PredictBias

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 29.8 bits (67), Expect = 2e-04

		 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

		

		Query: 1  MKKWFLMSVLGVFAFLIILSGCVSAPGTGGALNKVLKVET 40

		          MKK   + +L      + L+ C S   +    +  L V  

		Sbjct: 1  MKKCRFLVLL--LLAFVGLAACSSQKSSTETGSSKLNVVA 38

		

		

		>PF08280#M protein trans-acting positive regulator

		          Length = 530

		

		 Score = 24.0 bits (52), Expect = 0.020

		 Identities = 6/27 (22%), Positives = 12/27 (44%)

		

		Query: 13  FIVKNPGDVSVSEIAEKFNMSVSNAYK 39

		            I        +++ A    +S S+AY+

		Sbjct: 128 LIKNGSHSRPLTDFARSHFLSNSSAYR 154

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		          signature.

		          Length = 261

		

		 Score = 32.7 bits (74), Expect = 2e-05

		 Identities = 15/31 (48%), Positives = 23/31 (74%)

		

		Query: 13 KVALVTGGGQGIGKAIAQALAAAGAAVLIMD 43

		          K+A +TG  QGIG+A+A+ LA+ GA +  +D

		Sbjct: 9  KIAFITGAAQGIGEAVARTLASQGAHIAAVD 39

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 23.0 bits (49), Expect = 0.046

		 Identities = 10/41 (24%), Positives = 17/41 (41%)

		

		Query: 4  ATLKDIAEYFGVSISTVSRALSGKPGVSSELREKILEKARE 44

		           +L +IA+  GV+   +      K  + SE+ E       E

		Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		          signature.

		          Length = 261

		

		 Score = 36.6 bits (84), Expect = 7e-07

		 Identities = 17/38 (44%), Positives = 23/38 (60%)

		

		Query: 4  QGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEK 41

		          +GK+  ITGA  GIG+  A   A +GA +A  D + EK

		Sbjct: 7  EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEK 44

		

		

		>ARGDEIMINASE#Bacterial arginine deiminase signature.

		          Length = 409

		

		 Score = 24.4 bits (53), Expect = 0.014

		 Identities = 9/20 (45%), Positives = 13/20 (65%)

		

		Query: 25  VTAFDRDEETMKALEENGIE 44

		           + A+ R+  T K  EENGI+

		Sbjct: 362 IIAYSRNHVTNKLFEENGIK 381

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 23.3 bits (50), Expect = 0.039

		 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

		

		Query: 6  IRVLVVDDSAFMRMVLKDIIDSQP-DMKVVGFAKDGLEAV 44

		            +LV DD A +R VL   +     D+++   A      +

		Sbjct: 4  ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI 43

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 23.6 bits (51), Expect = 0.033

		 Identities = 8/41 (19%), Positives = 21/41 (51%)

		

		Query: 2   LNEMEKTVLQMIMAGSDISRVDISRALGISKPVVSKAVNRL 42

		           L EME  ++   +  +  +++  +  LG+++  + K +  L

		Sbjct: 433 LAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		          signature.

		          Length = 347

		

		 Score = 60.9 bits (148), Expect = 2e-15

		 Identities = 23/43 (53%), Positives = 31/43 (72%)

		

		Query: 1  MLRKDIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEILK 43

		          M   D+ IDLGTANTL++++G+GIV+NEPSV+AI        K

		Sbjct: 8  MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPK 50

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 40.9 bits (96), Expect = 2e-08

		 Identities = 14/30 (46%), Positives = 21/30 (70%)

		

		Query: 15 RVLVTGGAGAVGSNLVRRLLDLGAFVIVID 44

		          + LVTG AG +G ++ +RLL+ G  V+ ID

		Sbjct: 2  KYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31

		

		

		>FLGFLGJ#Flagellar protein FlgJ signature.

		          Length = 313

		

		 Score = 40.9 bits (95), Expect = 2e-08

		 Identities = 15/40 (37%), Positives = 25/40 (62%)

		

		Query: 5   FLERFSESAFLLERLTGIDGKILLAQSALETGWGRHTVGN 44

		           FL + S  A L  + +G+   ++LAQ+ALE+GWG+  +  

		Sbjct: 152 FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRR 191

		

		

		>SSPAKPROTEIN#Invasion protein B family signature.

		          Length = 133

		

		 Score = 26.1 bits (57), Expect = 0.004

		 Identities = 10/28 (35%), Positives = 13/28 (46%)

		

		Query: 7  IVVSALFLSGCMPEIYTHASTPSTIIAD 34

		          +V  +LF  GC P I T   + S I   

		Sbjct: 9  LVRDSLFTIGCPPSIITDLDSHSAITIS 36

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 25.7 bits (56), Expect = 0.004

		 Identities = 10/38 (26%), Positives = 20/38 (52%)

		

		Query: 6  TINDVAKLAGVSISTVSRYLKDPSQVSEKLGERIREAI 43

		          ++ ++AK AGV+   +  + KD S +  ++ E     I

		Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70

		

		

		>OMADHESIN#Yersinia outer membrane adhesin signature.

		          Length = 455

		

		 Score = 26.8 bits (58), Expect = 0.002

		 Identities = 11/33 (33%), Positives = 21/33 (63%)

		

		Query: 10  GNEVLRREITRRELHVKENESTPVAEMKKQQEE 42

		           G+E L R++T      K+ ++  VA++KK+ E+

		Sbjct: 188 GHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEK 220

		

		

		>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature.

		          Length = 393

		

		 Score = 26.5 bits (58), Expect = 0.003

		 Identities = 14/35 (40%), Positives = 19/35 (54%)

		

		Query: 1  MKKVLVFVFLALIAVSAVMAQMLPPGIPREKTLIL 35

		          MKK+L  V +     SA   Q LP G P E +L++

		Sbjct: 1  MKKLLKSVLVFAALSSASSLQALPVGNPAEPSLMI 35

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 28.8 bits (64), Expect = 5e-04

		 Identities = 8/30 (26%), Positives = 16/30 (53%)

		

		Query: 6  VTIRDIAEKAGVSINTVSRALNNKPDISEE 35

		           ++ +IA+ AGV+   +     +K D+  E

		Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 22.9 bits (49), Expect = 0.047

		 Identities = 8/44 (18%), Positives = 16/44 (36%)

		

		Query: 1  MISLLVAVPLLAAFVSLFWKKASDVLFSLVALFNVIVVLSKWFP 44

		          ++ L++     +      W K +     L  L   +V+   WF 

		Sbjct: 50 LMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFV 93

		

		

		>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.

		          Length = 428

		

		 Score = 25.7 bits (56), Expect = 0.005

		 Identities = 8/30 (26%), Positives = 12/30 (40%)

		

		Query: 12  SFVSLIGTRIYQVALAWWLYSKTGSSEYVG 41

		           S +  I   +Y+  L   L  + G   YV 

		Sbjct: 310 SVLKHIKQAVYETLLDLILEKEEGYKPYVV 339

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 23.3 bits (50), Expect = 0.034

		 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

		

		Query: 13 IEDLSVEEQMFLYEKTRELKQRWYSGEDVSDF 44

		          +E LS EE   L  KT E + R   GE + + 

		Sbjct: 35 MEKLSDEE---LKGKTAEFRARLEKGEVLENL 63

		

		

		>FLGPRINGFLGI#Flagellar P-ring protein signature.

		          Length = 373

		

		 Score = 32.2 bits (73), Expect = 2e-05

		 Identities = 15/38 (39%), Positives = 21/38 (55%)

		

		Query: 7  LAVLLVIVLTITFSFSVTTRIKDIAFFRGARDNQLFGI 44

		          L    +  L+   + + T+RIKDIA  +  RDNQL G 

		Sbjct: 11 LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGY 48

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 36.9 bits (85), Expect = 6e-07

		 Identities = 10/35 (28%), Positives = 22/35 (62%)

		

		Query: 4  SLYSAATGMSAQQFKLDTIANNLANVDTTGYKKVR 38

		           + +A +G++A Q  L+T +NN+++ +  GY +  

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 29.2 bits (65), Expect = 3e-04

		 Identities = 10/35 (28%), Positives = 19/35 (54%)

		

		Query: 4  GIYNAAMGMLVDMAKLDRIANDLANVDTAGYKQDR 38

		           I NA  G+    A L+  +N++++ + AGY +  

		Sbjct: 3  LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		          signature.

		          Length = 347

		

		 Score = 53.2 bits (128), Expect = 8e-13

		 Identities = 21/39 (53%), Positives = 29/39 (74%)

		

		Query: 1  MPRGDIGIDLGTASIIVYKRGEGIVLHEPSVVAISEKTG 39

		          M   D+ IDLGTA+ ++Y +G+GIVL+EPSVVAI +   

		Sbjct: 8  MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA 46