| S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
| 1 | RPD_0004 | RPD_0039 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0004 | 2 | 14 | -1.710211 | DNA gyrase subunit B | |
| RPD_0005 | 5 | 24 | -2.941249 | hypothetical protein | |
| RPD_0006 | 3 | 27 | -4.094305 | hypothetical protein | |
| RPD_0007 | 5 | 23 | -4.522396 | hypothetical protein | |
| RPD_0008 | 5 | 29 | -6.509134 | hypothetical protein | |
| RPD_0009 | 5 | 28 | -6.426253 | hypothetical protein | |
| RPD_0010 | 6 | 23 | -5.989575 | hypothetical protein | |
| RPD_0011 | 6 | 24 | -6.345973 | hypothetical protein | |
| RPD_0012 | 6 | 22 | -5.688365 | helicase-like protein | |
| RPD_0013 | 5 | 20 | -5.381746 | DNA methylase containing a Zn-ribbon | |
| RPD_0014 | 6 | 16 | -2.055259 | hypothetical protein | |
| RPD_0015 | 4 | 17 | -1.120762 | hypothetical protein | |
| RPD_0016 | 1 | 19 | 0.413201 | hypothetical protein | |
| RPD_0017 | 1 | 20 | 0.052096 | hypothetical protein | |
| RPD_0018 | 0 | 20 | -0.146114 | metallophosphoesterase | |
| RPD_0019 | 2 | 25 | -1.338583 | hypothetical protein | |
| RPD_0020 | 1 | 24 | -2.524147 | AAA ATPase, central region | |
| RPD_0021 | 2 | 28 | -5.033566 | hypothetical protein | |
| RPD_0022 | 3 | 29 | -3.665658 | hypothetical protein | |
| RPD_0023 | 3 | 28 | -3.599672 | hypothetical protein | |
| RPD_0024 | 3 | 29 | -3.855667 | hypothetical protein | |
| RPD_0025 | 3 | 28 | -3.492290 | integrase catalytic subunit | |
| RPD_0026 | 4 | 30 | -3.244332 | hypothetical protein | |
| RPD_0027 | 4 | 27 | -1.847522 | hypothetical protein | |
| RPD_0028 | 4 | 26 | -2.782563 | hypothetical protein | |
| RPD_0029 | 5 | 24 | -2.194882 | hypothetical protein | |
| RPD_0030 | 4 | 22 | -1.038483 | hypothetical protein | |
| RPD_0031 | 3 | 19 | 2.028861 | hypothetical protein | |
| RPD_0032 | 4 | 19 | 2.622554 | hypothetical protein | |
| RPD_0033 | 4 | 19 | 0.343746 | hypothetical protein | |
| RPD_0034 | 4 | 19 | 0.080482 | hypothetical protein | |
| RPD_0035 | 3 | 18 | -0.013770 | UBA/THIF-type NAD/FAD binding domain-containing | |
| RPD_0036 | 2 | 16 | -0.352260 | hypothetical protein | |
| RPD_0037 | 1 | 16 | -2.349418 | UvrD/REP helicase | |
| RPD_0038 | 1 | 25 | -5.130022 | hypothetical protein | |
| RPD_0039 | 0 | 19 | -3.002272 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0005 | RTXTOXIND | 30 | 0.009 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 2 | RPD_0057 | RPD_0062 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0057 | 1 | 29 | -3.634784 | hypothetical protein | |
| RPD_0058 | 1 | 29 | -3.868367 | tellurite resistance protein-like | |
| RPD_0059 | 1 | 31 | -4.950010 | hypothetical protein | |
| RPD_0060 | 2 | 24 | -4.262808 | regulatory protein ArsR | |
| RPD_0061 | 2 | 23 | -4.293496 | undecaprenyl pyrophosphate synthase | |
| RPD_0062 | 2 | 18 | -3.480192 | magnesium-protoporphyrin IX monomethyl ester |
| 3 | RPD_0464 | RPD_0481 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0464 | 0 | 11 | 3.027226 | acyltransferase 3 | |
| RPD_0465 | 0 | 12 | 3.277496 | alginate o-acetyltransferase AlgJ | |
| RPD_0466 | 1 | 11 | 4.231751 | membrane bound O-acyl transferase, MBOAT | |
| RPD_0467 | 1 | 12 | 4.700852 | *HemY-like | |
| RPD_0468 | 1 | 12 | 4.082471 | hypothetical protein | |
| RPD_0469 | -2 | 12 | 2.259665 | uroporphyrinogen III synthase HEM4 | |
| RPD_0470 | -2 | 12 | 2.070274 | putative DNA-binding/iron metalloprotein/AP | |
| RPD_0471 | 0 | 12 | 4.016888 | NAD(P)H-dependent glycerol-3-phosphate | |
| RPD_0472 | 0 | 13 | 3.249708 | hypothetical protein | |
| RPD_0473 | 0 | 11 | 2.984377 | hypothetical protein | |
| RPD_0474 | 0 | 14 | 2.623657 | acetyl-CoA synthetase | |
| RPD_0475 | 0 | 14 | 3.059141 | hypothetical protein | |
| RPD_0476 | 0 | 15 | 2.817127 | OmpA/MotB | |
| RPD_0477 | 1 | 14 | -0.541963 | pyridoxamine 5'-phosphate oxidase-like | |
| RPD_0478 | 2 | 16 | 0.144120 | succinate dehydrogenase iron-sulfur subunit | |
| RPD_0479 | 3 | 16 | 0.686313 | succinate dehydrogenase flavoprotein subunit | |
| RPD_0480 | 3 | 14 | 0.117033 | succinate dehydrogenase, cytochrome b subunit | |
| RPD_0481 | 2 | 12 | -0.131818 | succinate dehydrogenase, cytochrome b subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0476 | OMPADOMAIN | 58 | 5e-11 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| 4 | RPD_0569 | RPD_0602 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0569 | 2 | 12 | 1.829699 | Iojap-like protein | |
| RPD_0570 | 1 | 13 | 2.309568 | nicotinic acid mononucleotide | |
| RPD_0571 | 1 | 14 | 1.708708 | gamma-glutamyl phosphate reductase | |
| RPD_0572 | 1 | 14 | 0.428395 | hypothetical protein | |
| RPD_0573 | 0 | 14 | 0.770389 | plasmid stabilization system protein | |
| RPD_0574 | -1 | 14 | 0.943577 | gamma-glutamyl kinase | |
| RPD_0575 | -2 | 21 | -0.742149 | Acyl-CoA dehydrogenase | |
| RPD_0576 | 0 | 23 | -2.307704 | LmbE-like protein | |
| RPD_0577 | 1 | 23 | -3.091432 | type 12 methyltransferase | |
| RPD_0578 | 0 | 24 | -3.609389 | glycosyl transferase family protein | |
| RPD_0579 | 0 | 17 | -3.764150 | exodeoxyribonuclease III (xth) | |
| RPD_0580 | 0 | 16 | -3.545861 | MaoC-like dehydratase | |
| RPD_0581 | 0 | 12 | -3.283277 | AMP-dependent synthetase and ligase | |
| RPD_0582 | 0 | 9 | -1.746515 | ABC-type branched-chain amino acid transport | |
| RPD_0583 | 0 | 10 | -0.606926 | regulatory protein TetR | |
| RPD_0584 | 0 | 10 | 0.712346 | GTPase ObgE | |
| RPD_0585 | 2 | 11 | -0.214847 | hypothetical protein | |
| RPD_0586 | 3 | 16 | -2.517545 | hypothetical protein | |
| RPD_0587 | 2 | 13 | -1.733328 | GCN5-like N-acetyltransferase | |
| RPD_0588 | 1 | 13 | -1.592306 | 50S ribosomal protein L27 | |
| RPD_0589 | 1 | 10 | -1.336927 | 50S ribosomal protein L21 | |
| RPD_0590 | 0 | 10 | -1.277375 | hypothetical protein | |
| RPD_0591 | -2 | 10 | -1.567057 | *DNA helicase | |
| RPD_0592 | 2 | 12 | -0.287263 | aspartate/glutamate/uridylate kinase | |
| RPD_0593 | 2 | 12 | -1.162327 | aspartate/glutamate/uridylate kinase | |
| RPD_0594 | 2 | 11 | -1.077078 | general substrate transporter | |
| RPD_0595 | 3 | 10 | -1.146648 | ubiquinol oxidase subunit II | |
| RPD_0596 | 3 | 11 | -1.443256 | cytochrome-c oxidase | |
| RPD_0597 | 1 | 7 | 0.615697 | cytochrome c oxidase subunit III | |
| RPD_0598 | 1 | 7 | 1.090379 | cytochrome C oxidase subunit IV | |
| RPD_0599 | 1 | 7 | 0.879138 | Surfeit locus 1 | |
| RPD_0600 | 1 | 8 | 0.670621 | ATPase-like ATP-binding protein | |
| RPD_0601 | 2 | 9 | 1.227185 | response regulator receiver | |
| RPD_0602 | 2 | 9 | 1.048333 | carbamoyl-phosphate synthase L chain, |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0570 | LPSBIOSNTHSS | 28 | 0.014 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0574 | CARBMTKINASE | 40 | 1e-05 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0583 | HTHTETR | 56 | 7e-12 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0592 | FbpA_PF05833 | 29 | 0.016 | Fibronectin-binding protein | |
>FbpA_PF05833#Fibronectin-binding protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0595 | AEROLYSIN | 31 | 0.009 | Aerolysin signature. | |
>AEROLYSIN#Aerolysin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0601 | HTHFIS | 101 | 2e-27 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0602 | RTXTOXIND | 36 | 0.001 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 5 | RPD_0626 | RPD_0652 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0626 | 2 | 12 | 1.181277 | LysR, substrate-binding | |
| RPD_0627 | 2 | 13 | 1.497787 | S-adenosylmethionine:diacylglycerol | |
| RPD_0628 | 1 | 15 | 1.878673 | type 11 methyltransferase | |
| RPD_0629 | 1 | 13 | 2.270651 | high-affinity nickel-transporter | |
| RPD_0630 | 1 | 15 | 2.470831 | transport system permease | |
| RPD_0631 | 3 | 12 | 3.657303 | ABC transporter-like protein | |
| RPD_0632 | 3 | 12 | 3.779712 | periplasmic binding protein | |
| RPD_0633 | 3 | 13 | 4.110372 | cobalamin biosynthesis protein CobD | |
| RPD_0634 | 3 | 15 | 4.459791 | cobyric acid synthase | |
| RPD_0635 | 4 | 14 | 4.774584 | cob(I)yrinic acid a,c-diamide | |
| RPD_0636 | 4 | 14 | 5.238027 | cobaltochelatase subunit CobN | |
| RPD_0637 | 3 | 14 | 4.757673 | cobalamin (vitamin B12) biosynthesis CobW | |
| RPD_0638 | 1 | 13 | 4.650335 | cobalbumin biosynthesis enzyme | |
| RPD_0639 | 3 | 14 | 4.406915 | hypothetical protein | |
| RPD_0640 | 2 | 13 | 3.081961 | nicotinate-nucleotide-dimethylbenzimidazole | |
| RPD_0641 | 3 | 16 | 2.509889 | Cob(II)yrinic acid a,c-diamide reductase | |
| RPD_0642 | 6 | 19 | 1.368455 | hypothetical protein | |
| RPD_0643 | 4 | 15 | 3.198117 | hypothetical protein | |
| RPD_0644 | 4 | 16 | 2.410034 | hypothetical protein | |
| RPD_0645 | 3 | 14 | 2.954410 | CutA1 divalent ion tolerance protein | |
| RPD_0646 | 1 | 14 | 2.913992 | hypothetical protein | |
| RPD_0647 | 0 | 12 | 3.877894 | hypothetical protein | |
| RPD_0648 | -1 | 11 | 4.269834 | hypothetical protein | |
| RPD_0649 | -1 | 12 | 3.355929 | hypothetical protein | |
| RPD_0650 | -1 | 12 | 3.436288 | hypothetical protein | |
| RPD_0651 | -1 | 12 | 3.140738 | phosphoglycerate mutase | |
| RPD_0652 | -1 | 11 | 3.306098 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0630 | ACRIFLAVINRP | 29 | 0.022 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0631 | PF05272 | 31 | 0.006 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0650 | PREPILNPTASE | 29 | 0.018 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| 6 | RPD_0729 | RPD_0758 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0729 | 2 | 15 | -1.142567 | 2-dehydropantoate 2-reductase | |
| RPD_0730 | 3 | 15 | -1.757340 | cbb3-type cytochrome c oxidase subunit I | |
| RPD_0731 | 1 | 11 | -0.045893 | cbb3-type cytochrome c oxidase subunit II | |
| RPD_0732 | 0 | 9 | 0.485779 | Cbb3-type cytochrome oxidase component | |
| RPD_0733 | 0 | 9 | 0.824443 | cytochrome c oxidase, cbb3-type subunit III | |
| RPD_0734 | 0 | 9 | 0.910383 | 4Fe-4S ferredoxin | |
| RPD_0735 | 1 | 9 | 1.215367 | FixH | |
| RPD_0736 | 0 | 8 | 0.346981 | copper-translocating P-type ATPase | |
| RPD_0737 | 2 | 14 | -1.786029 | cytochrome oxidase maturation protein, | |
| RPD_0738 | 0 | 10 | -0.932924 | hypothetical protein | |
| RPD_0739 | -1 | 9 | -0.830656 | hypothetical protein | |
| RPD_0740 | 0 | 18 | -3.710453 | regulatory protein AsnC/Lrp | |
| RPD_0741 | 3 | 25 | -4.737356 | circadian clock protein KaiC | |
| RPD_0742 | 5 | 34 | -6.234828 | KaiB | |
| RPD_0743 | 5 | 34 | -6.823936 | HWE histidine kinase | |
| RPD_0744 | 7 | 41 | -9.358841 | integrase catalytic subunit | |
| RPD_0745 | 10 | 51 | -11.363528 | sugar transferase | |
| RPD_0746 | 8 | 47 | -10.645214 | group 1 glycosyl transferase | |
| RPD_0747 | 8 | 44 | -10.446331 | dTDP-4-dehydrorhamnose reductase | |
| RPD_0748 | 8 | 44 | -10.065783 | polysaccharide biosynthesis protein CapD | |
| RPD_0749 | 11 | 52 | -10.514131 | UDP-N-acetylglucosamine 2-epimerase | |
| RPD_0750 | 11 | 54 | -9.837676 | polysaccharide biosynthesis protein | |
| RPD_0751 | 9 | 52 | -9.375437 | hypothetical protein | |
| RPD_0752 | 9 | 54 | -9.780692 | type 11 methyltransferase | |
| RPD_0753 | 10 | 55 | -10.083061 | glycosyl transferase family protein | |
| RPD_0754 | 10 | 57 | -9.848919 | hypothetical protein | |
| RPD_0755 | 7 | 48 | -8.105883 | group 1 glycosyl transferase | |
| RPD_0756 | 7 | 44 | -7.508694 | type 11 methyltransferase | |
| RPD_0757 | 6 | 42 | -6.554977 | glycosyl transferase family protein | |
| RPD_0758 | 3 | 26 | -2.469289 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0729 | NUCEPIMERASE | 30 | 0.009 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0734 | PYOCINKILLER | 31 | 0.010 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0739 | PF03944 | 26 | 0.011 | delta endotoxin | |
>PF03944#delta endotoxin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0743 | PF06580 | 38 | 6e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0745 | NUCEPIMERASE | 37 | 1e-04 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0747 | NUCEPIMERASE | 37 | 5e-05 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0748 | NUCEPIMERASE | 60 | 2e-12 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 7 | RPD_0812 | RPD_0827 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0812 | 2 | 16 | -0.411137 | peptidase U62, modulator of DNA gyrase | |
| RPD_0813 | 1 | 17 | -1.432572 | invasion associated locus B | |
| RPD_0814 | 3 | 17 | -1.952806 | cytochrome-c oxidase | |
| RPD_0815 | 3 | 19 | -1.232642 | cytochrome-c oxidase | |
| RPD_0816 | 3 | 16 | 0.871076 | protoheme IX farnesyltransferase | |
| RPD_0817 | 3 | 15 | 1.173939 | putative CoxF | |
| RPD_0818 | 2 | 14 | 1.267902 | cytochrome C oxidase assembly protein | |
| RPD_0819 | 1 | 13 | 1.566855 | cytochrome c oxidase subunit III | |
| RPD_0820 | 0 | 12 | 2.120615 | hypothetical protein | |
| RPD_0821 | -1 | 11 | 1.686750 | putative surfeit 1 | |
| RPD_0822 | -1 | 11 | 1.157098 | threonine synthase | |
| RPD_0823 | 0 | 11 | 0.938521 | peptidase M16-like | |
| RPD_0824 | 2 | 13 | 0.637890 | GCN5-like N-acetyltransferase | |
| RPD_0825 | 1 | 13 | -1.056408 | hypothetical protein | |
| RPD_0826 | 4 | 16 | -1.601072 | transposase, IS4 | |
| RPD_0827 | 3 | 14 | -1.559186 | H+-transporting two-sector ATPase, B/B' subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0813 | PF06776 | 280 | 4e-99 | Invasion associated locus B | |
>PF06776#Invasion associated locus B | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0824 | FLGLRINGFLGH | 28 | 0.020 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| 8 | RPD_1115 | RPD_1146 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1115 | 2 | 11 | 0.821971 | UDP-glucose 4-epimerase | |
| RPD_1116 | 2 | 11 | 1.441362 | hypothetical protein | |
| RPD_1117 | 1 | 11 | 2.006033 | hypothetical protein | |
| RPD_1118 | 1 | 10 | 2.264028 | basic membrane lipoprotein | |
| RPD_1119 | 1 | 10 | 2.698217 | inner-membrane translocator | |
| RPD_1120 | 0 | 9 | 0.916099 | inner-membrane translocator | |
| RPD_1121 | 0 | 9 | 0.876840 | ABC transporter-like protein | |
| RPD_1122 | 1 | 12 | 0.706865 | hypothetical protein | |
| RPD_1123 | 2 | 13 | 1.399265 | hypothetical protein | |
| RPD_1124 | 1 | 13 | 1.403771 | hypothetical protein | |
| RPD_1125 | 2 | 14 | 1.754388 | hypothetical protein | |
| RPD_1126 | 2 | 15 | 3.038793 | enoyl-(acyl carrier protein) reductase | |
| RPD_1127 | 2 | 14 | 3.455804 | bifunctional enoyl-CoA hydratase/phosphate | |
| RPD_1128 | 1 | 13 | 2.666503 | acetate kinase | |
| RPD_1129 | 1 | 12 | 2.773642 | phenylacetic acid degradation-like protein | |
| RPD_1130 | -1 | 11 | 2.703034 | hypothetical protein | |
| RPD_1131 | -2 | 11 | 1.804225 | nuclease | |
| RPD_1132 | -1 | 12 | 1.430981 | enoyl-CoA hydratase/isomerase | |
| RPD_1133 | 0 | 13 | 1.118944 | AMP-dependent synthetase and ligase | |
| RPD_1134 | 2 | 12 | 0.800525 | regulatory protein IclR | |
| RPD_1135 | 3 | 12 | 0.081398 | MaoC-like dehydratase | |
| RPD_1136 | 3 | 12 | -0.628681 | twin-arginine translocation pathway signal | |
| RPD_1137 | 2 | 14 | -0.649502 | ABC transporter-like protein | |
| RPD_1138 | 1 | 15 | -0.763493 | ABC transporter-like protein | |
| RPD_1139 | 0 | 14 | -0.840942 | inner-membrane translocator | |
| RPD_1140 | -1 | 13 | 0.090970 | inner-membrane translocator | |
| RPD_1141 | -2 | 13 | -0.114455 | group 1 glycosyl transferase | |
| RPD_1142 | -1 | 12 | 0.621508 | ABC transporter-like protein | |
| RPD_1143 | 0 | 10 | 1.645795 | Amylo-alpha-1,6-glucosidase | |
| RPD_1144 | 1 | 12 | 3.322105 | hypothetical protein | |
| RPD_1145 | 2 | 12 | 3.154081 | major facilitator transporter | |
| RPD_1146 | 2 | 12 | 2.491297 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1115 | NUCEPIMERASE | 136 | 7e-40 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1117 | V8PROTEASE | 30 | 0.014 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1126 | DHBDHDRGNASE | 61 | 4e-13 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1128 | ACETATEKNASE | 371 | e-129 | Acetate kinase family signature. | |
>ACETATEKNASE#Acetate kinase family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1132 | SHAPEPROTEIN | 29 | 0.021 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1145 | TCRTETA | 46 | 1e-07 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 9 | RPD_1164 | RPD_1194 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1164 | 5 | 15 | 2.124800 | nickel-dependent hydrogenase b-type cytochrome | |
| RPD_1165 | 6 | 16 | 4.081972 | hydrogenase expression/formation protein | |
| RPD_1166 | 7 | 14 | 5.537874 | HupE/UreJ protein | |
| RPD_1167 | 8 | 11 | 5.143193 | hydrogenase assembly chaperone hypC/hupF | |
| RPD_1168 | 7 | 12 | 4.926790 | hydrogenase-1 expression HyaE | |
| RPD_1169 | 6 | 13 | 3.939562 | HupH hydrogenase expression protein | |
| RPD_1170 | 5 | 14 | 4.693316 | rubredoxin-type Fe(Cys)4 protein | |
| RPD_1171 | 5 | 15 | 4.619651 | putative hydrogenase expression/formation | |
| RPD_1172 | 6 | 14 | 3.932582 | coenzyme F420-reducing hydrogenase subunit | |
| RPD_1173 | 6 | 15 | 3.242467 | hydrogenase nickel insertion protein HypA | |
| RPD_1174 | 4 | 14 | 2.679733 | hydrogenase accessory protein HypB | |
| RPD_1175 | 4 | 15 | 2.921235 | (NiFe) hydrogenase maturation protein HypF | |
| RPD_1176 | 4 | 14 | 1.660636 | hydrogenase assembly chaperone hypC/hupF | |
| RPD_1177 | 3 | 13 | 1.536846 | hydrogenase expression/formation protein HypD | |
| RPD_1178 | 2 | 13 | 1.394096 | hydrogenase expression/formation protein HypE | |
| RPD_1179 | 2 | 15 | 0.983609 | sigma-54 factor, interaction region | |
| RPD_1180 | 1 | 14 | 1.101026 | ATPase-like ATP-binding protein | |
| RPD_1181 | 1 | 14 | 0.432611 | alpha/beta hydrolase fold protein | |
| RPD_1182 | 2 | 12 | 0.784398 | regulatory protein ArsR | |
| RPD_1183 | 2 | 11 | 1.545050 | rhodanese-like protein | |
| RPD_1184 | 2 | 10 | 1.496604 | FAD-dependent pyridine nucleotide-disulfide | |
| RPD_1185 | 2 | 11 | 1.868919 | type 11 methyltransferase | |
| RPD_1186 | 1 | 10 | 2.533142 | nitrogenase-associated protein | |
| RPD_1187 | 1 | 10 | 2.732584 | hypothetical protein | |
| RPD_1188 | 0 | 11 | 3.276975 | modD protein | |
| RPD_1189 | 3 | 11 | 3.692396 | AMP-dependent synthetase and ligase | |
| RPD_1190 | 5 | 13 | 3.985105 | hypothetical protein | |
| RPD_1191 | 4 | 13 | 3.591134 | NUDIX hydrolase | |
| RPD_1192 | 4 | 15 | 2.858392 | hypothetical protein | |
| RPD_1193 | 4 | 16 | 3.189736 | hypothetical protein | |
| RPD_1194 | 4 | 15 | 2.987416 | chromosome segregation protein SMC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1164 | PF03944 | 30 | 0.008 | delta endotoxin | |
>PF03944#delta endotoxin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1174 | TRNSINTIMINR | 29 | 0.039 | Translocated intimin receptor (Tir) signature. | |
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1179 | HTHFIS | 457 | e-160 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1180 | PF06580 | 36 | 3e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1188 | HTHFIS | 34 | 7e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1194 | GPOSANCHOR | 53 | 7e-09 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| 10 | RPD_1268 | RPD_1273 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1268 | 5 | 14 | 3.222581 | extensin-like protein | |
| RPD_1269 | 5 | 15 | 2.197442 | hypothetical protein | |
| RPD_1270 | 4 | 13 | 2.133473 | Mg2+ transporter protein, CorA-like | |
| RPD_1271 | 3 | 13 | 1.578622 | hypothetical protein | |
| RPD_1272 | 3 | 11 | 1.810033 | zinc-binding CMP/dCMP deaminase | |
| RPD_1273 | 2 | 11 | 1.715640 | pseudouridine synthase Rsu |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1268 | PF03544 | 28 | 0.038 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1273 | GPOSANCHOR | 30 | 0.048 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| 11 | RPD_1490 | RPD_1521 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1490 | 0 | 15 | -3.254630 | serine/threonine protein kinase | |
| RPD_1491 | 1 | 16 | -4.346487 | transport-associated protein | |
| RPD_1492 | -1 | 18 | -4.398891 | putative phosphoketolase | |
| RPD_1493 | -1 | 23 | -4.664047 | response regulator receiver | |
| RPD_1494 | -1 | 23 | -4.949791 | protein-glutamate O-methyltransferase | |
| RPD_1495 | -1 | 23 | -3.930600 | hypothetical protein | |
| RPD_1496 | -2 | 21 | -3.214954 | response regulator and cylclic diguanylate | |
| RPD_1497 | -2 | 17 | -2.420952 | multi-sensor hybrid histidine kinase | |
| RPD_1498 | -1 | 10 | -0.533469 | hypothetical protein | |
| RPD_1499 | 1 | 9 | -0.291553 | LuxR family two component transcriptional | |
| RPD_1500 | 2 | 13 | -0.811942 | short-chain dehydrogenase/reductase SDR | |
| RPD_1501 | 1 | 13 | -1.395822 | short-chain dehydrogenase/reductase SDR | |
| RPD_1502 | 1 | 11 | -0.930026 | glucose-methanol-choline oxidoreductase | |
| RPD_1503 | 2 | 12 | -0.916843 | aldehyde dehydrogenase | |
| RPD_1504 | 3 | 13 | -0.641177 | *regulatory protein MerR | |
| RPD_1505 | 2 | 11 | -0.320682 | heavy metal translocating P-type ATPase | |
| RPD_1506 | 3 | 14 | 0.909479 | thioesterase | |
| RPD_1507 | 4 | 14 | 1.439482 | molybdopterin oxidoreductase | |
| RPD_1508 | 5 | 13 | 2.489649 | 4Fe-4S ferredoxin | |
| RPD_1509 | 4 | 12 | 2.538936 | phenylacetyl-CoA:acceptor oxidoreductase | |
| RPD_1510 | 4 | 14 | 1.251277 | pyruvate/2-ketoisovalerate 2-oxoacid:acceptor | |
| RPD_1511 | 3 | 13 | 0.903862 | pyruvate/2-ketoisovalerate 2-oxoacid:acceptor | |
| RPD_1512 | 2 | 12 | 0.864734 | pyruvate flavodoxin/ferredoxin | |
| RPD_1513 | 1 | 12 | 0.215596 | FAD-dependent pyridine nucleotide-disulfide | |
| RPD_1514 | 0 | 11 | -0.379627 | thiamine pyrophosphate enzyme-like protein | |
| RPD_1515 | -1 | 12 | -1.032133 | phenylacetate-CoA ligase | |
| RPD_1516 | -1 | 11 | -1.191717 | inner-membrane translocator | |
| RPD_1517 | 0 | 12 | -1.034854 | inner-membrane translocator | |
| RPD_1518 | 1 | 10 | 0.110105 | ABC transporter-like protein | |
| RPD_1519 | 2 | 13 | 1.383342 | ABC transporter-like protein | |
| RPD_1520 | 2 | 12 | 1.492924 | extracellular ligand-binding receptor | |
| RPD_1521 | 2 | 11 | 1.423203 | phenylacetic acid degradation operon negative |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1490 | YERSSTKINASE | 42 | 3e-06 | Yersinia serine/threonine protein kinase signature. | |
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1493 | HTHFIS | 63 | 2e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1496 | HTHFIS | 56 | 1e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1497 | HTHFIS | 76 | 3e-16 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1499 | HTHFIS | 113 | 1e-31 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1500 | DHBDHDRGNASE | 82 | 2e-20 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1501 | DHBDHDRGNASE | 123 | 3e-36 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 12 | RPD_1594 | RPD_1602 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1594 | 2 | 17 | -4.215168 | hypothetical protein | |
| RPD_1595 | 3 | 23 | -5.953567 | hypothetical protein | |
| RPD_1596 | 4 | 30 | -7.250617 | S-adenosylmethionine synthetase | |
| RPD_1597 | 5 | 35 | -8.279322 | S-adenosyl-L-homocysteine hydrolase | |
| RPD_1598 | 7 | 50 | -9.852163 | hypothetical protein | |
| RPD_1599 | 7 | 43 | -8.295444 | ExsB | |
| RPD_1600 | 6 | 36 | -6.123862 | PfkB family carbohydrate kinase | |
| RPD_1601 | 4 | 24 | -1.509876 | hypothetical protein | |
| RPD_1602 | 2 | 14 | 0.303116 | PilT protein-like protein |
| 13 | RPD_1655 | RPD_1670 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1655 | 0 | 17 | 3.153945 | hypothetical protein | |
| RPD_1656 | 1 | 18 | 1.155668 | hypothetical protein | |
| RPD_1657 | 0 | 16 | 3.564142 | hypothetical protein | |
| RPD_1658 | 0 | 18 | 4.581002 | hypothetical protein | |
| RPD_1659 | 1 | 17 | 3.576359 | hypothetical protein | |
| RPD_1660 | 0 | 15 | 3.179948 | hypothetical protein | |
| RPD_1661 | -2 | 14 | 2.880240 | putative phosphohistidine phosphatase SixA | |
| RPD_1662 | -2 | 14 | 2.413830 | FAD dependent oxidoreductase | |
| RPD_1663 | 0 | 12 | 1.277637 | methionine sulfoxide reductase B | |
| RPD_1664 | -1 | 10 | 1.074614 | hypothetical protein | |
| RPD_1665 | 1 | 12 | 0.585280 | hypothetical protein | |
| RPD_1666 | 1 | 12 | 0.191844 | ATPase-like ATP-binding protein | |
| RPD_1667 | 3 | 12 | -1.222520 | hypothetical protein | |
| RPD_1668 | 4 | 11 | -1.593761 | flagellar hook-associated protein | |
| RPD_1669 | 4 | 11 | -1.641581 | hypothetical protein | |
| RPD_1670 | 6 | 15 | -2.355792 | flagellin |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1666 | HTHFIS | 99 | 9e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1667 | FLGHOOKAP1 | 40 | 3e-05 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1668 | FLGHOOKAP1 | 96 | 7e-23 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1670 | FLAGELLIN | 46 | 5e-07 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| 14 | RPD_1684 | RPD_1694 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1684 | 2 | 9 | -1.155886 | flagellar basal body rod protein FlgF | |
| RPD_1685 | 3 | 9 | 1.733806 | flagellar basal body-associated protein FliL | |
| RPD_1686 | 1 | 10 | 1.921230 | flagellar motor switch protein FliM | |
| RPD_1687 | 2 | 9 | 3.354713 | hypothetical protein | |
| RPD_1688 | 2 | 9 | 3.138365 | hypothetical protein | |
| RPD_1689 | 1 | 8 | 3.202818 | hypothetical protein | |
| RPD_1690 | 1 | 7 | 3.312621 | hypothetical protein | |
| RPD_1691 | 3 | 14 | 1.920278 | flagellar biosynthesis protein FliP | |
| RPD_1692 | 3 | 12 | 1.702819 | hypothetical protein | |
| RPD_1693 | 0 | 12 | -2.240870 | flagellar basal body rod protein FlgB | |
| RPD_1694 | -2 | 16 | -4.244588 | flagellar basal body rod protein FlgC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1684 | FLGHOOKAP1 | 28 | 0.035 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1686 | FLGMOTORFLIM | 280 | 3e-94 | Flagellar motor switch protein FliM signature. | |
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1688 | IGASERPTASE | 39 | 2e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1690 | PF03544 | 48 | 1e-07 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1691 | FLGBIOSNFLIP | 264 | 1e-91 | Escherichia coli: Flagellar biosynthetic protein Fl... | |
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1692 | IGASERPTASE | 48 | 5e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1694 | FLGHOOKAP1 | 32 | 5e-04 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 15 | RPD_1957 | RPD_1993 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1957 | 2 | 16 | 2.443450 | peptidoglycan binding domain-containing protein | |
| RPD_1958 | 1 | 13 | 2.402460 | hypothetical protein | |
| RPD_1959 | 1 | 11 | 2.877965 | hypothetical protein | |
| RPD_1960 | 2 | 15 | 1.337856 | polysaccharide deacetylase | |
| RPD_1961 | 2 | 15 | 2.535034 | hypothetical protein | |
| RPD_1962 | 2 | 14 | 2.634644 | hypothetical protein | |
| RPD_1963 | 3 | 13 | 2.984530 | hypothetical protein | |
| RPD_1964 | 2 | 16 | 3.463350 | hypothetical protein | |
| RPD_1965 | 2 | 12 | 2.275654 | hypothetical protein | |
| RPD_1966 | 2 | 12 | 1.145262 | hypothetical protein | |
| RPD_1967 | 4 | 21 | -3.190260 | hypothetical protein | |
| RPD_1968 | 5 | 29 | -4.995715 | penicillin-binding protein 1A | |
| RPD_1969 | 5 | 34 | -6.484738 | ATPase | |
| RPD_1970 | 6 | 35 | -6.555538 | hypothetical protein | |
| RPD_1971 | 6 | 38 | -6.216050 | twin-arginine translocation pathway signal | |
| RPD_1972 | 6 | 34 | -5.105831 | hypothetical protein | |
| RPD_1973 | 5 | 27 | -3.358433 | hypothetical protein | |
| RPD_1974 | 3 | 17 | 0.474251 | hypothetical protein | |
| RPD_1975 | 3 | 18 | 5.648854 | major facilitator transporter | |
| RPD_1976 | 6 | 22 | 5.885119 | hypothetical protein | |
| RPD_1977 | 8 | 21 | 5.938335 | hypothetical protein | |
| RPD_1978 | 5 | 21 | 5.790148 | Flp/Fap pilin component | |
| RPD_1979 | 7 | 22 | 6.227785 | hypothetical protein | |
| RPD_1980 | 7 | 25 | 5.160519 | hypothetical protein | |
| RPD_1981 | 6 | 20 | 4.493708 | hypothetical protein | |
| RPD_1982 | 3 | 18 | 4.144182 | hypothetical protein | |
| RPD_1983 | 0 | 16 | -0.050528 | excinuclease ABC subunit C | |
| RPD_1984 | 1 | 23 | -2.453523 | Phage portal protein, HK97 | |
| RPD_1985 | 2 | 24 | -2.871171 | hypothetical protein | |
| RPD_1986 | 1 | 20 | -1.582673 | hypothetical protein | |
| RPD_1987 | 1 | 21 | -1.570991 | hypothetical protein | |
| RPD_1988 | 0 | 12 | 1.657530 | peptidase U35, phage prohead HK97 | |
| RPD_1989 | 1 | 12 | 3.082313 | phage major capsid protein, HK97 | |
| RPD_1990 | 1 | 14 | 4.535623 | hypothetical protein | |
| RPD_1991 | 1 | 14 | 4.378360 | DNA-cytosine methyltransferase | |
| RPD_1992 | 0 | 14 | 4.185674 | ATPase | |
| RPD_1993 | -1 | 14 | 3.759165 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1958 | TCRTETB | 118 | 9e-31 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1970 | PYOCINKILLER | 30 | 0.019 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1974 | ANTHRAXTOXNA | 30 | 0.027 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1979 | V8PROTEASE | 45 | 7e-08 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1989 | HTHTETR | 63 | 3e-14 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 16 | RPD_2111 | RPD_2179 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2111 | 2 | 14 | -1.494978 | putative alpha-isopropylmalate/homocitrate | |
| RPD_2112 | 3 | 14 | -1.658024 | hypothetical protein | |
| RPD_2113 | 3 | 13 | -2.656482 | FAD linked oxidase-like protein | |
| RPD_2114 | 6 | 14 | -1.847865 | cytochrome c, class I | |
| RPD_2115 | 4 | 15 | -2.380107 | hypothetical protein | |
| RPD_2116 | 4 | 23 | -1.995502 | ABC transporter-like protein | |
| RPD_2117 | 4 | 22 | -0.473204 | phosphatidylserine decarboxylase | |
| RPD_2118 | 4 | 23 | -0.501795 | CDP-diacylglycerol--serine | |
| RPD_2119 | 5 | 22 | 0.286101 | hypothetical protein | |
| RPD_2120 | 6 | 23 | -0.248327 | MotA/TolQ/ExbB proton channel | |
| RPD_2121 | 3 | 34 | -5.734210 | OmpA/MotB | |
| RPD_2122 | 4 | 38 | -6.405366 | rhodanese-like protein | |
| RPD_2123 | 5 | 44 | -8.238362 | hypothetical protein | |
| RPD_2124 | 5 | 45 | -8.655668 | extracellular solute-binding protein | |
| RPD_2125 | 5 | 45 | -8.909197 | hypothetical protein | |
| RPD_2126 | 5 | 47 | -9.224629 | radical SAM family protein | |
| RPD_2127 | 5 | 44 | -7.190085 | hypothetical protein | |
| RPD_2128 | 5 | 40 | -6.062566 | lipid A biosynthesis lauroyl acyltransferase | |
| RPD_2129 | 5 | 45 | -7.459457 | zinc-binding alcohol dehydrogenase | |
| RPD_2130 | 5 | 47 | -7.626977 | 3-oxoacyl-(acyl carrier protein) synthase II | |
| RPD_2131 | 4 | 48 | -7.462822 | 3-oxoacyl-(acyl carrier protein) synthase II | |
| RPD_2132 | 1 | 39 | -4.927695 | Beta-hydroxyacyl-(acyl-carrier-protein) | |
| RPD_2133 | 1 | 37 | -4.424622 | acyl carrier protein | |
| RPD_2134 | 2 | 39 | -5.030275 | hypothetical protein | |
| RPD_2135 | 3 | 40 | -5.153944 | MgtC/SapB transporter | |
| RPD_2136 | 3 | 40 | -4.923136 | hypothetical protein | |
| RPD_2137 | 3 | 39 | -4.738699 | hypothetical protein | |
| RPD_2138 | 6 | 44 | -6.803447 | hypothetical protein | |
| RPD_2139 | 4 | 36 | -6.099612 | phosphoserine phosphatase SerB | |
| RPD_2140 | 5 | 35 | -5.958516 | tRNA delta(2)-isopentenylpyrophosphate | |
| RPD_2141 | 4 | 34 | -6.091229 | acetolactate synthase 3 catalytic subunit | |
| RPD_2142 | 4 | 34 | -5.919356 | hypothetical protein | |
| RPD_2143 | 4 | 34 | -5.290364 | acetolactate synthase 3 regulatory subunit | |
| RPD_2144 | 3 | 33 | -4.612673 | putative AtsE | |
| RPD_2145 | 3 | 38 | -3.421680 | ketol-acid reductoisomerase | |
| RPD_2146 | 1 | 36 | -2.734205 | short-chain dehydrogenase/reductase SDR | |
| RPD_2147 | 2 | 38 | -0.178379 | glycine betaine ABC transporter | |
| RPD_2148 | 3 | 32 | 1.916550 | ABC transporter-like protein | |
| RPD_2149 | 6 | 32 | 1.408549 | ABC transporter-like protein | |
| RPD_2150 | 6 | 30 | 1.598754 | binding-protein-dependent transport systems | |
| RPD_2151 | 4 | 27 | 2.274191 | hypothetical protein | |
| RPD_2152 | 3 | 27 | 1.161405 | extracellular solute-binding protein | |
| RPD_2153 | 3 | 27 | 1.529340 | hypothetical protein | |
| RPD_2154 | 3 | 29 | -0.883704 | hypothetical protein | |
| RPD_2155 | 3 | 29 | -0.421507 | hypothetical protein | |
| RPD_2156 | 3 | 29 | -0.582369 | hypothetical protein | |
| RPD_2157 | 3 | 30 | -1.462474 | biotin synthase | |
| RPD_2158 | 2 | 32 | -1.400188 | 2-isopropylmalate synthase | |
| RPD_2159 | 3 | 32 | -2.602261 | TRAP dicarboxylate transporter subunit DctP | |
| RPD_2160 | 3 | 31 | -2.011821 | hypothetical protein | |
| RPD_2161 | 3 | 32 | -2.682716 | tripartite ATP-independent periplasmic | |
| RPD_2162 | 5 | 30 | -2.796306 | TRAP C4-dicarboxylate transport system permease | |
| RPD_2163 | 6 | 29 | -2.493313 | hypothetical protein | |
| RPD_2164 | 5 | 27 | -1.911111 | hypothetical protein | |
| RPD_2165 | 5 | 26 | -1.482732 | hypothetical protein | |
| RPD_2166 | 5 | 30 | -2.501940 | *hypothetical protein | |
| RPD_2167 | 5 | 31 | -2.611948 | hypothetical protein | |
| RPD_2168 | 0 | 38 | -2.061963 | hypothetical protein | |
| RPD_2169 | 0 | 39 | -2.985492 | hypothetical protein | |
| RPD_2170 | 1 | 41 | -3.749399 | hypothetical protein | |
| RPD_2171 | 2 | 43 | -3.856154 | hypothetical protein | |
| RPD_2172 | 3 | 40 | -2.724442 | ATPase | |
| RPD_2173 | 6 | 43 | -4.715535 | hypothetical protein | |
| RPD_2174 | 8 | 45 | -8.245494 | hypothetical protein | |
| RPD_2175 | 8 | 45 | -7.580795 | hypothetical protein | |
| RPD_2176 | 8 | 44 | -7.609820 | ATPase | |
| RPD_2177 | 6 | 34 | -5.495383 | hypothetical protein | |
| RPD_2178 | 5 | 28 | -5.220946 | transposase, mutator type | |
| RPD_2179 | 1 | 19 | -3.553465 | ATPase-like ATP-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2138 | FLGHOOKAP1 | 30 | 0.014 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2143 | RTXTOXIND | 32 | 0.004 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2144 | ACRIFLAVINRP | 755 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2153 | IGASERPTASE | 35 | 1e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2156 | TETREPRESSOR | 28 | 0.005 | Tetracycline repressor protein signature. | |
>TETREPRESSOR#Tetracycline repressor protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2169 | adhesinmafb | 27 | 0.039 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2175 | AUTOINDCRSYN | 104 | 8e-30 | Autoinducer synthesis protein signature. | |
>AUTOINDCRSYN#Autoinducer synthesis protein signature. | |||||
| 17 | RPD_2218 | RPD_2236 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2218 | 2 | 12 | 2.516129 | hypothetical protein | |
| RPD_2219 | 2 | 11 | 1.887795 | ATP dependent DNA ligase | |
| RPD_2220 | 3 | 17 | 0.864971 | hypothetical protein | |
| RPD_2221 | 2 | 18 | -0.322766 | hypothetical protein | |
| RPD_2222 | 2 | 17 | -0.544211 | hypothetical protein | |
| RPD_2223 | 3 | 19 | -1.472189 | hypothetical protein | |
| RPD_2224 | 4 | 19 | -1.976936 | hypothetical protein | |
| RPD_2225 | 3 | 21 | -2.398459 | hypothetical protein | |
| RPD_2226 | 2 | 18 | -3.505829 | hypothetical protein | |
| RPD_2227 | -1 | 14 | -1.599482 | hypothetical protein | |
| RPD_2228 | -1 | 13 | -0.108245 | hypothetical protein | |
| RPD_2229 | 0 | 14 | 0.680530 | hypothetical protein | |
| RPD_2230 | 1 | 11 | 1.289803 | hypothetical protein | |
| RPD_2231 | 1 | 10 | 1.494940 | hypothetical protein | |
| RPD_2232 | 2 | 11 | 2.433546 | regulatory protein LuxR | |
| RPD_2233 | 2 | 11 | 2.544783 | autoinducer synthesis protein | |
| RPD_2234 | 2 | 16 | 0.896241 | hypothetical protein | |
| RPD_2235 | 2 | 15 | 0.342500 | ATPase | |
| RPD_2236 | 2 | 14 | -0.288666 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2221 | cloacin | 26 | 0.019 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2222 | DHBDHDRGNASE | 111 | 8e-32 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2224 | SECA | 59 | 3e-12 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2231 | PF05272 | 29 | 0.020 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2235 | DHBDHDRGNASE | 88 | 5e-23 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 18 | RPD_2273 | RPD_2296 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2273 | 2 | 17 | -1.207450 | carbamoyl-phosphate synthase L chain, | |
| RPD_2274 | 2 | 16 | -0.651357 | enoyl-CoA hydratase | |
| RPD_2275 | 2 | 16 | -0.931172 | AMP-dependent synthetase and ligase | |
| RPD_2276 | 1 | 16 | -1.450188 | hypothetical protein | |
| RPD_2277 | 5 | 24 | -3.307262 | beta-lactamase | |
| RPD_2278 | 4 | 24 | -3.517442 | catechol 1,2-dioxygenase | |
| RPD_2279 | 3 | 25 | -4.114964 | aldo/keto reductase | |
| RPD_2280 | 4 | 24 | -5.098909 | hypothetical protein | |
| RPD_2281 | 3 | 23 | -5.358845 | regulatory protein AsnC/Lrp | |
| RPD_2282 | 4 | 25 | -5.237200 | transketolase, central region | |
| RPD_2283 | 3 | 32 | -6.782553 | aldehyde dehydrogenase | |
| RPD_2284 | 4 | 31 | -6.009851 | dihydroxy-acid dehydratase | |
| RPD_2285 | 4 | 32 | -5.678644 | hypothetical protein | |
| RPD_2286 | 4 | 32 | -5.268324 | hypothetical protein | |
| RPD_2287 | 3 | 31 | -4.991879 | hypothetical protein | |
| RPD_2288 | 3 | 29 | -4.828295 | hypothetical protein | |
| RPD_2289 | 1 | 25 | -3.723975 | hypothetical protein | |
| RPD_2290 | 1 | 23 | -3.839182 | hypothetical protein | |
| RPD_2291 | 0 | 22 | -3.369978 | hypothetical protein | |
| RPD_2292 | 0 | 22 | -3.369019 | hypothetical protein | |
| RPD_2293 | 2 | 26 | -3.197030 | short-chain dehydrogenase/reductase SDR | |
| RPD_2294 | 1 | 26 | -2.867748 | regulatory protein ArsR | |
| RPD_2295 | 2 | 25 | -2.710701 | YgfB and YecA | |
| RPD_2296 | 2 | 22 | -2.687635 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2280 | HTHFIS | 37 | 9e-05 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2286 | V8PROTEASE | 42 | 2e-06 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| 19 | RPD_2305 | RPD_2321 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2305 | 0 | 20 | -3.163903 | RuBisCO-like protein | |
| RPD_2306 | 0 | 23 | -3.328564 | cupin 2 barrel domain-containing protein | |
| RPD_2307 | -1 | 22 | -2.712377 | short-chain dehydrogenase/reductase SDR | |
| RPD_2308 | -1 | 20 | -1.501793 | hypothetical protein | |
| RPD_2309 | -1 | 19 | -0.909186 | GCN5-like N-acetyltransferase | |
| RPD_2310 | -2 | 19 | -0.376750 | putative proteasome-type protease | |
| RPD_2311 | 0 | 15 | 3.624804 | transglutaminase-like protein | |
| RPD_2312 | 3 | 11 | 5.500090 | hypothetical protein | |
| RPD_2313 | 4 | 12 | 5.495166 | hypothetical protein | |
| RPD_2314 | 6 | 12 | 5.224577 | molybdopterin binding domain-containing protein | |
| RPD_2315 | 7 | 14 | 5.200229 | phenylacetic acid degradation-like protein | |
| RPD_2316 | 6 | 12 | 4.156936 | xanthine-guanine phosphoribosyltransferase | |
| RPD_2317 | 4 | 12 | 3.054394 | hypothetical protein | |
| RPD_2318 | 4 | 13 | 2.649493 | 5-methyltetrahydropteroyltriglutamate-- | |
| RPD_2319 | 3 | 14 | 2.342583 | glutathione S-transferase-like protein | |
| RPD_2320 | 3 | 14 | 2.170755 | DSBA oxidoreductase | |
| RPD_2321 | 2 | 16 | 1.073898 | zinc-binding alcohol dehydrogenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2310 | ACRIFLAVINRP | 1042 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2311 | RTXTOXIND | 43 | 1e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 20 | RPD_2334 | RPD_2339 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2334 | 2 | 19 | -4.973001 | major facilitator transporter | |
| RPD_2335 | 1 | 22 | -4.592068 | hypothetical protein | |
| RPD_2336 | 2 | 24 | -4.274505 | hypothetical protein | |
| RPD_2337 | 3 | 21 | -3.393586 | hypothetical protein | |
| RPD_2338 | 5 | 31 | -3.148432 | hypothetical protein | |
| RPD_2339 | 3 | 21 | -3.166849 | inosine 5'-monophosphate dehydrogenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2337 | TCRTETOQM | 217 | 4e-65 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| 21 | RPD_2369 | RPD_2396 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2369 | 2 | 21 | -3.258395 | transcriptional regulator | |
| RPD_2370 | 2 | 19 | -3.070493 | hypothetical protein | |
| RPD_2371 | 1 | 28 | -3.834662 | hypothetical protein | |
| RPD_2372 | -1 | 22 | -2.811913 | hypothetical protein | |
| RPD_2373 | -1 | 19 | -1.962308 | hypothetical protein | |
| RPD_2374 | -1 | 16 | -1.553243 | *acetylornithine and succinylornithine | |
| RPD_2375 | 0 | 16 | -1.085390 | 5-aminolevulinate synthase | |
| RPD_2376 | 0 | 15 | -1.100364 | pyridoxal kinase | |
| RPD_2377 | -1 | 16 | -1.066900 | hypothetical protein | |
| RPD_2378 | 0 | 20 | -1.589241 | benzoate transporter | |
| RPD_2380 | 2 | 23 | -2.447856 | regulatory protein GntR | |
| RPD_2381 | 3 | 31 | -3.108849 | serine hydroxymethyltransferase | |
| RPD_2382 | 3 | 32 | -3.484305 | hypothetical protein | |
| RPD_2383 | 2 | 35 | -4.427416 | Cu(I)-responsive transcriptional regulator | |
| RPD_2384 | 1 | 26 | -4.230380 | heavy metal translocating P-type ATPase | |
| RPD_2385 | 3 | 26 | -3.839625 | heavy metal transport/detoxification protein | |
| RPD_2386 | 2 | 25 | -3.890168 | hydrophobe/amphiphile efflux-1 HAE1 | |
| RPD_2387 | 3 | 24 | -4.006360 | hypothetical protein | |
| RPD_2388 | 1 | 23 | -3.803273 | secretion protein HlyD | |
| RPD_2389 | 2 | 23 | -4.199935 | hypothetical protein | |
| RPD_2390 | 8 | 33 | -6.032152 | uroporphyrin-III C-methyltransferase | |
| RPD_2391 | 8 | 28 | -6.414218 | uroporphyrin-III C-methyltransferase | |
| RPD_2392 | 4 | 18 | -3.170888 | cobyrinic acid a,c-diamide synthase | |
| RPD_2393 | 4 | 17 | -3.364096 | precorrin-4 C11-methyltransferase | |
| RPD_2395 | 4 | 16 | -3.358207 | cobalamin biosynthesis protein CbiG | |
| RPD_2396 | 2 | 14 | -2.660565 | precorrin-6y C5,15-methyltransferase subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2370 | FLAGELLIN | 58 | 9e-11 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2383 | cloacin | 30 | 0.008 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2389 | PF05272 | 30 | 0.027 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2393 | HTHFIS | 47 | 8e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 22 | RPD_2409 | RPD_2417 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2409 | 3 | 14 | -2.302814 | ABC transporter-like protein | |
| RPD_2410 | 0 | 13 | -0.938835 | ABC transporter-like protein | |
| RPD_2411 | 1 | 12 | -0.449351 | inner-membrane translocator | |
| RPD_2412 | 3 | 13 | 0.005469 | inner-membrane translocator | |
| RPD_2413 | 3 | 13 | 0.107483 | hypothetical protein | |
| RPD_2414 | 3 | 14 | 0.472221 | hypothetical protein | |
| RPD_2415 | 2 | 13 | 1.267902 | phosphate transporter | |
| RPD_2416 | 4 | 14 | 1.189053 | small multidrug resistance protein | |
| RPD_2417 | 3 | 15 | 1.911930 | peptide chain release factor 3 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2415 | PF03544 | 31 | 0.010 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2417 | cloacin | 40 | 4e-06 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| 23 | RPD_2460 | RPD_2483 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2460 | 2 | 12 | 0.254781 | class III aminotransferase | |
| RPD_2461 | 2 | 9 | 0.680160 | 5-oxoprolinase | |
| RPD_2462 | 0 | 9 | 0.825779 | 5-oxoprolinase | |
| RPD_2463 | 0 | 10 | -0.132050 | hypothetical protein | |
| RPD_2464 | 0 | 12 | -1.394902 | flagellin | |
| RPD_2465 | -1 | 13 | -1.578668 | hypothetical protein | |
| RPD_2466 | 0 | 14 | -1.996621 | regulatory protein LuxR | |
| RPD_2467 | 1 | 20 | -3.283069 | regulatory protein LuxR | |
| RPD_2468 | 1 | 22 | -3.523884 | beta-lactamase-like protein | |
| RPD_2469 | -1 | 18 | -2.183834 | thioredoxin-like protein | |
| RPD_2470 | 0 | 15 | -2.061945 | cytochrome c family protein | |
| RPD_2471 | 0 | 13 | -1.995987 | hypothetical protein | |
| RPD_2472 | 1 | 14 | -0.996939 | ATPase-like ATP-binding protein | |
| RPD_2473 | 1 | 13 | -0.391372 | TrkA-N | |
| RPD_2474 | 3 | 12 | 0.559733 | hypothetical protein | |
| RPD_2475 | 3 | 12 | 0.941282 | FAD-dependent pyridine nucleotide-disulfide | |
| RPD_2476 | 5 | 14 | 1.949438 | hypothetical protein | |
| RPD_2477 | 2 | 12 | 0.177634 | hypothetical protein | |
| RPD_2478 | 2 | 11 | -0.634919 | thioesterase superfamily protein | |
| RPD_2479 | 1 | 11 | -0.650866 | transcriptional regulator PadR-like | |
| RPD_2480 | 1 | 11 | -1.304300 | 4-hydroxybenzoyl-CoA thioesterase | |
| RPD_2481 | 3 | 12 | -1.160756 | hypothetical protein | |
| RPD_2482 | 3 | 12 | -0.938419 | hypothetical protein | |
| RPD_2483 | 2 | 15 | 1.249776 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2463 | IGASERPTASE | 37 | 3e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2468 | SYCDCHAPRONE | 40 | 7e-06 | Gram-negative bacterial type III secretion SycD cha... | |
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2469 | 56KDTSANTIGN | 28 | 0.011 | Rickettsia 56kDa type-specific antigen protein sign... | |
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2480 | FERRIBNDNGPP | 33 | 0.001 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| 24 | RPD_2507 | RPD_2522 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2507 | 3 | 22 | -2.019006 | hypothetical protein | |
| RPD_2508 | 3 | 27 | -3.286178 | type IV pilus assembly PilZ | |
| RPD_2509 | 3 | 30 | -3.527813 | hypothetical protein | |
| RPD_2510 | 3 | 30 | -3.610147 | nickel responsive regulator | |
| RPD_2511 | 3 | 23 | -2.979717 | TonB-dependent receptor, plug | |
| RPD_2512 | 3 | 22 | -2.425846 | *putative Omp2b porin | |
| RPD_2513 | 2 | 24 | -3.409597 | hypothetical protein | |
| RPD_2514 | 2 | 20 | -3.037803 | lytic transglycosylase | |
| RPD_2515 | 3 | 20 | -3.794588 | hypothetical protein | |
| RPD_2516 | 3 | 21 | -4.293237 | hypothetical protein | |
| RPD_2517 | 5 | 29 | -6.578200 | hypothetical protein | |
| RPD_2518 | 5 | 29 | -6.755258 | hypothetical protein | |
| RPD_2519 | 5 | 27 | -6.719650 | NADH dehydrogenase | |
| RPD_2520 | 4 | 26 | -6.321238 | agarase | |
| RPD_2521 | 2 | 23 | -4.327998 | alpha/beta hydrolase fold-3 protein | |
| RPD_2522 | 1 | 22 | -3.734982 | short-chain dehydrogenase/reductase SDR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2508 | PF06580 | 31 | 0.003 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2510 | HTHFIS | 54 | 7e-12 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2512 | cloacin | 36 | 6e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2513 | HTHFIS | 78 | 8e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2514 | HTHFIS | 79 | 2e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2518 | RTXTOXIND | 69 | 5e-15 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 25 | RPD_2723 | RPD_2744 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2723 | 2 | 11 | -1.877852 | hypothetical protein | |
| RPD_2724 | 3 | 12 | -2.129534 | hypothetical protein | |
| RPD_2725 | 3 | 13 | -1.871770 | *hypothetical protein | |
| RPD_2726 | 7 | 19 | -4.337768 | hypothetical protein | |
| RPD_2727 | 7 | 17 | -4.726428 | hypothetical protein | |
| RPD_2728 | 4 | 17 | -3.081980 | hypothetical protein | |
| RPD_2729 | 2 | 21 | -2.466666 | *protein-L-isoaspartate(D-aspartate) | |
| RPD_2730 | 1 | 20 | -2.411550 | Type I secretion outer membrane protein, TolC | |
| RPD_2731 | 0 | 17 | -2.146077 | hypothetical protein | |
| RPD_2732 | 0 | 17 | -2.107273 | valyl-tRNA synthetase | |
| RPD_2733 | 1 | 26 | -3.531315 | hypothetical protein | |
| RPD_2734 | -1 | 26 | -4.839530 | hypothetical protein | |
| RPD_2735 | 0 | 20 | -3.637162 | hypothetical protein | |
| RPD_2736 | -1 | 11 | -1.926794 | 3-methyladenine DNA glycosylase | |
| RPD_2737 | -1 | 12 | -1.029264 | lipoyl synthase | |
| RPD_2738 | 0 | 9 | 0.006709 | cyclase/dehydrase | |
| RPD_2739 | 0 | 9 | 0.450219 | CinA-like protein | |
| RPD_2740 | 1 | 9 | 0.495559 | 2-C-methyl-D-erythritol 4-phosphate | |
| RPD_2741 | 2 | 9 | 0.809989 | dihydrouridine synthase TIM-barrel protein | |
| RPD_2742 | 2 | 11 | 1.758725 | signal transduction histidine kinase, nitrogen | |
| RPD_2743 | 2 | 10 | 1.739244 | nitrogen metabolism transcriptional regulator | |
| RPD_2744 | 2 | 11 | 1.004223 | multi-sensor signal transduction histidine |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2740 | RTXTOXIND | 39 | 3e-05 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2741 | ACRIFLAVINRP | 678 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 26 | RPD_2754 | RPD_2763 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2754 | 3 | 10 | -1.717457 | cyclophilin type peptidyl-prolyl cis-trans | |
| RPD_2755 | 4 | 16 | -4.592728 | hypothetical protein | |
| RPD_2756 | 5 | 15 | -4.287654 | hypothetical protein | |
| RPD_2757 | 3 | 14 | -4.290371 | hypothetical protein | |
| RPD_2758 | 4 | 14 | -4.540811 | cyclophilin type peptidyl-prolyl cis-trans | |
| RPD_2759 | 7 | 33 | -7.969046 | S-adenosylmethionine:tRNA | |
| RPD_2760 | 6 | 27 | -6.298561 | queuine tRNA-ribosyltransferase | |
| RPD_2761 | 1 | 13 | -0.898163 | hypothetical protein | |
| RPD_2762 | 1 | 12 | -2.426877 | hypothetical protein | |
| RPD_2763 | 3 | 16 | -1.141737 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2755 | CHANLCOLICIN | 29 | 0.015 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2756 | OMPADOMAIN | 41 | 2e-06 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| 27 | RPD_2884 | RPD_2894 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2884 | -1 | 12 | -3.014818 | hypothetical protein | |
| RPD_2885 | -1 | 12 | -2.902462 | rare lipoprotein A | |
| RPD_2886 | 0 | 16 | -2.927444 | alpha/beta hydrolase fold protein | |
| RPD_2887 | 3 | 15 | -2.392630 | Serine-type D-Ala-D-Ala carboxypeptidase | |
| RPD_2888 | 3 | 13 | -2.267191 | hypothetical protein | |
| RPD_2889 | 4 | 14 | -2.028626 | thymidylate kinase | |
| RPD_2890 | 4 | 16 | -1.896915 | DNA polymerase III subunit delta' | |
| RPD_2891 | 3 | 15 | -0.572589 | methionyl-tRNA synthetase | |
| RPD_2892 | 2 | 13 | 0.302036 | TatD-related deoxyribonuclease | |
| RPD_2893 | 0 | 13 | 1.708783 | putative hydrolase | |
| RPD_2894 | 0 | 11 | 3.005904 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2889 | DNABINDINGHU | 84 | 7e-25 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2891 | TYPE4SSCAGA | 26 | 0.026 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2892 | PF02370 | 35 | 6e-04 | M protein repeat | |
>PF02370#M protein repeat | |||||
| 28 | RPD_2904 | RPD_2914 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2904 | 2 | 11 | -0.386480 | hypothetical protein | |
| RPD_2905 | 0 | 10 | -0.948564 | curlin associated protein | |
| RPD_2906 | 0 | 13 | -0.787213 | hypothetical protein | |
| RPD_2907 | -1 | 13 | -0.655175 | curlin associated protein | |
| RPD_2908 | -1 | 13 | -0.594701 | hypothetical protein | |
| RPD_2909 | 0 | 10 | -2.030521 | hypothetical protein | |
| RPD_2910 | 3 | 12 | -3.190129 | putative minor curlin subunit (fimbrin sef17 | |
| RPD_2911 | 4 | 14 | -3.259034 | hypothetical protein | |
| RPD_2912 | 4 | 15 | -3.705594 | hypothetical protein | |
| RPD_2913 | 5 | 28 | -4.915467 | hypothetical protein | |
| RPD_2914 | 3 | 28 | -3.986407 | putative curli production assembly/transport |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2907 | PF05272 | 35 | 6e-04 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2909 | PF06580 | 29 | 0.038 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 29 | RPD_2998 | RPD_3003 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2998 | 6 | 12 | 0.113501 | hypothetical protein | |
| RPD_2999 | 6 | 12 | 0.294831 | hypothetical protein | |
| RPD_3000 | 4 | 11 | 0.634146 | hypothetical protein | |
| RPD_3001 | 3 | 11 | 1.017602 | hypothetical protein | |
| RPD_3002 | 3 | 11 | 1.027417 | transcriptional regulators | |
| RPD_3003 | 2 | 9 | 1.288402 | acriflavin resistance protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2998 | DHBDHDRGNASE | 101 | 6e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3000 | SACTRNSFRASE | 35 | 3e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3003 | CLENTEROTOXN | 38 | 3e-04 | Clostridium enterotoxin signature. | |
>CLENTEROTOXN#Clostridium enterotoxin signature. | |||||
| 30 | RPD_3158 | RPD_3200 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3158 | 2 | 16 | -1.529301 | hypothetical protein | |
| RPD_3159 | 1 | 18 | -2.684324 | hypothetical protein | |
| RPD_3160 | 2 | 18 | -2.556885 | hypothetical protein | |
| RPD_3161 | 2 | 17 | -2.726910 | hypothetical protein | |
| RPD_3162 | 2 | 17 | -2.419304 | GCN5-like N-acetyltransferase | |
| RPD_3163 | 3 | 17 | -1.953908 | phenylacetic acid degradation-like protein | |
| RPD_3164 | 1 | 19 | -2.145753 | hypothetical protein | |
| RPD_3165 | 4 | 22 | -1.121444 | acetylornithine deacetylase | |
| RPD_3166 | 5 | 22 | -1.639810 | hypothetical protein | |
| RPD_3167 | 4 | 22 | -1.838823 | hypothetical protein | |
| RPD_3168 | 4 | 19 | -2.893714 | hypothetical protein | |
| RPD_3169 | 2 | 18 | -3.447939 | CreA | |
| RPD_3170 | 2 | 17 | -3.741206 | hypothetical protein | |
| RPD_3171 | 2 | 19 | -3.864136 | hypothetical protein | |
| RPD_3172 | 0 | 18 | -2.703730 | polysaccharide deacetylase | |
| RPD_3173 | 0 | 19 | -1.967914 | hypothetical protein | |
| RPD_3174 | 0 | 18 | -1.610105 | hypothetical protein | |
| RPD_3175 | 2 | 19 | -1.636477 | DoxX | |
| RPD_3176 | 2 | 22 | -1.492183 | malic enzyme | |
| RPD_3177 | 3 | 22 | -1.784225 | aspartyl-tRNA synthetase | |
| RPD_3178 | 2 | 21 | -2.094250 | hypothetical protein | |
| RPD_3179 | 4 | 23 | -1.652733 | ribonuclease D | |
| RPD_3180 | 5 | 24 | -2.052411 | hypothetical protein | |
| RPD_3181 | 3 | 23 | -1.894749 | Ppx/GppA phosphatase | |
| RPD_3182 | 3 | 21 | -2.237845 | polyphosphate kinase | |
| RPD_3183 | 2 | 21 | -2.145194 | hypothetical protein | |
| RPD_3184 | 2 | 22 | -2.388263 | CDP-alcohol phosphatidyltransferase | |
| RPD_3185 | 3 | 19 | -2.315525 | phosphoribosylaminoimidazole synthetase | |
| RPD_3186 | 2 | 15 | -1.382162 | phosphoribosylglycinamide formyltransferase | |
| RPD_3187 | 2 | 13 | -0.905103 | hypothetical protein | |
| RPD_3188 | 1 | 10 | -0.906011 | cold-shock DNA-binding domain-containing | |
| RPD_3189 | 2 | 14 | -1.280687 | cyclic nucleotide-binding protein | |
| RPD_3190 | 3 | 17 | -1.283084 | hypothetical protein | |
| RPD_3191 | 3 | 18 | -1.393371 | nucleoside diphosphate kinase | |
| RPD_3192 | 3 | 20 | -1.763080 | ABC transporter-like protein | |
| RPD_3193 | 3 | 20 | -1.738634 | hypothetical protein | |
| RPD_3194 | 3 | 22 | -1.328783 | hypothetical protein | |
| RPD_3195 | 3 | 22 | -1.046521 | DNA polymerase III subunit chi | |
| RPD_3196 | 5 | 17 | -1.023049 | leucyl aminopeptidase | |
| RPD_3197 | 4 | 14 | -1.331071 | permease YjgP/YjgQ | |
| RPD_3199 | 3 | 17 | -1.118433 | permease YjgP/YjgQ | |
| RPD_3200 | 3 | 17 | -1.435436 | organic solvent tolerance protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3163 | IGASERPTASE | 37 | 2e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3164 | SECYTRNLCASE | 441 | e-155 | Preprotein translocase SecY subunit signature. | |
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3173 | PF04183 | 28 | 0.005 | IucA / IucC family | |
>PF04183#IucA / IucC family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3176 | SHAPEPROTEIN | 25 | 0.017 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3186 | TCRTETOQM | 85 | 5e-20 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3187 | TCRTETOQM | 617 | 0.0 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| 31 | RPD_3229 | RPD_3242 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3229 | 3 | 11 | 1.697218 | replicative DNA helicase | |
| RPD_3230 | 3 | 14 | 2.169673 | alanine racemase | |
| RPD_3231 | 5 | 16 | 1.445207 | hypothetical protein | |
| RPD_3232 | 1 | 15 | 1.398749 | hypothetical protein | |
| RPD_3233 | 2 | 11 | -1.292438 | hypothetical protein | |
| RPD_3234 | 2 | 12 | -1.606483 | DNA repair protein RadA | |
| RPD_3235 | 2 | 13 | -1.819160 | colicin V production protein | |
| RPD_3236 | 1 | 12 | -2.153957 | amidophosphoribosyltransferase | |
| RPD_3237 | 1 | 11 | -1.994438 | short-chain dehydrogenase/reductase SDR | |
| RPD_3238 | 2 | 10 | -0.726400 | putative urea/short-chain binding protein of ABC | |
| RPD_3239 | 0 | 17 | 2.486149 | hypothetical protein | |
| RPD_3240 | -1 | 16 | 2.719280 | GCN5-like N-acetyltransferase | |
| RPD_3241 | -1 | 15 | 2.701349 | hypothetical protein | |
| RPD_3242 | -1 | 14 | 3.206655 | phage tail Collar |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3234 | OMPADOMAIN | 47 | 2e-08 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3241 | HTHFIS | 71 | 5e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 32 | RPD_3493 | RPD_3513 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3493 | 3 | 15 | 1.560299 | DEAD/DEAH box helicase-like protein | |
| RPD_3494 | 2 | 14 | 1.365013 | peptidase M50 | |
| RPD_3495 | 3 | 12 | 0.306178 | hypothetical protein | |
| RPD_3496 | 3 | 10 | -0.252257 | hypothetical protein | |
| RPD_3497 | 2 | 12 | -0.416909 | NLPA lipoprotein | |
| RPD_3498 | 1 | 12 | -1.575414 | hypothetical protein | |
| RPD_3499 | 2 | 13 | -1.240409 | phenylacetate--CoA ligase | |
| RPD_3500 | 2 | 12 | -0.078900 | lipoprotein YaeC | |
| RPD_3501 | 3 | 15 | 0.494343 | hypothetical protein | |
| RPD_3502 | 0 | 14 | -0.006974 | binding-protein-dependent transport systems | |
| RPD_3503 | -1 | 11 | -0.453310 | DL-methionine transporter ATP-binding subunit | |
| RPD_3504 | -1 | 13 | 0.385386 | Serine O-acetyltransferase | |
| RPD_3505 | 0 | 13 | -0.589971 | SufS subfamily cysteine desulfurase | |
| RPD_3506 | 0 | 14 | -0.347745 | hypothetical protein | |
| RPD_3507 | 0 | 15 | -0.447674 | hypothetical protein | |
| RPD_3508 | 0 | 17 | -0.143554 | *RNA methyltransferase TrmH, group 3 | |
| RPD_3509 | 2 | 14 | -0.614111 | hypothetical protein | |
| RPD_3510 | 2 | 13 | -2.108196 | hypothetical protein | |
| RPD_3511 | 0 | 11 | -1.338865 | hypothetical protein | |
| RPD_3512 | 3 | 17 | -4.037027 | hypothetical protein | |
| RPD_3513 | 2 | 18 | -3.439767 | *hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3493 | PF01206 | 78 | 7e-23 | SirA family protein | |
>PF01206#SirA family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3500 | UREASE | 1071 | 0.0 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3506 | PF05272 | 31 | 0.004 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| 33 | RPD_3629 | RPD_3660 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3629 | 3 | 28 | -3.534463 | hypothetical protein | |
| RPD_3630 | 3 | 27 | -3.437398 | TonB-like protein | |
| RPD_3631 | 2 | 23 | -2.805205 | biopolymer transport protein ExbD/TolR | |
| RPD_3632 | 2 | 24 | -2.030039 | MotA/TolQ/ExbB proton channel | |
| RPD_3633 | 3 | 24 | -1.583776 | hypothetical protein | |
| RPD_3634 | 3 | 25 | -2.096812 | putative hydroxylase | |
| RPD_3635 | 2 | 23 | -2.219000 | TonB-dependent receptor, plug | |
| RPD_3636 | 3 | 26 | -2.303527 | hypothetical protein | |
| RPD_3637 | 3 | 26 | -2.539257 | sensory box histidine kinase/response regulator | |
| RPD_3638 | 1 | 23 | -1.740666 | hypothetical protein | |
| RPD_3639 | 2 | 22 | -2.131094 | *putative OpgC protein | |
| RPD_3640 | 2 | 20 | -1.720069 | hypothetical protein | |
| RPD_3641 | 2 | 16 | -1.542896 | hypothetical protein | |
| RPD_3642 | 2 | 17 | -1.817668 | heavy metal efflux pump CzcA | |
| RPD_3643 | 2 | 17 | -1.261517 | hypothetical protein | |
| RPD_3644 | 2 | 16 | -2.016171 | secretion protein HlyD | |
| RPD_3645 | 2 | 16 | -2.457589 | hypothetical protein | |
| RPD_3646 | 2 | 16 | -2.609737 | outer membrane efflux protein | |
| RPD_3647 | 2 | 21 | -3.097719 | hypothetical protein | |
| RPD_3648 | 2 | 22 | -2.047848 | hypothetical protein | |
| RPD_3649 | 4 | 24 | -3.012920 | hypothetical protein | |
| RPD_3650 | 4 | 24 | -2.111390 | S-adenosylmethionine decarboxylase-like | |
| RPD_3651 | 2 | 27 | -1.080394 | hypothetical protein | |
| RPD_3652 | 2 | 26 | -0.901118 | GCN5-like N-acetyltransferase | |
| RPD_3653 | 3 | 26 | -1.096303 | hypothetical protein | |
| RPD_3654 | 4 | 27 | -2.682502 | peptidase S1C, Do | |
| RPD_3655 | 4 | 29 | -3.572166 | hypothetical protein | |
| RPD_3656 | 4 | 29 | -4.154587 | hypothetical protein | |
| RPD_3657 | 6 | 30 | -5.338705 | HflC protein | |
| RPD_3658 | 6 | 29 | -5.182027 | hypothetical protein | |
| RPD_3659 | 6 | 28 | -5.181575 | HflK protein | |
| RPD_3660 | 2 | 22 | -3.653694 | dihydrofolate reductase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3640 | ACRIFLAVINRP | 62 | 5e-15 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3641 | ACRIFLAVINRP | 54 | 6e-12 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3646 | ACRIFLAVINRP | 762 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3647 | RTXTOXIND | 40 | 8e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3659 | PYOCINKILLER | 30 | 0.038 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| 34 | RPD_3849 | RPD_3868 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3849 | 2 | 9 | 0.221439 | cold-shock DNA-binding domain-containing | |
| RPD_3850 | 2 | 11 | 0.763064 | TadE-like | |
| RPD_3851 | 3 | 10 | 0.302762 | TadE-like | |
| RPD_3852 | 3 | 11 | -0.023347 | hypothetical protein | |
| RPD_3853 | 3 | 11 | 0.145176 | hypothetical protein | |
| RPD_3854 | 0 | 9 | -0.424057 | Flp/Fap pilin component | |
| RPD_3855 | -1 | 9 | -0.906806 | peptidase A24A, prepilin type IV | |
| RPD_3856 | 0 | 10 | -2.153339 | hypothetical protein | |
| RPD_3857 | 0 | 12 | -2.021572 | Flp pilus assembly CpaB | |
| RPD_3858 | 1 | 13 | -3.045824 | hypothetical protein | |
| RPD_3859 | 2 | 16 | -3.384807 | type II and III secretion system protein | |
| RPD_3860 | 0 | 8 | -3.059670 | hypothetical protein | |
| RPD_3861 | 0 | 9 | -2.864527 | Type IV pili component-like | |
| RPD_3862 | -1 | 9 | -2.809021 | hypothetical protein | |
| RPD_3863 | 0 | 9 | -2.257347 | putative pilus assembly protein cpaE | |
| RPD_3864 | 0 | 9 | -2.137353 | type II secretion system protein E | |
| RPD_3865 | -1 | 10 | -1.406593 | type II secretion system protein | |
| RPD_3866 | 1 | 15 | 0.665945 | hypothetical protein | |
| RPD_3867 | 2 | 12 | 0.807981 | type II secretion system protein | |
| RPD_3868 | 3 | 12 | 0.883779 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3849 | IGASERPTASE | 46 | 5e-07 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3865 | HTHFIS | 74 | 2e-15 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3866 | HTHFIS | 88 | 1e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3868 | FLGHOOKAP1 | 28 | 0.035 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 35 | RPD_3929 | RPD_3978 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3929 | 2 | 12 | 0.280540 | squalene/phytoene synthase | |
| RPD_3930 | 2 | 12 | 0.517062 | squalene/phytoene synthase | |
| RPD_3931 | 0 | 17 | -1.078979 | hypothetical protein | |
| RPD_3932 | 1 | 24 | -1.663207 | hypothetical protein | |
| RPD_3933 | 2 | 38 | -5.277184 | hypothetical protein | |
| RPD_3934 | 5 | 39 | -6.543433 | hypothetical protein | |
| RPD_3935 | 6 | 39 | -7.840021 | RND superfamily transporter | |
| RPD_3936 | 5 | 34 | -7.404579 | radical SAM family protein | |
| RPD_3937 | 3 | 35 | -5.893325 | methyl-accepting chemotaxis sensory transducer | |
| RPD_3938 | 3 | 35 | -6.093894 | hypothetical protein | |
| RPD_3939 | 2 | 31 | -4.739689 | hypothetical protein | |
| RPD_3940 | 3 | 33 | -4.964368 | hypothetical protein | |
| RPD_3941 | 3 | 33 | -4.830218 | transglutaminase-like protein | |
| RPD_3942 | 3 | 35 | -4.653839 | hypothetical protein | |
| RPD_3943 | 1 | 25 | -3.351664 | transglutaminase-like protein | |
| RPD_3944 | 0 | 27 | -3.915151 | HpcH/HpaI aldolase | |
| RPD_3945 | 2 | 35 | -6.208068 | malate/L-lactate dehydrogenase | |
| RPD_3948 | 2 | 39 | -6.764680 | homoprotocatechuate degradation transcriptional | |
| RPD_3949 | 2 | 40 | -7.021407 | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase | |
| RPD_3950 | 1 | 39 | -6.999949 | 5-carboxymethyl-2-hydroxymuconate isomerase | |
| RPD_3951 | 4 | 47 | -9.006471 | 5-carboxymethyl-2-hydroxymuconate semialdehyde | |
| RPD_3952 | 4 | 44 | -8.251375 | 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD | |
| RPD_3953 | 4 | 35 | -5.596105 | 5-oxopent-3-ene-1,2,5-tricarboxylate | |
| RPD_3954 | 2 | 28 | -4.354108 | hypothetical protein | |
| RPD_3955 | 2 | 27 | -3.440969 | 2OG-Fe(II) oxygenase | |
| RPD_3956 | 3 | 22 | -2.063226 | hypothetical protein | |
| RPD_3957 | 2 | 19 | -1.434801 | hypothetical protein | |
| RPD_3958 | 1 | 15 | 0.537727 | hypothetical protein | |
| RPD_3959 | 0 | 11 | 0.664214 | hypothetical protein | |
| RPD_3960 | 0 | 10 | 2.715542 | hypothetical protein | |
| RPD_3961 | 0 | 9 | 2.560763 | cyclic nucleotide-binding protein | |
| RPD_3962 | -1 | 10 | 2.123090 | enoyl-CoA hydratase/isomerase | |
| RPD_3963 | 0 | 10 | 2.318130 | nitroreductase | |
| RPD_3964 | 0 | 15 | 0.325707 | acyl-CoA dehydrogenase-like protein | |
| RPD_3965 | 2 | 16 | 0.360673 | acyl-CoA dehydrogenase-like protein | |
| RPD_3966 | -1 | 17 | -2.407955 | acyl-CoA dehydrogenase-like protein | |
| RPD_3967 | 1 | 11 | -2.887120 | acyl-CoA synthetase | |
| RPD_3968 | 2 | 9 | -1.122420 | enoyl-CoA hydratase/isomerase | |
| RPD_3969 | 2 | 10 | -1.841660 | short-chain dehydrogenase/reductase SDR | |
| RPD_3970 | 3 | 11 | -2.102135 | hypothetical protein | |
| RPD_3971 | 3 | 10 | -2.188396 | TetR family transcriptional regulator | |
| RPD_3972 | 4 | 9 | -0.683138 | acetyl-CoA acetyltransferase | |
| RPD_3973 | 0 | 12 | 0.698101 | long-chain-fatty-acid--CoA ligase | |
| RPD_3974 | 3 | 17 | -0.483007 | hypothetical protein | |
| RPD_3975 | 4 | 17 | 1.085918 | putative outer membrane protein | |
| RPD_3976 | 3 | 16 | 1.327056 | hypothetical protein | |
| RPD_3977 | 2 | 17 | 1.601235 | hypothetical protein | |
| RPD_3978 | 2 | 17 | 1.490619 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3941 | CHLAMIDIAOMP | 30 | 0.031 | Chlamydia major outer membrane protein signature. | |
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3963 | IGASERPTASE | 45 | 5e-07 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3967 | BCTERIALGSPH | 27 | 0.028 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| 36 | RPD_4175 | RPD_4188 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4175 | 0 | 12 | 3.264623 | hypothetical protein | |
| RPD_4176 | 0 | 13 | 2.817451 | hypothetical protein | |
| RPD_4177 | 0 | 14 | 2.259708 | PUCC protein | |
| RPD_4178 | 0 | 13 | 0.679666 | hypothetical protein | |
| RPD_4179 | 3 | 15 | 0.601235 | antenna complex subunit alpha/beta | |
| RPD_4180 | 4 | 16 | 0.311316 | antenna complex subunit alpha/beta | |
| RPD_4181 | 4 | 15 | -0.189712 | phytochrome | |
| RPD_4182 | 4 | 15 | -0.606589 | response regulator receiver | |
| RPD_4183 | 0 | 11 | 1.037088 | hypothetical protein | |
| RPD_4184 | 1 | 11 | 1.546089 | NnrS | |
| RPD_4185 | 1 | 11 | 1.731580 | NnrU | |
| RPD_4186 | 2 | 12 | 1.665963 | phosphoglucomutase | |
| RPD_4187 | 2 | 11 | 1.328812 | FAD dependent oxidoreductase | |
| RPD_4188 | 3 | 11 | 1.055491 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4188 | ACRIFLAVINRP | 709 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 37 | RPD_4304 | RPD_4328 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4304 | 0 | 14 | 3.078078 | hypothetical protein | |
| RPD_4305 | 1 | 14 | 3.238971 | hypothetical protein | |
| RPD_4306 | 3 | 16 | 4.497135 | rubrerythrin | |
| RPD_4307 | 1 | 15 | 3.928692 | hypothetical protein | |
| RPD_4308 | 0 | 14 | 2.972891 | hypothetical protein | |
| RPD_4309 | 0 | 15 | 2.223058 | chemotaxis sensory transducer | |
| RPD_4310 | 0 | 16 | 1.363687 | hypothetical protein | |
| RPD_4311 | 0 | 15 | 0.936711 | D-3-phosphoglycerate dehydrogenase | |
| RPD_4312 | -1 | 16 | 0.495900 | phosphoserine aminotransferase | |
| RPD_4313 | -2 | 15 | 1.001944 | chemotaxis sensory transducer | |
| RPD_4314 | 2 | 12 | 1.897242 | methyl-accepting chemotaxis sensory transducer | |
| RPD_4315 | 3 | 14 | 1.839330 | GCN5-like N-acetyltransferase | |
| RPD_4316 | 3 | 13 | 1.597935 | glutathione S-transferase-like protein | |
| RPD_4317 | 2 | 11 | 1.227886 | hypothetical protein | |
| RPD_4318 | 2 | 11 | 1.523254 | hypothetical protein | |
| RPD_4319 | 0 | 12 | -0.038106 | hypothetical protein | |
| RPD_4320 | -2 | 13 | -0.421710 | hypothetical protein | |
| RPD_4321 | -2 | 11 | -0.197079 | major facilitator transporter | |
| RPD_4322 | -2 | 9 | 0.194488 | phosphoglucosamine mutase | |
| RPD_4323 | -2 | 9 | 1.250284 | hypothetical protein | |
| RPD_4324 | 0 | 13 | 1.190337 | L-lactate dehydrogenase (cytochrome) | |
| RPD_4325 | 1 | 15 | 1.999656 | enoyl-CoA hydratase/isomerase | |
| RPD_4326 | 2 | 16 | 2.241591 | hypothetical protein | |
| RPD_4327 | 4 | 15 | 1.782229 | shikimate 5-dehydrogenase | |
| RPD_4328 | 2 | 14 | 1.698704 | XRE family transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4305 | PF07520 | 30 | 0.026 | Virulence protein SrfB | |
>PF07520#Virulence protein SrfB | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4319 | PF03544 | 36 | 1e-04 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4323 | adhesinmafb | 30 | 0.024 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| 38 | RPD_4350 | RPD_4366 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4350 | 1 | 13 | 3.189372 | hypothetical protein | |
| RPD_4351 | 1 | 11 | 1.790219 | MobA/MobL protein | |
| RPD_4352 | 1 | 11 | 1.404234 | Type IV secretory pathway VirD4 components-like | |
| RPD_4353 | 1 | 12 | 1.202457 | hypothetical protein | |
| RPD_4354 | 2 | 11 | 0.500358 | hypothetical protein | |
| RPD_4355 | 2 | 11 | -0.263630 | hypothetical protein | |
| RPD_4356 | 1 | 11 | -0.060223 | hypothetical protein | |
| RPD_4357 | 0 | 11 | 1.219311 | hypothetical protein | |
| RPD_4358 | 0 | 12 | 2.044098 | conjugal transfer TraD | |
| RPD_4359 | 1 | 12 | 3.286450 | hypothetical protein | |
| RPD_4360 | 0 | 12 | 2.895198 | conjugal transfer relaxase TraA | |
| RPD_4361 | 0 | 12 | 3.263613 | hypothetical protein | |
| RPD_4362 | 0 | 12 | 3.722811 | hypothetical protein | |
| RPD_4363 | 0 | 12 | 3.689764 | metallophosphoesterase | |
| RPD_4364 | -1 | 13 | 3.810570 | hypothetical protein | |
| RPD_4365 | 2 | 14 | 2.293852 | endodeoxyribonuclease RusA | |
| RPD_4366 | 2 | 15 | 2.161257 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4356 | HTHFIS | 83 | 4e-22 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4359 | HTHTETR | 70 | 6e-17 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4365 | DHBDHDRGNASE | 99 | 7e-27 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4366 | DHBDHDRGNASE | 102 | 5e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 39 | RPD_0094 | RPD_0099 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0094 | -2 | 11 | 2.242393 | type 11 methyltransferase | |
| RPD_0095 | -1 | 12 | 1.755357 | hypothetical protein | |
| RPD_0096 | 1 | 13 | 1.763302 | HemK family modification methylase | |
| RPD_0097 | 1 | 15 | 1.564261 | peptide chain release factor 1 | |
| RPD_0098 | 1 | 16 | 1.625322 | PTSINtr with GAF domain, PtsP | |
| RPD_0099 | 1 | 16 | 1.053815 | aspartate kinase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0094 | SECBCHAPRONE | 28 | 0.019 | Bacterial protein-transport SecB chaperone protein ... | |
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0095 | IGASERPTASE | 28 | 0.034 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0098 | PHPHTRNFRASE | 579 | 0.0 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0099 | CARBMTKINASE | 30 | 0.017 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| 40 | RPD_0743 | RPD_0748 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_0743 | 5 | 34 | -6.823936 | HWE histidine kinase | |
| RPD_0744 | 7 | 41 | -9.358841 | integrase catalytic subunit | |
| RPD_0745 | 10 | 51 | -11.363528 | sugar transferase | |
| RPD_0746 | 8 | 47 | -10.645214 | group 1 glycosyl transferase | |
| RPD_0747 | 8 | 44 | -10.446331 | dTDP-4-dehydrorhamnose reductase | |
| RPD_0748 | 8 | 44 | -10.065783 | polysaccharide biosynthesis protein CapD |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0743 | PF06580 | 38 | 6e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0745 | NUCEPIMERASE | 37 | 1e-04 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0747 | NUCEPIMERASE | 37 | 5e-05 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_0748 | NUCEPIMERASE | 60 | 2e-12 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 41 | RPD_1002 | RPD_1013 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1002 | 1 | 12 | 2.904547 | secretion protein HlyD | |
| RPD_1003 | 1 | 11 | 2.383328 | adenylyl cyclase class-3/4/guanylyl cyclase | |
| RPD_1004 | 0 | 10 | 1.156642 | AsmA | |
| RPD_1005 | 0 | 8 | 0.206413 | cyclic nucleotide-binding protein | |
| RPD_1006 | 0 | 8 | 0.441904 | acriflavin resistance protein | |
| RPD_1007 | 0 | 11 | -0.379298 | secretion protein HlyD | |
| RPD_1008 | 1 | 13 | -0.781172 | OmpA/MotB | |
| RPD_1009 | 1 | 13 | -0.576578 | peptidase C14, caspase catalytic subunit p20 | |
| RPD_1010 | 0 | 11 | -0.013134 | hypothetical protein | |
| RPD_1011 | -1 | 12 | -0.126268 | peptidase C14, caspase catalytic subunit p20 | |
| RPD_1012 | -1 | 11 | -0.869503 | OmpA/MotB | |
| RPD_1013 | -2 | 10 | -0.462517 | outer membrane autotransporter barrel |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1002 | RTXTOXIND | 31 | 0.009 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1004 | PF07132 | 32 | 0.008 | Harpin protein (HrpN) | |
>PF07132#Harpin protein (HrpN) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1006 | ACRIFLAVINRP | 635 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1007 | RTXTOXIND | 29 | 0.031 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1008 | OMPADOMAIN | 92 | 3e-24 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1009 | PF03544 | 34 | 0.001 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1011 | IGASERPTASE | 41 | 2e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1012 | OMPADOMAIN | 88 | 9e-23 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1013 | PERTACTIN | 59 | 5e-11 | Pertactin signature. | |
>PERTACTIN#Pertactin signature. | |||||
| 42 | RPD_1388 | RPD_1395 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1388 | -2 | 13 | -2.566664 | 3-hydroxybutyrate dehydrogenase | |
| RPD_1389 | -1 | 11 | -1.901029 | plasmid stabilization system protein | |
| RPD_1390 | -1 | 10 | -1.109654 | hypothetical protein | |
| RPD_1391 | 0 | 10 | -0.459330 | polysaccharide biosynthesis protein | |
| RPD_1392 | -1 | 13 | -1.714155 | hypothetical protein | |
| RPD_1393 | -2 | 12 | -1.107201 | methyl-accepting chemotaxis sensory transducer | |
| RPD_1394 | -3 | 11 | 0.003080 | chemotaxis sensory transducer | |
| RPD_1395 | -1 | 10 | 0.449906 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1388 | DHBDHDRGNASE | 113 | 2e-32 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1391 | RTXTOXIND | 31 | 0.014 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1392 | CHANLCOLICIN | 30 | 0.003 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1394 | FLAGELLIN | 30 | 0.015 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1395 | SURFACELAYER | 29 | 0.002 | Lactobacillus surface layer protein signature. | |
>SURFACELAYER#Lactobacillus surface layer protein signature. | |||||
| 43 | RPD_1490 | RPD_1501 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1490 | 0 | 15 | -3.254630 | serine/threonine protein kinase | |
| RPD_1491 | 1 | 16 | -4.346487 | transport-associated protein | |
| RPD_1492 | -1 | 18 | -4.398891 | putative phosphoketolase | |
| RPD_1493 | -1 | 23 | -4.664047 | response regulator receiver | |
| RPD_1494 | -1 | 23 | -4.949791 | protein-glutamate O-methyltransferase | |
| RPD_1495 | -1 | 23 | -3.930600 | hypothetical protein | |
| RPD_1496 | -2 | 21 | -3.214954 | response regulator and cylclic diguanylate | |
| RPD_1497 | -2 | 17 | -2.420952 | multi-sensor hybrid histidine kinase | |
| RPD_1498 | -1 | 10 | -0.533469 | hypothetical protein | |
| RPD_1499 | 1 | 9 | -0.291553 | LuxR family two component transcriptional | |
| RPD_1500 | 2 | 13 | -0.811942 | short-chain dehydrogenase/reductase SDR | |
| RPD_1501 | 1 | 13 | -1.395822 | short-chain dehydrogenase/reductase SDR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1490 | YERSSTKINASE | 42 | 3e-06 | Yersinia serine/threonine protein kinase signature. | |
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1493 | HTHFIS | 63 | 2e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1496 | HTHFIS | 56 | 1e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1497 | HTHFIS | 76 | 3e-16 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1499 | HTHFIS | 113 | 1e-31 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1500 | DHBDHDRGNASE | 82 | 2e-20 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1501 | DHBDHDRGNASE | 123 | 3e-36 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 44 | RPD_1553 | RPD_1563 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1553 | -1 | 16 | -1.636663 | regulatory protein TetR | |
| RPD_1554 | -1 | 15 | -1.879630 | cytochrome B561 | |
| RPD_1555 | 1 | 10 | -1.886692 | secretion protein HlyD | |
| RPD_1556 | 1 | 9 | -1.875267 | acriflavin resistance protein | |
| RPD_1557 | 1 | 10 | -1.952340 | hypothetical protein | |
| RPD_1558 | 1 | 10 | -1.717974 | response regulator receiver | |
| RPD_1559 | 1 | 10 | -1.739345 | ATPase-like ATP-binding protein | |
| RPD_1560 | 1 | 9 | -1.558865 | heme peroxidase | |
| RPD_1561 | -2 | 10 | -0.810736 | Type I secretion system ATPase, PrtD | |
| RPD_1562 | -1 | 11 | -1.386723 | RTX toxins and related Ca2+-binding | |
| RPD_1563 | 0 | 11 | -2.194420 | Type I secretion membrane fusion protein, HlyD |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1553 | HTHTETR | 67 | 8e-16 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1555 | RTXTOXIND | 44 | 9e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1556 | ACRIFLAVINRP | 448 | e-142 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1558 | HTHFIS | 51 | 6e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1559 | PF06580 | 32 | 0.004 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1560 | RTXTOXINA | 91 | 6e-20 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1562 | RTXTOXINA | 119 | 1e-29 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1563 | RTXTOXIND | 286 | 3e-94 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 45 | RPD_1631 | RPD_1639 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1631 | 0 | 10 | 2.659206 | group 1 glycosyl transferase | |
| RPD_1632 | 1 | 11 | 2.205591 | pyridoxal-5'-phosphate-dependent enzyme subunit | |
| RPD_1633 | -1 | 11 | 1.891097 | hypothetical protein | |
| RPD_1634 | -1 | 9 | 0.727653 | major facilitator transporter | |
| RPD_1635 | 0 | 9 | -0.982791 | mandelate racemase/muconate lactonizing enzyme | |
| RPD_1636 | 1 | 8 | 0.240504 | hypothetical protein | |
| RPD_1637 | 0 | 9 | 0.351860 | ABC transporter-like protein | |
| RPD_1638 | 0 | 10 | 0.272526 | hypothetical protein | |
| RPD_1639 | 1 | 11 | 0.158694 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1631 | ACETATEKNASE | 33 | 0.002 | Acetate kinase family signature. | |
>ACETATEKNASE#Acetate kinase family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1633 | IGASERPTASE | 33 | 0.002 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1634 | FLGLRINGFLGH | 30 | 0.019 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1637 | PF07201 | 30 | 0.010 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1639 | SYCDCHAPRONE | 44 | 4e-07 | Gram-negative bacterial type III secretion SycD cha... | |
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD | |||||
| 46 | RPD_1666 | RPD_1702 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1666 | 1 | 12 | 0.191844 | ATPase-like ATP-binding protein | |
| RPD_1667 | 3 | 12 | -1.222520 | hypothetical protein | |
| RPD_1668 | 4 | 11 | -1.593761 | flagellar hook-associated protein | |
| RPD_1669 | 4 | 11 | -1.641581 | hypothetical protein | |
| RPD_1670 | 6 | 15 | -2.355792 | flagellin | |
| RPD_1672 | -1 | 14 | -1.663902 | flagellar biosynthesis repressor FlbT | |
| RPD_1673 | 0 | 15 | 0.480252 | flagellar biosynthesis regulatory protein FlaF | |
| RPD_1674 | 1 | 14 | 0.057473 | hypothetical protein | |
| RPD_1675 | 1 | 14 | 0.154608 | hypothetical protein | |
| RPD_1676 | 1 | 13 | -0.114725 | chemotactic signal-response protein CheL | |
| RPD_1677 | 0 | 14 | 1.292393 | flagellar basal body P-ring protein | |
| RPD_1678 | 0 | 14 | 0.841235 | flagellar assembly regulator FliX | |
| RPD_1679 | -1 | 14 | -0.221720 | transcriptional regulators, TraR/DksA family | |
| RPD_1680 | 1 | 15 | 0.048389 | hypothetical protein | |
| RPD_1681 | 1 | 12 | -0.041203 | flagellar basal body L-ring protein | |
| RPD_1682 | 0 | 12 | 0.183212 | flagellar basal body P-ring biosynthesis protein | |
| RPD_1683 | 0 | 12 | -0.839249 | flagellar basal body rod protein FlgG | |
| RPD_1684 | 2 | 9 | -1.155886 | flagellar basal body rod protein FlgF | |
| RPD_1685 | 3 | 9 | 1.733806 | flagellar basal body-associated protein FliL | |
| RPD_1686 | 1 | 10 | 1.921230 | flagellar motor switch protein FliM | |
| RPD_1687 | 2 | 9 | 3.354713 | hypothetical protein | |
| RPD_1688 | 2 | 9 | 3.138365 | hypothetical protein | |
| RPD_1689 | 1 | 8 | 3.202818 | hypothetical protein | |
| RPD_1690 | 1 | 7 | 3.312621 | hypothetical protein | |
| RPD_1691 | 3 | 14 | 1.920278 | flagellar biosynthesis protein FliP | |
| RPD_1692 | 3 | 12 | 1.702819 | hypothetical protein | |
| RPD_1693 | 0 | 12 | -2.240870 | flagellar basal body rod protein FlgB | |
| RPD_1694 | -2 | 16 | -4.244588 | flagellar basal body rod protein FlgC | |
| RPD_1695 | -2 | 8 | -1.673275 | flagellar hook-basal body protein FliE | |
| RPD_1696 | -1 | 8 | -0.763844 | flagellar biosynthesis protein FliQ | |
| RPD_1697 | 0 | 8 | -0.338524 | flagellar biosynthesis protein FliR | |
| RPD_1698 | 0 | 9 | -0.337259 | flagellar biosynthesis protein FlhB | |
| RPD_1699 | 0 | 9 | 0.058224 | hypothetical protein | |
| RPD_1700 | -1 | 14 | 1.681980 | multi-sensor hybrid histidine kinase | |
| RPD_1701 | 1 | 14 | 1.037818 | import inner membrane translocase subunit Tim44 | |
| RPD_1702 | -1 | 15 | -0.940300 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1666 | HTHFIS | 99 | 9e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1667 | FLGHOOKAP1 | 40 | 3e-05 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1668 | FLGHOOKAP1 | 96 | 7e-23 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1670 | FLAGELLIN | 46 | 5e-07 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1676 | FLGFLGJ | 36 | 1e-05 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1677 | FLGPRINGFLGI | 382 | e-134 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1678 | PF05272 | 28 | 0.011 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1681 | FLGLRINGFLGH | 164 | 2e-52 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1683 | FLGHOOKAP1 | 38 | 3e-05 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1684 | FLGHOOKAP1 | 28 | 0.035 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1686 | FLGMOTORFLIM | 280 | 3e-94 | Flagellar motor switch protein FliM signature. | |
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1688 | IGASERPTASE | 39 | 2e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1690 | PF03544 | 48 | 1e-07 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1691 | FLGBIOSNFLIP | 264 | 1e-91 | Escherichia coli: Flagellar biosynthetic protein Fl... | |
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1692 | IGASERPTASE | 48 | 5e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1694 | FLGHOOKAP1 | 32 | 5e-04 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1695 | FLGHOOKFLIE | 40 | 2e-07 | Flagellar hook-basal body complex protein FliE signa... | |
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1696 | TYPE3IMQPROT | 55 | 5e-14 | Type III secretion system inner membrane Q protein ... | |
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1697 | TYPE3IMRPROT | 120 | 3e-35 | Type III secretion system inner membrane R protein ... | |
>TYPE3IMRPROT#Type III secretion system inner membrane R protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1698 | TYPE3IMSPROT | 315 | e-108 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1700 | HTHFIS | 79 | 3e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1701 | 60KDINNERMP | 31 | 0.006 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1702 | PF06776 | 28 | 0.035 | Invasion associated locus B | |
>PF06776#Invasion associated locus B | |||||
| 47 | RPD_1869 | RPD_1878 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_1869 | -2 | 12 | -0.691414 | short-chain dehydrogenase/reductase SDR | |
| RPD_1870 | -3 | 11 | -0.581867 | enoyl-CoA hydratase | |
| RPD_1871 | -2 | 9 | -0.623990 | long-chain-fatty-acid--CoA ligase | |
| RPD_1872 | -1 | 8 | -0.079835 | sensor histidine kinase | |
| RPD_1873 | 1 | 9 | 0.373219 | hypothetical protein | |
| RPD_1874 | 0 | 10 | 0.401779 | LysR family transcriptional regulator | |
| RPD_1875 | 0 | 9 | 0.138414 | hypothetical protein | |
| RPD_1876 | -1 | 8 | 0.527440 | hypothetical protein | |
| RPD_1877 | -1 | 9 | 0.892026 | hypothetical protein | |
| RPD_1878 | 0 | 10 | 0.292777 | phosphoenolpyruvate carboxylase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1869 | DHBDHDRGNASE | 69 | 9e-16 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1870 | PREPILNPTASE | 28 | 0.035 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1872 | HTHFIS | 54 | 1e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1875 | PF03544 | 36 | 8e-05 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1877 | OMPADOMAIN | 75 | 7e-17 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_1878 | DHBDHDRGNASE | 99 | 2e-26 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 48 | RPD_2011 | RPD_2018 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2011 | -2 | 9 | 1.205828 | transposase and inactivated derivative | |
| RPD_2012 | -2 | 9 | 0.895855 | bacteriophage protein | |
| RPD_2013 | -2 | 8 | 0.669722 | putative phage cell wall peptidase, NlpC/P60 | |
| RPD_2014 | -1 | 7 | 0.638641 | gene transfer agent (GTA) orfg15 | |
| RPD_2015 | -1 | 8 | 0.611192 | hypothetical protein | |
| RPD_2016 | -1 | 8 | 0.548406 | hypothetical protein | |
| RPD_2017 | -1 | 9 | 0.562114 | putative glycohydrolase | |
| RPD_2018 | 2 | 14 | 0.580755 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2011 | V8PROTEASE | 58 | 3e-11 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2012 | HTHFIS | 81 | 8e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2013 | PF06580 | 43 | 2e-06 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2017 | SUBTILISIN | 146 | 1e-40 | Subtilisin serine protease family (S8) signature. | |
>SUBTILISIN#Subtilisin serine protease family (S8) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2018 | PF06580 | 32 | 0.007 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 49 | RPD_2035 | RPD_2039 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2035 | 1 | 13 | -1.228830 | hypothetical protein | |
| RPD_2036 | 1 | 16 | -2.337178 | hypothetical protein | |
| RPD_2037 | 1 | 16 | -2.230800 | ferredoxin | |
| RPD_2038 | 0 | 17 | -2.311984 | peptidase S1C, Do | |
| RPD_2039 | 0 | 15 | -2.228180 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2035 | 2FE2SRDCTASE | 32 | 0.006 | Ferric iron reductase signature. | |
>2FE2SRDCTASE#Ferric iron reductase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2036 | HTHTETR | 78 | 4e-20 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2037 | RTXTOXIND | 50 | 6e-09 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2038 | RTXTOXIND | 39 | 3e-05 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2039 | ACRIFLAVINRP | 487 | e-158 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 50 | RPD_2398 | RPD_2405 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2398 | -1 | 13 | -2.024454 | precorrin-3B C17-methyltransferase | |
| RPD_2399 | 0 | 15 | -2.935566 | precorrin-2 C20-methyltransferase | |
| RPD_2400 | -1 | 15 | -2.794377 | precorrin-8X methylmutase | |
| RPD_2401 | -1 | 14 | -2.566571 | hypothetical protein | |
| RPD_2402 | -1 | 12 | -2.343416 | citrate utilization protein B | |
| RPD_2403 | -1 | 12 | -1.853815 | tricarballylate dehydrogenase | |
| RPD_2404 | -2 | 15 | -1.924946 | nicotinate-nucleotide-dimethylbenzimidazole | |
| RPD_2405 | -1 | 16 | -1.992245 | cobalamin 5'-phosphate synthase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2398 | TCRTETB | 29 | 0.037 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2401 | HTHFIS | 50 | 2e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2402 | PF06580 | 31 | 0.023 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2403 | PF06580 | 36 | 4e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2404 | HTHFIS | 53 | 4e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2405 | HTHFIS | 63 | 5e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 51 | RPD_2415 | RPD_2432 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2415 | 2 | 13 | 1.267902 | phosphate transporter | |
| RPD_2416 | 4 | 14 | 1.189053 | small multidrug resistance protein | |
| RPD_2417 | 3 | 15 | 1.911930 | peptide chain release factor 3 | |
| RPD_2418 | 1 | 14 | 0.787389 | hypothetical protein | |
| RPD_2419 | 0 | 13 | 1.068518 | hypothetical protein | |
| RPD_2420 | -2 | 13 | 0.999251 | integral membrane protein | |
| RPD_2421 | -1 | 12 | 0.407687 | hypothetical protein | |
| RPD_2422 | 0 | 12 | 1.128097 | NmrA-like | |
| RPD_2423 | -1 | 13 | 0.333868 | regulatory protein TetR | |
| RPD_2424 | -1 | 12 | 0.407394 | hypothetical protein | |
| RPD_2425 | 0 | 12 | -0.704380 | hypothetical protein | |
| RPD_2426 | -1 | 10 | -1.093804 | hypothetical protein | |
| RPD_2427 | -1 | 10 | -0.803157 | hypothetical protein | |
| RPD_2428 | -1 | 10 | -1.843209 | hypothetical protein | |
| RPD_2429 | 0 | 11 | -2.188594 | hypothetical protein | |
| RPD_2430 | 0 | 11 | -1.855146 | CHASE2 domain-containing protein | |
| RPD_2431 | 0 | 14 | -1.183807 | hypothetical protein | |
| RPD_2432 | -1 | 13 | -1.691036 | multi-sensor signal transduction histidine |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2415 | PF03544 | 31 | 0.010 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2417 | cloacin | 40 | 4e-06 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2421 | DHBDHDRGNASE | 113 | 2e-32 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2422 | PRTACTNFAMLY | 33 | 0.002 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2423 | V8PROTEASE | 43 | 1e-06 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2425 | BORPETOXINB | 28 | 0.032 | Bordetella pertussis toxin B subunit signature. | |
>BORPETOXINB#Bordetella pertussis toxin B subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2428 | HTHFIS | 85 | 3e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2429 | HTHFIS | 60 | 1e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2430 | PF06580 | 46 | 2e-07 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2432 | RTXTOXIND | 31 | 0.002 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 52 | RPD_2508 | RPD_2518 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2508 | 3 | 27 | -3.286178 | type IV pilus assembly PilZ | |
| RPD_2509 | 3 | 30 | -3.527813 | hypothetical protein | |
| RPD_2510 | 3 | 30 | -3.610147 | nickel responsive regulator | |
| RPD_2511 | 3 | 23 | -2.979717 | TonB-dependent receptor, plug | |
| RPD_2512 | 3 | 22 | -2.425846 | *putative Omp2b porin | |
| RPD_2513 | 2 | 24 | -3.409597 | hypothetical protein | |
| RPD_2514 | 2 | 20 | -3.037803 | lytic transglycosylase | |
| RPD_2515 | 3 | 20 | -3.794588 | hypothetical protein | |
| RPD_2516 | 3 | 21 | -4.293237 | hypothetical protein | |
| RPD_2517 | 5 | 29 | -6.578200 | hypothetical protein | |
| RPD_2518 | 5 | 29 | -6.755258 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2508 | PF06580 | 31 | 0.003 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2510 | HTHFIS | 54 | 7e-12 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2512 | cloacin | 36 | 6e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2513 | HTHFIS | 78 | 8e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2514 | HTHFIS | 79 | 2e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2518 | RTXTOXIND | 69 | 5e-15 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 53 | RPD_2587 | RPD_2592 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2587 | 0 | 6 | 0.002079 | hypothetical protein | |
| RPD_2588 | 0 | 8 | -0.587341 | dienelactone hydrolase | |
| RPD_2589 | 0 | 10 | -1.184673 | hypothetical protein | |
| RPD_2590 | 0 | 9 | -0.688967 | hypothetical protein | |
| RPD_2591 | 2 | 10 | -0.851559 | hypothetical protein | |
| RPD_2592 | 1 | 12 | -0.822793 | LysR, substrate-binding |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2587 | PF08280 | 32 | 0.004 | M protein trans-acting positive regulator | |
>PF08280#M protein trans-acting positive regulator | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2590 | HTHFIS | 584 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2591 | PF06580 | 47 | 1e-07 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2592 | HTHFIS | 421 | e-147 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 54 | RPD_2776 | RPD_2786 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2776 | -2 | 8 | 0.388902 | hypothetical protein | |
| RPD_2777 | -1 | 8 | 0.930905 | hypothetical protein | |
| RPD_2778 | 0 | 9 | 0.856820 | bifunctional N-acetylglucosamine-1-phosphate | |
| RPD_2779 | 0 | 8 | 1.284788 | glucosamine--fructose-6-phosphate | |
| RPD_2780 | 0 | 10 | 1.344486 | hypothetical protein | |
| RPD_2781 | 0 | 12 | 2.073762 | DEAD/DEAH box helicase-like protein | |
| RPD_2782 | -1 | 12 | 0.283799 | hypothetical protein | |
| RPD_2783 | -1 | 11 | -0.725777 | transcription-repair coupling factor | |
| RPD_2784 | 0 | 10 | -0.596739 | hypothetical protein | |
| RPD_2785 | 1 | 11 | -1.274027 | putative acid-CoA ligase | |
| RPD_2786 | 1 | 11 | -0.686634 | extracellular solute-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2776 | SECFTRNLCASE | 320 | e-110 | Bacterial translocase SecF protein signature. | |
>SECFTRNLCASE#Bacterial translocase SecF protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2777 | SECFTRNLCASE | 83 | 1e-19 | Bacterial translocase SecF protein signature. | |
>SECFTRNLCASE#Bacterial translocase SecF protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2780 | OUTRMMBRANEA | 35 | 8e-04 | Outer membrane protein A signature. | |
>OUTRMMBRANEA#Outer membrane protein A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2781 | IGASERPTASE | 31 | 0.013 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2783 | HTHFIS | 39 | 1e-06 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2786 | PRTACTNFAMLY | 31 | 0.004 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
| 55 | RPD_2889 | RPD_2895 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2889 | 4 | 14 | -2.028626 | thymidylate kinase | |
| RPD_2890 | 4 | 16 | -1.896915 | DNA polymerase III subunit delta' | |
| RPD_2891 | 3 | 15 | -0.572589 | methionyl-tRNA synthetase | |
| RPD_2892 | 2 | 13 | 0.302036 | TatD-related deoxyribonuclease | |
| RPD_2893 | 0 | 13 | 1.708783 | putative hydrolase | |
| RPD_2894 | 0 | 11 | 3.005904 | hypothetical protein | |
| RPD_2895 | -1 | 11 | 2.969684 | acyl-CoA synthetase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2889 | DNABINDINGHU | 84 | 7e-25 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2891 | TYPE4SSCAGA | 26 | 0.026 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2892 | PF02370 | 35 | 6e-04 | M protein repeat | |
>PF02370#M protein repeat | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2895 | INFPOTNTIATR | 37 | 1e-04 | Macrophage infectivity potentiator signature. | |
>INFPOTNTIATR#Macrophage infectivity potentiator signature. | |||||
| 56 | RPD_2998 | RPD_3006 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_2998 | 6 | 12 | 0.113501 | hypothetical protein | |
| RPD_2999 | 6 | 12 | 0.294831 | hypothetical protein | |
| RPD_3000 | 4 | 11 | 0.634146 | hypothetical protein | |
| RPD_3001 | 3 | 11 | 1.017602 | hypothetical protein | |
| RPD_3002 | 3 | 11 | 1.027417 | transcriptional regulators | |
| RPD_3003 | 2 | 9 | 1.288402 | acriflavin resistance protein | |
| RPD_3004 | -1 | 11 | 0.753910 | secretion protein HlyD | |
| RPD_3005 | -1 | 11 | 0.666940 | hypothetical protein | |
| RPD_3006 | -2 | 9 | 0.528257 | exodeoxyribonuclease III |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_2998 | DHBDHDRGNASE | 101 | 6e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3000 | SACTRNSFRASE | 35 | 3e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3003 | CLENTEROTOXN | 38 | 3e-04 | Clostridium enterotoxin signature. | |
>CLENTEROTOXN#Clostridium enterotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3004 | TCRTETA | 266 | 8e-88 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3006 | IGASERPTASE | 37 | 3e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 57 | RPD_3031 | RPD_3039 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3031 | 1 | 12 | 1.229232 | CTP synthetase | |
| RPD_3032 | 1 | 13 | 0.321529 | preprotein translocase subunit SecG | |
| RPD_3033 | 0 | 10 | 0.372875 | triosephosphate isomerase | |
| RPD_3034 | 0 | 10 | -0.220522 | PpiC-type peptidyl-prolyl cis-trans isomerase | |
| RPD_3035 | -1 | 10 | -1.617846 | hypothetical protein | |
| RPD_3036 | 0 | 11 | -0.354101 | anthranilate phosphoribosyltransferase | |
| RPD_3037 | 1 | 11 | -0.908024 | indole-3-glycerol-phosphate synthase | |
| RPD_3038 | 1 | 11 | -0.268895 | molybdenum cofactor biosynthesis protein MoaC | |
| RPD_3039 | 0 | 12 | -0.032423 | ATPase, E1-E2 type |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3031 | NUCEPIMERASE | 31 | 0.008 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3033 | CHANLCOLICIN | 30 | 0.035 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3037 | CLENTEROTOXN | 25 | 0.013 | Clostridium enterotoxin signature. | |
>CLENTEROTOXN#Clostridium enterotoxin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3038 | HTHFIS | 88 | 5e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3039 | HTHFIS | 68 | 9e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 58 | RPD_3203 | RPD_3211 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3203 | 0 | 13 | 0.128301 | hypothetical protein | |
| RPD_3204 | -1 | 11 | 0.420588 | 4-hydroxythreonine-4-phosphate dehydrogenase | |
| RPD_3205 | 0 | 12 | 0.444234 | dimethyladenosine transferase | |
| RPD_3206 | 0 | 12 | 0.692869 | alcohol dehydrogenase GroES-like protein | |
| RPD_3207 | -2 | 11 | 0.284105 | hypothetical protein | |
| RPD_3208 | -2 | 12 | -0.455454 | hypothetical protein | |
| RPD_3209 | -2 | 11 | -0.992239 | guanylate kinase | |
| RPD_3210 | -2 | 13 | -1.320416 | hypothetical protein | |
| RPD_3211 | -1 | 15 | -1.146668 | aminodeoxychorismate lyase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3203 | SECETRNLCASE | 36 | 9e-07 | Bacterial translocase SecE signature. | |
>SECETRNLCASE#Bacterial translocase SecE signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3204 | TCRTETOQM | 85 | 4e-20 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3205 | PF06872 | 32 | 0.005 | EspG protein | |
>PF06872#EspG protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3206 | DHBDHDRGNASE | 119 | 1e-34 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3208 | DHBDHDRGNASE | 110 | 2e-31 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3211 | HTHTETR | 60 | 2e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 59 | RPD_3319 | RPD_3331 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3319 | 0 | 11 | -1.606638 | hypothetical protein | |
| RPD_3320 | -1 | 11 | -1.522113 | hypothetical protein | |
| RPD_3321 | 0 | 11 | -1.127037 | hypothetical protein | |
| RPD_3322 | 0 | 10 | -1.409475 | glutathione S-transferase-like protein | |
| RPD_3323 | 1 | 11 | -1.167848 | hypothetical protein | |
| RPD_3324 | 0 | 16 | -1.048483 | hypothetical protein | |
| RPD_3325 | 0 | 20 | -3.272068 | 2,5-didehydrogluconate reductase | |
| RPD_3326 | 0 | 19 | -3.276194 | helix-turn-helix type 3 | |
| RPD_3327 | 1 | 18 | -3.252668 | magnesium transporter | |
| RPD_3328 | 0 | 15 | -2.238610 | polysaccharide deacetylase | |
| RPD_3329 | 0 | 14 | -2.317084 | hypothetical protein | |
| RPD_3330 | -1 | 10 | -1.754768 | polysaccharide deacetylase | |
| RPD_3331 | -1 | 9 | -0.217247 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3319 | NUCEPIMERASE | 68 | 7e-15 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3323 | PF05272 | 37 | 9e-05 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3325 | DHBDHDRGNASE | 107 | 3e-30 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3326 | DHBDHDRGNASE | 103 | 1e-28 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3328 | HTHTETR | 63 | 7e-15 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3329 | RTXTOXIND | 49 | 2e-08 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3330 | ACRIFLAVINRP | 1069 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3331 | PF03544 | 59 | 2e-12 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| 60 | RPD_3400 | RPD_3411 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3400 | 1 | 8 | 0.609400 | inner-membrane translocator | |
| RPD_3401 | 1 | 9 | 1.465140 | twin-arginine translocation pathway signal | |
| RPD_3402 | 0 | 10 | 1.118668 | hypothetical protein | |
| RPD_3403 | -1 | 10 | 0.971486 | histidine triad (HIT) protein | |
| RPD_3404 | -1 | 9 | 0.621679 | plasmid stabilization protein | |
| RPD_3405 | -2 | 10 | 0.173589 | PilT protein-like protein | |
| RPD_3406 | 1 | 11 | 1.039356 | acriflavin resistance protein | |
| RPD_3407 | 0 | 11 | 0.415326 | hypothetical protein | |
| RPD_3408 | 0 | 10 | 0.602898 | secretion protein HlyD | |
| RPD_3409 | 0 | 10 | 0.282418 | redox-sensitive transcriptional activator SoxR | |
| RPD_3410 | 1 | 12 | 0.602143 | helix-turn-helix, HxlR type | |
| RPD_3411 | 2 | 11 | 0.829106 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3400 | BLACTAMASEA | 32 | 0.006 | Beta-lactamase class A signature. | |
>BLACTAMASEA#Beta-lactamase class A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3405 | TCRTETB | 106 | 7e-27 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3406 | RTXTOXIND | 119 | 8e-32 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3407 | HTHTETR | 68 | 3e-16 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3411 | IGASERPTASE | 33 | 0.009 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 61 | RPD_3543 | RPD_3548 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3543 | -1 | 20 | -3.466947 | cold-shock protein, DNA-binding | |
| RPD_3544 | -2 | 15 | -2.711764 | hypothetical protein | |
| RPD_3545 | 0 | 14 | -3.752637 | hypothetical protein | |
| RPD_3546 | -1 | 12 | -2.462595 | major facilitator transporter | |
| RPD_3547 | -1 | 12 | -0.980464 | threonyl-tRNA synthetase | |
| RPD_3548 | -1 | 16 | 0.758522 | nitroreductase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3543 | SACTRNSFRASE | 31 | 0.001 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3545 | HTHFIS | 74 | 2e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3546 | HTHTETR | 28 | 0.039 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3548 | DHBDHDRGNASE | 131 | 2e-39 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 62 | RPD_3609 | RPD_3614 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3609 | -1 | 13 | 0.611938 | L-carnitine dehydratase/bile acid-inducible | |
| RPD_3610 | -1 | 10 | 0.192151 | hypothetical protein | |
| RPD_3611 | 0 | 10 | 0.457220 | hypothetical protein | |
| RPD_3612 | 0 | 9 | 0.861227 | AMP-dependent synthetase and ligase | |
| RPD_3613 | -1 | 10 | 0.972322 | acetyl-CoA acetyltransferase | |
| RPD_3614 | 0 | 10 | 0.626602 | NAD-dependent epimerase/dehydratase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3609 | DHBDHDRGNASE | 80 | 4e-20 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3610 | HTHTETR | 56 | 8e-12 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3613 | IGASERPTASE | 47 | 5e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3614 | OMPADOMAIN | 31 | 0.002 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| 63 | RPD_3640 | RPD_3647 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3640 | 2 | 20 | -1.720069 | hypothetical protein | |
| RPD_3641 | 2 | 16 | -1.542896 | hypothetical protein | |
| RPD_3642 | 2 | 17 | -1.817668 | heavy metal efflux pump CzcA | |
| RPD_3643 | 2 | 17 | -1.261517 | hypothetical protein | |
| RPD_3644 | 2 | 16 | -2.016171 | secretion protein HlyD | |
| RPD_3645 | 2 | 16 | -2.457589 | hypothetical protein | |
| RPD_3646 | 2 | 16 | -2.609737 | outer membrane efflux protein | |
| RPD_3647 | 2 | 21 | -3.097719 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3640 | ACRIFLAVINRP | 62 | 5e-15 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3641 | ACRIFLAVINRP | 54 | 6e-12 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3646 | ACRIFLAVINRP | 762 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3647 | RTXTOXIND | 40 | 8e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 64 | RPD_3672 | RPD_3678 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3672 | 0 | 9 | -1.879722 | hypothetical protein | |
| RPD_3674 | 0 | 10 | -1.221791 | AsmA | |
| RPD_3675 | 1 | 8 | -0.248701 | hypothetical protein | |
| RPD_3676 | 0 | 7 | -0.014835 | FAD linked oxidase-like protein | |
| RPD_3677 | -1 | 9 | 0.480770 | thioesterase-like protein | |
| RPD_3678 | -1 | 10 | 1.252907 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3672 | HTHFIS | 83 | 1e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3675 | HTHFIS | 59 | 1e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3676 | HTHFIS | 84 | 2e-22 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3678 | HTHFIS | 70 | 2e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 65 | RPD_3842 | RPD_3849 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_3842 | -1 | 12 | 0.100953 | hypothetical protein | |
| RPD_3843 | -2 | 11 | 0.038690 | inner-membrane translocator | |
| RPD_3844 | 0 | 8 | -0.279915 | hypothetical protein | |
| RPD_3845 | 0 | 9 | -0.326058 | twin-arginine translocation pathway signal | |
| RPD_3846 | -1 | 8 | 0.660641 | hypothetical protein | |
| RPD_3847 | 1 | 9 | 0.513998 | DEAD/DEAH box helicase-like protein | |
| RPD_3848 | 1 | 9 | 0.474556 | translation initiation factor IF-1 | |
| RPD_3849 | 2 | 9 | 0.221439 | cold-shock DNA-binding domain-containing |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3842 | HTHFIS | 416 | e-144 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3843 | FLGMOTORFLIN | 91 | 7e-27 | Flagellar motor switch protein FliN signature. | |
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3844 | FLGFLIH | 34 | 2e-04 | Flagellar assembly protein FliH signature. | |
>FLGFLIH#Flagellar assembly protein FliH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3845 | FLGMOTORFLIG | 310 | e-106 | Flagellar motor switch protein FliG signature. | |
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3846 | FLGMRINGFLIF | 340 | e-113 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_3849 | IGASERPTASE | 46 | 5e-07 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 66 | RPD_4072 | RPD_4076 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4072 | -1 | 9 | -0.975325 | isovaleryl-CoA dehydrogenase | |
| RPD_4073 | -1 | 9 | -0.743177 | cytochrome P450 | |
| RPD_4074 | -2 | 10 | -0.480246 | acyl-CoA dehydrogenase-like protein | |
| RPD_4075 | -1 | 9 | -0.865568 | L-carnitine dehydratase/bile acid-inducible | |
| RPD_4076 | -1 | 8 | -0.558391 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4072 | HTHTETR | 62 | 5e-14 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4073 | ACRIFLAVINRP | 470 | e-151 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4074 | RTXTOXIND | 36 | 3e-04 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4076 | HTHFIS | 81 | 4e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 67 | RPD_4138 | RPD_4148 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4138 | -1 | 8 | 2.245214 | antenna complex subunit alpha/beta | |
| RPD_4139 | -1 | 10 | 1.826158 | antenna complex subunit alpha/beta | |
| RPD_4140 | 0 | 10 | 1.201168 | hypothetical protein | |
| RPD_4141 | -2 | 10 | -0.392177 | chlorophyllide reductase subunit Z | |
| RPD_4142 | -1 | 10 | -0.511964 | chlorophyllide reductase subunit Y | |
| RPD_4143 | 0 | 10 | -1.218802 | chlorophyllide reductase iron protein subunit X | |
| RPD_4144 | -1 | 10 | -1.877638 | chlorophyll synthesis pathway protein BchC | |
| RPD_4145 | -1 | 11 | -2.123218 | O-methyltransferase family protein | |
| RPD_4146 | -1 | 11 | -1.743166 | polyprenyl synthetase | |
| RPD_4147 | 1 | 14 | -0.275081 | FAD dependent oxidoreductase | |
| RPD_4148 | 4 | 14 | -0.667179 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4138 | HTHTETR | 62 | 4e-14 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4141 | HTHFIS | 35 | 0.001 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4143 | PERTACTIN | 31 | 0.009 | Pertactin signature. | |
>PERTACTIN#Pertactin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4144 | OMPADOMAIN | 117 | 1e-34 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4148 | IGASERPTASE | 42 | 2e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 68 | RPD_4223 | RPD_4230 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4223 | 0 | 11 | 1.505997 | phosphonate metabolism | |
| RPD_4224 | -1 | 12 | 1.594699 | phosphonate metabolism PhnJ | |
| RPD_4225 | -1 | 11 | 1.426690 | phosphonate C-P lyase system protein PhnK | |
| RPD_4226 | -2 | 9 | 1.282677 | phosphonate C-P lyase system, PhnL | |
| RPD_4227 | -1 | 11 | 1.807117 | phosphonate metabolism PhnM | |
| RPD_4228 | -1 | 9 | 1.564784 | phosphonate metabolism, 1,5-bisphosphokinase | |
| RPD_4229 | 0 | 10 | 1.444997 | pyridoxamine 5'-phosphate oxidase-like | |
| RPD_4230 | -1 | 12 | 1.356909 | Ferritin and Dps |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4223 | DHBDHDRGNASE | 118 | 4e-34 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4227 | TCRTETA | 33 | 0.002 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4228 | PF04335 | 29 | 0.042 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4230 | PF05272 | 29 | 0.040 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| 69 | RPD_4374 | RPD_4380 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| RPD_4374 | -1 | 11 | 0.240413 | flagellar hook-length control protein | |
| RPD_4375 | -1 | 12 | 0.097363 | flagellar hook capping protein | |
| RPD_4376 | 0 | 11 | 0.133055 | lytic murein transglycosylase | |
| RPD_4377 | 0 | 10 | -0.490892 | hypothetical protein | |
| RPD_4378 | -1 | 9 | -0.146125 | hypothetical protein | |
| RPD_4379 | -2 | 12 | 0.129307 | hypothetical protein | |
| RPD_4380 | -3 | 11 | -0.134472 | peptidase C56, PfpI |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4374 | PF06580 | 39 | 3e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4375 | PF06580 | 38 | 5e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4376 | HTHFIS | 87 | 1e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| RPD_4380 | RTXTOXIND | 26 | 0.006 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||