PredictBias

		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

		          Length = 732

		

		 Score = 36.3 bits (83), Expect = 3e-04

		 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

		

		Query: 184 QLCQAVEHAHHNQVLHADLKPENILIDHAQ-RPKLLDFNLTQKVSDQAKQQGKTGLVAFS 242

		           +L     H     V+H D+KP N++ D A   P ++D  L  +  +Q K         F+

		Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPK--------GFT 304

		

		Query: 243 EHYASPEQKSGGY-LTQQSDLYSLGKILQLLF------PHMKKRSDLCFIAEKATQAIAE 295

		           E + +PE   G    +++SD++ +   L          P +K    L FI  +    + E

		Sbjct: 305 ESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDE 364

		

		Query: 296 QRY 298

		             Y

		Sbjct: 365 NGY 367

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 34.0 bits (78), Expect = 5e-04

		 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

		

		Query: 54  SDAASPATIAMCEESVNHAIDYSNENRDTL-NALIQIQQALEKQVAEIRAASQNPSEHDL 112

		                P    + EE V        E   T  N   Q +  L+K+ AE        + ++ 

		Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE- 227

		

		Query: 113 ASIEALNQKLSKSQQLIRKLKGDLDKSVRGLRKAKAKLLEQNDTVDGLRKQKEDIEKQFE 172

		                   +L     L+   K  + K    + + + K +E  + +   + Q E IE +  

		Sbjct: 228 NLSRVEKSRLDDFSSLLH--KQAIAKH--AVLEQENKYVEAVNELRVYKSQLEQIESEIL 283

		

		Query: 173 QLEREYIMISE 183

		             + EY ++++

		Sbjct: 284 SAKEEYQLVTQ 294

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 76.8 bits (189), Expect = 7e-18

		 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

		

		Query: 2   KILIVDDSKATLEIVRKALLGFGYRRLSIEKTNCAREALEKMAHWRPDIVLTDWHMPDMS 61

		            IL+ DD  A   ++ +AL   GY    +  T+ A      +A    D+V+TD  MPD +

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYD---VRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

		

		Query: 62  GLELVQTVASRFPEVKIAMITTVDDDEQIAQAKAAGASFVLSKPFDDDALHRKLLPLVQG 121

		             +L+  +    P++ + +++  +      +A   GA   L KPFD            + 

		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT----------EL 111

		

		Query: 122 AEESEKAFDELVEIQKEL 139

		                +A  E      +L

		Sbjct: 112 IGIIGRALAEPKRRPSKL 129

		

		

		>SECYTRNLCASE#Preprotein translocase SecY subunit signature.

		          Length = 437

		

		 Score = 30.1 bits (68), Expect = 0.026

		 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

		

		Query: 201 GEVGKDALLDMECRAYHSVGTCTFYGTANTNQLVFEAMGLMLPGSAFIHPNSELRHALTE 260

		           G+ G   +       Y +V      GT          +         I P+  +   +T 

		Sbjct: 106 GQAGTAKITQYTR--YLTVALAILQGTGLVATARSAPLFGRCSVGGQIVPDQSIFTTIT- 162

		

		Query: 261 HAAIKMAAMTAGSAHFRSLAEVVTEKSLINGIIALLASG 299

		                +  MTAG+     L E++T++ + NG+  L+   

		Sbjct: 163 ----MVICMTAGTCVVMWLGELITDRGIGNGMSILMFIS 197

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 29.7 bits (66), Expect = 0.001

		 Identities = 15/48 (31%), Positives = 26/48 (54%)

		

		Query: 39  LEFDDRSQIIINRQEPMQEIWLASKSGGFHFQYKAGQWICSKTGVEFA 86

		           L+   +S ++ N QEP     L +  GG+ F+Y+ G++     GV+ A

		Sbjct: 165 LKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA 212

		

		

		>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase

		           signature.

		          Length = 468

		

		 Score = 27.1 bits (59), Expect = 0.043

		 Identities = 6/20 (30%), Positives = 9/20 (45%)

		

		Query: 114 LHCMGGSGRTGLFAAHLLLE 133

		           +HC  G GRT      + + 

		Sbjct: 401 IHCRAGVGRTAQLIGAMCMN 420

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 28.7 bits (64), Expect = 0.047

		 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

		

		Query: 42  GYSALAIASLFLF-YEFFGVVTNLIGGWLGARLGLNKTMNIGLAMQIIALLMLAV----P 96

		             S   I S+ +F      ++   IGG L  R G    +NIG+    ++ L  +      

		Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT 347

		

		Query: 97  AAWLTIPWVMAAQALSGIAKDLNKMSAKSA 126

		           + ++TI  V     LS     ++ + + S 

		Sbjct: 348 SWFMTIIIVFVLGGLSFTKTVISTIVSSSL 377

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 48.1 bits (114), Expect = 3e-09

		 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

		

		Query: 4   MGIRAQQKEKTRRSLIDAAFSQLSADRSFSNLSLREVAREAGIAPTSFYRHFKDMDELGL 63

		                Q+ ++TR+ ++D A  +L + +  S+ SL E+A+ AG+   + Y HFKD  +L  

		Sbjct: 2   ARKTKQEAQETRQHILDVA-LRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60

		

		Query: 64  TMVDEGGLLLRQLMRQARQRIVKEG-SVIRTSVETFMEFIESSPNVFRLL 112

		            + +     + +L  + + +   +  SV+R  +   +E   +      L+

		Sbjct: 61  EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 30.3 bits (68), Expect = 0.003

		 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

		

		Query: 93  VAVATDCHGQGVGQGLIKFGLATLKEKGV------TVAITYGDINFYSKTGF 138

		           +AVA D   +GVG  L+   +   KE         T  I     +FY+K  F

		Sbjct: 95  IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 67.5 bits (165), Expect = 2e-14

		 Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 24/231 (10%)

		

		Query: 81  AGDELVTIDPRPFELAVKAAKFDLQQAAQSYEADSAAISVAQANEVAARVKVNNAKKNVE 140

		             +E V       +      +    Q   + +   A      A            K  ++

		Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238

		

		Query: 141 RNRVLANKGTISQ-AVMD------NIIAELETAQAGLAQASSALEKAKQEFGPRGID--- 190

		               L +K  I++ AV++        + EL   ++ L Q  S +  AK+E+         

		Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298

		

		Query: 191 ---------NPEIQSVLNRQEQALLNLNHTKLTAPANGVITNMDV-AVGDYAAAGQPLLT 240

		                       I  +     +       + + AP +  +  + V   G      + L+ 

		Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358

		

		Query: 241 FI-NNNNLWLTAMVRENSLAHLKPGDKVKIVFDANPGEVY---EGKISSIG 287

		            +  ++ L +TA+V+   +  +  G    I  +A P   Y    GK+ +I 

		Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 76.0 bits (187), Expect = 1e-16

		 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

		

		Query: 465 SGKSVLIVEDNRVNQLVAQRLCQKLGFTTYIASNGIEAVKRVRECSFDVILMDHQMPQMG 524

		           +G ++L+ +D+   + V  +   + G+   I SN     + +     D+++ D  MP   

		Sbjct: 2   TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

		

		Query: 525 GIEATKLIRNEHAFQGIILGCTADVTKDTAIAFVDAGANGVITKPLQLDSLGELIARSVT 584

		             +    I+       +++  +A  T  TAI   + GA   + KP  L  L  +I R++ 

		Sbjct: 62  AFDLLPRIKKARPDLPVLV-MSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

		

		Query: 585 L 585

		            

		Sbjct: 121 E 121

		

		

		>INTIMIN#Intimin signature.

		          Length = 939

		

		 Score = 33.5 bits (76), Expect = 0.003

		 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 12/244 (4%)

		

		Query: 71  NSSVDVTKDVIWKSEASNVLAIDSKGEAKGKDIGSSKIQASIGNVHSNAVNIEV-TDAII 129

		            S   V       +  S    +  K +  G+ + S+K       +++NAV     T A I

		Sbjct: 601 VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASI 660

		

		Query: 130 TSIQITPSAASLAKGQTQPLTATAIFSD------DTSFPVTESVTWKSEDTNIATVTNKG 183

		           T I+   + A          T   +  D      + +F  T      S +        K 

		Sbjct: 661 TEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKV 720

		

		Query: 184 VLNAINSGIVEIFANKDGVTSNAVNIEVTDAIITSIQITPSAASLAKGQTQPLTATAIFS 243

		            L +   G   + A    V  +    EV      +I    +   +  G    L    +  

		Sbjct: 721 TLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTID-DGNIEIVGTGVKGKLPTVWLQY 779

		

		Query: 244 DDTSFPVTE---SVTWKSEDTNIATV-TNKGVLNAINSGIVEIFANKDGVASNAVNIEVT 299

		              +   +      TW+S +  IA+V  + G +     G   I        +    I   

		Sbjct: 780 GQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIATP 839

		

		Query: 300 DAII 303

		           +++I

		Sbjct: 840 NSLI 843

		

		

		

		 Score = 32.0 bits (72), Expect = 0.010

		 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 12/205 (5%)

		

		Query: 167 VTWKSEDTNIATVTNKGVLNAINSGIVEIFANKDGVTSNAVNIEV-TDAIITSIQITPSA 225

		            +  +  +  ATVT K           +       + +NAV     T A IT I+   + 

		Sbjct: 610 NSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTT 669

		

		Query: 226 ASLAKGQTQPLTATAIFSD------DTSFPVTESVTWKSEDTNIATVTNKGVLNAINSGI 279

		           A          T   +  D      + +F  T      S +        K  L +   G 

		Sbjct: 670 AVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGK 729

		

		Query: 280 VEIFANKDGVASNAVNIEVTDAIITSIQITPSAASLAKGQTQTLTATAIFSDDTSFPVTE 339

		             + A    VA +    EV      +I    +   +  G    L    +     +   + 

		Sbjct: 730 SLVSARVSDVAVDVKAPEVEFFTTLTID-DGNIEIVGTGVKGKLPTVWLQYGQVNLKASG 788

		

		Query: 340 ---SVTWKSEDTNIATV-TNKGVLN 360

		                TW+S +  IA+V  + G + 

		Sbjct: 789 GNGKYTWRSANPAIASVDASSGQVT 813

		

		

		>OUTRMMBRANEA#Outer membrane protein A signature.

		          Length = 346

		

		 Score = 39.1 bits (91), Expect = 4e-06

		 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 28/196 (14%)

		

		Query: 8   TLILTIFSLSANATTNKHIIGTNIGYGGVNYGAPTSEESG----------DMFLGEIYYR 57

		           T I    +L+  AT  +     N  Y G   G     ++G          +      +  

		Sbjct: 4   TAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGG 63

		

		Query: 58  YMTMHNFGIEAGYKGAIDGIGSAIVNQISQISDASFSGLRLSGYGSYPLSSGFELYGKAG 117

		           Y      G E GY    D +G        +       G++L+    YP++   ++Y + G

		Sbjct: 64  YQVNPYVGFEMGY----DWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLG 119

		

		Query: 118 VTYYTLEYTYKVNDQTKNIDHATIGGEVAGGIGWS----------YRYFGLNVEYVYSKN 167

		              +  +    V  +  +     +    AGG+ ++          Y++   N+   ++  

		Sbjct: 120 GMVWRADTKSNVYGKNHD---TGVSPVFAGGVEYAITPEIATRLEYQWTN-NIGDAHTIG 175

		

		Query: 168 SDFDSSGLMFGAQFRF 183

		           +  D+  L  G  +RF

		Sbjct: 176 TRPDNGMLSLGVSYRF 191

		

		

		>BCTERIALGSPD#Bacterial general secretion pathway protein D

		           signature.

		          Length = 660

		

		 Score =  621 bits (1602), Expect = 0.0

		 Identities = 315/638 (49%), Positives = 433/638 (67%), Gaps = 30/638 (4%)

		

		Query: 5   FSKSAWLLAGTLACSSGVLANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKIDVR 64

		           FS +  + A  L   +   A EFSASFKGTDIQEFIN V +NL KT+I+DPSVRG I VR

		Sbjct: 10  FSLTLLIFAALLFRPAA--AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVR 67

		

		Query: 65  SYDVLNEEQYYSFFLNVLEVYGYAVVEMENGVLKVVKSKDSKTSAIPVVSDDT-VKGDNV 123

		           SYD+LNEEQYY FFL+VL+VYG+AV+ M NGVLKVV+SKD+KT+A+PV SD     GD V

		Sbjct: 68  SYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEV 127

		

		Query: 124 ITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVD 183

		           +TRVV + NV+ R+L+PLLRQL DNAG G+VVHY+P+N++L+TGRAAV+ RL  I++RVD

		Sbjct: 128 VTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVD 187

		

		Query: 184 QAGDTEIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPK 243

		            AGD  +  V L  ASAA++V++V  LN+ T     P  +   +VADERTN++L+SG+P 

		Sbjct: 188 NAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPN 247

		

		Query: 244 VRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQ 303

		            R R+  +I+QLD + A++GN +V+YLKYAKA DLV+VL G+S  +Q+EK    K  ++ 

		Sbjct: 248 SRQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEK-QAAKPVAAL 306

		

		Query: 304 RNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIRRAQVLIEALIVEMAEGDGVNLGV 363

		             +++I AH  TN+L++TA PD+M  L+ VI QLDIRR QVL+EA+I E+ + DG+NLG+

		Sbjct: 307 DKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGI 366

		

		Query: 364 QWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDQTKTEYYTNKDGDRVPYQVTESGDYSTL 423

		           QW N   G + Q++N+G PI   + G  +                            S+L

		Sbjct: 367 QWANKNAG-MTQFTNSGLPISTAIAGANQYNKDGTVS--------------------SSL 405

		

		Query: 424 AAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVIT 483

		           A+AL+  NG A     G+W  L++A+SS + ++IL++PSI  +DN EA+F VG+EVPV+T

		Sbjct: 406 ASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465

		

		Query: 484 GSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVL----GANGAVDV 539

		           GS   S  DN F TV+RK VGIKLKV PQINEGDSV L IEQEVS+V       +  +  

		Sbjct: 466 GSQTTS-GDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGA 524

		

		Query: 540 RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKN 599

		            F  R +N +V+V  G+ +V+GGL+D+   ++  KVPLLGDIP++G LF+ST+ +V K+N

		Sbjct: 525 TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRN 584

		

		Query: 600 LMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKADQG 637

		           LM+FI+PT+IRD       +  +Y      Q  +  + 

		Sbjct: 585 LMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKE 622

		

		

		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

		          Length = 296

		

		 Score = 29.9 bits (67), Expect = 0.020

		 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

		

		Query: 1   MVDILDTAPSYRRLPFSFANRFKMVLEIEHPERPPVLYYVEPLNAQALVEVRRVLKQ 57

		            +D L   P ++ +PF  A RF+ V        P V +Y   L+A   V   RVL  

		Sbjct: 245 DMDALMATPLWQAMPFVRAGRFQRV--------PAVWFYGATLSAMHFV---RVLDN 290

		

		

		>BCTERIALGSPF#Bacterial general secretion pathway protein F

		           signature.

		          Length = 408

		

		 Score =  514 bits (1326), Expect = 0.0

		 Identities = 219/407 (53%), Positives = 304/407 (74%), Gaps = 3/407 (0%)

		

		Query: 1   MAAFEYKALDAKGRTKKGTLEGDNARQVRQRLKEQGMVPIEVMETKAKLAKSKSSG---G 57

		           MA + Y+ALDA+G+  +GT E D+ARQ RQ L+E+G+VP+ V E +    KS S+G    

		Sbjct: 1   MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60

		

		Query: 58  FKRGISTPELSLITRQISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTL 117

		            K  +ST +L+L+TRQ++TLV + MPLEE L AV+ Q+EKP +  ++AAVR+KV EG++L

		Sbjct: 61  RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120

		

		Query: 118 ADSLSDYPHIFDELYRSMVAAGEKSGHLDAVLERLADYCENRQKMRSKLLQAMIYPVVLV 177

		           AD++  +P  F+ LY +MVAAGE SGHLDAVL RLADY E RQ+MRS++ QAMIYP VL 

		Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180

		

		Query: 178 VFAVTIVAFLLATVVPKIVEPIIQMGQELPQSTQFLLAASEFVQEWGLLLLGSIVFAIYL 237

		           V A+ +V+ LL+ VVPK+VE  I M Q LP ST+ L+  S+ V+ +G  +L +++     

		Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240

		

		Query: 238 LKTALKKPNVRMAWDRRILSLPLLGKISKGLNTARFARTLSICTSSAIPILEGMRVAVDV 297

		            +  L++   R+++ RR+L LPL+G+I++GLNTAR+ARTLSI  +SA+P+L+ MR++ DV

		Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300

		

		Query: 298 MSNQFVKQQVLLAADSVREGASLRKALDQTRLFPPMMLHMIASGEQSGELESMLTRAADN 357

		           MSN + + ++ LA D+VREG SL KAL+QT LFPPMM HMIASGE+SGEL+SML RAADN

		Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360

		

		Query: 358 QDQSFESTVNIALGIFTPALIALMAGLVLFIVMATLMPMLEMNNLMS 404

		           QD+ F S + +ALG+F P L+  MA +VLFIV+A L P+L++N LMS

		Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLMS 407

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		           signature.

		          Length = 145

		

		 Score =  220 bits (563), Expect = 2e-77

		 Identities = 88/141 (62%), Positives = 107/141 (75%), Gaps = 4/141 (2%)

		

		Query: 17  KAKKQAGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQKAITDIVALENALDMYKLD 76

		              KQ GFTLLE+MVV+VI+G+LAS VVPNL+GNKEKAD+QKA++DIVALENALDMYKLD

		Sbjct: 3   ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62

		

		Query: 77  NSVYPTTDQGLEALVTKPSS-PEPRNYRDGGYIKRLPKDPWGNEYQYMSPGDKGTIDIFT 135

		           N  YPTT+QGLE+LV  P+  P   NY   GYIKRLP DPWGN+Y  ++PG+ G  D+ +

		Sbjct: 63  NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122

		

		Query: 136 LGADGQEGGEGAAADIGNWNM 156

		            G DG+ G E    DI NW +

		Sbjct: 123 AGPDGEMGTED---DITNWGL 140

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		           signature.

		          Length = 170

		

		 Score =  105 bits (262), Expect = 2e-30

		 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

		

		Query: 42  RLAGFTLIEILLVLVLLSLTAVAVIATLPTRSDERGKKYAQSFYQRLQLLNEEAVLSGKD 101

		           R  GFTL+E++L+L+L+ ++A  V+   P   D+   +    F  +L+ + +  + +G+ 

		Sbjct: 2   RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61

		

		Query: 102 FGVRIEEEKSRYTLLKLEADGWQTLELNKIPATTELEDEVAMQLTLGGGAWQ--QDDRLF 159

		           FGV +              D WQ L L           +        G  W   +  R+ 

		Sbjct: 62  FGVSVHP------------DRWQFLVLEARDGADPAPADDGWS----GYRWLPLRAGRVA 105

		

		Query: 160 KPGSLFDEEM---FADEEKEKKQRPPQIFILSSGELTPFSLS 198

		             GS+   ++   FA  E       P + I   GE+TPF L+

		Sbjct: 106 TSGSIAGGKLNLAFAQGEAWTPGDNPDVLIFPGGEMTPFRLT 147

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 35.7 bits (82), Expect = 7e-05

		 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

		

		Query: 13 RQRGFTLIE---VLVSIAIFATLSVAAYQVVNQVQRSNELSQERTARLNELQRALVMMDS 69

		          RQRGFTL+E   +L+ + + A + + A+        + +      A+L  +Q+  +    

		Sbjct: 2  RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRD-DSAAQTLARFEAQLRFVQQRGLQTGQ 60

		

		Query: 70 DF-------RQIALRQTRTNGEEPSKKLLHWADY 96

		           F       R   L     +G +P+     W+ Y

		Sbjct: 61 FFGVSVHPDRWQFLVLEARDGADPAPADDGWSGY 94

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 26.6 bits (58), Expect = 0.048

		 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

		

		Query: 31  REPVAPTVALAKSNAERKVKSDDKRRRQSSWDPSEHPGYEMETN 74

		              V  +V+   S  + K + D++ RRQ  WD + HP    E N

		Sbjct: 280 HNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDAT-HPVEAAERN 322

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  101 bits (252), Expect = 1e-26

		 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

		

		Query: 10  KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69

		            ILV DDDA +R +L + LS  G+ VR  +N   + R +   +  L+V D+++P E+   

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 70  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVL---RR 126

		           +  R++ A   LP+L+++A+   +  I   E GA DYLPKPF+  EL+  I   L   +R

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 127 QTIELPGAPSAEEKIV 142

		           +  +L         +V

		Sbjct: 125 RPSKLEDDSQDGMPLV 140

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 34.1 bits (78), Expect = 0.001

		 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 28/105 (26%)

		

		Query: 333 LVVNALRYG------NGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDT 386

		           LV N +++G       G + +    T D+  V + VE+ G    K+              

		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKG--TKDNGTVTLEVENTGSLALKNT------------- 307

		

		Query: 387 ARGSEGTGLGLAIVKRIVSQHHG---SVVVNNRSEGGLKVQLSFP 428

		               E TG GL  V+  +   +G    + ++ + +G +   +  P

		Sbjct: 308 ---KESTGTGLQNVRERLQMLYGTEAQIKLSEK-QGKVNAMVLIP 348

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 32.5 bits (74), Expect = 0.006

		 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

		

		Query: 291 MRLVQGDV-----GSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHAINFANWFEKMG 345

		           M L +  +     G GKTL A L A      G  V ++   + LA++ A N    FE +G

		Sbjct: 92  MVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG 151

		

		Query: 346 IPVGW-LAGKLKGKAKEAELARI 367

		           + VG  L G      +EA  A I

		Sbjct: 152 LTVGINLPGMPAPAKREAYAADI 174

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 66.5 bits (162), Expect = 1e-15

		 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

		

		Query: 50  EKVQEKKRELPKPPPPKRPPPPPEMKITSTVKPVMEQIPMDMPKLDLPVNITGGSVLGHY 109

		           E  +E    + KP P  +P P P  K+    +P  +  P++        N          

		Sbjct: 85  EPPKEAPVVIEKPKPKPKPKPKPVKKVE---QPKRDVKPVESRPASPFENTAPARPTSST 141

		

		Query: 110 SQGGGAQVAGT--GGPMPLATFQPQMPRKAAKAGLEKGLVVLEFTVNERGGVEDIKVLKE 167

		           +    ++   +   GP  L+  QPQ P +A    +E G V ++F V   G V+++++L  

		Sbjct: 142 ATAATSKPVTSVASGPRALSRNQPQYPARAQALRIE-GQVKVKFDVTPDGRVDNVQILSA 200

		

		Query: 168 EPRRMDLGKEARKTVSKWTFKPKMVDGK 195

		           +P  M   +E +  + +W ++P      

		Sbjct: 201 KPANM-FEREVKNAMRRWRYEPGKPGSG 227

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 25.0 bits (54), Expect = 0.022

		 Identities = 8/24 (33%), Positives = 13/24 (54%)

		

		Query: 7  LSVEEIAEYLGVSKDTVYSWISKK 30

		           S+ EIA+  GV++  +Y     K

		Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDK 55

		

		

		>SHIGARICIN#Ribosome inactivating protein family signature.

		          Length = 289

		

		 Score = 29.4 bits (66), Expect = 0.018

		 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

		

		Query: 117 PDVPVVSTLDAVEQVAAKVRTDWQLGMNPLPDLIDLL-------ESKGILVIVSNVPQAD 169

		             +P     + ++  A K+R +  LG+  L   I  L        +  ++V++ +  +A 

		Sbjct: 126 VTLPYSGNYERLQIAAGKIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQSTSEAA 185

		

		Query: 170 KFDGLQAKIS 179

		           ++  ++ +I 

		Sbjct: 186 RYKFIEQQIG 195

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  183 bits (466), Expect = 2e-57

		 Identities = 88/357 (24%), Positives = 149/357 (41%), Gaps = 50/357 (14%)

		

		Query: 1   MKILVTGGAGFIGSAVIRHIINDTRDSVINLDKLT--YAGNL-ESLHEVSSSERYVFEQV 57

		           MK LVTG AGFIG  V + ++ +    V+ +D L   Y  +L ++  E+ +   + F ++

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLL-EAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 58  DICDRTELDRVFAVYKPDAVMHLAAESHVDRSIDGPATFIQTNIVGTYNLLEASRAYWSN 117

		           D+ DR  +  +FA    + V        V  S++ P  +  +N+ G  N+LE  R     

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--K 117

		

		Query: 118 LEENEKARFRFHHISTDEVYGDLEGTEDLFTESTSYS-PSSPYSASKASSDHLVRAWQRT 176

		           ++          + S+  VYG     +  F+   S   P S Y+A+K +++ +   +   

		Sbjct: 118 IQ-------HLLYASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHL 168

		

		Query: 177 YGLPTLVTNCSNNYGPYHFPEKLIPLMILNALEGKPLPVYGDGMQIRDWLFVEDHARALY 236

		           YGLP         YGP+  P+  +       LEGK + VY  G   RD+ +++D A A+ 

		Sbjct: 169 YGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228

		

		Query: 237 KAV------------------TEGGVGETYNIGGHNEKANIEVVKTLCALLEEYRPNKPA 278

		           +                            YNIG  +    ++ ++ L   L         

		Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL--------- 279

		

		Query: 279 GIDAYESLITYVKDRPGHDVR--YAIDASKIERELGWKPEETFESGIRKTVEWYLAN 333

		           GI+A       +  +PG DV    A D   +   +G+ PE T + G++  V WY   

		Sbjct: 280 GIEA---KKNMLPLQPG-DVLETSA-DTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 54.4 bits (131), Expect = 1e-10

		 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 28/175 (16%)

		

		Query: 1   MRVLIVGSSGQLG-HCLVRSLQTEHDILALD-------------RQQL-----------D 35

		           M+ L+ G++G +G H   R L+  H ++ +D             R +L           D

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 36  ICEEQAVEKVFATFQPQFVINAAAYTAVDKAESEPEMAYRVNEEGPKLLAQECHHHGCP- 94

		           + + + +  +FA+   + V  +    AV  +   P      N  G   + + C H+    

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

		

		Query: 95  LVHISTDYVFDGDKNGLYCEDDRPA-PGNIYGMSKLAGEHAVQHACSQYYILRTS 148

		           L++ S+  V+  ++   +  DD    P ++Y  +K A E  + H  S  Y L  +

		Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPAT 174

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 44.2 bits (104), Expect = 8e-08

		 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

		

		Query: 100 YKYSRFKYPWFNP---EEKDLFYKTWLKKAVLGQFDDVCIIFRQKKTISGFVTLKLSSN- 155

		           Y   RF  P+F     ++ D+ Y     KA    + +   I R          +K+ SN 

		Sbjct: 37  YTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGR----------IKIRSNW 86

		

		Query: 156 --SATIGLIGVNDLSRGQGIGCKLIQCCESYLVNKNIQLIHVATQTSNVAAINLYIKNDF 213

		              A I  I V    R +G+G  L+     +    +   + + TQ  N++A + Y K+ F

		Sbjct: 87  NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146

		

		Query: 214 LVENTSVWLYK 224

		           ++      LY 

		Sbjct: 147 IIGAVDTMLYS 157

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 46.3 bits (110), Expect = 9e-08

		 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

		

		Query: 34  RFLVLGGAGSIGQAVTKEIFKRHPQKLHVVDISENNMVELVRDIRSSFGYIDGDFQTFAL 93

		           ++LV G AG IG  V+K + +   Q + + ++++   V L +            FQ   +

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA--QPGFQFHKI 59

		

		Query: 94  DIGSIEYDAFIMADGQYDYVLNLSALKHVR-SEKDPFTLMRMIDVNVFNTDKTIQQSIDA 152

		           D+   E    + A G ++ V        VR S ++P       D N+      ++     

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAY---ADSNLTGFLNILEGCRHN 116

		

		Query: 153 GVKKYFCVST---------------DKAANPVNMMGASKRIMEMFLMRKSEQIAISTA-- 195

		            ++     S+               D   +PV++  A+K+  E+     S    +     

		Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176

		

		Query: 196 RFANVAFSDGS---LLHGFNQRIQKNQPIVAPND 226

		           RF  V    G     L  F + + + + I   N 

		Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNY 210

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 68.2 bits (166), Expect = 1e-15

		 Identities = 56/270 (20%), Positives = 100/270 (37%), Gaps = 33/270 (12%)

		

		Query: 5   LNNKTILVAGAGGLLGTRLVPALLKQGAKVIAADIHVEAMRERLSSLGVDLQDKKLCCCE 64

		           +  K   + GA   +G  +   L  QGA + A D + E + + +SSL    + +      

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL--KAEARHAEAFP 63

		

		Query: 65  LDVTKEESVKAFFNK---QAQHIDGAVNSTYPRNKTYGKHFFDVSLDSFNENLSLHLGSA 121

		            DV    ++     +   +   ID  VN               +S + +    S++    

		Sbjct: 64  ADVRDSAAIDEITARIEREMGPIDILVNVA---GVLRPGLIHSLSDEEWEATFSVNSTGV 120

		

		Query: 122 FLFTQQCAAYFKLQQQPFSLVNISSIYGVVAPKFEIYNNTPMTMPVEYAAIKSAIQHLNK 181

		           F  ++  + Y   ++   S+V + S               P T    YA+ K+A     K

		Sbjct: 121 FNASRSVSKYMMDRRSG-SIVTVGSNPA----------GVPRTSMAAYASSKAAAVMFTK 169

		

		Query: 182 YVVSYVNDSRFRINCVSPGGI-FDHQPEAFLQAYKEKTHGAGMLDV-------------E 227

		            +   + +   R N VSPG    D Q   +      +    G L+               

		Sbjct: 170 CLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPS 229

		

		Query: 228 EVVGSVLFLLSEQSRYVTGQNIVVDDGFSL 257

		           ++  +VLFL+S Q+ ++T  N+ VD G +L

		Sbjct: 230 DIADAVLFLVSGQAGHITMHNLCVDGGATL 259

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 89.8 bits (223), Expect = 1e-22

		 Identities = 78/358 (21%), Positives = 133/358 (37%), Gaps = 88/358 (24%)

		

		Query: 2   IIVTGGAGMIGSNIVKALNEIGINDILVVDN--------LKNGR----KFKN--LVDLDI 47

		            +VTG AG IG ++ K L E G + ++ +DN        LK  R             +D+

		Sbjct: 3   YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 48  TDYMDRDDFLTQIMAGDNFGPIEAVFHEGACSATTEWDGKYMMLNNYEYSK-------EL 100

		            D     + +T + A  +F   E VF      A      +Y + N + Y+         +

		Sbjct: 62  ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109

		

		Query: 101 LHYCLEREIP-FLYASSAATYG--ETTVFKEEREYEGALNVYGYSKQQFDNYVRRLWQDA 157

		           L  C   +I   LYASS++ YG      F  +   +  +++Y  +K+             

		Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKA-----------N 158

		

		Query: 158 EEHGETLSQI-----TGFRYFNVYGPREQHKGSMASVAFHLNNQILAGENPKLFAGSEQF 212

		           E    T S +     TG R+F VYGP    +  MA   F     +L G++  ++   +  

		Sbjct: 159 ELMAHTYSHLYGLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVYNYGKM- 213

		

		Query: 213 KRDFIYVGDVCKVNL------------WFMQNGVSG-------IFNCGTGNAESFEEVAK 253

		           KRDF Y+ D+ +  +            W ++ G          ++N G  +     +  +

		Sbjct: 214 KRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQ 273

		

		Query: 254 AVIKHHG-KGEIETIPFPEHLKGAYQEFTQADLTKLRAAGCDVEFK---NVAEGVAEY 307

		           A+    G + +   +P            T AD   L      + F     V +GV  +

		Sbjct: 274 ALEDALGIEAKKNMLPLQP----GDVLETSADTKALYE---VIGFTPETTVKDGVKNF 324

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  100 bits (251), Expect = 4e-26

		 Identities = 73/367 (19%), Positives = 120/367 (32%), Gaps = 68/367 (18%)

		

		Query: 7   LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDRHD--DNPKFFLHYG 64

		           L+TG  G  G ++++ LLE G++V GI     + N      + Q R +    P F  H  

		Sbjct: 4   LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 65  DLTDTSNLTRILKEVQPDEVYNLGAQSHVAVSFEAPEYTADVDAIGTLRLLEAIRFLGLE 124

		           DL D   +T +      + V+    +  V  S E P   AD +  G L +LE  R   ++

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119

		

		Query: 125 KKTKFYQASTSELYGEVQEIPQKETTPF-YPRSPYAVAKMYAYWITVNYRESYGMYACNG 183

		                  AS+S +YG  +++P        +P S YA  K     +   Y   YG+ A   

		Sbjct: 120 ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176

		

		Query: 184 ILFNHESPRRGETFVTRKITRGLANISQGLEKCLYLGNMDALRDWGHAKDYVRMQWMMLQ 243

		             F    P         K T+    + +G    +Y       RD+ +  D       +  

		Sbjct: 177 RFFTVYGPWGRPDMALFKFTK---AMLEGKSIDVY-NYGKMKRDFTYIDDIAEAIIRLQD 232

		

		Query: 244 QVTPED-------------------FVIATGRQISVREFVSLSAKELGITLEFSGEGIDE 284

		            +   D                   + I     + + +++      LGI           

		Sbjct: 233 VIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI----------- 281

		

		Query: 285 IATVVSIDGENAQVLKVGDVIVRVDPRY--FRPAEVETLLGDPTKAKEKLGWEPEITVEE 342

		                                          +P +V     D     E +G+ PE TV++

		Sbjct: 282 ----------------------EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKD 319

		

		Query: 343 MCAEMVQ 349

		                V 

		Sbjct: 320 GVKNFVN 326

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 77.5 bits (191), Expect = 3e-18

		 Identities = 63/354 (17%), Positives = 133/354 (37%), Gaps = 67/354 (18%)

		

		Query: 19  TVFVAGHTGMVGSAIVRKLKQSNDIKVI-------------TKSRAEL-----------N 54

		              V G  G +G  + ++L ++   +V+              ++R EL           +

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 55  LLDQQAVRTFFEENQIDQVYLAAAKVGGIVANNTYPAEFIYENLTIQSNIIHSAHLSGVN 114

		           L D++ +   F     ++V+++  +   +  +   P  +   NLT   NI+     + + 

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119

		

		Query: 115 DLLFLGSSCIYPKFAEQPMTETALLTGVLEPTNEP---YAIAKIAGIKLCESYNRQYGHN 171

		            LL+  SS +Y    + P +         +  + P   YA  K A   +  +Y+  YG  

		Sbjct: 120 HLLYASSSSVYGLNRKMPFSTD-------DSVDHPVSLYAATKKANELMAHTYSHLYG-- 170

		

		Query: 172 YRSVMPT------NLYGENDNFHPENSHVIPALIRRFHEAKLAGDGKVVAWGTGKPRREF 225

		               +P        +YG      P+        + +F +A L G    V +  GK +R+F

		Sbjct: 171 ----LPATGLRFFTVYGPWGR--PD------MALFKFTKAMLEGKSIDV-YNYGKMKRDF 217

		

		Query: 226 LHVNDMAEASIHVMNLDSKKYSVNTQEMLSH---------INVGTGVDCTIRELVETVAK 276

		            +++D+AEA I + ++     +  T E  +           N+G      + + ++ +  

		Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277

		

		Query: 277 VVGFEGVIEFDVTKPDGTPRKLMDVSRLKS-LGWEYSISLEVGLRDTYGWFLAN 329

		            +G E        +P        D   L   +G+    +++ G+++   W+   

		Sbjct: 278 ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331

		

		

		>BONTOXILYSIN#Bontoxilysin signature.

		          Length = 1196

		

		 Score = 30.3 bits (68), Expect = 0.010

		 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 22/59 (37%)

		

		Query: 145 FDCFTINGTKKQSVDTI---------------------EFVKQIQTLGAGEIVLNFIDN 182

		           F  ++ +    Q +D++                      FV++ Q  GA   +++  DN

		Sbjct: 566 FKNYSFDINLTQEIDSMCGINEVVLWFGKALNILNTSNSFVEEYQDSGAI-SLISKKDN 623

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 28.5 bits (63), Expect = 0.043

		 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

		

		Query: 1   MKHTLNLIALASITSMMGISSSALAADKTLTIYTYDSFASDWGPGPTVEKAFEAQCGCDV 60

		           +K    ++AL+++T+MM  S+SALA  +   +  + +    +     V K FE   G  V

		Sbjct: 3   IKTGARILALSALTTMM-FSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKV 61

		

		Query: 61  NFVALDDGVSILNRLRLEGSNTKADIVLGLDNNLMAEAKATGLLAQHQVETTAITLPNGW 120

		                D       ++   G     DI+    +     A+ +GLLA+          P+  

		Sbjct: 62  TVEHPDKLEEKFPQVAATGDG--PDIIFWAHDRFGGYAQ-SGLLAE--------ITPDKA 110

		

		Query: 121 ADDTFIPYDYGY----------------FAFVYNKGKLANPPKSLKELVESRDDLKV 161

		             D   P+ +                   + +YNK  L NPPK+ +E+     +LK 

		Sbjct: 111 FQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKA 167

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 29.3 bits (65), Expect = 0.014

		 Identities = 10/18 (55%), Positives = 11/18 (61%)

		

		Query: 30  LMGPSGAGKSTLLALLAG 47

		           L G  G GKSTL+  L G

		Sbjct: 601 LEGTGGIGKSTLINTLVG 618

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  112 bits (281), Expect = 4e-32

		 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 15/259 (5%)

		

		Query: 3   LNSFNLQGKVAIVTGCDTGLGQGMALGLANAGCDIVGVNIVEPTETIALIEQT----GRK 58

		           +N+  ++GK+A +TG   G+G+ +A  LA+ G  I  V+     E +  +  +     R 

		Sbjct: 1   MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDY--NPEKLEKVVSSLKAEARH 58

		

		Query: 59  FVDVRANLMKLDDIPAIVDRAVTEFGRIDILVNNAGIIRRNDAIDFSEQDWDDVMNINVK 118

		                A++     I  I  R   E G IDILVN AG++R       S+++W+   ++N  

		Sbjct: 59  AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118

		

		Query: 119 SVFFLSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTTSKSGVMGVTRLMANEWAK 178

		            VF  S++V+K  + +   G I+ + S  +      + +Y +SK+  +  T+ +  E A+

		Sbjct: 119 GVFNASRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177

		

		Query: 179 HNINVNAIAPGYMATNNTTALRADETRNKEILD--------RIPAGRWGEPSDLAGPCVF 230

		           +NI  N ++PG   T+   +L ADE   ++++          IP  +  +PSD+A   +F

		Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237

		

		Query: 231 LASSASNYINGYTIAVDGG 249

		           L S  + +I  + + VDGG

		Sbjct: 238 LVSGQAGHITMHNLCVDGG 256

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 51.4 bits (123), Expect = 6e-12

		 Identities = 15/20 (75%), Positives = 18/20 (90%)

		

		Query: 2   KLGRNDPCHCGSGKKFKRCC 21

		           K+GRNDPC CGSGKK+K+C 

		Sbjct: 878 KVGRNDPCPCGSGKKYKQCH 897

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 1344 bits (3481), Expect = 0.0

		 Identities = 652/907 (71%), Positives = 769/907 (84%), Gaps = 8/907 (0%)

		

		Query: 1   MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETL 60

		           M+ KLLTKV GSRNDRTLRR+RK+V  IN  EP  E LSDE+LK KT EFR RLE+GE L

		Sbjct: 1   MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60

		

		Query: 61  DQLLPEAFATVREASKRVYGMRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNA 120

		           + L+PEAFA VREASKRV+GMRHFDVQL+GGMVLN   IAEMRTGEGKTLTATLPAYLNA

		Sbjct: 61  ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120

		

		Query: 121 LAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPNMPHPAKKEAYQADILYGTNN 180

		           L GKGVH+VTVNDYLA+RDAE NRPLFEFLG+TVGIN+P MP PAK+EAY ADI YGTNN

		Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180

		

		Query: 181 EFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN 240

		           E+GFDYLRDNMAF  E+RVQR+  +A+VDEVDSILIDEARTPLIISGPAEDSSE+Y R+N

		Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240

		

		Query: 241 ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYS 300

		            +IP L +Q+KEDSE ++G+GH++VDEKS+QV+LTE G   +EEL+VK G+M+EG++LYS

		Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300

		

		Query: 301 PTNISLLHHVNAALRAHVLFEKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEA 360

		           P NI L+HHV AALRAH LF ++VDYIV +DGEV+IVDEHTGRTM GRRWS+GLHQAVEA

		Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359

		

		Query: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQSIYGLETVVIPTNKPMI 420

		           KEGV+IQNENQTLASITFQNYFRLYEKL+GMTGTADTEAFEF SIY L+TVV+PTN+PMI

		Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419

		

		Query: 421 RNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL 480

		           R D+PD+VY TEAEK  AIIEDIK R  KGQPVLVGT+SIEKSEL+SN L KA IKHNVL

		Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479

		

		Query: 481 NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKA 540

		           NAKFH  EA IVA+AG P AVTIATNMAGRGTDIVLGGSWQA+V ++ NPT EQI++IKA

		Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539

		

		Query: 541 EWKLVHDQVLESGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFT 600

		           +W++ HD VLE+GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED+L+RIF 

		Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599

		

		Query: 601 SDRMAALIQS-GMEEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVV 659

		           SDR++ +++  GM+ GEAIE   ++++I  AQRKVE RNFDIRKQLLEYDDVANDQR+ +

		Sbjct: 600 SDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAI 659

		

		Query: 660 YELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAP 719

		           Y  R+EL+ V D+S+ I   R DV +  ID YIPPQSLE+MWD+ GLQERLKNDFD+D P

		Sbjct: 660 YSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLP 719

		

		Query: 720 VKQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHL 779

		           + +WL+++ +L+EE LRE+++  ++EVY+ KEEVVGA+++R+FEK VMLQTLD+LWKEHL

		Sbjct: 720 IAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHL 779

		

		Query: 780 AAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVER 839

		           AAMD+LRQGIHLRGYAQK+PKQEYKRESF +F  +LE+LK +V+  LSKV+V+  EEVE 

		Sbjct: 780 AAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEE 839

		

		Query: 840 MEAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVRDERKVGRNEPCPCGSGKKY 899

		           +E QRR +AE  A+  Q  H    S  A              ERKVGRN+PCPCGSGKKY

		Sbjct: 840 LEQQRRMEAERLAQMQQLSHQDDDSAAAAA------LAAQTGERKVGRNDPCPCGSGKKY 893

		

		Query: 900 KQCHGQI 906

		           KQCHG++

		Sbjct: 894 KQCHGRL 900

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 32.7 bits (74), Expect = 0.005

		 Identities = 10/35 (28%), Positives = 19/35 (54%)

		

		Query: 116  DELFIGIDVFAGRSAMRMNANAVREAHRHLAQGGV 150

		            +  ++GID+  G+   ++  N   +  RH AQ G+

		Sbjct: 1371 NHWYLGIDLGYGKFQSKLQTNHNAKFARHTAQFGL 1405

		

		

		>INFPOTNTIATR#Macrophage infectivity potentiator signature.

		          Length = 233

		

		 Score = 31.5 bits (71), Expect = 7e-04

		 Identities = 15/41 (36%), Positives = 20/41 (48%)

		

		Query: 99  AVIFGLASAAAIAAHKVATLNPDYEIAKYPLADKLVVNFKK 139

		           A I GLA + A+AA    +L  D +   Y +   L  NFK 

		Sbjct: 8   AAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKN 48

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 31.9 bits (72), Expect = 7e-04

		 Identities = 9/32 (28%), Positives = 14/32 (43%)

		

		Query: 99  NVNVMEEMANMISASRAYQTNVQVADASKQML 130

		            VN+ EE  N+    + Y  N QV   +  + 

		Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIF 539

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 39.2 bits (91), Expect = 3e-05

		 Identities = 15/33 (45%), Positives = 21/33 (63%)

		

		Query: 3  YVSLSGLSAAQLDLNTTSNNIANANTYGFKESR 35

		            ++SGL+AAQ  LNT SNNI++ N  G+    

		Sbjct: 5  NNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37

		

		

		

		 Score = 34.5 bits (79), Expect = 8e-04

		 Identities = 11/49 (22%), Positives = 26/49 (53%)

		

		Query: 386 TVSSGALEQSNIDMTQELVDLISAQRNFQANSRALEVHNQLQQNILQIR 434

		            +S+     S +++ +E  +L   Q+ + AN++ L+  N +   ++ IR

		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 43.0 bits (101), Expect = 7e-07

		 Identities = 10/47 (21%), Positives = 22/47 (46%)

		

		Query: 214 EVRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISSVDKMMSFVNQ 260

		           ++       S VN+ EE  N+   Q+ Y  N++V+ + + +   +  

		Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544

		

		

		

		 Score = 36.9 bits (85), Expect = 6e-05

		 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

		

		Query: 5  LWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNTQLPS 64

		          +  + +GL+A Q  + T SNN+++ +  G+ +   +               +  N+ L +

		Sbjct: 4  INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTLGA 49

		

		Query: 65 GLMLGAGSKVVATQKVH 81

		          G  +G G  V   Q+ +

		Sbjct: 50 GGWVGNGVYVSGVQREY 66

		

		

		>FLGLRINGFLGH#Flagellar L-ring protein signature.

		          Length = 232

		

		 Score =  148 bits (374), Expect = 4e-46

		 Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 13/204 (6%)

		

		Query: 65  AWAPIHPKQQ--------PEHYAAETGSLFSVNHLSN-----LYDDSKPRGVGDIITVTL 111

		           AW P  P  Q        P       GS+F      N     L++D +PR +GD +T+ L

		Sbjct: 23  AWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVL 82

		

		Query: 112 DEKTNASKSANADLSKSNDSSMDPLEVGGQELKIDGKYNFSYNLTNSNNFTGDASAKQSN 171

		            E  +ASKS++A+ S+   ++     V      + G        +  N F G   A  SN

		Sbjct: 83  QENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASN 142

		

		Query: 172 SISGYITVEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDISFDNTIASNRVSN 231

		           + SG +TV V +VL NGNL + GEK + +N G E+IR SG + P  IS  NT+ S +V++

		Sbjct: 143 TFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVAD 202

		

		Query: 232 ARIQYSGTGTQQDMQEPGFLARFF 255

		           ARI+Y G G   + Q  G+L RFF

		Sbjct: 203 ARIEYVGNGYINEAQNMGWLQRFF 226

		

		

		>FLGPRINGFLGI#Flagellar P-ring protein signature.

		          Length = 373

		

		 Score =  418 bits (1077), Expect = e-148

		 Identities = 163/365 (44%), Positives = 223/365 (61%), Gaps = 12/365 (3%)

		

		Query: 5   TLLLLCFVLPMTSAYAARIKDVAQVAGVRSNQLVGYGLVSGLPGTGES---TPFTEQSFA 61

		              L     P   A  +RIKD+A +   R NQL+GYGLV GL GTG+S   +PFTEQS  

		Sbjct: 13  FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72

		

		Query: 62  AMLQNFGIQLPAGTKPKIKNVAAVMVTAELPPFSKPGQQIDVTVSSIGSAKSLRGGTLLQ 121

		           AMLQN GI    G     KN+AAVMVTA LPPF+ PG ++DVTVSS+G A SLRGG L+ 

		Sbjct: 73  AMLQNLGITTQGGQ-SNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIM 131

		

		Query: 122 TFLKGLDGQVYAVAQGNLVVSGFSAEGADGSKIVGNNPTVGIISSGAMVEREVPTPFGRG 181

		           T L G DGQ+YAVAQG L+V+GFSA+G D + +     T   + +GA++ERE+P+ F   

		Sbjct: 132 TSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKDS 190

		

		Query: 182 DFITFNLLESDFTTAQRMADAVNNF----LGPQMASAVDATSVRVRAPRDISQRVAFLSA 237

		             +   L   DF+TA R+AD VN F     G  +A   D+  + V+ PR ++     ++ 

		Sbjct: 191 VNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMAE 249

		

		Query: 238 IENLEFDPADGAAKIIVNSRTGTIVVGKHVRLKPAAVTHGGMTVAIKENLSVSQPNGFSG 297

		           IENL  +  D  AK+++N RTGTIV+G  VR+   AV++G +TV + E+  V QP  FS 

		Sbjct: 250 IENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSR 308

		

		Query: 298 GETVVVPNSDISVTEEQGKMFKFEPGLTLDDLVRAVNQVGAAPSDLMAILQALKQAGAIE 357

		           G+T V P +DI   +E  K+   E G  L  LV  +N +G     ++AILQ +K AGA++

		Sbjct: 309 GQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQ 367

		

		Query: 358 GQLII 362

		            +L++

		Sbjct: 368 AELVL 372

		

		

		>FLGFLGJ#Flagellar protein FlgJ signature.

		          Length = 313

		

		 Score =  270 bits (692), Expect = 3e-92

		 Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 20/299 (6%)

		

		Query: 13  DISNLDKLRQQAVNDKDGGEQKALEAAAKQFESIFTSMLFKSMREANSGFESDLMNSQNQ 72

		           D  +L++L+ +A  D        +   A+Q E +F  M+ KSMR+A    +  L +S++ 

		Sbjct: 14  DAQSLNELKAKAGEDPAAN----IRPVARQVEGMFVQMMLKSMRDALP--KDGLFSSEHT 67

		

		Query: 73  LFYRQMLDEQMASELSSSGSLGLADMIVAQLSSGKGIDKNELAMREAGQEAPQRMPINRS 132

		             Y  M D+Q+A ++++   LGLA+M+V Q++  + + +            P + P+  +

		Sbjct: 68  RLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAA------PMKFPL-ET 120

		

		Query: 133 KARETEQRLIESGQLARS----DKARFDSPESFITSMRPYAERAAKSLGVEPSLLLAQAA 188

		             R   Q L +  Q A      D    DS ++F+  +   A+ A++  GV   L+LAQAA

		Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDSLPGDS-KAFLAQLSLPAQLASQQSGVPHHLILAQAA 179

		

		Query: 189 LETGWGQKVVKNARGS-SNNLFNIKADRSWAGDKVTTQTLEFHDNTPVKETAAFRSYDSF 247

		           LE+GWGQ+ ++   G  S NLF +KA  +W G      T E+ +    K  A FR Y S+

		Sbjct: 180 LESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSY 239

		

		Query: 248 ADSFNDYVAFLNNNPRYQTALQHNGDSESFIRGIHRAGYATDPEYADKVLKVQQRIDNM 306

		            ++ +DYV  L  NPRY  A+     +E   + +  AGYATDP YA K+  + Q++ ++

		Sbjct: 240 LEALSDYVGLLTRNPRY-AAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSI 297

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score =  467 bits (1203), Expect = e-161

		 Identities = 113/457 (24%), Positives = 209/457 (45%), Gaps = 17/457 (3%)

		

		Query: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQATNDPRQFGGSTYGMGVHVE 62

		           S L+N     +  AQ  LNT  +NIS+ N  GY+RQ+ I A  +     G   G GV+V 

		Sbjct: 1   SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60

		

		Query: 63  NVRRSWDQFAVNELNLSTTNFANKGDVEANLEMLSSMLSSVASKKIPENLNEWFDALKTL 122

		            V+R +D F  N+L  + T  +        +  + +MLS+ ++  +   + ++F +L+TL

		Sbjct: 61  GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLST-STSSLATQMQDFFTSLQTL 119

		

		Query: 123 ADSPNDIGARKVLLEKARIISETVNGFHETIRQQYDVTNKKLDMGIERINQIAVEIRDIH 182

		             +  D  AR+ L+ K+  +        + +R Q    N  +   +++IN  A +I  ++

		Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 179

		

		Query: 183 RLMMRTPG-----PHNDLMDQHEKLVKELSEYTKVTVTPRKNAEGFNVHIGNGHTLVSGT 237

		             + R  G       N+L+DQ ++LV EL++   V V+ +     +N+ + NG++LV G+

		Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGT-YNITMANGYSLVQGS 238

		

		Query: 238 EASQLKMIDGYPDVHQRRLAIYEG--KSLKPIKSVGLDGKLGAMLDMRDKQIPYVMDELG 295

		            A QL  +    D  +  +A  +G   +++  + +   G LG +L  R + +    + LG

		Sbjct: 239 TARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 298

		

		Query: 296 RMAAGFSDEVNKLQKQGLDLRGNIGGVIFTDVNAEVIAKSRAVTAPDSQAEVAV--FIND 353

		           ++A  F++  N   K G D  G+ G   F       I K   +    ++ +VA+   + D

		Sbjct: 299 QLALAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTD 352

		

		Query: 354 LASLKGGEYALRYDGSNYTVTKPSGETVSVSLDSAKSAFYMDGMRVEVRNEPKAGEKILL 413

		            +++   +Y + +D + + VT+ +  T       A      DG+ +     P   +   L

		Sbjct: 353 ASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTL 412

		

		Query: 414 RPTRNSAAQMQVATNDASMIAAQSYEASTSFAQGTAQ 450

		           +P  ++   M V   D + IA  S E +        Q

		Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQ 449

		

		

		

		 Score =  133 bits (335), Expect = 5e-35

		 Identities = 33/105 (31%), Positives = 59/105 (56%)

		

		Query: 534 EGDNGNLRKMQQIQLDKKMDGNQSTIIDVYHNLNTNVGLRNSTATRLANIAQHENEAAQE 593

		           + DN N + +  +Q + K  G   +  D Y +L +++G + +T    +    +       

		Sbjct: 442 DSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSN 501

		

		Query: 594 RIASISGVNLDEEAANMMRFQQAYMASSRIMQAANDTFNTILQLR 638

		           +  SISGVNLDEE  N+ RFQQ Y+A+++++Q AN  F+ ++ +R

		Sbjct: 502 QQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 32.7 bits (74), Expect = 0.003

		 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

		

		Query: 9   HNYQSV--QNDLRRMENKIHHNQAQLASGKKLLSPSDDPLATHYIQNIGQQSEQLKQYLD 66

		            N  S+  QN+L + ++ +     +L+SG ++ S  DD              + L Q   

		Sbjct: 6   TNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65

		

		Query: 67  AIVLVRNRLEQHEVNVANQEQFADEAKRTVMEMINGALSPEDRRAKRREIEELATNFLYL 126

		                 +  +  E  +          +   ++  NG  S  D ++ + EI++       +

		Sbjct: 66  NANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 125

		

		Query: 127 ANAQDESGNYTFAGT 141

		           +N    +G    +  

		Sbjct: 126 SNQTQFNGVKVLSQD 140

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  179 bits (454), Expect = 2e-53

		 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 10/370 (2%)

		

		Query: 2   AVTVSTNVSAMTAQRYLNKATDELNTSMERLSSGHKINSAKDDAAGLQISNRLTAQSRGL 61

		           A  ++TN  ++  Q  LNK+   L++++ERLSSG +INSAKDDAAG  I+NR T+  +GL

		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

		

		Query: 62  DVAMRNANDGISIAQTAEGAMNEATAVLQRMRDLSIQSANGTNSTSERQAIHEEASALQD 121

		             A RNANDGISIAQT EGA+NE    LQR+R+LS+Q+ NGTNS S+ ++I +E     +

		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

		

		Query: 122 EINRIAETTSFGGRRLLNGTFGDAAFQIGSNSGEAMIMGLTSIRADDFRMGGTTFQSENG 181

		           EI+R++  T F G ++L+        Q+G+N GE + + L  I      + G        

		Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179

		

		Query: 182 KNKDWEVSADNAELNIVLPEMGEDEDGNVIDLEINIMAKSGDDIEELATYINGQSDYINA 241

		                  S+             +          +++ + +        T  +        

		Sbjct: 180 ATVGDLKSSFKNVTGY------DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233

		

		Query: 242 SVSEDGKLQIFVAQPNVKGDISISGSLASELGLSDEPIATTVQDLDLRTVQGSQNAISVI 301

		                   +   A    K   S +G+  ++               D + V  + +  +  

		Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293

		

		Query: 302 DAALK---YVDSQRADLGAKQNRLSHSINNLANVQENVDASNSRIKDTDFAKETTQMTKA 358

		           D   K    ++ ++  L         +  + A +Q + +   S +       + T+   A

		Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353

		

		Query: 359 QILQQAGTSI 368

		           ++      + 

		Sbjct: 354 KLSDLEANNA 363

		

		

		

		 Score =  124 bits (313), Expect = 1e-33

		 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

		

		Query: 160 GLTSIRADDFRMGGTTFQSENGKNKDWEVSADNAELNIVLPEMGEDEDGNVIDLEINIMA 219

		           G       D++    T  ++ G + + +VS       + L         ++     N+ A

		Sbjct: 271 GGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTL------TVADITAGAANVDA 324

		

		Query: 220 KSGDDIEEL-ATYINGQSDYINASVSEDGKLQIFVAQPNVKGDISISGSLASELGLSDEP 278

		            +    + +  + +NGQ  + + + +E  KL    A   VKG+  I+ + A     +   

		Sbjct: 325 ATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGD 384

		

		Query: 279 -----------------IATTVQDLDLRTVQGSQNAISVIDAALKYVDSQRADLGAKQNR 321

		                            ++T + +      + + N ++ ID+AL  VD+ R+ LGA QNR

		Sbjct: 385 KVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444

		

		Query: 322 LSHSINNLANVQENVDASNSRIKDTDFAKETTQMTKAQILQQAGTSILAQAKQLPNSAMS 381

		              +I NL N   N++++ SRI+D D+A E + M+KAQILQQAGTS+LAQA Q+P + +S

		Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLS 504

		

		Query: 382 LLQ 384

		           LL+

		Sbjct: 505 LLR 507

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  192 bits (490), Expect = 6e-59

		 Identities = 90/297 (30%), Positives = 148/297 (49%), Gaps = 2/297 (0%)

		

		Query: 2   AVNVNTNVAAMTAQRYLNNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGL 61

		           A  +NTN  ++  Q  LN + S+  +++ERLSSG +INSAKDDAAG  I+NR     +GL

		Sbjct: 1   AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

		

		Query: 62  DVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEVTALND 121

		             A RNANDGISIAQT EGA+NE  N LQR+R+LS+Q+ NG+NS S+  +IQ+E+    +

		Sbjct: 61  TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

		

		Query: 122 ELNRIAETTSFGGNKLLNGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEG 181

		           E++R++  T F G K+L+       +Q+GA++GE + + L+ +   ++ + G +    + 

		Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179

		

		Query: 182 KDKNWNVAAGDNDLTIALTDSFGNEQEIEINAKAGDDIEELATYINGQTDLVKASVGEGG 241

		                  ++  N           N+  +++N+ A        T  +              

		Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239

		

		Query: 242 KLQIFAGNNKVQGEIAFSGSLAGELGLGEGKNVTV-DTIDVTTVQGAQESVAIVDAA 297

		             +     +  +   + +G+   +   G  K     DT D   V    ++    D  

		Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296

		

		

		

		 Score =  130 bits (327), Expect = 9e-36

		 Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 21/377 (5%)

		

		Query: 19  NNANSAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTA 78

		           N      Q +  ++  G                  L +    ++         +  +   

		Sbjct: 132 NGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191

		

		Query: 79  EGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLL 138

		               +       + R      A  +++ +  V  +  V A N +L       +   +   

		Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251

		

		Query: 139 NGTYGTKAMQIGADNGEAVMLSLKDMRSDNVMMGGVSYQAEEGKDKNWNVAAGDNDLTIA 198

		                    +  A  G        D           +   + G D N  V+   N   + 

		Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG--VTFTIDTKTGNDGNGKVSTTINGEKVT 309

		

		Query: 199 LTDSFGNEQEIEINAKAGDDIEEL-ATYINGQTDLVKASVGEGGKLQIFAGNNKVQGEIA 257

		           LT +        ++A      + +  + +NGQ      +  E  KL     NN V+GE  

		Sbjct: 310 LTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESK 369

		

		Query: 258 FSGSLAGELGLGEGKNVTVD------------------TIDVTTVQGAQESVAIVDAALK 299

		            + + A       G  VT+                          +     +A +D+AL 

		Sbjct: 370 ITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALS 429

		

		Query: 300 YVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTQLTKTQILSQASS 359

		            VD+ R+ LGA QNRF+ AI+NL N   N+N+++SRI+D D+A E + ++K QIL QA +

		Sbjct: 430 KVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGT 489

		

		Query: 360 SILAQAKQAPNSALSLL 376

		           S+LAQA Q P + LSLL

		Sbjct: 490 SVLAQANQVPQNVLSLL 506

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score =  157 bits (397), Expect = 2e-45

		 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 3/293 (1%)

		

		Query: 5   NTNVSAMVAQRHLSTAASQVAETQKNLSSGFRINSASDDAAGMQIANTLHVQTRGLDVAL 64

		           NTN  +++ Q +L+ + S ++   + LSSG RINSA DDAAG  IAN      +GL  A 

		Sbjct: 5   NTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAS 64

		

		Query: 65  TNAHSAYAVAETAEGALEEGSEILQRLRSLSLQAANGSNSDEDRQSLQLEVVVLKDEVER 124

		            NA+   ++A+T EGAL E +  LQR+R LS+QA NG+NSD D +S+Q E+    +E++R

		Sbjct: 65  RNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDR 124

		

		Query: 125 IARTTTFAGKNLFDGSYGSKSFHLGANSNS-ISLQLKNMRTHIPEMGGYHYLASEPADED 183

		           ++  T F G  +           +GAN    I++ L+ +      + G++    + A   

		Sbjct: 125 VSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183

		

		Query: 184 WQVDKESRQLSFTFRDSEGDDQSIKISLKPGDSLEEVATYINSQQ-NVVESSVTDDRRLQ 242

		                      +       +   + ++     +     T  +    N     +T D    

		Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243

		

		Query: 243 FYVANRHAPDGLNISGSLEGELDFEPQGQVTLDELDISSVGGAQLAIAVVDTA 295

		               +           +    +    +G    D  D   V          D  

		Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296

		

		

		

		 Score =  105 bits (262), Expect = 5e-27

		 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 19/213 (8%)

		

		Query: 181 DEDWQVDKESRQLSFTFRDSEGDDQSIKISLKPGDSLEE-VATYINSQQNVVESSVTDDR 239

		           D + +V         T   ++    +  +      S +    + +N Q    + +  +  

		Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353

		

		Query: 240 RLQFYVANRHAPDGLNISGSLEGELDFEPQGQVTLD------------------ELDISS 281

		           +L    AN        I+ +           +VTL                   E   ++

		Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413

		

		Query: 282 VGGAQLAIAVVDTAIQYLDSHRSEIGSFQNRVEGTMDNLQSINRNVTESKGRIWDTDFAK 341

		                  +A +D+A+  +D+ RS +G+ QNR +  + NL +   N+  ++ RI D D+A 

		Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473

		

		Query: 342 ASTALVKSQVLQQATSALLAQAKQAPGSAIGLL 374

		             + + K+Q+LQQA +++LAQA Q P + + LL

		Sbjct: 474 EVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score =  752 bits (1943), Expect = 0.0

		 Identities = 282/571 (49%), Positives = 407/571 (71%), Gaps = 2/571 (0%)

		

		Query: 1   MISGILASPGIAIGKALLLQEDEIVLNTNTITEAQVEAEVQRFYDARSKSSAQLETIKQK 60

		            I+GI AS G+AI KA +  E  + +   +IT+  V  E+++   A  KS  +L  IK +

		Sbjct: 4   KITGIAASSGVAIAKAFIHLEPNVDIEKTSITD--VSTEIEKLTAALEKSKEELRAIKDQ 61

		

		Query: 61  ALETFGEEKEAIFEGHIMLLEDEELEEEILALIKKEKMTADNAIYTVIEEQATALESLDD 120

		              + G +K  IF  H+++L+D EL + I   I+ E+M A+ A+  V +   +  ES+D+

		Sbjct: 62  TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121

		

		Query: 121 EYLKERATDIRDIGSRFVKNALGINIVSLSDINEQVILVAYDLTPSETAQINLDYVLGFA 180

		           EY+KERA DIRD+  R + + +G+   SL+ I E+ +++A DLTPS+TAQ+N  +V GFA

		Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181

		

		Query: 181 CDIGGRTSHTSIMARSLELPAIVGTNDITKKVKNGDMLILDAMNNKIIVNPSEAQIEEAK 240

		            DIGGRTSH++IM+RSLE+PA+VGT ++T+K+++GDM+I+D +   +IVNP+E +++  +

		Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241

		

		Query: 241 AVKASFLAEKEELAKLKDLHAETLDGHRVEVCGNIGTVKDCDGIIRNGGEGVGLYRTEFL 300

		             +A+F  +K+E AKL    + T DG  VE+  NIGT KD DG++ NGGEG+GLYRTEFL

		Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301

		

		Query: 301 FMDRDALPTEEEQYQAYKEVAEAMEGQAVIIRTMDIGGDKDLPYMDLPKEMNPFLGWRAV 360

		           +MDRD LPTEEEQ++AYKEV + M+G+ V+IRT+DIGGDK+L Y+ LPKE+NPFLG+RA+

		Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361

		

		Query: 361 RISLDRREILRDQLRGILRASAHGKLRIMFPMIISVEEIRALKEAIEEYKAELRAEGLAF 420

		           R+ L++++I R QLR +LRAS +G L++MFPMI ++EE+R  K  ++E K +L +EG+  

		Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421

		

		Query: 421 DENIEIGVMVETPAAAAVAHHLAKEVSFFSIGTNDLTQYTLAVDRGNEMISHLYNPLSPA 480

		            ++IE+G+MVE P+ A  A+  AKEV FFSIGTNDL QYT+A DR NE +S+LY P  PA

		Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481

		

		Query: 481 VLTVIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSGISIPKVKKVIRNA 540

		           +L ++  VI A+H+EGKW GMCGE+AGDE A  LLLG+GLDEFSMS  SI   +  +   

		Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541

		

		Query: 541 NFAAVKAMAEEALSLPTAAEIEACVEKFIAE 571

		           +   +K  A++AL L TA E+E  V+K   +

		Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKTYLK 572

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 46.7 bits (111), Expect = 6e-08

		 Identities = 60/345 (17%), Positives = 109/345 (31%), Gaps = 60/345 (17%)

		

		Query: 6   KRTLLGAAVASLAATGSANAAVQLAGDA-VQFYGQAAGYITVADSGDTTVVATTIESRIG 64

		           K++L+   +A+L     A+  +     A V+     A     A S +T      + S+IG

		Sbjct: 2   KKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIG 61

		

		Query: 65  FRGVVEFEDFSPKFVWQIEGGNADNGGFNPNEGWNHVNNGQLGARDTYLGFDFGKGGRFT 124

		           F+G  +  +   K +WQ+E   +  G            +   G R +++G   G  G+  

		Sbjct: 62  FKGQEDLGN-GLKAIWQVEQKASIAGT-----------DSGWGNRQSFIGLK-GGFGKLR 108

		

		Query: 125 YGRQLVAAYNYVDWPHSNPGLGNVFDWNNDIGAGYQDRASNNLRYDSANFGGFSFQATLS 184

		            GR      +  D         +  D+         +    ++RYDS  F G S     +

		Sbjct: 109 VGRLNSVLKDTGDIN----PWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYA 164

		

		Query: 185 GMESDIDGLVSSVGASYGNDVFNIHGGVYSRGEYGTGADLKYANSYGILGGSLYLGSLTL 244

		             ++       S  A +                   G  ++Y  +Y              

		Sbjct: 165 LNDNAGRHNSESYHAGFNYK--------------NGGFFVQYGGAYKRHH---------- 200

		

		Query: 245 TAAYKAMEADSATGTLKQNALSTTAQYVIDGKWVLKAGYAATDDAT----GDSKSSDTAV 300

		                  +        K       + Y  D   +  +      DA       S +S T V

		Sbjct: 201 -------QVQENVNIEKYQIHRLVSGY--DNDALYASVAVQQQDAKLVEENYSHNSQTEV 251

		

		Query: 301 TA----RLGYILPS-AYLYLDSRNYKMNEASDWTKAILAGVEYYF 340

		            A    R G + P  +Y +    ++     ++    ++ G EY F

		Sbjct: 252 AATLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDF 296

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 32.0 bits (72), Expect = 0.004

		 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

		

		Query: 189  VQPPADLTAAMNAQMKAERNKRAEVLEAEGVRQAQILRAEGQKQSEILKAEGEKQAAILQ 248

		            V PPA  T +   +  AE +K+    +     +        Q +    +A+   +A    

		Sbjct: 1025 VPPPAPATPSETTETVAENSKQES--KTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082

		

		Query: 249  AEARERAAEAEAKATA 264

		             E  +  +E +   T 

		Sbjct: 1083 NEVAQSGSETKETQTT 1098

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 73.5 bits (180), Expect = 2e-17

		 Identities = 49/185 (26%), Positives = 67/185 (36%), Gaps = 7/185 (3%)

		

		Query: 3   KWVLITGCSSGIGYVCAHALKKSGFEVIA----SCRHLHDVERLQSEGLTCIQ--LDLAD 56

		           K   ITG + GIG   A  L   G  + A      +    V  L++E         D+ D

		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68

		

		Query: 57  SNSISIAVQQALEISEGQLYGLFNNGAYGQPGALEDLPTDALRAQFESNFFGWHQLVREI 116

		           S +I     +        +  L N     +PG +  L  +   A F  N  G     R +

		Sbjct: 69  SAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127

		

		Query: 117 LPIMRKNKQGRIVQNSSVLGFAAMKYRGAYNASKFAIEGWSDTLRLELDGTNIHIAILEP 176

		              M   + G IV   S           AY +SK A   ++  L LEL   NI   I+ P

		Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187

		

		Query: 177 GPIET 181

		           G  ET

		Sbjct: 188 GSTET 192

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 52.9 bits (127), Expect = 5e-10

		 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 18/144 (12%)

		

		Query: 5   MKILLTGGTGFIGSELLKTL--------------SSHQILLLTRNIEAAKNNLSFADLGN 50

		           MK L+TG  GFIG  + K L                + + L    +E            +

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 51  IQYLDDLSSLQDLNDIDAVINLAGEPIADKRWSAAQKKAICDSRWQMTEALVELIHASAK 110

		           +   + ++ L      + V           R+S     A  DS       ++E    +  

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118

		

		Query: 111 PPAVFISGSAVGYYGDQQAHPFDE 134

		              ++ S S+V  YG  +  PF  

		Sbjct: 119 QHLLYASSSSV--YGLNRKMPFST 140

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 92.2 bits (229), Expect = 1e-23

		 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

		

		Query: 5   TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64

		             ILV DDD+ IR +L++ LSR GY V   ++   L  ++A  G  +LV+ D+++P E+ 

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENA 62

		

		Query: 65  FSLCQFMR-RESTVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRRV 123

		           F L   ++     +P+++++A +     I   E GA DY+ KPF+   L+  I   L   

		Sbjct: 63  FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122

		

		Query: 124 HVTQEKPSD 132

		                K  D

		Sbjct: 123 KRRPSKLED 131

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 33.7 bits (77), Expect = 0.001

		 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 25/101 (24%)

		

		Query: 385 LIDNAVKYG-----EQAVVTL--EHSEEWIYITIDDQGPGIAEAQLEAVFEPYFRLAKDS 437

		           L++N +K+G     +   + L        + + +++ G    +                 

		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK--------------NTK 308

		

		Query: 438 EGHGLGLGICRN---ILHGHGGDLIISNLPQGGLRAQVLIP 475

		           E  G GL   R    +L+G    + +S   QG + A VLIP

		Sbjct: 309 ESTGTGLQNVRERLQMLYGTEAQIKLSE-KQGKVNAMVLIP 348

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 35.4 bits (81), Expect = 4e-04

		 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 19/81 (23%)

		

		Query: 34  LILVGPSGCGKSTLMNTIAGLENISSGEIVIDGVDVAQVEPKDRDIAMVFQSYALYPNMT 93

		           ++L G  G GKSTL+NT+ GL+  S     I            +D               

		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVA----- 644

		

		Query: 94  VRGNIEFGLKIRKMAQSEIDA 114

		                E   ++    +++ +A

		Sbjct: 645 ----YELS-EMTAFRRADAEA 660

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  455 bits (1173), Expect = e-160

		 Identities = 168/479 (35%), Positives = 241/479 (50%), Gaps = 56/479 (11%)

		

		Query: 7   IDDESDLRLAVEQSFELAEIEANFFADAESALLAMKAQTQPAVVITDICLPGISGMDLLN 66

		            DD++ +R  + Q+   A  +    ++A +    + A     +V+TD+ +P  +  DLL 

		Sbjct: 9   ADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAFDLLP 67

		

		Query: 67  TLIHRDPDLPVIMITGHGDISMAVKALHSGAYDFIEKPFSPEHLVETVKRAIEKRQLTNE 126

		            +    PDLPV++++       A+KA   GAYD++ KPF    L+  + RA+ + +    

		Sbjct: 68  RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR--- 124

		

		Query: 127 NQLLRQSLKASKTLGPRIIGETPSIQELRATISHIADTQADILLFGETGTGKELIARSIH 186

		                  L+     G  ++G + ++QE+   ++ +  T   +++ GE+GTGKEL+AR++H

		Sbjct: 125 ---RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181

		

		Query: 187 EQSPRREKNFVALNCGAIPENLIESELYGHEKGAFTGADSQRIGKFEFAQGGTLFLDEIE 246

		           +   RR   FVA+N  AIP +LIESEL+GHEKGAFTGA ++  G+FE A+GGTLFLDEI 

		Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241

		

		Query: 247 SMPMQAQIRLLRVLQERVIERVGSNQLLPLDVRIIAATKVDLKQAAANGEFRQDLYYRLN 306

		            MPM AQ RLLRVLQ+     VG    +  DVRI+AAT  DLKQ+   G FR+DLYYRLN

		Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301

		

		Query: 307 VVTLNLPPLRKRKEDIAALFHHFLLVAAARYAKTVPALSASDLQQLLAHNWPGNVRELRN 366

		           VV L LPPLR R EDI  L  HF+   A +    V       L+ + AH WPGNVREL N

		Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360

		

		Query: 367 AAERYILL---------------------------------------------GKLAQLG 381

		              R   L                                                A  G

		Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420

		

		Query: 382 ETPASTTVHYALSDQVAEFEKSVIEQTLMECGGSIKETMDKLQVARKTLYDKMQRYGLD 440

		           +    + +       +AE E  +I   L    G+  +  D L + R TL  K++  G+ 

		Sbjct: 421 DALPPSGL---YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 34.0 bits (78), Expect = 0.002

		 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 20/161 (12%)

		

		Query: 323 HRQQKHRQIERVQQEAKQKLEFLVMERTAELQAEIAQRTKTEQALRLTQDELIQAAKLAV 382

		                  Q    Q +  QK E  + ++ AE    +A+  + E   R+ +  L   + L  

		Sbjct: 187 LTSLIKEQFSTWQNQKYQK-ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245

		

		Query: 383 IGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSRISALTERMAKISQQLR 442

		              ++       +  L     + +             +    S++  +   +    ++ +

		Sbjct: 246 KQAIAK------HAVLEQENKYVEAVN---------ELRVYKSQLEQIESEILSAKEEYQ 290

		

		Query: 443 SFA---RKSAGDELVEARLMPVLLSANELMKPSLKSARVQL 480

		                 +    D+L +      LL+  EL K   +     +

		Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLT-LELAKNEERQQASVI 330

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 93.2 bits (231), Expect = 7e-25

		 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 4/208 (1%)

		

		Query: 8   ISTDALKDKVILVTGAGAGIGRQAALSYAKHGATVILLGRNVKNLESVYDEIEASGYPQA 67

		           ++   ++ K+  +TGA  GIG   A + A  GA +  +  N + LE V   ++A      

		Sbjct: 1   MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60

		

		Query: 68  AIIPLDLKGATKQNYIDMSETIEGQFGRLDGLLHNAGVLGTLSPFDQISEEDFDDILQIN 127

		           A  P D++ +   +  +++  IE + G +D L++ AGVL        +S+E+++    +N

		Sbjct: 61  AF-PADVRDSAAID--EITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVN 116

		

		Query: 128 VKSEFLMTQALLPLLRKAQAGRIIFTSSTVGHSGRAFWGTYAISKFAVEGMMQILADEFS 187

		               F  ++++   +   ++G I+   S      R     YA SK A     + L  E +

		Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176

		

		Query: 188 NSPIRVNAINPGATRTRMREKAYPGEDA 215

		              IR N ++PG+T T M+   +  E+ 

		Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENG 204

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score =  120 bits (302), Expect = 2e-39

		 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

		

		Query: 2  TKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRVG 61

		           K +LI ++ AE T L+ K+   AV  +   ++S L  G+++++ GFG+F +  R  R G

		Sbjct: 3  NKQDLIAKV-AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61

		

		Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRERV 90

		          RNP+TG++++++   VP FK GK L++ V

		Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score =  126 bits (318), Expect = 7e-32

		 Identities = 101/727 (13%), Positives = 216/727 (29%), Gaps = 85/727 (11%)

		

		Query: 90  GVNFHLNLESLTIDLTLPQEALSERTLNASQQYPPFQASASGSVSWLNSFNFAYNRHWQN 149

		                L++    ++LT+PQ  +S R        PP       +   LN +NF+ N     

		Sbjct: 144 DATAQLDVGQQRLNLTIPQAFMSNRARGYI---PPELWDPGINAGLLN-YNFSGNSVQNR 199

		

		Query: 150 ESESW-YSSIDWLSQMNVGGVSGINLQLANHLQMNEESHDYVRGEWLAFY---DDPDLPL 205

		              +  Y+ ++  S +N+G     +    ++   +  S    + + +  +   D   L  

		Sbjct: 200 IGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRS 259

		

		Query: 206 RASVGDVFSGESGHLYGLALGGFTVESRYADLQPERSISPQSSQQLLLQESAEVEVYVNG 265

		           R ++GD ++       G+   G  + S    + P+           + + +A+V +  NG

		Sbjct: 260 RLTLGDGYTQ-GDIFDGINFRGAQLASDDN-MLPDSQRGFAPVIHGIARGTAQVTIKQNG 317

		

		Query: 266 ERVSSGRLEAGRYNLQNLILDNGANEITVVVNYLSGRQEVLTFTQFYNARLLQQGLLDYA 325

		             + +  +  G + + ++     + ++ V +    G  ++ T        L ++G   Y+

		Sbjct: 318 YDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYS 377

		

		Query: 326 FSVGRPIVYQEQGIEYEDAWLATGYFEYGVADWLTLGSNALWAKEGGVIGMLATVSSG-L 384

		            + G    Y+    + E          +G+    T+      A            + G L

		Sbjct: 378 ITAGE---YRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGAL 434

		

		Query: 385 GNITSRFSWSH------NQEQGWIASLDYENSVIGNGESQSPNLRLAYEYSEQ------- 431

		           G ++   + ++      +Q  G      Y  S+  +G +      + Y YS         

		Sbjct: 435 GALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQ---LVGYRYSTSGYFNFAD 491

		

		Query: 432 --------------------FQSKPWRVGEEGNQYSQILGSYFWQISDAVDLTLSG-RYT 470

		                                           N+  ++  +   Q+     L LSG   T

		Sbjct: 492 TTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQT 551

		

		Query: 471 LFDEKEDEVQTSVLLNWRHKGLTVGLGSEYEESARYVEGDNRLLFTF------------- 517

		            +     + Q    LN   + +   L     ++A     D  L                 

		Sbjct: 552 YWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSK 611

		

		Query: 518 ---EYNWYSEQESHRIGASYNSLTERSRLYFNNEGLNYVDDIGVRIEAEQDQSIKSQKAM 574

		               +   S   SH +     +L         +  L+Y    G         S  +  A 

		Sbjct: 612 SQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTG-YAGGGDGNSGSTGYAT 670

		

		Query: 575 LSYTANRFRVESELVRKQNRLDDQAQYQGSVRLATSLGMVDGEWGWGRALSGPFMVASMH 634

		           L+Y                        Q    ++  +         G+ L+   +     

		Sbjct: 671 LNYRGGYGNANIGYSH------SDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVV----- 719

		

		Query: 635 PTLTEATAYLDVDSEGRATALATPSINGLISISQPYGINIIEYNVHNAPLGYDWGSGKVD 694

		             L +A    D   E +           ++  +  Y  N +  + +      D  +   +

		Sbjct: 720 --LVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVAN 777

		

		Query: 695 VSPGAATGHRLIMGSDASYTVTGFLTTT-EGEAIAYRQASLIVDDKRMAFFTNQQGRFYI 753

		           V P      R      A   +   +T T   + + +  A +  +  + +      G+ Y+

		Sbjct: 778 VVPTRGAIVRAEF--KARVGIKLLMTLTHNNKPLPF-GAMVTSESSQSSGIVADNGQVYL 834

		

		Query: 754 QGIAPGE 760

		            G+    

		Sbjct: 835 SGMPLAG 841

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 67.2 bits (164), Expect = 7e-14

		 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

		

		Query: 453 VLVVEDTHSNQMVIQLLLNKLGHNVFIANNGSEAIEFIESNTESLDVVFMDVSMPVMDGL 512

		           +LV +D  + + V+   L++ G++V I +N +    +I +     D+V  DV MP  +  

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENAF 63

		

		Query: 513 TATKILRTKGFEVPIIALTAHALASDKQNCLDVGMDSFVAKPVRKQELANAIE 565

		                ++    ++P++ ++A           + G   ++ KP    EL   I 

		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116

		

		

		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

		          Length = 800

		

		 Score = 28.2 bits (62), Expect = 0.015

		 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 24/97 (24%)

		

		Query: 42  EDYYKKGKGINIDI-SKLNV--AKELGLNATVSSD-------------------NNVIVI 79

		           E YY+ GKGI++DI SK      + L L  ++S D                   N  I I

		Sbjct: 168 EVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDI 227

		

		Query: 80  EFSKGDLPHFP-ALTATFTHRTLPD-RDFTQLLTADA 114

		            F K +L  F  A +  F++   PD R   +L   D 

		Sbjct: 228 NFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDM 264