | -1 | 14 | -0.144448 | insertion sequence element IS911 integrase core | |
| SDY_0588 | 0 | 14 | -0.659568 | glutamate/aspartate ABC transporter permease | |
| SDY_0590 | 1 | 13 | -0.455562 | insertion sequence element IS600 transposase | |
| SDY_0591 | 1 | 14 | 0.242518 | insertion sequence element IS600 integrase core | |
| SDY_0592 | 1 | 17 | 0.624676 | glutamate/aspartate ABC transporter | |
| SDY_0593 | 1 | 16 | 1.896678 | apolipoprotein N-acyltransferase | |
| SDY_0594 | 2 | 16 | 1.308560 | transport protein |
| 9 | SDY_0619 | SDY_0636 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0619 | 2 | 20 | -2.120380 | insertion element iso-IS1d protein InsA | |
| SDY_0623 | 0 | 21 | -0.391130 | ferric uptake regulator | |
| SDY_0624 | 0 | 17 | 0.646738 | flavodoxin FldA | |
| SDY_0625 | 0 | 17 | 1.298017 | LexA regulated protein | |
| SDY_0626 | -1 | 16 | 1.192843 | hypothetical protein | |
| SDY_0627 | -2 | 15 | 1.589679 | replication initiation regulator SeqA | |
| SDY_0628 | 1 | 23 | 6.341928 | phosphoglucomutase | |
| SDY_0629 | 2 | 27 | 7.010749 | DNA-binding transcriptional activator KdpE | |
| SDY_0631 | 4 | 29 | 6.936822 | potassium-transporting ATPase subunit C | |
| SDY_0634 | 4 | 31 | 6.935837 | potassium ion accessory transporter KdpF | |
| SDY_0635 | 3 | 30 | 6.634103 | hypothetical protein | |
| SDY_0636 | 3 | 28 | 6.130377 | rhs element protein RhsC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0629 | HTHFIS | 91 | 1e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 10 | SDY_0675 | SDY_0687 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0675 | 2 | 19 | 0.010075 | glutamate mutase L | |
| SDY_0676 | 3 | 21 | -0.260117 | methylaspartate mutase subunit S | |
| SDY_0676a | 3 | 21 | -0.016112 | insertion element iso-IS1N protein InsA | |
| SDY_0680 | 1 | 20 | -0.273154 | cytochrome d terminal oxidase polypeptide | |
| SDY_0681 | 1 | 17 | -0.717175 | cytochrome d terminal oxidase polypeptide | |
| SDY_0682 | 7 | 18 | -1.281663 | outer membrane lipoprotein | |
| SDY_0683 | 3 | 18 | -0.601460 | hypothetical protein | |
| SDY_0684 | 3 | 21 | -0.514833 | acyl-CoA thioester hydrolase | |
| SDY_0685 | 3 | 20 | -0.647739 | colicin uptake protein TolQ | |
| SDY_0686 | 4 | 20 | -0.713360 | colicin uptake protein TolR | |
| SDY_0687 | 3 | 18 | -1.091046 | cell envelope integrity inner membrane protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0675 | PF03309 | 33 | 0.002 | Bvg accessory factor | |
>PF03309#Bvg accessory factor | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0687 | IGASERPTASE | 60 | 8e-12 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 11 | SDY_0715 | SDY_0729 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0715 | 5 | 31 | -4.836231 | insertion sequence element IS600 transposase | |
| SDY_0716 | 2 | 27 | -3.544285 | insertion element iso-IS1n protein InsB | |
| SDY_0718a | 2 | 31 | -3.341871 | insertion element iso-IS1N protein InsA | |
| SDY_0720 | 2 | 27 | -3.766472 | insertion sequence element IS911 transposase | |
| SDY_0722 | 2 | 27 | -2.937631 | insertion sequence element IS911 transposase | |
| SDY_0723 | 2 | 27 | -2.754758 | insertion sequence element IS600 transposase | |
| SDY_0724 | 2 | 27 | -1.453173 | insertion sequence element IS600 integrase core | |
| SDY_0725 | 2 | 26 | -1.270045 | bacteriophage protein | |
| SDY_0726 | 2 | 26 | -1.340167 | bacteriophage protein | |
| SDY_0727 | 2 | 27 | -0.443742 | insertion sequence element IS600 integrase core | |
| SDY_0728 | 1 | 26 | -0.144999 | insertion sequence element IS600 transposase | |
| SDY_0729 | 2 | 25 | 0.679432 | insertion element IS2 transposase InsD |
| 12 | SDY_0828 | SDY_0845 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0828 | 2 | 15 | 3.523447 | dithiobiotin synthetase | |
| SDY_0829 | 2 | 14 | 2.090649 | biotin biosynthesis protein BioC | |
| SDY_0830 | 1 | 14 | 1.421644 | 8-amino-7-oxononanoate synthase | |
| SDY_0831 | 1 | 16 | 0.225985 | biotin synthase | |
| SDY_0832 | 1 | 19 | -0.303863 | adenosylmethionine-8-amino-7-oxononanoate | |
| SDY_0833 | 3 | 24 | -1.717977 | kinase inhibitor protein | |
| SDY_0834 | 5 | 26 | -1.930845 | invasion plasmid antigen | |
| SDY_0835 | 0 | 17 | -1.280519 | insertion sequence element IS600 transposase | |
| SDY_0836 | -1 | 13 | -1.102538 | insertion sequence element IS600 integrase core | |
| SDY_0838 | -1 | 11 | -1.051500 | transferase | |
| SDY_0839 | 0 | 10 | -1.750558 | insertion element iso-IS1n protein InsB | |
| SDY_0839a | -1 | 13 | -1.057960 | insertion element iso-IS1N protein InsA | |
| SDY_0841 | -2 | 16 | -0.904244 | D-alanyl-D-alanine carboxypeptidase | |
| SDY_0842 | -1 | 15 | -0.759451 | DNA-binding transcriptional repressor DeoR | |
| SDY_0843 | 2 | 20 | -0.902256 | undecaprenyl pyrophosphate phosphatase | |
| SDY_0845 | 3 | 28 | -1.145512 | insertion sequence element IS911 transposase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0841 | BLACTAMASEA | 46 | 1e-07 | Beta-lactamase class A signature. | |
>BLACTAMASEA#Beta-lactamase class A signature. | |||||
| 13 | SDY_0868 | SDY_0878 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0868 | 0 | 17 | 3.424460 | insertion sequence element IS600 transposase | |
| SDY_0870 | -1 | 19 | 3.957140 | ferredoxin-type protein | |
| SDY_0871 | -1 | 20 | 3.457104 | assembly protein for periplasmic nitrate | |
| SDY_0872 | -1 | 17 | 3.446775 | nitrate reductase catalytic subunit | |
| SDY_0873 | -1 | 16 | 3.059142 | quinol dehydrogenase periplasmic subunit | |
| SDY_0874 | 0 | 14 | 2.289939 | quinol dehydrogenase membrane subunit | |
| SDY_0875 | 1 | 16 | 2.149994 | citrate reductase cytochrome c-type subunit | |
| SDY_0876 | 0 | 15 | 1.837409 | cytochrome c-type protein NapC | |
| SDY_0877 | 0 | 17 | 3.411020 | cytochrome c biogenesis protein CcmA | |
| SDY_0878 | 1 | 20 | 3.312223 | heme exporter protein B |
| 14 | SDY_0910 | SDY_0915 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0910 | 2 | 22 | -2.671951 | insertion element iso-IS1n protein InsB | |
| SDY_0912a | 2 | 25 | -2.989571 | insertion element iso-IS1N protein InsA | |
| SDY_0912 | 1 | 25 | -3.412842 | hypothetical protein | |
| SDY_0913a | 0 | 26 | -3.086670 | insertion element iso-IS1N protein InsA | |
| SDY_0913 | 0 | 22 | -3.929940 | insertion element iso-IS1n protein InsB | |
| SDY_0914 | 0 | 23 | -3.880704 | FimH-like protein | |
| SDY_0915 | 0 | 22 | -3.534096 | fimbrial-like protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0912 | PF00577 | 236 | 5e-74 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0914 | CLENTEROTOXN | 32 | 0.004 | Clostridium enterotoxin signature. | |
>CLENTEROTOXN#Clostridium enterotoxin signature. | |||||
| 15 | SDY_0978 | SDY_1042 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0978 | 2 | 15 | 1.071562 | glucose-1-phosphatase/inositol phosphatase | |
| SDY_0979 | 1 | 17 | 2.054022 | hypothetical protein | |
| SDY_0980 | 1 | 17 | 3.127570 | TrpR binding protein WrbA | |
| SDY_0980a | 0 | 16 | 3.277604 | hypothetical protein | |
| SDY_0981 | -1 | 16 | 3.160308 | transport protein | |
| SDY_0982 | 0 | 16 | 2.896959 | hypothetical protein | |
| SDY_0983 | 0 | 15 | 2.125397 | hypothetical protein | |
| SDY_0984 | -1 | 15 | 1.880031 | acetyltransferase | |
| SDY_0985 | -1 | 15 | 1.259728 | hypothetical protein | |
| SDY_0987 | -1 | 15 | 1.025966 | hypothetical protein | |
| SDY_0988 | 0 | 18 | -0.497979 | tet operon regulator | |
| SDY_0990 | 0 | 16 | -1.511471 | major sodium/proline symporter | |
| SDY_0993 | 1 | 21 | -3.527675 | insertion element IS1 protein InsA | |
| SDY_0994 | 1 | 23 | -3.626508 | insertion element iso-IS1d protein InsB | |
| SDY_0995a | 3 | 21 | -3.811251 | insertion element iso-IS1N protein InsA | |
| SDY_0997 | 2 | 17 | -2.991030 | curli assembly protein CsgE | |
| SDY_0998 | 0 | 15 | -1.347842 | curli assembly protein CsgF | |
| SDY_0999 | 0 | 13 | -0.980554 | curli production assembly/transport protein | |
| SDY_0999a | 0 | 16 | -1.008876 | insertion element iso-IS1N protein InsA | |
| SDY_1000 | 1 | 17 | -1.964389 | insertion element iso-IS1n protein InsB | |
| SDY_1001 | 3 | 18 | -2.203688 | hypothetical protein | |
| SDY_1002 | 2 | 18 | -2.280587 | oxidoreductase | |
| SDY_1003 | 3 | 19 | -2.359451 | hydrolase | |
| SDY_1004 | 4 | 23 | -1.103324 | dehydrogenase | |
| SDY_1006 | 8 | 26 | 0.182344 | *hypothetical protein | |
| SDY_1007 | 7 | 26 | 2.445744 | hypothetical protein | |
| SDY_1008 | 7 | 26 | 3.040159 | hypothetical protein | |
| SDY_1009 | 9 | 28 | 2.852462 | hypothetical protein | |
| SDY_1010 | 9 | 29 | 3.250464 | structural protein | |
| SDY_1011 | 8 | 27 | 2.349221 | hypothetical protein | |
| SDY_1012 | 7 | 24 | -0.539631 | hypothetical protein | |
| SDY_1013 | 5 | 22 | -0.592667 | radC-like protein YeeS | |
| SDY_1014 | 4 | 23 | -0.293979 | hypothetical protein | |
| SDY_1015 | 3 | 24 | -0.356180 | hypothetical protein | |
| SDY_1016 | 1 | 25 | -1.511471 | hypothetical protein | |
| SDY_1017 | 1 | 24 | -1.221690 | hypothetical protein | |
| SDY_1018 | 3 | 19 | -0.767351 | insertion sequence element IS600 integrase core | |
| SDY_1019 | 3 | 18 | -0.763706 | insertion element IS2 transposase InsD | |
| SDY_1020 | 2 | 15 | -0.211303 | insertion sequence element IS2 repressor TnpA | |
| SDY_1021 | 1 | 15 | 2.172410 | insertion element iso-IS1n protein InsB | |
| SDY_1021a | 1 | 16 | 2.441909 | insertion element iso-IS1N protein InsA | |
| SDY_1022 | 1 | 16 | 2.246648 | outer membrane receptor FepA | |
| SDY_1023 | 0 | 17 | 3.513689 | hypothetical protein | |
| SDY_1024 | 1 | 17 | 3.845765 | ferric enterochelin esterase | |
| SDY_1025 | 0 | 16 | 1.961537 | ABC transporter protein | |
| SDY_1026 | 0 | 20 | -3.085377 | glycosyl transferase | |
| SDY_1030 | 1 | 19 | -4.473422 | insertion sequence element IS911 transposase | |
| SDY_1031 | 1 | 18 | -3.744616 | insertion element IS1 protein InsB | |
| SDY_1031a | 1 | 19 | -4.029210 | insertion element iso-IS1N protein InsA | |
| SDY_1033 | 1 | 22 | -4.701300 | hypothetical protein | |
| SDY_1034 | 2 | 24 | -3.575996 | sulfite oxidase subunit YedZ | |
| SDY_1035 | 1 | 23 | -3.015619 | sulfite oxidase subunit YedY | |
| SDY_1036 | 2 | 30 | -4.086567 | insertion element IS1 protein InsB | |
| SDY_1038a | 2 | 31 | -4.486187 | insertion element iso-IS1N protein InsA | |
| SDY_1038 | 0 | 18 | -2.765248 | hypothetical protein | |
| SDY_1039 | 0 | 17 | -1.385606 | transcriptional regulator YedW | |
| SDY_1040 | 1 | 17 | 0.435580 | insertion element iso-IS1n protein InsB | |
| SDY_1042a | 2 | 18 | 0.558926 | insertion element iso-IS1N protein InsA | |
| SDY_1042 | 2 | 18 | 0.666620 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0988 | HTHTETR | 65 | 2e-15 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1018 | TYPE3IMSPROT | 28 | 0.032 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1039 | HTHFIS | 82 | 2e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 16 | SDY_1053 | SDY_1069a | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1053 | 2 | 23 | -0.315426 | hypothetical protein | |
| SDY_1053a | 1 | 23 | -0.351419 | insertion element iso-IS1N protein InsA | |
| SDY_1054 | 2 | 24 | -3.369552 | insertion element IS1 protein InsB | |
| SDY_1055 | 2 | 25 | -3.624431 | insertion element iso-IS1d protein InsB | |
| SDY_1056 | 3 | 27 | -3.878606 | insertion element IS1 protein InsA | |
| SDY_1057 | 3 | 24 | -3.240429 | insertion element iso-IS1n protein InsB | |
| SDY_1057a | 2 | 26 | -4.070761 | insertion element iso-IS1N protein InsA | |
| SDY_1060 | 2 | 24 | -2.835641 | hypothetical protein | |
| SDY_1061a | 1 | 22 | -1.252384 | insertion element iso-IS1N protein InsA | |
| SDY_1061 | 2 | 21 | -1.403428 | insertion element IS1 protein InsB | |
| SDY_1063 | 3 | 24 | -1.981783 | insertion sequence element IS600 integrase core | |
| SDY_1064 | 2 | 24 | -1.905364 | insertion sequence element IS600 transposase | |
| SDY_1065 | 1 | 21 | -1.250514 | tail fiber protein | |
| SDY_1066 | 2 | 20 | -2.162859 | tail fiber assembly protein | |
| SDY_1067 | 2 | 21 | -3.288537 | phage tail fiber protein | |
| SDY_1068 | 2 | 24 | -3.247429 | insertion sequence element IS600 transposase | |
| SDY_1069 | 0 | 19 | -2.036112 | insertion sequence element IS600 integrase core | |
| SDY_1070 | 0 | 23 | -2.789448 | insertion element IS1 protein InsB | |
| SDY_1069a | 0 | 25 | -3.426774 | insertion element iso-IS1N protein InsA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1060 | LUXSPROTEIN | 31 | 0.001 | Bacterial autoinducer-2 (AI-2) production protein Lu... | |
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS | |||||
| 17 | SDY_1151 | SDY_1166 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1151 | 2 | 21 | 2.017546 | hypothetical protein | |
| SDY_1152 | 2 | 19 | 1.645717 | dATP pyrophosphohydrolase | |
| SDY_1153 | 2 | 21 | 1.810152 | aspartyl-tRNA synthetase | |
| SDY_1154 | 1 | 26 | 2.124325 | hypothetical protein | |
| SDY_1155 | 2 | 28 | 2.167827 | insertion element IS110 transposase | |
| SDY_1156 | 1 | 27 | 0.276208 | insertion element IS1 protein InsA | |
| SDY_1158 | 0 | 25 | 0.307216 | insertion sequence element IS911 transposase | |
| SDY_1161 | 1 | 29 | -2.541872 | insertion element IS1 4 protein InsB | |
| SDY_1162 | 1 | 31 | -3.527836 | insertion element IS2 transposase InsD | |
| SDY_1163 | 2 | 31 | -5.859451 | insertion sequence element IS2 repressor TnpA | |
| SDY_1164 | 1 | 22 | -5.635189 | insertion element IS1 protein InsA | |
| SDY_1165 | -1 | 20 | -4.691057 | insertion element iso-IS1n protein InsB | |
| SDY_1166 | -1 | 18 | -3.435016 | hypothetical protein |
| 18 | SDY_1186 | SDY_1210 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1186 | 0 | 21 | -3.038463 | insertion sequence element IS600 transposase | |
| SDY_1187 | -1 | 18 | -2.863807 | insertion sequence element IS600 integrase core | |
| SDY_1189 | -2 | 18 | -2.359451 | flagellar motor protein MotA | |
| SDY_1190 | 0 | 20 | -3.034266 | transcriptional activator FlhC | |
| SDY_1191 | -1 | 20 | -2.624384 | transcriptional activator FlhD | |
| SDY_1192 | 0 | 21 | -2.615861 | universal stress protein UspC | |
| SDY_1193 | 0 | 21 | -2.004301 | trehalose-6-phosphate synthase | |
| SDY_1195 | 2 | 26 | -0.995030 | insertion sequence element IS911 integrase core | |
| SDY_1196 | 1 | 25 | -2.144674 | insertion sequence element IS911 transposase | |
| SDY_1197 | 1 | 23 | -1.087027 | insertion sequence element IS600 integrase core | |
| SDY_1198 | 2 | 27 | -3.001930 | insertion sequence element IS600 transposase | |
| SDY_1199 | 3 | 26 | -2.268177 | insertion element IS1 protein InsA | |
| SDY_1200 | 3 | 26 | -2.322901 | insertion element iso-IS1d protein InsB | |
| SDY_1200a | 4 | 21 | -1.481195 | insertion element iso-IS1N protein InsA | |
| SDY_1201 | 3 | 22 | -1.843987 | insertion element iso-IS1n protein InsB | |
| SDY_1202 | 2 | 20 | -2.061166 | hypothetical protein | |
| SDY_1203 | 0 | 17 | -1.248340 | insertion element IS1 protein InsB | |
| SDY_1203a | 0 | 17 | -1.268181 | insertion element iso-IS1N protein InsA | |
| SDY_1204 | 0 | 17 | -1.288022 | ATPase | |
| SDY_1205 | 0 | 20 | -3.311832 | cell division topological specificity factor | |
| SDY_1206 | 0 | 18 | -3.703256 | cell division inhibitor MinD | |
| SDY_1207 | 0 | 21 | -4.986605 | septum formation inhibitor | |
| SDY_1208 | -2 | 19 | -4.472127 | insertion element iso-IS1n protein InsB | |
| SDY_1208a | -3 | 19 | -5.199885 | insertion element iso-IS1N protein InsA | |
| SDY_1209 | -3 | 20 | -5.050315 | hypothetical protein | |
| SDY_1210 | -2 | 14 | -3.443788 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1189 | PF05844 | 33 | 0.001 | YopD protein | |
>PF05844#YopD protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1202 | PF00577 | 29 | 0.025 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1204 | PRTACTNFAMLY | 241 | 1e-69 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| 19 | SDY_1282 | SDY_1320 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1282 | -2 | 18 | -3.737723 | nitrate reductase 1 cytochrome b(NR) subunit | |
| SDY_1284 | -1 | 27 | -5.730369 | *formyltetrahydrofolate deformylase | |
| SDY_1285 | 0 | 27 | -5.404070 | hypothetical protein | |
| SDY_1287 | -1 | 19 | -3.552316 | response regulator of RpoS | |
| SDY_1288 | -1 | 19 | -3.360252 | UTP-glucose-1-phosphate uridylyltransferase | |
| SDY_1289 | 1 | 28 | -2.051145 | global DNA-binding transcriptional dual | |
| SDY_1290 | 2 | 25 | -1.735963 | thymidine kinase | |
| SDY_1291 | 2 | 27 | -0.680165 | insertion element iso-IS1n protein InsB | |
| SDY_1292 | 3 | 29 | -0.640111 | insertion sequence element IS4 transposase InsG | |
| SDY_1293 | 2 | 35 | -0.991030 | insertion element IS1 protein InsA | |
| SDY_1295 | 2 | 33 | -0.960134 | bifunctional acetaldehyde-CoA/alcohol | |
| SDY_1294a | 1 | 24 | -0.351419 | insertion element iso-IS1N protein InsA | |
| SDY_1296 | 1 | 14 | -2.225163 | insertion element iso-IS1n protein InsB | |
| SDY_1297 | 2 | 14 | -3.391443 | insertion element IS1 protein InsA | |
| SDY_1298 | 1 | 11 | -2.747564 | insertion element iso-IS1d protein InsB | |
| SDY_1299 | 0 | 11 | -2.602405 | insertion element IS1 protein InsB | |
| SDY_1301a | 0 | 12 | -2.376830 | insertion element iso-IS1N protein InsA | |
| SDY_1301 | 0 | 12 | -2.557352 | hypothetical protein | |
| SDY_1302 | 1 | 14 | -1.597040 | oligopeptide transporter permease | |
| SDY_1303 | 0 | 15 | -2.618952 | hypothetical protein | |
| SDY_1304 | 0 | 18 | -3.189520 | oligopeptide ABC transporter ATP-binding | |
| SDY_1305 | 0 | 21 | -3.515827 | hypothetical protein | |
| SDY_1306 | -1 | 22 | -2.915370 | dsDNA-mimic protein | |
| SDY_1307 | -2 | 25 | -3.160033 | cardiolipin synthetase | |
| SDY_1308 | 0 | 28 | -4.454767 | voltage-gated potassium channel | |
| SDY_1309 | 1 | 28 | -0.675139 | hypothetical protein | |
| SDY_1310 | 1 | 27 | -0.852772 | insertion sequence element IS2 repressor TnpA | |
| SDY_1311 | 0 | 24 | -1.843683 | insertion element IS2 transposase InsD | |
| SDY_1312 | 1 | 21 | -3.341649 | DNA invertase-like protein | |
| SDY_1313 | 1 | 17 | -2.703248 | insertion sequence element IS911 transposase | |
| SDY_1316 | 1 | 20 | -3.485577 | transporter | |
| SDY_1317 | 2 | 22 | -4.547353 | acyl-CoA thioester hydrolase | |
| SDY_1318 | 2 | 18 | -3.930556 | intracellular septation protein A | |
| SDY_1319 | 2 | 21 | -3.281437 | hypothetical protein | |
| SDY_1320 | -1 | 22 | -3.851675 | outer membrane protein W |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1285 | SECA | 54 | 2e-11 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1287 | HTHFIS | 90 | 7e-22 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1305 | HTHFIS | 31 | 0.008 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1309 | adhesinmafb | 31 | 5e-04 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1316 | TONBPROTEIN | 255 | 2e-88 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
| 20 | SDY_1380 | SDY_1392 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1380 | 3 | 23 | -2.505533 | integrase | |
| SDY_1381 | 2 | 23 | -1.513785 | insertion element IS1 protein InsA | |
| SDY_1382 | 3 | 27 | -4.125833 | exonuclease | |
| SDY_1383 | 3 | 32 | -5.731507 | recombination protein Bet | |
| SDY_1384 | 2 | 29 | -4.679527 | host-nuclease inhibitor protein Gam | |
| SDY_1385 | 3 | 30 | -4.147225 | hypothetical protein | |
| SDY_1386 | 4 | 31 | -4.430457 | insertion sequence element IS600 transposase | |
| SDY_1389 | 4 | 30 | -3.537431 | Shiga toxin subunit A | |
| SDY_1390 | 3 | 24 | -0.696374 | Shiga toxin subunit B | |
| SDY_1391 | 4 | 22 | 0.185352 | hypothetical protein | |
| SDY_1392 | 4 | 28 | 1.675240 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1389 | SHIGARICIN | 120 | 3e-34 | Ribosome inactivating protein family signature. | |
>SHIGARICIN#Ribosome inactivating protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1390 | FLGMOTORFLIM | 26 | 0.024 | Flagellar motor switch protein FliM signature. | |
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. | |||||
| 21 | SDY_1405 | SDY_1410 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1405 | -1 | 18 | -3.663350 | insertion element iso-IS1n protein InsB | |
| SDY_1407a | 0 | 19 | -5.120595 | insertion element iso-IS1N protein InsA | |
| SDY_1408a | 0 | 19 | -4.765173 | insertion element iso-IS1N protein InsA | |
| SDY_1407 | 0 | 20 | -4.709462 | insertion element iso-IS1n protein InsB | |
| SDY_1408 | 0 | 20 | -4.563627 | LysR family transcriptional regulator | |
| SDY_1409 | 0 | 14 | -3.859023 | transport periplasmic protein | |
| SDY_1410 | -1 | 13 | -3.387884 | hypothetical protein |
| 22 | SDY_1436 | SDY_1454 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1436 | 2 | 19 | -1.679179 | antitermination protein Q | |
| SDY_1439 | 0 | 20 | -1.732064 | **insertion element IS1 protein InsA | |
| SDY_1440 | 0 | 20 | -1.617003 | insertion element iso-IS1d protein InsB | |
| SDY_1440a | 2 | 20 | -2.305338 | insertion element iso-IS1N protein InsA | |
| SDY_1442 | 3 | 17 | -2.084423 | insertion element iso-IS1n protein InsB | |
| SDY_1443 | 3 | 20 | -1.800167 | hypothetical protein | |
| SDY_1444 | 0 | 23 | 0.234035 | insertion sequence element IS600 transposase | |
| SDY_1446 | 3 | 24 | 1.140549 | insertion element IS1 protein InsB | |
| SDY_1466a | 3 | 25 | 0.791234 | insertion element iso-IS1N protein InsA | |
| SDY_1448 | 2 | 25 | 0.163072 | hypothetical protein | |
| SDY_1449 | 2 | 25 | -0.825059 | insertion sequence element IS2 repressor TnpA | |
| SDY_1450 | 1 | 20 | -0.931738 | insertion element IS2 transposase InsD | |
| SDY_1450a | 1 | 20 | -1.974717 | phage lysis protein | |
| SDY_1451a | 1 | 21 | -2.739390 | prophage protein | |
| SDY_1452 | 1 | 22 | -2.909931 | insertion sequence element IS600 transposase | |
| SDY_1454 | 2 | 21 | -2.359451 | iron ABC transporter permease |
| 23 | SDY_1468a | SDY_1498 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1468a | 0 | 25 | -3.200797 | insertion element iso-IS1N protein InsA | |
| SDY_1468 | 0 | 27 | -3.027645 | insertion element IS1 protein InsB | |
| SDY_1469 | 0 | 25 | -3.240861 | insertion element IS1 protein InsA | |
| SDY_1470 | -1 | 20 | -3.114738 | insertion element iso-IS1d protein InsB | |
| SDY_1471 | 0 | 20 | -4.233557 | hypothetical protein | |
| SDY_1472 | 1 | 18 | -3.865953 | hypothetical protein | |
| SDY_1473 | 0 | 17 | -2.732984 | insertion element iso-IS1n protein InsB | |
| SDY_1469a | 1 | 21 | -3.785959 | insertion element iso-IS1N protein InsA | |
| SDY_1474 | 1 | 17 | -3.298908 | 3-dehydroquinate dehydratase | |
| SDY_1475 | 1 | 20 | -3.509597 | quinate/shikimate dehydrogenase | |
| SDY_1476 | 1 | 23 | -2.915007 | insertion element iso-IS1n protein InsB | |
| SDY_1476a | 0 | 26 | -2.628268 | insertion element iso-IS1N protein InsA | |
| SDY_1477 | 2 | 23 | -4.995299 | hypothetical protein | |
| SDY_1478 | 3 | 20 | -3.715113 | insertion element iso-IS1d protein InsB | |
| SDY_1479 | 4 | 24 | -4.419376 | insertion element IS1 protein InsA | |
| SDY_1481 | 5 | 19 | -3.646855 | insertion sequence element IS600 transposase | |
| SDY_1482 | 4 | 18 | -3.016769 | insertion element IS1 protein InsA | |
| SDY_1483 | 2 | 16 | -3.062634 | transport system permease | |
| SDY_1484 | 1 | 23 | -1.664007 | insertion element IS1 protein InsB | |
| SDY_1482a | 1 | 23 | -2.049040 | insertion element iso-IS1N protein InsA | |
| SDY_1485 | 0 | 22 | -2.489382 | hypothetical protein | |
| SDY_1486 | -1 | 19 | -2.852548 | aldehyde reductase | |
| SDY_1487 | -1 | 16 | -3.096045 | hypothetical protein | |
| SDY_1488 | 0 | 17 | -3.659278 | glyceraldehyde-3-phosphate dehydrogenase | |
| SDY_1489 | 1 | 20 | -3.756724 | methionine sulfoxide reductase B | |
| SDY_1490 | 1 | 21 | -3.953839 | hypothetical protein | |
| SDY_1491 | 0 | 22 | -4.604349 | oxidoreductase | |
| SDY_1492 | 0 | 23 | -4.951020 | transport protein | |
| SDY_1493 | -1 | 22 | -5.402392 | oxidoreductase | |
| SDY_1494 | -1 | 20 | -4.334902 | insertion element IS1 protein InsA | |
| SDY_1495 | -1 | 17 | -4.137962 | kinase | |
| SDY_1498 | 0 | 18 | -3.484716 | DeoR-type transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1469a | ACRIFLAVINRP | 27 | 0.007 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1487 | INVEPROTEIN | 30 | 0.016 | Salmonella/Shigella invasion protein E (InvE) signat... | |
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1492 | TCRTETB | 31 | 0.011 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 24 | SDY_1552 | SDY_1597 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1552 | 2 | 24 | -2.343502 | transport protein | |
| SDY_1553 | 2 | 24 | -1.875189 | multidrug efflux system protein MdtJ | |
| SDY_1554 | 1 | 22 | -0.363443 | multidrug efflux system protein MdtI | |
| SDY_1555 | -1 | 17 | -0.242438 | hypothetical protein | |
| SDY_1556 | 0 | 14 | -0.198221 | acid shock protein | |
| SDY_1556a | 0 | 11 | 0.307216 | insertion element iso-IS1N protein InsA | |
| SDY_1560 | 0 | 13 | 0.353295 | insertion element iso-IS1d protein InsB | |
| SDY_1561 | 0 | 14 | 0.273064 | LysR family transcriptional regulator | |
| SDY_1562 | 2 | 14 | 0.378926 | NAGC-like transcriptional regulator | |
| SDY_1563 | 1 | 17 | -0.848281 | dithiobiotin synthetase | |
| SDY_1564 | 1 | 19 | -1.441009 | voltage-gated ClC-type chloride channel ClcB | |
| SDY_1566 | 0 | 20 | -2.790200 | DMSO reductase anchor subunit | |
| SDY_1567 | -1 | 21 | -3.395012 | oxidoreductase Fe-S subunit | |
| SDY_1570 | -1 | 23 | -4.089631 | hypothetical protein | |
| SDY_1571 | -1 | 21 | -4.348841 | hypothetical protein | |
| SDY_1572 | 2 | 23 | -2.179687 | hypothetical protein | |
| SDY_1572a | 3 | 25 | -1.088898 | insertion element iso-IS1N protein InsA | |
| SDY_1574 | 2 | 16 | -3.154680 | insertion element IS1 protein InsB | |
| SDY_1576 | 1 | 17 | -3.314865 | hypothetical protein | |
| SDY_1577 | 0 | 16 | -3.321293 | hypothetical protein | |
| SDY_1580 | 0 | 16 | -3.180949 | insertion element iso-IS1n protein InsB | |
| SDY_1580a | 1 | 21 | -3.055883 | insertion element iso-IS1N protein InsA | |
| SDY_1582 | 0 | 21 | -3.097559 | transport protein | |
| SDY_1584 | 1 | 21 | -2.468241 | hypothetical protein | |
| SDY_1585 | 1 | 23 | -3.447848 | hypothetical protein | |
| SDY_1586 | 1 | 23 | -3.447300 | 3-hydroxy acid dehydrogenase | |
| SDY_1587 | 1 | 22 | -3.281059 | dipeptidyl carboxypeptidase II | |
| SDY_1588 | 0 | 18 | -3.443127 | competence damage-inducible protein A | |
| SDY_1589 | 0 | 17 | -3.303316 | hypothetical protein | |
| SDY_1590 | 0 | 17 | -3.492137 | hypothetical protein | |
| SDY_1591 | 0 | 15 | -2.513902 | insertion element IS1 protein InsA | |
| SDY_1592 | 0 | 16 | -2.625207 | insertion element iso-IS1d protein InsB | |
| SDY_1593 | 2 | 19 | -2.748052 | MFS-type transporter YdeE | |
| SDY_1594 | 2 | 20 | -2.803357 | O-acetylserine/cysteine export protein | |
| SDY_1596 | 1 | 18 | -2.655125 | DNA-binding transcriptional activator MarA | |
| SDY_1597 | 2 | 18 | -2.184296 | DNA-binding transcriptional repressor MarR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1555 | V8PROTEASE | 133 | 2e-39 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1556 | IGASERPTASE | 27 | 0.021 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1582 | TCRTETB | 47 | 1e-07 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1586 | DHBDHDRGNASE | 100 | 9e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1593 | TCRTETA | 43 | 2e-06 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 25 | SDY_1654 | SDY_1695 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1654 | -1 | 24 | -4.897174 | hypothetical protein | |
| SDY_1654a | 1 | 28 | -5.884478 | insertion element iso-IS1N protein InsA | |
| SDY_1657 | 1 | 27 | -5.659576 | adhesin | |
| SDY_1658 | 0 | 24 | -4.999378 | oxidoreductase | |
| SDY_1659 | -2 | 22 | -7.969607 | hypothetical protein | |
| SDY_1660 | -2 | 22 | -6.789328 | transcriptional regulator YdeO | |
| SDY_1661 | 0 | 20 | -3.179892 | hypothetical protein | |
| SDY_1662 | 2 | 24 | -4.474255 | insertion element IS1 protein InsB | |
| SDY_1661a | 1 | 20 | -0.871624 | insertion element iso-IS1N protein InsA | |
| SDY_1663 | 2 | 22 | -0.993710 | hypothetical protein | |
| SDY_1667a | 2 | 24 | -0.852729 | insertion element iso-IS1N protein InsA | |
| SDY_1667 | 3 | 24 | -1.234422 | insertion element iso-IS1n protein InsB | |
| SDY_1668 | 3 | 25 | -1.319229 | hypothetical protein | |
| SDY_1669 | 0 | 17 | 0.550827 | hypothetical protein | |
| SDY_1670 | -2 | 16 | 0.086032 | hypothetical protein | |
| SDY_1672 | -1 | 17 | 0.105273 | insertion sequence element IS600 transposase | |
| SDY_1673 | -2 | 16 | -0.120376 | hypothetical protein | |
| SDY_1674 | -1 | 15 | 0.218233 | hypothetical protein | |
| SDY_1675 | -1 | 14 | 0.246412 | oxidase | |
| SDY_1676 | 1 | 17 | -1.833135 | inner membrane protein | |
| SDY_1678 | 1 | 22 | -4.100745 | insertion sequence element IS600 transposase | |
| SDY_1679 | 0 | 20 | -4.678292 | hypothetical protein | |
| SDY_1680 | 0 | 20 | -3.364017 | insertion element iso-IS1n protein InsB | |
| SDY_1682a | 0 | 26 | -4.182769 | insertion element iso-IS1N protein InsA | |
| SDY_1682 | 0 | 24 | -3.231681 | hypothetical protein | |
| SDY_1682b | -2 | 24 | -2.398483 | insertion element iso-IS1N protein InsA | |
| SDY_1684 | 0 | 24 | -1.682413 | hypothetical protein | |
| SDY_1685 | 0 | 23 | -0.705727 | hypothetical protein | |
| SDY_1686 | 1 | 23 | -0.593652 | hypothetical protein | |
| SDY_1687 | 0 | 23 | -1.744794 | hypothetical protein | |
| SDY_1688 | 0 | 22 | -2.012478 | AraC family transcriptional regulator | |
| SDY_1689 | 0 | 20 | -1.891131 | amino acid/amine transport protein | |
| SDY_1690 | -1 | 20 | -3.082477 | hypothetical protein | |
| SDY_1691 | -1 | 19 | -3.813055 | hypothetical protein | |
| SDY_1692 | -1 | 20 | -4.117861 | hypothetical protein | |
| SDY_1693 | 1 | 18 | -4.311832 | insertion element iso-IS1n protein InsB | |
| SDY_1695a | 1 | 18 | -4.407070 | insertion element iso-IS1N protein InsA | |
| SDY_1695 | 1 | 18 | -4.454689 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1663 | ECOLIPORIN | 143 | 2e-45 | E.coli/Salmonella-type porin signature. | |
>ECOLIPORIN#E.coli/Salmonella-type porin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1669 | IGASERPTASE | 32 | 0.011 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1682 | TCRTETA | 26 | 0.038 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1687 | PRTACTNFAMLY | 29 | 0.009 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1695a | ACRIFLAVINRP | 27 | 0.007 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1695 | HTHTETR | 30 | 6e-04 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 26 | SDY_1761 | SDY_1768 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1761 | 1 | 20 | -3.362161 | insertion element iso-IS1n protein InsB | |
| SDY_4668 | 1 | 22 | -4.011103 | insertion element iso-IS1N protein InsA | |
| SDY_1762 | 1 | 22 | -3.951043 | hypothetical protein | |
| SDY_1763 | 2 | 25 | -6.676562 | hypothetical protein | |
| SDY_1764 | 0 | 23 | -5.712655 | cytochrome b561 | |
| SDY_1768 | -1 | 24 | -4.725042 | insertion sequence element IS600 transposase |
| 27 | SDY_1966 | SDY_1978 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1966 | 0 | 19 | -3.054723 | hypothetical protein | |
| SDY_1967 | -1 | 15 | -1.951953 | hypothetical protein | |
| SDY_1968 | -2 | 16 | -3.231681 | 23S rRNA methyltransferase | |
| SDY_1969 | 2 | 21 | -4.730585 | cold shock-like protein CspC | |
| SDY_1970 | 0 | 23 | -5.221404 | hypothetical protein | |
| SDY_4680 | -3 | 19 | -4.070656 | insertion element iso-IS1N protein InsA | |
| SDY_1971 | -2 | 20 | -3.299938 | insertion element iso-IS1n protein InsB | |
| SDY_1972 | -2 | 17 | -2.533760 | hypothetical protein | |
| SDY_1973 | -2 | 13 | -2.122657 | hypothetical protein | |
| SDY_1974 | -1 | 13 | -1.689476 | hypothetical protein | |
| SDY_1975 | 0 | 12 | -1.643705 | regulator | |
| SDY_1976 | 0 | 14 | -1.391051 | transport protein | |
| SDY_1977 | 1 | 14 | -1.300298 | heat shock protein HtpX | |
| SDY_1978 | 2 | 15 | -1.779246 | carboxy-terminal protease |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1976 | TCRTETB | 108 | 7e-28 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 28 | SDY_1987 | SDY_2013 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1987 | 2 | 23 | -2.528288 | hypothetical protein | |
| SDY_1988 | 3 | 23 | -2.830261 | hypothetical protein | |
| SDY_1991 | 6 | 26 | -2.880284 | insertion sequence element IS911 transposase | |
| SDY_1992 | 6 | 26 | -2.304172 | insertion sequence element IS911 integrase core | |
| SDY_1993 | 6 | 27 | -3.304631 | hypothetical protein | |
| SDY_1998 | 8 | 32 | -3.862887 | ****hypothetical protein | |
| SDY_1999 | 7 | 31 | -3.643134 | insertion sequence element IS600 transposase | |
| SDY_2001 | 7 | 29 | -3.254166 | invasion plasmid antigen | |
| SDY_4682 | 4 | 26 | -3.028496 | insertion element iso-IS1N protein InsA | |
| SDY_2002 | 4 | 27 | -3.435195 | insertion element IS1 protein InsB | |
| SDY_2003 | 4 | 21 | -2.321885 | invasion plasmid antigen | |
| SDY_2006 | 0 | 13 | -0.169399 | hypothetical protein | |
| SDY_2007 | 0 | 13 | -0.353771 | insertion element iso-IS1n protein InsB | |
| SDY_4683 | 0 | 15 | -0.429236 | insertion element iso-IS1N protein InsA | |
| SDY_2008 | 1 | 17 | -2.341236 | insertion sequence element IS600 transposase | |
| SDY_2011 | 1 | 14 | -2.156364 | 6-phosphogluconolactonase | |
| SDY_2012 | 0 | 17 | -3.097181 | hypothetical protein | |
| SDY_2013 | -1 | 17 | -3.200292 | insertion element iso-IS1n protein InsB |
| 29 | SDY_2061 | SDY_2075 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2061 | 4 | 19 | 0.927561 | 50S ribosomal protein L32 | |
| SDY_2062 | 3 | 17 | 1.049106 | hypothetical protein | |
| SDY_2063 | 1 | 14 | 1.413727 | insertion element IS1 protein InsB | |
| SDY_2065 | 1 | 13 | 1.428428 | 23S rRNA pseudouridylate synthase C | |
| SDY_2066 | 0 | 12 | 1.282845 | hypothetical protein | |
| SDY_2067 | 1 | 13 | 1.637995 | ribonuclease E | |
| SDY_2070 | 2 | 12 | 0.641143 | flagellar rod assembly protein/muramidase FlgJ | |
| SDY_2071 | 3 | 13 | 0.315173 | flagellar basal body P-ring biosynthesis protein | |
| SDY_2072 | 3 | 13 | -0.183187 | flagellar basal body L-ring protein | |
| SDY_2075 | 2 | 14 | -0.386542 | flagellar hook protein FlgE |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2067 | IGASERPTASE | 66 | 6e-13 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2070 | FLGFLGJ | 511 | 0.0 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2071 | FLGPRINGFLGI | 424 | e-151 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2072 | FLGLRINGFLGH | 346 | e-124 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2075 | FLGHOOKAP1 | 41 | 5e-06 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 30 | SDY_2092 | SDY_4689 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2092 | 3 | 23 | -2.400603 | DNA damage-inducible protein I | |
| SDY_2093 | 1 | 20 | -1.933094 | insertion element iso-IS1n protein InsB | |
| SDY_4687 | 1 | 22 | -2.054201 | insertion element iso-IS1N protein InsA | |
| SDY_2095 | 2 | 21 | -3.449465 | biofilm formation regulatory protein BssS | |
| SDY_2096 | 2 | 20 | -2.711210 | N-methyltryptophan oxidase | |
| SDY_2097 | 2 | 21 | -3.925603 | hypothetical protein | |
| SDY_2098 | 1 | 22 | -2.799205 | insertion element IS1 protein InsB | |
| SDY_4688 | 0 | 23 | -1.876897 | insertion element iso-IS1N protein InsA | |
| SDY_2099 | 0 | 16 | -1.733089 | DNA-binding transcriptional activator YeiL | |
| SDY_2100 | 2 | 13 | -0.396515 | insertion element IS1 protein InsB | |
| SDY_4689 | 2 | 13 | -0.332276 | insertion element iso-IS1N protein InsA |
| 31 | SDY_2138 | SDY_2148 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2138 | 2 | 15 | -2.040022 | insertion element IS1 protein InsB | |
| SDY_4692 | 3 | 15 | -2.811712 | insertion element iso-IS1N protein InsA | |
| SDY_2140a | 3 | 13 | -1.567124 | dihydropyrimidine dehydrogenase | |
| SDY_4693 | 3 | 14 | -0.895277 | insertion element iso-IS1N protein InsA | |
| SDY_2141 | 3 | 16 | -1.160410 | insertion element IS1 protein InsB | |
| SDY_2142 | 3 | 16 | -1.160410 | hypothetical protein | |
| SDY_2143 | 1 | 15 | -0.623031 | hypothetical protein | |
| SDY_2144 | 2 | 17 | 0.909385 | cytidine deaminase | |
| SDY_2145 | 3 | 19 | 0.521797 | hypothetical protein | |
| SDY_2146 | 1 | 19 | 0.633680 | hypothetical protein | |
| SDY_2148 | 2 | 17 | 0.557216 | insertion element IS1 protein InsB |
| 32 | SDY_4697 | SDY_2217 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4697 | 1 | 24 | -5.317897 | insertion element iso-IS1N protein InsA | |
| SDY_2202 | 1 | 29 | -6.910692 | insertion element IS1 protein InsB | |
| SDY_2203 | 2 | 39 | -10.257054 | UTP-glucose-1-phosphate uridylyltransferase | |
| SDY_2204 | 5 | 50 | -13.919291 | dTDP-glucose-4,6-dehydratase | |
| SDY_2205 | 7 | 54 | -16.254379 | dTDP-4-dehydrorhamnose reductase | |
| SDY_2206 | 8 | 58 | -19.098424 | glucose-1-phosphate thymidylyltransferase | |
| SDY_2207 | 7 | 48 | -16.484864 | dTDP-4-dehydrorhamnose 3,5-epimerase | |
| SDY_2208 | 6 | 43 | -15.172466 | O-antigen transporter | |
| SDY_2209 | 4 | 36 | -12.930616 | O-antigen polymerase | |
| SDY_2210 | 2 | 24 | -9.915452 | rhamnosyl transferase II | |
| SDY_2211 | 1 | 17 | -6.809536 | rhamnosyl transferase I | |
| SDY_2212 | -1 | 15 | -2.812729 | 6-phosphogluconate dehydrogenase | |
| SDY_2213 | -2 | 14 | -2.318801 | UDP-glucose 6-dehydrogenase | |
| SDY_2214 | -2 | 17 | 0.098545 | O-antigen chain length regulator | |
| SDY_2215 | 0 | 24 | 2.015678 | bifunctional phosphoribosyl-AMP | |
| SDY_2216 | 0 | 21 | 2.973882 | imidazole glycerol phosphate synthase subunit | |
| SDY_2217 | -1 | 21 | 3.096216 | 1-(5-phosphoribosyl)-5-[(5- |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2204 | NUCEPIMERASE | 179 | 1e-55 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2205 | NUCEPIMERASE | 47 | 3e-08 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 33 | SDY_2237 | SDY_2262 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2237 | 2 | 20 | -1.303515 | hypothetical protein | |
| SDY_2238 | 3 | 27 | -1.208746 | insertion element iso-IS1n protein InsB | |
| SDY_2239 | 3 | 31 | -1.734862 | hypothetical protein | |
| SDY_2240 | 2 | 31 | -2.166102 | adenosylcobinamide kinase | |
| SDY_2241 | 1 | 31 | -2.369203 | cobalamin synthase | |
| SDY_2242 | 0 | 32 | -3.028411 | nicotinate-nucleotide--dimethylbenzimidazole | |
| SDY_2243 | 0 | 31 | -3.511213 | hypothetical protein | |
| SDY_2245 | 0 | 29 | -3.172774 | *nitrogen assimilation transcriptional regulator | |
| SDY_2246 | 0 | 27 | -2.835641 | transcriptional regulator Cbl | |
| SDY_2248 | 0 | 23 | -2.275699 | *hypothetical protein | |
| SDY_2249 | -1 | 23 | -2.171689 | hypothetical protein | |
| SDY_2251 | -2 | 22 | -2.321543 | *insertion element IS1 protein InsA | |
| SDY_2252 | -2 | 12 | -1.318404 | insertion element iso-IS1d protein InsB | |
| SDY_2253 | -2 | 14 | -2.359451 | AMP nucleosidase | |
| SDY_2254 | -1 | 14 | -2.438227 | shikimate transporter | |
| SDY_2257 | 1 | 15 | -3.229907 | hypothetical protein | |
| SDY_2258 | 2 | 15 | -3.435063 | plasmid stabilization protein | |
| SDY_2259 | 2 | 15 | -3.375059 | hypothetical protein | |
| SDY_2260 | 3 | 24 | -4.959828 | hypothetical protein | |
| SDY_2261 | 3 | 22 | -3.961752 | lipid kinase | |
| SDY_2262 | 2 | 19 | -3.302324 | galactitol utilization operon repressor |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2237 | FbpA_PF05833 | 29 | 0.006 | Fibronectin-binding protein | |
>FbpA_PF05833#Fibronectin-binding protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2254 | TCRTETB | 32 | 0.005 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2260 | LIPOLPP20 | 26 | 0.024 | LPP20 lipoprotein precursor signature. | |
>LIPOLPP20#LPP20 lipoprotein precursor signature. | |||||
| 34 | SDY_2274 | SDY_2287 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2274 | 2 | 17 | -0.376262 | transcriptional regulator | |
| SDY_2277 | 2 | 18 | -0.274242 | phosphomethylpyrimidine kinase | |
| SDY_2278 | 2 | 17 | -1.198249 | hydroxyethylthiazole kinase | |
| SDY_2279 | 1 | 19 | -2.317992 | hypothetical protein | |
| SDY_2280 | 2 | 23 | -4.050272 | nickel/cobalt efflux protein RcnA | |
| SDY_2281 | 1 | 22 | -3.908828 | hypothetical protein | |
| SDY_4701 | 0 | 22 | -3.716383 | insertion element iso-IS1N protein InsA | |
| SDY_2285 | -1 | 24 | -4.026118 | insertion element iso-IS1n protein InsB | |
| SDY_4702 | -1 | 22 | -4.015080 | insertion element iso-IS1N protein InsA | |
| SDY_2287 | 0 | 19 | -3.280086 | outer membrane protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2287 | PF00577 | 544 | 0.0 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| 35 | SDY_2397 | SDY_2422 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2397 | 0 | 24 | -6.211944 | hypothetical protein | |
| SDY_2398 | 0 | 27 | -6.862818 | insertion element iso-IS1d protein InsA | |
| SDY_2398a | 0 | 25 | -6.486054 | transposase IS1 | |
| SDY_2400 | -1 | 19 | -5.784109 | insertion element iso-IS1n protein InsB | |
| SDY_4707 | -2 | 15 | -5.736768 | insertion element iso-IS1N protein InsA | |
| SDY_2401 | -2 | 13 | -4.468632 | hypothetical protein | |
| SDY_4708 | 0 | 17 | -0.226345 | insertion element iso-IS1N protein InsA | |
| SDY_2402 | 1 | 16 | -0.249903 | insertion element IS1 protein InsB | |
| SDY_2404 | 0 | 14 | -0.667532 | arginine ABC transporter ATP-binding protein | |
| SDY_2405 | 1 | 16 | -0.932510 | arginine ABC transporter substrate-binding | |
| SDY_2406 | 0 | 18 | -1.345455 | arginine ABC transporter permease ArtQ | |
| SDY_2407 | 0 | 20 | -3.312657 | arginine ABC transporter permease ArtM | |
| SDY_2410 | 2 | 29 | -3.874603 | insertion sequence element IS600 integrase core | |
| SDY_2411 | 3 | 29 | -4.782684 | insertion sequence element IS600 transposase | |
| SDY_4709 | 2 | 29 | -3.817588 | insertion element iso-IS1N protein InsA | |
| SDY_2414 | 2 | 30 | -4.207851 | DNA-binding protein Roi of bacteriophage | |
| SDY_2415 | 3 | 35 | -3.910494 | antirepressor protein | |
| SDY_2416 | 2 | 31 | -2.636500 | hypothetical protein | |
| SDY_2417 | 1 | 28 | -2.567958 | recombination protein | |
| SDY_2418 | 1 | 17 | -0.691064 | insertion sequence element IS600 integrase core | |
| SDY_2419 | 0 | 14 | -0.306563 | insertion sequence element IS600 transposase | |
| SDY_2420 | 1 | 18 | 0.466833 | integrase | |
| SDY_2421 | 2 | 22 | 0.779160 | hypothetical protein | |
| SDY_2422 | 2 | 24 | 1.000549 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2398 | HTHTETR | 29 | 0.002 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2404 | PF05272 | 30 | 0.010 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| 36 | SDY_2472 | SDY_2479 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2472 | 0 | 26 | 3.458235 | NADH dehydrogenase subunit N | |
| SDY_2473 | 1 | 26 | 2.778786 | NADH dehydrogenase subunit M | |
| SDY_2474 | 0 | 27 | 3.306353 | NADH dehydrogenase subunit L | |
| SDY_2475 | 0 | 28 | 2.927371 | NADH dehydrogenase subunit K | |
| SDY_2476 | 0 | 27 | 3.040669 | NADH dehydrogenase subunit J | |
| SDY_2477 | 1 | 26 | 3.276314 | NADH dehydrogenase subunit I | |
| SDY_2478 | 0 | 25 | 3.104621 | NADH dehydrogenase subunit H | |
| SDY_2479 | 1 | 23 | 3.147098 | NADH dehydrogenase subunit G |
| 37 | SDY_2551 | SDY_2573 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2551 | 2 | 20 | -1.351067 | transporter | |
| SDY_2553 | 2 | 22 | -0.804977 | *insertion element iso-IS1d protein InsB | |
| SDY_2554 | 1 | 20 | -1.176655 | insertion element IS1 protein InsA | |
| SDY_2555 | 1 | 25 | -3.703946 | insertion element iso-IS1n protein InsB | |
| SDY_2558 | 1 | 29 | -5.121014 | sucrose hydrolase | |
| SDY_2559 | 0 | 30 | -5.964523 | sucrose operon repressor | |
| SDY_2560 | 0 | 29 | -6.587093 | D-serine permease | |
| SDY_2561 | 1 | 28 | -6.273518 | D-serine dehydratase | |
| SDY_2562 | 2 | 30 | -7.519065 | multidrug resistance protein Y | |
| SDY_2563 | 2 | 24 | -4.987241 | multidrug resistance protein K | |
| SDY_4713 | 1 | 26 | -3.413399 | insertion element iso-IS1N protein InsA | |
| SDY_2565 | 2 | 29 | -4.649857 | insertion element IS1 protein InsB | |
| SDY_2567 | 3 | 30 | -5.336390 | insertion element IS1 protein InsB | |
| SDY_4714 | 3 | 32 | -5.675007 | insertion element iso-IS1N protein InsA | |
| SDY_2568 | 3 | 33 | -5.993536 | insertion element IS1 protein InsA | |
| SDY_2569 | 2 | 35 | -6.611748 | hypothetical protein | |
| SDY_2570 | 2 | 34 | -6.434406 | transporter YfdV | |
| SDY_2571 | 1 | 29 | -5.238511 | oxalyl-CoA decarboxylase | |
| SDY_2572 | -1 | 18 | -2.940209 | formyl-coenzyme A transferase | |
| SDY_2573 | 0 | 18 | -3.455572 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2562 | TCRTETB | 121 | 4e-32 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2563 | RTXTOXIND | 79 | 3e-18 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 38 | SDY_2711 | SDY_2724 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2711 | 2 | 14 | 0.064281 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate | |
| SDY_2712 | -1 | 14 | 0.672503 | hypothetical protein | |
| SDY_2713 | 1 | 15 | 0.249708 | hypothetical protein | |
| SDY_2714 | 0 | 14 | 0.168929 | nucleoside diphosphate kinase | |
| SDY_2717 | -1 | 13 | 1.937055 | 3-mercaptopyruvate sulfurtransferase | |
| SDY_2718 | 0 | 15 | 1.960791 | enhanced serine sensitivity protein SseB | |
| SDY_2719 | 0 | 16 | 3.026187 | aminopeptidase | |
| SDY_2720 | 3 | 19 | 2.135708 | hypothetical protein | |
| SDY_2721 | 2 | 23 | 1.971088 | [2FE-2S] ferredoxin, electron carrer protein | |
| SDY_2722 | 2 | 23 | 1.968472 | chaperone protein HscA | |
| SDY_2723 | 2 | 23 | 0.443149 | co-chaperone HscB | |
| SDY_2724 | 2 | 27 | 0.793023 | iron-sulfur cluster assembly protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2718 | STREPKINASE | 29 | 0.015 | Streptococcus streptokinase protein signature. | |
>STREPKINASE#Streptococcus streptokinase protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2722 | SHAPEPROTEIN | 114 | 5e-30 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| 39 | SDY_2750 | SDY_2794 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2750 | 2 | 24 | -3.248802 | hypothetical protein | |
| SDY_2751 | 3 | 26 | -3.618928 | DNA-binding transcriptional regulator | |
| SDY_2752 | 5 | 30 | -4.728528 | DNA-invertase | |
| SDY_2753 | 5 | 30 | -4.769439 | invasion plasmid antigen | |
| SDY_2755 | 2 | 22 | -2.247844 | insertion sequence element IS600 transposase | |
| SDY_4726 | -1 | 18 | -1.461247 | insertion element iso-IS1N protein InsA | |
| SDY_2761 | -1 | 18 | -1.961271 | insertion element IS1 protein InsB | |
| SDY_2762 | -2 | 19 | -2.440078 | hypothetical protein | |
| SDY_2763 | -2 | 18 | -2.277580 | insertion element iso-IS1d protein InsA | |
| SDY_2765 | -2 | 17 | -2.051791 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
| SDY_2766 | -1 | 18 | -2.288830 | bifunctional chorismate mutase/prephenate | |
| SDY_2767 | 0 | 21 | -3.253247 | bifunctional chorismate mutase/prephenate | |
| SDY_2768 | 3 | 28 | -3.014330 | translation inhibitor protein RaiA | |
| SDY_2770 | 4 | 28 | -2.327276 | insertion sequence element IS600 transposase | |
| SDY_2771 | 4 | 29 | -2.263112 | insertion sequence element IS600 integrase core | |
| SDY_2772 | 4 | 26 | -3.014473 | hypothetical protein | |
| SDY_2773 | 2 | 24 | -2.290722 | tail fiber protein | |
| SDY_2774 | 3 | 20 | -1.802098 | insertion sequence element IS2 repressor TnpA | |
| SDY_2776 | 1 | 18 | -1.767622 | insertion element IS1 protein InsB | |
| SDY_2777 | 1 | 18 | -0.671864 | hypothetical protein | |
| SDY_2780 | 0 | 17 | -0.319866 | 50S ribosomal protein L19 | |
| SDY_2781 | 0 | 13 | -0.155925 | tRNA (guanine-N(1)-)-methyltransferase | |
| SDY_2782 | 1 | 15 | -0.595233 | 16S rRNA-processing protein RimM | |
| SDY_2783 | 1 | 14 | -0.630624 | 30S ribosomal protein S16 | |
| SDY_2784 | 2 | 10 | -0.553324 | signal recognition particle protein | |
| SDY_2785 | 2 | 13 | -1.213448 | hypothetical protein | |
| SDY_2786 | 1 | 13 | -1.302049 | hypothetical protein | |
| SDY_2787 | 2 | 17 | -1.900087 | heat shock protein GrpE | |
| SDY_2788 | 1 | 17 | -1.657951 | inorganic polyphosphate/ATP-NAD kinase | |
| SDY_2789 | 1 | 18 | -1.465564 | recombination and repair protein | |
| SDY_2790 | 1 | 20 | -2.287301 | hypothetical protein | |
| SDY_2791 | 1 | 19 | -1.820304 | hypothetical protein | |
| SDY_2792 | 1 | 20 | -0.991560 | hypothetical protein | |
| SDY_2793 | 0 | 19 | -1.071395 | SsrA-binding protein | |
| SDY_2794 | 2 | 21 | -1.086724 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2752 | CHLAMIDIAOM6 | 28 | 0.021 | Chlamydia cysteine-rich outer membrane protein 6 si... | |
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2790 | BLACTAMASEA | 26 | 0.032 | Beta-lactamase class A signature. | |
>BLACTAMASEA#Beta-lactamase class A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2794 | PRTACTNFAMLY | 28 | 0.002 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| 40 | SDY_2838 | SDY_2858 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2838 | 2 | 22 | 0.044655 | outer membrane protein assembly complex subunit | |
| SDY_2839 | 5 | 27 | -0.415772 | insertion sequence element IS4 transposase InsG | |
| SDY_2841 | 4 | 29 | -1.950225 | insertion sequence element ISSfl4 ORF2 | |
| SDY_2842 | 3 | 28 | -2.522317 | insertion sequence element IS600 integrase core | |
| SDY_2843 | 2 | 25 | -3.153102 | insertion sequence element IS600 transposase | |
| SDY_2844a | 1 | 24 | -3.078728 | hypothetical protein | |
| SDY_2845 | 0 | 23 | -2.529326 | insertion sequence element IS911 transposase | |
| SDY_2846 | 1 | 23 | -1.672952 | hypothetical protein | |
| SDY_2847 | 1 | 16 | -1.391709 | insertion element iso-IS1n protein InsB | |
| SDY_4729 | 1 | 14 | -1.081768 | insertion element iso-IS1N protein InsA | |
| SDY_2848 | 0 | 13 | -1.426766 | hypothetical protein | |
| SDY_2849 | 1 | 14 | -0.931738 | insertion element iso-IS1d protein InsB | |
| SDY_2850 | 2 | 17 | -1.143692 | insertion element IS1 protein InsA | |
| SDY_2853 | 4 | 19 | -1.872624 | gamma-aminobutyrate transporter | |
| SDY_2854 | 0 | 19 | -2.479643 | DNA-binding transcriptional regulator CsiR | |
| SDY_2855 | 0 | 21 | -3.564006 | LysM domain/BON superfamily protein | |
| SDY_2856 | 0 | 23 | -3.214152 | hypothetical protein | |
| SDY_2857 | 1 | 23 | -3.937488 | hypothetical protein | |
| SDY_2858 | 0 | 25 | -3.739493 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2844a | HOKGEFTOXIC | 68 | 1e-19 | Hok/Gef cell toxic protein family signature. | |
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. | |||||
| 41 | SDY_4735 | SDY_2995 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4735 | 3 | 24 | -2.565212 | insertion element iso-IS1N protein InsA | |
| SDY_2983 | 2 | 25 | -3.283045 | insertion element iso-IS1n protein InsB | |
| SDY_2986 | 1 | 25 | -2.993969 | insertion element iso-IS1n protein InsB | |
| SDY_4736 | 1 | 28 | -3.117027 | insertion element iso-IS1N protein InsA | |
| SDY_2987 | 2 | 31 | -3.253106 | insertion sequence element IS600 transposase | |
| SDY_2990 | 2 | 32 | -2.328530 | insertion sequence element IS600 transposase | |
| SDY_2992 | 1 | 28 | -1.429269 | hypothetical protein | |
| SDY_2993 | 1 | 30 | -0.875580 | insertion element iso-IS1d protein InsB | |
| SDY_2994 | 2 | 31 | -1.404590 | insertion element IS1 protein InsA | |
| SDY_2995 | 2 | 30 | -1.606340 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2995 | cloacin | 30 | 6e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| 42 | SDY_3091 | SDY_3109 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3091 | -2 | 17 | 3.776536 | insertion element iso-IS1n protein InsB | |
| SDY_4737 | -3 | 16 | 3.732503 | insertion element iso-IS1N protein InsA | |
| SDY_3092 | -3 | 17 | 3.894487 | type II secretion protein GspC | |
| SDY_3093 | -2 | 20 | 4.543249 | type II secretion protein | |
| SDY_3094 | -1 | 18 | 5.005896 | type II secretion protein | |
| SDY_3095 | 0 | 18 | 4.056424 | type II secretion protein | |
| SDY_3096 | 0 | 15 | 3.346494 | type II secretion protein | |
| SDY_3097 | 1 | 15 | 3.549133 | type II secretion protein | |
| SDY_3098 | 2 | 16 | 3.448409 | type II secretion protein | |
| SDY_3099 | -2 | 15 | 1.824046 | type II secretion protein | |
| SDY_3100 | -2 | 13 | 0.572804 | type II secretion protein | |
| SDY_3101 | -1 | 15 | -0.115702 | GspL-like protein | |
| SDY_3104 | -1 | 15 | -1.112660 | *insertion element IS1 protein InsA | |
| SDY_3105 | -1 | 15 | -0.441621 | insertion element iso-IS1d protein InsB | |
| SDY_3107 | -1 | 15 | -0.465339 | ornithine decarboxylase | |
| SDY_3108 | -1 | 15 | -0.764153 | nucleosides transporter | |
| SDY_3109 | 2 | 16 | -0.074215 | murein transglycosylase C |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3092 | BCTERIALGSPC | 109 | 2e-30 | Bacterial general secretion pathway protein C signa... | |
>BCTERIALGSPC#Bacterial general secretion pathway protein C | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3093 | BCTERIALGSPD | 516 | e-179 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3095 | BCTERIALGSPF | 433 | e-153 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3096 | BCTERIALGSPG | 218 | 2e-76 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3097 | BCTERIALGSPH | 58 | 3e-13 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3098 | BCTERIALGSPH | 33 | 1e-04 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3108 | TCRTETA | 30 | 0.017 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 43 | SDY_3306 | SDY_3311 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3306 | 0 | 15 | -4.325191 | formate acetyltransferase 3 | |
| SDY_3307 | 1 | 21 | -6.496706 | propionate/acetate kinase | |
| SDY_3308 | 0 | 18 | -6.294147 | threonine/serine transporter TdcC | |
| SDY_3309 | 1 | 24 | -7.248548 | threonine dehydratase | |
| SDY_3310 | 1 | 23 | -6.674756 | DNA-binding transcriptional activator TdcA | |
| SDY_3311 | 0 | 22 | -4.291445 | DNA-binding transcriptional activator TdcR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3307 | ACETATEKNASE | 536 | 0.0 | Acetate kinase family signature. | |
>ACETATEKNASE#Acetate kinase family signature. | |||||
| 44 | SDY_3538 | SDY_3556 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3538 | -2 | 19 | -4.225008 | multidrug efflux system protein MdtE | |
| SDY_3539 | 2 | 20 | -8.272100 | hypothetical protein | |
| SDY_3540 | 2 | 17 | -4.342022 | insertion element IS1 protein InsA | |
| SDY_3541 | 2 | 14 | -4.453692 | insertion element iso-IS1d protein InsB | |
| SDY_3542 | 1 | 21 | -5.059637 | acid-resistance membrane protein | |
| SDY_3543 | 3 | 22 | -3.385844 | acid-resistance protein | |
| SDY_3544 | 2 | 22 | -1.377308 | acid-resistance protein | |
| SDY_3546 | 1 | 22 | -0.539201 | insertion element IS1 protein InsB | |
| SDY_4756 | 0 | 23 | -0.888505 | insertion element iso-IS1N protein InsA | |
| SDY_3547 | 0 | 23 | -2.033128 | hemin importer ATP-binding subunit | |
| SDY_3548 | -2 | 17 | -1.751861 | iron compound ABC transporter permease | |
| SDY_3549 | -3 | 17 | -2.350228 | hypothetical protein | |
| SDY_3550 | -1 | 18 | -4.198790 | hypothetical protein | |
| SDY_3552 | -1 | 19 | -4.761439 | periplasmic binding protein | |
| SDY_3553 | 0 | 19 | -5.149606 | hypothetical protein | |
| SDY_3554 | -1 | 16 | -3.980399 | outer membrane heme/hemoglobin receptor | |
| SDY_3555 | -1 | 18 | -4.924735 | heme/hemoglobin transport protein | |
| SDY_3556 | 1 | 16 | -3.136946 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3538 | RTXTOXIND | 49 | 1e-08 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3547 | PF05272 | 28 | 0.030 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3552 | FERRIBNDNGPP | 32 | 0.003 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| 45 | SDY_3628 | SDY_3641 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3628 | 0 | 18 | 3.826305 | insertion element IS1 protein InsA | |
| SDY_3629 | 1 | 20 | 4.571659 | 3-oxoacyl-ACP synthase | |
| SDY_3630 | 0 | 23 | 4.894811 | holo-(acyl carrier protein) synthase 2 | |
| SDY_3631 | 0 | 24 | 4.847756 | nickel periplasmic binding protein | |
| SDY_3632 | 1 | 26 | 5.812432 | nickel transporter permease NikB | |
| SDY_3633 | 0 | 23 | 4.787515 | nickel transporter permease NikC | |
| SDY_3634 | -1 | 22 | 3.298985 | nickel transporter ATP-binding protein NikD | |
| SDY_3635 | -1 | 20 | 0.707216 | nickel transporter ATP-binding protein NikE | |
| SDY_3636 | 1 | 22 | -1.788022 | nickel responsive regulator | |
| SDY_4761 | 4 | 25 | -3.800373 | insertion element iso-IS1N protein InsA | |
| SDY_3639 | 4 | 24 | -3.678396 | insertion element iso-IS1n protein InsB | |
| SDY_4762 | 2 | 25 | -3.302847 | insertion element iso-IS1N protein InsA | |
| SDY_3641 | 2 | 28 | -4.378351 | PTS system transporter subunit IIA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3635 | HTHFIS | 29 | 0.020 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 46 | SDY_3795 | SDY_3800 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3795 | 1 | 20 | 4.961888 | argininosuccinate lyase | |
| SDY_3796 | 2 | 22 | 4.896139 | DNA-binding transcriptional regulator OxyR | |
| SDY_3797 | 1 | 19 | 4.878363 | soluble pyridine nucleotide transhydrogenase | |
| SDY_4767 | 1 | 19 | 5.093124 | insertion element iso-IS1N protein InsA | |
| SDY_3799 | -1 | 17 | 5.357476 | insertion element iso-IS1n protein InsB | |
| SDY_3800 | -1 | 17 | 5.253430 | rhs element protein RhsB |
| 47 | SDY_3857 | SDY_3885 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3857 | -1 | 20 | -3.277409 | ribonuclease BN | |
| SDY_3858 | 0 | 20 | -3.553636 | phosphatase | |
| SDY_3862 | 0 | 21 | -3.128105 | insertion sequence element IS911 transposase | |
| SDY_3863 | 2 | 19 | -1.079473 | hypothetical protein | |
| SDY_4771 | 3 | 20 | -0.204548 | insertion element iso-IS1N protein InsA | |
| SDY_3867 | 3 | 23 | 0.216307 | shikimate transporter | |
| SDY_3868 | 2 | 22 | 1.339833 | insertion element IS1 protein InsA | |
| SDY_3869 | 2 | 19 | 1.933580 | insertion element iso-IS1d protein InsB | |
| SDY_3871 | 2 | 17 | 1.722545 | insertion sequence element IS4 transposase InsG | |
| SDY_3872 | 2 | 21 | 1.726358 | GTP-binding protein | |
| SDY_3873 | 0 | 15 | 1.666238 | glutamine synthetase | |
| SDY_3874 | 0 | 13 | 0.984190 | nitrogen regulation protein NR(II) | |
| SDY_3875 | 0 | 14 | -0.148567 | nitrogen regulation protein NR(I) | |
| SDY_3876 | 0 | 13 | -1.150149 | coproporphyrinogen III oxidase | |
| SDY_3877 | 0 | 14 | -1.620995 | hypothetical protein | |
| SDY_3878 | -2 | 13 | -1.688953 | ribosome biogenesis GTP-binding protein YsxC | |
| SDY_3879 | -2 | 14 | -1.732266 | DNA polymerase I | |
| SDY_3880 | 0 | 14 | -3.783794 | acyltransferase | |
| SDY_3881 | -2 | 16 | -2.667757 | insertion element iso-IS1n protein InsB | |
| SDY_4772 | -2 | 17 | -3.053154 | insertion element iso-IS1N protein InsA | |
| SDY_3883 | -2 | 18 | -2.919810 | insertion element iso-IS1d protein InsB | |
| SDY_3884 | 0 | 20 | -3.556504 | insertion element IS1 protein InsA | |
| SDY_3885 | -1 | 17 | -3.266480 | protein disulfide isomerase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3872 | TCRTETOQM | 180 | 4e-51 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3874 | PF06580 | 28 | 0.041 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3875 | HTHFIS | 602 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3877 | SECA | 28 | 0.030 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| 48 | SDY_4008 | SDY_4034 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4008 | 2 | 19 | -1.348362 | 16S rRNA methyltransferase GidB | |
| SDY_4009 | 3 | 32 | -0.100415 | F0F1 ATP synthase subunit I | |
| SDY_4010 | 2 | 31 | 0.159018 | ATP synthase F0F1 subunit A | |
| SDY_4011 | 4 | 40 | 1.176505 | ATP synthase F0F1 subunit C | |
| SDY_4012 | 4 | 38 | 1.284584 | ATP synthase F0F1 subunit B | |
| SDY_4013 | 3 | 33 | 1.157068 | ATP synthase F0F1 subunit delta | |
| SDY_4014 | 3 | 34 | 1.324760 | ATP synthase F0F1 subunit alpha | |
| SDY_4015 | 2 | 25 | 2.084522 | ATP synthase F0F1 subunit gamma | |
| SDY_4016 | 3 | 25 | 2.019211 | ATP synthase F0F1 subunit beta | |
| SDY_4017 | 1 | 20 | 1.384039 | ATP synthase F0F1 subunit epsilon | |
| SDY_4018 | 0 | 21 | 1.431807 | bifunctional N-acetylglucosamine-1-phosphate | |
| SDY_4019 | 0 | 25 | 1.963316 | glucosamine--fructose-6-phosphate | |
| SDY_4020 | 0 | 26 | 2.014345 | insertion sequence element IS1294 transposase | |
| SDY_4021 | -1 | 26 | 0.880405 | hypothetical protein | |
| SDY_4022 | 0 | 17 | -5.377824 | phosphate ABC transporter substrate-binding | |
| SDY_4023 | 2 | 17 | -7.891021 | phosphate transporter permease PstC | |
| SDY_4024 | 1 | 21 | -9.590984 | phosphate transporter permease PtsA | |
| SDY_4025 | 1 | 23 | -11.317784 | phosphate transporter subunit | |
| SDY_4026 | 3 | 31 | -12.951229 | transcriptional regulator PhoU | |
| SDY_4027 | 6 | 41 | -12.154466 | hypothetical protein | |
| SDY_4028 | 4 | 24 | -2.797279 | hypothetical protein | |
| SDY_4029 | 6 | 22 | -0.550240 | insertion element IS1 protein InsA | |
| SDY_4030 | 5 | 17 | 0.077794 | insertion element iso-IS1d protein InsB | |
| SDY_4775 | 3 | 17 | 0.171234 | insertion element iso-IS1N protein InsA | |
| SDY_4033 | 3 | 14 | 0.658054 | hypothetical protein | |
| SDY_4034 | 2 | 14 | 1.261401 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4012 | IGASERPTASE | 27 | 0.028 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4018 | RTXTOXINA | 29 | 0.047 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4033 | OMADHESIN | 64 | 3e-13 | Yersinia outer membrane adhesin signature. | |
>OMADHESIN#Yersinia outer membrane adhesin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4034 | OMADHESIN | 62 | 5e-12 | Yersinia outer membrane adhesin signature. | |
>OMADHESIN#Yersinia outer membrane adhesin signature. | |||||
| 49 | SDY_4049 | SDY_4059 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4049 | 1 | 15 | -3.800935 | L-threonine 3-dehydrogenase | |
| SDY_4050 | 2 | 21 | -6.747123 | 2-amino-3-ketobutyrate CoA ligase | |
| SDY_4051 | 3 | 28 | -9.854865 | ADP-L-glycero-D-manno-heptose-6-epimerase | |
| SDY_4052 | 5 | 36 | -12.112795 | ADP-heptose--LPS heptosyltransferase | |
| SDY_4053 | 5 | 45 | -15.485984 | ADP-heptose--LPS heptosyltransferase | |
| SDY_4054 | 5 | 47 | -17.655304 | lipid A-core:surface polymer ligase WaaL | |
| SDY_4055 | 3 | 39 | -15.113401 | beta 1,4-galactosyltransferase WaaX | |
| SDY_4056 | 4 | 33 | -11.950063 | UDP-galactose:(galactosyl) LPS | |
| SDY_4057 | 3 | 31 | -10.161803 | lipopolysaccharide core biosynthesis protein | |
| SDY_4058 | 3 | 25 | -7.023571 | lipopolysaccharide 1,2-glucosyltransferase | |
| SDY_4059 | 3 | 22 | -4.700762 | lipopolysaccharide 1,3-galactosyltransferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4051 | NUCEPIMERASE | 101 | 8e-27 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 50 | SDY_4107 | SDY_4128 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4107 | 0 | 32 | 3.775095 | insertion element iso-IS1d protein InsB | |
| SDY_4108 | 1 | 34 | 4.973882 | insertion element IS1 protein InsA | |
| SDY_4109 | 1 | 38 | 6.020568 | hypothetical protein | |
| SDY_4111 | 2 | 38 | 7.465005 | phosphonate/organophosphate ester ABC | |
| SDY_4112 | 1 | 39 | 7.364415 | phosphonate/organophosphate ester ABC | |
| SDY_4113 | 0 | 37 | 8.509211 | phosphonate/organophosphate ester ABC | |
| SDY_4114 | -1 | 36 | 8.365560 | phosphonate metabolism transcriptional regulator | |
| SDY_4116 | 0 | 38 | 8.454339 | carbon-phosphorus lyase complex subunit | |
| SDY_4117 | 0 | 37 | 8.200807 | phosphonate metabolism protein | |
| SDY_4118 | 0 | 37 | 7.774436 | phosphonate metabolism protein | |
| SDY_4119 | 0 | 36 | 7.970349 | phosphonate C-P lyase system protein PhnK | |
| SDY_4120 | 1 | 34 | 7.467593 | phosphonate ABC transporter ATP-binding protein | |
| SDY_4121 | 2 | 28 | 5.003695 | phosphonate metabolism protein | |
| SDY_4122 | 2 | 21 | 4.293498 | ribose 1,5-bisphosphokinase | |
| SDY_4123 | 1 | 21 | 4.013829 | aminoalkylphosphonic acid N-acetyltransferase | |
| SDY_4124 | 1 | 21 | 3.833210 | carbon-phosphorus lyase complex accessory | |
| SDY_4125 | 1 | 19 | 3.123921 | hypothetical protein | |
| SDY_4126 | 1 | 18 | 3.029343 | hypothetical protein | |
| SDY_4127 | 2 | 19 | 4.061427 | histidine kinase | |
| SDY_4128 | 0 | 18 | 3.277933 | ribose ABC transporter ATP-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4111 | PF05272 | 29 | 0.020 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4120 | PF05272 | 29 | 0.014 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4123 | SACTRNSFRASE | 33 | 3e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4125 | RTXTOXIND | 26 | 0.032 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4127 | HTHFIS | 58 | 6e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 51 | SDY_4204 | SDY_4221 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4204 | 2 | 22 | 4.220079 | low affinity tryptophan permease | |
| SDY_4205 | 3 | 24 | 5.586285 | insertion element IS2 transposase InsD | |
| SDY_4207 | 1 | 19 | 5.412337 | insertion sequence element IS2 repressor TnpA | |
| SDY_4781 | 0 | 17 | 5.333328 | insertion element iso-IS1N protein InsA | |
| SDY_4209 | 0 | 17 | 5.333328 | insertion element iso-IS1d protein InsB | |
| SDY_4210 | 0 | 17 | 5.410861 | rhs element protein RhsA | |
| SDY_4211 | 0 | 15 | 2.406943 | glutathione S-transferase | |
| SDY_4212 | -1 | 14 | 2.263500 | selenocysteine synthase | |
| SDY_4213 | -1 | 12 | 2.575515 | selenocysteinyl-tRNA-specific translation | |
| SDY_4782 | 1 | 17 | 1.411041 | insertion element iso-IS1N protein InsA | |
| SDY_4215 | 2 | 15 | 2.299849 | insertion element IS1 protein InsA | |
| SDY_4216 | 1 | 17 | 2.173177 | insertion element iso-IS1d protein InsB | |
| SDY_4218 | 0 | 15 | 1.889633 | phosphate-starvation-inducible protein PsiE | |
| SDY_4220 | 2 | 21 | 3.649619 | hypothetical protein | |
| SDY_4221 | 2 | 18 | 1.672081 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4213 | TCRTETOQM | 58 | 5e-11 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4220 | CHANLCOLICIN | 30 | 0.006 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| 52 | SDY_4287 | SDY_4297 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4287 | 1 | 17 | 3.124535 | hypothetical protein | |
| SDY_4288 | 0 | 20 | 4.870310 | oxidoreductase | |
| SDY_4292 | 0 | 21 | 5.143530 | *insertion sequence element IS911 transposase | |
| SDY_4293 | 0 | 21 | 5.507353 | iron-dicitrate ABC transporter ATP-binding | |
| SDY_4294 | 1 | 24 | 5.585329 | iron-dicitrate transporter subunit FecD | |
| SDY_4295 | 1 | 25 | 4.846063 | iron-dicitrate ABC transporter permease | |
| SDY_4297 | -1 | 23 | 3.254177 | citrate-dependent iron transport, outer membrane |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4297 | ECOLNEIPORIN | 33 | 0.004 | E.coli/Neisseria porin superfamily signature. | |
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. | |||||
| 53 | SDY_4330 | SDY_4342 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4330 | 2 | 19 | -0.430747 | homoserine O-succinyltransferase | |
| SDY_4331 | 2 | 23 | 0.058344 | insertion sequence element IS1 transposase | |
| SDY_4332 | 3 | 22 | 0.049403 | insertion element IS1 protein InsA | |
| SDY_4333 | 2 | 22 | 0.049403 | hypothetical protein | |
| SDY_4334 | 2 | 22 | 0.035759 | hypothetical protein | |
| SDY_4335 | 1 | 18 | -0.826725 | insertion sequence element IS4 transposase InsG | |
| SDY_4792 | 0 | 17 | -2.611682 | insertion element iso-IS1N protein InsA | |
| SDY_4337 | 0 | 18 | -2.758175 | insertion element iso-IS1n protein InsB | |
| SDY_4338 | 0 | 19 | -3.509435 | insertion element IS1 protein InsA | |
| SDY_4339 | 0 | 16 | -2.104280 | insertion element iso-IS1d protein InsB | |
| SDY_4340 | -1 | 17 | -0.355758 | hypothetical protein | |
| SDY_4341 | 1 | 20 | 0.321661 | insertion sequence element IS600 transposase | |
| SDY_4342 | 2 | 23 | 0.576472 | insertion sequence element IS600 integrase core |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4333 | SACTRNSFRASE | 31 | 0.001 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4334 | SHAPEPROTEIN | 31 | 7e-04 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4792 | ACRIFLAVINRP | 27 | 0.006 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 54 | SDY_4798 | SDY_4413 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4798 | 2 | 16 | 1.888041 | insertion element iso-IS1N protein InsA | |
| SDY_4406 | 1 | 14 | 1.564654 | insertion element iso-IS1n protein InsB | |
| SDY_4407 | 3 | 19 | 1.746306 | insertion element IS1 protein InsA | |
| SDY_4408 | 3 | 19 | 1.676793 | insertion element iso-IS1d protein InsB | |
| SDY_4409 | 5 | 22 | 1.450073 | 23S rRNA (guanosine-2'-O-)-methyltransferase | |
| SDY_4410 | 4 | 22 | 1.720331 | exoribonuclease R | |
| SDY_4411 | 4 | 21 | 1.251812 | transcriptional repressor NsrR | |
| SDY_4412 | 4 | 23 | 1.377470 | adenylosuccinate synthetase | |
| SDY_4413 | 2 | 17 | 1.177719 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4410 | RTXTOXIND | 31 | 0.028 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 55 | SDY_4469 | SDY_4495 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4469 | 2 | 25 | -1.017379 | insertion sequence element IS600 integrase core | |
| SDY_4470 | 1 | 22 | -1.077400 | insertion sequence element IS911 integrase core | |
| SDY_4805 | -1 | 21 | -4.236328 | *insertion element iso-IS1N protein InsA | |
| SDY_4473 | 0 | 28 | -8.783845 | insertion element IS1 protein InsB | |
| SDY_4474 | -1 | 23 | -6.035096 | transposase | |
| SDY_4806 | 0 | 23 | -5.707566 | insertion element iso-IS1N protein InsA | |
| SDY_4476 | 0 | 24 | -5.332503 | insertion element iso-IS1n protein InsB | |
| SDY_4477 | 0 | 24 | -5.055637 | DNA-binding transcriptional activator EvgA | |
| SDY_4478 | 0 | 23 | -4.142969 | hybrid sensory histidine kinase in two-component | |
| SDY_4479 | 2 | 28 | 4.696510 | insertion sequence element ISSfl4 transposase | |
| SDY_4480 | 2 | 31 | 2.370553 | insertion sequence element ISSfl4 ORF2 | |
| SDY_4481 | 2 | 30 | 0.982507 | insertion sequence element ISSfl4 ORF2 | |
| SDY_4482 | 2 | 29 | 0.034166 | hypothetical protein | |
| SDY_4483 | 1 | 25 | -0.730714 | insertion element IS1 protein InsA | |
| SDY_4484 | 2 | 22 | -2.273629 | insertion element iso-IS1d protein InsB | |
| SDY_4485 | 2 | 22 | -2.615336 | insertion sequence element IS600 integrase core | |
| SDY_4486 | 1 | 21 | -3.162664 | hypothetical protein | |
| SDY_4807 | 1 | 22 | -2.473718 | insertion element iso-IS1N protein InsA | |
| SDY_4487 | 1 | 22 | -2.828252 | insertion element iso-IS1n protein InsB | |
| SDY_4488 | 2 | 22 | -2.951167 | hypothetical protein | |
| SDY_4489 | 1 | 25 | -2.672342 | insertion element iso-IS1n protein InsB | |
| SDY_4808 | 1 | 27 | -2.755229 | insertion element iso-IS1N protein InsA | |
| SDY_4490 | 1 | 25 | -2.505467 | insertion sequence element IS600 integrase core | |
| SDY_4491 | 1 | 22 | -3.420772 | insertion sequence element IS600 transposase | |
| SDY_4492 | 0 | 19 | -3.503242 | hypothetical protein | |
| SDY_4495 | -1 | 19 | -3.183893 | insertion sequence element IS911 transposase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4477 | HTHFIS | 49 | 3e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4478 | HTHFIS | 79 | 2e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 56 | SDY_4581 | SDY_4591 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4581 | 4 | 25 | 1.289838 | insertion element iso-IS1d protein InsA | |
| SDY_4582 | 4 | 26 | 1.948333 | insertion element iso-IS1d protein InsB | |
| SDY_4584 | 5 | 23 | 2.033072 | insertion sequence element IS2 repressor TnpA | |
| SDY_4585 | 6 | 25 | 2.324645 | insertion element IS2 transposase InsD | |
| SDY_4586 | 8 | 26 | 1.588388 | insertion sequence element IS600 integrase core | |
| SDY_4589 | 9 | 28 | 2.083549 | hypothetical protein | |
| SDY_4590 | 7 | 25 | 1.681678 | DNA repair protein | |
| SDY_4591 | 3 | 20 | 1.828154 | hypothetical protein |
| 57 | SDY_0287 | SDY_0303 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0287 | 1 | 17 | -0.991292 | hypothetical protein | |
| SDY_0288a | 1 | 18 | -0.698934 | insertion element iso-IS1N protein InsA | |
| SDY_0290 | 1 | 18 | -0.747489 | hypothetical protein | |
| SDY_0291 | 3 | 24 | -0.958783 | peptidyl-prolyl cis-trans isomerase | |
| SDY_0292 | 4 | 24 | -1.315777 | transcriptional regulator HU subunit beta | |
| SDY_0293 | 3 | 23 | -1.288132 | DNA-binding ATP-dependent protease La | |
| SDY_0294 | 0 | 20 | -0.699067 | ATP-dependent protease ATP-binding subunit ClpX | |
| SDY_0295 | -1 | 17 | -0.569170 | ATP-dependent Clp protease proteolytic subunit | |
| SDY_0296 | 0 | 18 | -0.458967 | trigger factor | |
| SDY_0298 | 0 | 9 | 0.076534 | transcriptional regulator BolA | |
| SDY_0299 | 1 | 10 | 0.027730 | hypothetical protein | |
| SDY_0300 | 0 | 11 | -0.001727 | muropeptide transporter | |
| SDY_0301 | 0 | 11 | -0.119906 | insertion element iso-IS1n protein InsB | |
| SDY_0303a | -1 | 14 | -0.239310 | insertion element iso-IS1N protein InsA | |
| SDY_0303 | -1 | 13 | -0.049024 | transport protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0287 | PF08280 | 28 | 0.018 | M protein trans-acting positive regulator | |
>PF08280#M protein trans-acting positive regulator | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0292 | DNABINDINGHU | 117 | 3e-38 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0293 | GPOSANCHOR | 35 | 0.002 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0294 | HTHFIS | 29 | 0.043 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0299 | PF06291 | 27 | 0.024 | Lambda prophage Bor protein | |
>PF06291#Lambda prophage Bor protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0300 | TCRTETA | 39 | 3e-05 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0303a | ACRIFLAVINRP | 27 | 0.007 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0303 | TCRTETA | 83 | 3e-19 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 58 | SDY_0449 | SDY_0457 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0449 | 3 | 14 | 1.572321 | DNA polymerase III subunits gamma and tau | |
| SDY_0450 | 1 | 13 | -0.655511 | adenine phosphoribosyltransferase | |
| SDY_0451 | 1 | 11 | -0.479273 | hypothetical protein | |
| SDY_0452 | 0 | 14 | 0.138339 | primosomal replication protein N'' | |
| SDY_0453 | 1 | 13 | -0.689974 | hypothetical protein | |
| SDY_0454 | 0 | 14 | -0.901188 | potassium efflux protein KefA | |
| SDY_0455 | 1 | 14 | -1.365642 | DNA-binding transcriptional repressor AcrR | |
| SDY_0456 | 2 | 15 | -1.092784 | acridine efflux pump | |
| SDY_0457 | 1 | 15 | -1.630472 | acridine efflux pump |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0449 | IGASERPTASE | 40 | 4e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0454 | RTXTOXIND | 32 | 0.015 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0455 | HTHTETR | 222 | 5e-76 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0456 | RTXTOXIND | 44 | 7e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0457 | ACRIFLAVINRP | 1365 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 59 | SDY_0495a | SDY_0501 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0495a | 10 | 31 | -1.441748 | toxic polypeptide | |
| SDY_0495 | 9 | 30 | -1.096614 | insertion element IS2 transposase InsD | |
| SDY_0496 | 8 | 29 | -1.374296 | insertion sequence element IS2 repressor TnpA | |
| SDY_0497 | 5 | 24 | -0.963603 | hypothetical protein | |
| SDY_0498 | 0 | 18 | 1.714071 | hypothetical protein | |
| SDY_0499 | -1 | 18 | 2.677045 | insertion element IS1 protein InsA | |
| SDY_0500 | 0 | 19 | 3.154412 | insertion element iso-IS1d protein InsB | |
| SDY_0501 | 0 | 18 | 3.037657 | delta-aminolevulinic acid dehydratase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0495a | HOKGEFTOXIC | 56 | 4e-15 | Hok/Gef cell toxic protein family signature. | |
>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0497 | PRTACTNFAMLY | 30 | 0.016 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0498 | PRTACTNFAMLY | 80 | 2e-19 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0501 | BINARYTOXINB | 30 | 0.019 | Binary toxin B family signature. | |
>BINARYTOXINB#Binary toxin B family signature. | |||||
| 60 | SDY_0522 | SDY_0527 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0522 | -1 | 16 | 3.882038 | enterobactin exporter EntS | |
| SDY_0523 | -2 | 16 | 3.686980 | iron-enterobactin ABC transporter | |
| SDY_0524 | -2 | 18 | 3.695705 | isochorismate hydroxymutase | |
| SDY_0525 | -1 | 19 | 3.548623 | enterobactin synthase subunit E | |
| SDY_0526 | 0 | 18 | 2.006240 | 2,3-dihydro-2,3-dihydroxybenzoate synthetase | |
| SDY_0527 | 1 | 19 | 1.279363 | 2,3-dihydroxybenzoate-2,3-dehydrogenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0522 | TCRTETA | 33 | 0.002 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0523 | FERRIBNDNGPP | 63 | 1e-13 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0526 | ISCHRISMTASE | 440 | e-159 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0527 | DHBDHDRGNASE | 363 | e-130 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 61 | SDY_0806 | SDY_0811 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_0806 | -1 | 18 | 2.831573 | ATP-dependent RNA helicase RhlE | |
| SDY_0807 | -1 | 19 | 2.528014 | DNA-binding transcriptional regulator | |
| SDY_0808 | -1 | 18 | 2.595942 | hypothetical protein | |
| SDY_0809 | -1 | 19 | 2.086556 | ATPase | |
| SDY_0810 | -2 | 19 | 1.352501 | hypothetical protein | |
| SDY_0811 | -1 | 18 | 0.751224 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0806 | SECA | 30 | 0.024 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0807 | HTHTETR | 73 | 6e-18 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0808 | RTXTOXIND | 62 | 6e-13 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0809 | PF05272 | 33 | 0.005 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_0811 | ABC2TRNSPORT | 47 | 3e-08 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| 62 | SDY_1137 | SDY_1149 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_1137 | -1 | 12 | -0.355430 | phosphogluconate dehydratase | |
| SDY_1138 | -1 | 12 | -1.048427 | glucose-6-phosphate 1-dehydrogenase | |
| SDY_1141 | -1 | 15 | -1.079876 | pyruvate kinase | |
| SDY_1142 | -1 | 18 | -1.243727 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA | |
| SDY_1143 | -1 | 17 | -1.095846 | hypothetical protein | |
| SDY_1144 | -1 | 20 | -2.497719 | high-affinity zinc ABC transporter | |
| SDY_1145 | -1 | 20 | -1.590220 | high-affinity zinc ABC transporter ATPase | |
| SDY_1146 | -1 | 18 | -0.991030 | high-affinity zinc ABC transporter permease | |
| SDY_1147 | -2 | 14 | -0.786645 | Holliday junction DNA helicase RuvB | |
| SDY_1148 | 0 | 19 | 0.021501 | Holliday junction DNA helicase RuvA | |
| SDY_1149 | 0 | 20 | -0.116525 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1137 | PHPHTRNFRASE | 31 | 0.022 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1142 | BCTERIALGSPF | 30 | 0.013 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1144 | ADHESNFAMILY | 273 | 3e-93 | Adhesin family signature. | |
>ADHESNFAMILY#Adhesin family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1145 | PF05272 | 30 | 0.007 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_1149 | PilS_PF08805 | 29 | 0.007 | PilS N terminal | |
>PilS_PF08805#PilS N terminal | |||||
| 63 | SDY_2022 | SDY_2029 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2022 | -1 | 12 | -1.584978 | DNA-binding transcriptional regulator PhoP | |
| SDY_2023 | -1 | 12 | -1.333459 | sensor protein PhoQ | |
| SDY_2024 | -2 | 12 | -1.345663 | hypothetical protein | |
| SDY_2025 | -2 | 13 | -1.778850 | peptidase T | |
| SDY_2026 | -1 | 12 | -1.231496 | putrescine/spermidine ABC transporter ATPase | |
| SDY_2027 | -1 | 13 | -1.093740 | spermidine/putrescine ABC transporter permease | |
| SDY_2028 | -1 | 14 | -0.630318 | spermidine/putrescine ABC transporter permease | |
| SDY_2029 | -1 | 10 | 0.103437 | spermidine/putrescine ABC transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2022 | HTHFIS | 87 | 5e-22 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2023 | PF06580 | 29 | 0.046 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2026 | PF05272 | 30 | 0.016 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2029 | CHLAMIDIAOMP | 28 | 0.044 | Chlamydia major outer membrane protein signature. | |
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. | |||||
| 64 | SDY_2067 | SDY_2075 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2067 | 1 | 13 | 1.637995 | ribonuclease E | |
| SDY_2070 | 2 | 12 | 0.641143 | flagellar rod assembly protein/muramidase FlgJ | |
| SDY_2071 | 3 | 13 | 0.315173 | flagellar basal body P-ring biosynthesis protein | |
| SDY_2072 | 3 | 13 | -0.183187 | flagellar basal body L-ring protein | |
| SDY_2075 | 2 | 14 | -0.386542 | flagellar hook protein FlgE |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2067 | IGASERPTASE | 66 | 6e-13 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2070 | FLGFLGJ | 511 | 0.0 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2071 | FLGPRINGFLGI | 424 | e-151 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2072 | FLGLRINGFLGH | 346 | e-124 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2075 | FLGHOOKAP1 | 41 | 5e-06 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 65 | SDY_2394 | SDY_2398 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2394 | 0 | 15 | 2.232624 | dTDP-glucose enzyme | |
| SDY_2395 | 1 | 18 | 1.834097 | nucleotide di-P-sugar epimerase or dehydratase | |
| SDY_2396 | 0 | 17 | 1.595351 | regulator | |
| SDY_2397 | 0 | 24 | -6.211944 | hypothetical protein | |
| SDY_2398 | 0 | 27 | -6.862818 | insertion element iso-IS1d protein InsA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2394 | NUCEPIMERASE | 56 | 1e-10 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2395 | NUCEPIMERASE | 78 | 4e-18 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2396 | ECOLIPORIN | 29 | 0.025 | E.coli/Salmonella-type porin signature. | |
>ECOLIPORIN#E.coli/Salmonella-type porin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2398 | HTHTETR | 29 | 0.002 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 66 | SDY_2876 | SDY_2884 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_2876 | -1 | 15 | 0.691288 | permease | |
| SDY_2877 | -1 | 13 | 0.554456 | hypothetical protein | |
| SDY_2878 | -1 | 11 | 0.426064 | hypothetical protein | |
| SDY_2879 | -2 | 10 | 0.037004 | transcriptional repressor MprA | |
| SDY_2880 | -2 | 10 | 0.416829 | multidrug resistance secretion protein | |
| SDY_2882 | -2 | 10 | 0.174407 | hypothetical protein | |
| SDY_2883 | 0 | 12 | 0.570867 | hypothetical protein | |
| SDY_2884 | 0 | 14 | 0.242093 | S-ribosylhomocysteinase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2876 | TCRTETB | 45 | 3e-07 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2879 | PF05272 | 28 | 0.017 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2880 | RTXTOXIND | 76 | 2e-17 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_2884 | LUXSPROTEIN | 292 | e-105 | Bacterial autoinducer-2 (AI-2) production protein Lu... | |
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS | |||||
| 67 | SDY_3089 | SDY_3098 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3089 | -2 | 12 | 1.230421 | hypothetical protein | |
| SDY_3090 | -3 | 12 | 2.480248 | acyl-CoA synthetase | |
| SDY_3091 | -2 | 17 | 3.776536 | insertion element iso-IS1n protein InsB | |
| SDY_4737 | -3 | 16 | 3.732503 | insertion element iso-IS1N protein InsA | |
| SDY_3092 | -3 | 17 | 3.894487 | type II secretion protein GspC | |
| SDY_3093 | -2 | 20 | 4.543249 | type II secretion protein | |
| SDY_3094 | -1 | 18 | 5.005896 | type II secretion protein | |
| SDY_3095 | 0 | 18 | 4.056424 | type II secretion protein | |
| SDY_3096 | 0 | 15 | 3.346494 | type II secretion protein | |
| SDY_3097 | 1 | 15 | 3.549133 | type II secretion protein | |
| SDY_3098 | 2 | 16 | 3.448409 | type II secretion protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3089 | NUCEPIMERASE | 64 | 9e-14 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3092 | BCTERIALGSPC | 109 | 2e-30 | Bacterial general secretion pathway protein C signa... | |
>BCTERIALGSPC#Bacterial general secretion pathway protein C | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3093 | BCTERIALGSPD | 516 | e-179 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3095 | BCTERIALGSPF | 433 | e-153 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3096 | BCTERIALGSPG | 218 | 2e-76 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3097 | BCTERIALGSPH | 58 | 3e-13 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3098 | BCTERIALGSPH | 33 | 1e-04 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| 68 | SDY_3410 | SDY_3417 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3410 | -2 | 17 | -1.184457 | serine endoprotease | |
| SDY_3411 | -2 | 12 | -1.125255 | serine endoprotease | |
| SDY_3412 | -1 | 12 | -0.915557 | malate dehydrogenase | |
| SDY_3413 | -2 | 14 | -1.253203 | arginine repressor ArgR | |
| SDY_3414 | -2 | 14 | -0.675287 | hypothetical protein | |
| SDY_3415 | -1 | 12 | 0.264810 | hypothetical protein | |
| SDY_3416 | -3 | 11 | 0.894158 | p-hydroxybenzoic acid efflux subunit AaeB | |
| SDY_3417 | -2 | 9 | 0.953391 | p-hydroxybenzoic acid efflux subunit AaeA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3410 | V8PROTEASE | 72 | 6e-16 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3411 | V8PROTEASE | 53 | 8e-10 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3412 | DHBDHDRGNASE | 28 | 0.049 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3413 | ARGREPRESSOR | 169 | 4e-57 | Bacterial arginine repressor signature. | |
>ARGREPRESSOR#Bacterial arginine repressor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3417 | RTXTOXIND | 54 | 2e-10 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 69 | SDY_3507 | SDY_3514 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3507 | 1 | 13 | -0.641238 | hypothetical protein | |
| SDY_3508 | 0 | 15 | 0.979018 | FKBP-type peptidylprolyl isomerase | |
| SDY_3509 | 0 | 14 | 2.597661 | hypothetical protein | |
| SDY_3510 | -1 | 13 | 2.445431 | FKBP-type peptidylprolyl isomerase | |
| SDY_3511 | 0 | 15 | 2.157683 | hypothetical protein | |
| SDY_3512 | 0 | 16 | 2.153886 | NEM-activable K+/H+ antiporter | |
| SDY_3513 | 0 | 18 | 1.399235 | glutathione-regulated potassium-efflux system | |
| SDY_3514 | -1 | 14 | 0.782952 | ABC transporter ATP-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3507 | ACRIFLAVINRP | 29 | 0.024 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3508 | INFPOTNTIATR | 132 | 4e-40 | Macrophage infectivity potentiator signature. | |
>INFPOTNTIATR#Macrophage infectivity potentiator signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3513 | ISCHRISMTASE | 28 | 0.024 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3514 | GPOSANCHOR | 35 | 0.001 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| 70 | SDY_3834 | SDY_3838 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3834 | -1 | 13 | 0.450788 | DNA-binding transcriptional regulator CpxR | |
| SDY_3835 | -1 | 13 | -0.041923 | two-component sensor protein | |
| SDY_3836 | 0 | 16 | -0.671190 | hypothetical protein | |
| SDY_3837 | 0 | 15 | -0.093644 | 2-keto-3-deoxygluconate permease | |
| SDY_3838 | 0 | 14 | 0.306109 | superoxide dismutase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3834 | HTHFIS | 92 | 9e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3835 | PF06580 | 29 | 0.031 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3837 | ACRIFLAVINRP | 29 | 0.021 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3838 | UREASE | 27 | 0.049 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 71 | SDY_3872 | SDY_3877 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_3872 | 2 | 21 | 1.726358 | GTP-binding protein | |
| SDY_3873 | 0 | 15 | 1.666238 | glutamine synthetase | |
| SDY_3874 | 0 | 13 | 0.984190 | nitrogen regulation protein NR(II) | |
| SDY_3875 | 0 | 14 | -0.148567 | nitrogen regulation protein NR(I) | |
| SDY_3876 | 0 | 13 | -1.150149 | coproporphyrinogen III oxidase | |
| SDY_3877 | 0 | 14 | -1.620995 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3872 | TCRTETOQM | 180 | 4e-51 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3874 | PF06580 | 28 | 0.041 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3875 | HTHFIS | 602 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_3877 | SECA | 28 | 0.030 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| 72 | SDY_4120 | SDY_4150 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4120 | 1 | 34 | 7.467593 | phosphonate ABC transporter ATP-binding protein | |
| SDY_4121 | 2 | 28 | 5.003695 | phosphonate metabolism protein | |
| SDY_4122 | 2 | 21 | 4.293498 | ribose 1,5-bisphosphokinase | |
| SDY_4123 | 1 | 21 | 4.013829 | aminoalkylphosphonic acid N-acetyltransferase | |
| SDY_4124 | 1 | 21 | 3.833210 | carbon-phosphorus lyase complex accessory | |
| SDY_4125 | 1 | 19 | 3.123921 | hypothetical protein | |
| SDY_4126 | 1 | 18 | 3.029343 | hypothetical protein | |
| SDY_4127 | 2 | 19 | 4.061427 | histidine kinase | |
| SDY_4128 | 0 | 18 | 3.277933 | ribose ABC transporter ATP-binding protein | |
| SDY_4130 | -1 | 16 | 2.552716 | ribose ABC transporter substrate-binding | |
| SDY_4131 | 0 | 15 | 2.029184 | hypothetical protein | |
| SDY_4132 | 1 | 17 | 2.242079 | hypothetical protein | |
| SDY_4133 | -2 | 17 | 1.007874 | kinase | |
| SDY_4134 | -2 | 16 | -0.111272 | transcriptional regulator | |
| SDY_4135 | -2 | 16 | -0.418906 | insertion element iso-IS1n protein InsB | |
| SDY_4776 | -1 | 16 | -0.188488 | insertion element iso-IS1N protein InsA | |
| SDY_4136 | -1 | 17 | -0.818089 | hypothetical protein | |
| SDY_4137 | -1 | 18 | -1.765097 | hypothetical protein | |
| SDY_4139 | 2 | 20 | -1.676800 | insertion element IS1 protein InsA | |
| SDY_4140 | 1 | 16 | -0.284484 | insertion element iso-IS1d protein InsB | |
| SDY_4141 | 1 | 11 | -0.248825 | transport protein | |
| SDY_4142 | 0 | 12 | 0.373953 | hypothetical protein | |
| SDY_4143 | -1 | 12 | 1.829340 | DNA-binding protein | |
| SDY_4144 | -1 | 13 | 2.472392 | hypothetical protein | |
| SDY_4146 | -1 | 13 | 2.516321 | cryptic adenine deaminase | |
| SDY_4147 | -1 | 14 | 2.422847 | sugar phosphate antiporter | |
| SDY_4148 | 0 | 16 | 2.869089 | regulatory protein UhpC | |
| SDY_4149 | 0 | 16 | 2.230760 | sensory histidine kinase UhpB | |
| SDY_4150 | 1 | 16 | 1.903475 | DNA-binding transcriptional activator UhpA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4120 | PF05272 | 29 | 0.014 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4123 | SACTRNSFRASE | 33 | 3e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4125 | RTXTOXIND | 26 | 0.032 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4127 | HTHFIS | 58 | 6e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4130 | SUBTILISIN | 29 | 0.024 | Subtilisin serine protease family (S8) signature. | |
>SUBTILISIN#Subtilisin serine protease family (S8) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4131 | BCTERIALGSPD | 30 | 0.013 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4134 | HTHFIS | 92 | 1e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4136 | INTIMIN | 48 | 2e-08 | Intimin signature. | |
>INTIMIN#Intimin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4137 | INTIMIN | 296 | 8e-93 | Intimin signature. | |
>INTIMIN#Intimin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4141 | TCRTETA | 38 | 5e-05 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4146 | UREASE | 37 | 1e-04 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4147 | TCRTETB | 35 | 6e-04 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4148 | TCRTETB | 39 | 4e-05 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4149 | PF06580 | 40 | 2e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4150 | HTHFIS | 60 | 4e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 73 | SDY_4328 | SDY_4792 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| SDY_4328 | 0 | 15 | 0.048405 | isocitrate lyase | |
| SDY_4330 | 2 | 19 | -0.430747 | homoserine O-succinyltransferase | |
| SDY_4331 | 2 | 23 | 0.058344 | insertion sequence element IS1 transposase | |
| SDY_4332 | 3 | 22 | 0.049403 | insertion element IS1 protein InsA | |
| SDY_4333 | 2 | 22 | 0.049403 | hypothetical protein | |
| SDY_4334 | 2 | 22 | 0.035759 | hypothetical protein | |
| SDY_4335 | 1 | 18 | -0.826725 | insertion sequence element IS4 transposase InsG | |
| SDY_4792 | 0 | 17 | -2.611682 | insertion element iso-IS1N protein InsA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4328 | BINARYTOXINB | 32 | 0.004 | Binary toxin B family signature. | |
>BINARYTOXINB#Binary toxin B family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4333 | SACTRNSFRASE | 31 | 0.001 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4334 | SHAPEPROTEIN | 31 | 7e-04 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| SDY_4792 | ACRIFLAVINRP | 27 | 0.006 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||