>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.025 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 36.6 bits (84), Expect = 2e-04 Identities = 20/173 (11%), Positives = 54/173 (31%), Gaps = 1/173 (0%) Query: 43 NYAETKKDKDSKDTDSNKDKGNSGGTLTPQQQAQTTASSGTPSPSGSGVASQLVKDTTTV 102 +Y D+K + K ++ ++G + + + S T+ V Sbjct: 279 DYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVV 338 Query: 103 NNLKSVSVSGMNTTLSGVETMSQQTATISNLLSGNPNLGSVISNAQGLNSAFSALESAQN 162 N + N + + + + ++ N + + + A + + Sbjct: 339 NGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKT 398 Query: 163 TLKGYLNSSSATIGQLTNGSNAVVGALDKAINQVDTALADLNATDTQKTQAVT 215 + + + ++D A+++VD + L A + A+T Sbjct: 399 ASGVSTLINEDAAAAKK-STANPLASIDSALSKVDAVRSSLGAIQNRFDSAIT 450
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 222 bits (566), Expect = 2e-77 Identities = 57/145 (39%), Positives = 90/145 (62%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAK---EVPAS 120 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAQDLAHAFLD 145 NE QCG AA H+L+ A+ +A L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 1e-06 Identities = 52/271 (19%), Positives = 101/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + +++A G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLK-----NRSLRKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANISILTLKSIACFLPIFFHQI 287 +A +LG + A + + L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 59.3 bits (143), Expect = 2e-11 Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 21/211 (9%) Query: 165 LNDQEEKEEIKEEEKEEKEEKEEIKETPK--EEEKPKEETQEGEALKDEEVSKELETQGE 222 + K+E K EK E++ E + + +E K + + S+ ETQ Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 223 IKEETQEEQTKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQ------------ELVK 270 +ET +++E K ET++ +E + +Q SP ++ E +Q +K Sbjct: 1099 ETKETA--TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 271 EIQENSNGQED----KKETQEKTETPQKKETQENAEIPQELETPQEKTQEKTQEDHYESI 326 E Q +N D KET E P + T N +E P+ T TQ Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT-GNSVVENPENTTPATTQPTVNSES 1215 Query: 327 EDIPEPVMAKAMGEELPFLNEAVAKTPNNEN 357 + P+ +++ + A + + Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Score = 52.8 bits (126), Expect = 2e-09 Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 21/236 (8%) Query: 163 PTLNDQEEKEEIKEEEKEEKEEKEEIKETPKEEEKPKEETQEGEALKDEEVSKELETQGE 222 T N+ + EE +E P P E T+ E SK+ E Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE-----TVAENSKQESKTVE 1052 Query: 223 IKEETQEEQTKEQ-EPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQED 281 E+ E T + E KE +K Q ++ E KE ++ Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 282 KKETQEKTETPQK------KETQENAEIPQELETPQEKTQEKTQEDHYESIEDIPEPVMA 335 K ET++ E P+ K+ Q PQ + + D +I++ Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQ--------AEPARENDPTVNIKEPQSQTNT 1164 Query: 336 KAMGEELPFLNEAVAKTPNNENDTETPKESVIKTPQETPQESVETPQESVETPKES 391 A E+ + + P E+ T SV++ P+ T + + P + E+ + Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ-PTVNSESSNKP 1219 Score = 50.8 bits (121), Expect = 9e-09 Identities = 49/266 (18%), Positives = 92/266 (34%), Gaps = 27/266 (10%) Query: 176 EEEKEEKEEKEEIKETP--KEEEKPKEETQEGEALKDEEVSKELETQGEIKEETQEEQTK 233 E EK + TP + + P + E + +E + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP--VPPPAPATPSETTETVA 1041 Query: 234 EQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQEKTETPQ 293 E + +T E E+ +T EA + Q N Q ++T+T + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS--GSETKETQTTE 1099 Query: 294 KKETQENAEIPQELETPQEKTQE---KTQEDHYESIEDIP-------EPVMAKAMGEELP 343 KET + +EK + KTQE + + P A+ E P Sbjct: 1100 TKETATVEK--------EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 344 FLNEAVAKTPNN-ENDTETPKESVIKTPQE--TPQESVETPQESVETPKESDKTSSPLEL 400 +N ++ N DTE P + ++ T +V T VE P+ + ++ + Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 401 RLNLQDLLKSLNQESLKNLLENKTLS 426 + K+ ++ S++++ N + Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 40.0 bits (93), Expect = 2e-05 Identities = 25/228 (10%), Positives = 74/228 (32%), Gaps = 22/228 (9%) Query: 111 QKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALAKEEPNNEEQLLPTLNDQEE 170 + + E N+ + E E KE E+ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA-----------TVEK 1108 Query: 171 KEEIKEEEKEEKEEKEEIKETPKEEEKPKEETQEGEALKDEEVSKELETQGEIKEETQEE 230 +E+ K E ++ +E + + ++E+ + + E ++ + + ++ + Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE----PQSQTNT 1164 Query: 231 QTKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQEKTE 290 ++P KE + +++ E T + ++ E + + E+ K + Sbjct: 1165 TADTEQPAKETSSNVEQPVTEST----TVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 291 TPQKKETQENAEIPQELETPQEKTQEKTQEDHYESIEDIPEPVMAKAM 338 ++ + +P +E + +++ + V++ A Sbjct: 1221 NRHRRSVR---SVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDAR 1265
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (483), Expect = 8e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDA 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.011 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 KGETILKALERIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 27.8 bits (62), Expect = 0.041 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 148 LKLASSLKSKIVY------GASVSQTHQFVATKNAQIGFGALSLMDKKDKNLS 194 L+ +L S+I+ G V ++ A +IG A D ++ Sbjct: 229 LRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAP 281
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.002 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 27 SDEDLAKMAGIVAP--QDIVDYKKELRMRMKKMPEDKRE--AFHKQLHEYAVKNTDNMTV 82 ++ED+A+ A Q K EL K + + E F++ H+ + Sbjct: 333 ANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM 392 Query: 83 ADFEAHQKAVKEALKKSNM----KDMDDDDLGLRSCKHGKMHKHHKHHKHDGQNKAKEHG 138 A +A + K++ K+ D D L S + K K K +N + Sbjct: 393 AGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDK--KRSAENNLNDEK 450 Query: 139 KEQGK--KDHDHDDH 151 + K KD+ HD H Sbjct: 451 NKPRKGFKDYGHDYH 465
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.006 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIAKKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.017 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 23/152 (15%) Query: 163 FLLLVLAQILLIGLILIIVLITLVETLTWLSLGFAVLPLALFPQTKGM-LFSYLKKLISL 221 + VL + + L+ V + + GF + A+ P K + K++ S+ Sbjct: 75 VVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSI 134 Query: 222 TFYQPCIMVVAFLNFSMIESITLKIPTKAEIINGFYNKGHIIDQMIENGSSQAVNNFQNA 281 + + F ++SI LK+ I+ KG+++ + Sbjct: 135 K---------SLVEF--LKSI-LKV-VLLSILIWIIIKGNLVTLLQLPTCG--------- 172 Query: 282 MGAYTGVLGFFIILILGSVICFFLIKRVPDFI 313 + T +LG + ++ F++ + D+ Sbjct: 173 IECITPLLGQILRQLMVICTVGFVVISIADYA 204
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 11/212 (5%) Query: 430 KQQEKALKNLDSATQSVGVNAIKEQNKANENAQQETKNSQAQETTSSQAYESVSQA--NT 487 + E + AT S + E +K + ++ KN Q T++Q E +A N Sbjct: 1019 RVDEAPVPPPAPATPSETTETVAENSK--QESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 488 QATTQANESIKPQTNNTATQQENAKESQAIE-QNRATQEPHAKEEPKKVSHPDEPWLDYN 546 +A TQ NE + + TQ KE+ +E + +A E +E KV+ P Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP---KQ 1133 Query: 547 PKNHAGLKERQENQEKTPSKGNDEPWIEYGKLMQEKAKAHYQAMVEKERAKQQAQQNAKN 606 ++ + + +E P+ EP + + A + ++ + N N Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 607 T---NSINTPNKEVEIIDYGYTQSAPAKSRKR 635 + N NT + + + P +R Sbjct: 1194 SVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.021 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 106 KASIAYIRD--------YEMRYVKARDEQGNLIPLKDKEGNLKHYSNG-EVIYENEKVPQ 156 + I ++ Y RY +++ ++ +G +H G V+ + + Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 157 R 157 Sbjct: 296 V 296
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.039 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.015 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 604 WFKDKELLKRANLPIDLEVERKRVEEPTQPTTEITTPPNQNKADLEPSNKGEYTENESSE 663 + K K+L+ A P +LE ++K +E+ + + + + D K E +N ++ Sbjct: 125 FLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQ----AQKAQKDKREKRKEERAKNRANL 180 Query: 664 SNNENNPTIPQKESENSNPTE-----SEKDHESPITLENANENIEQGNHNEIDEILKKPL 718 N N + PQ S N N +E E + + LE+ E + +I+E+ KK Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 719 SE 720 E Sbjct: 241 EE 242
>FLAGELLIN#Flagellin signature. Length = 507 Score = 25.8 bits (56), Expect = 0.030 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 6 TQENGLEPISNNENQKLKEAEMPLSNIQKAKELKNNANLIVRRTDELS-KAIN------K 58 + GL S N A +S Q + N N ++R ELS +A N Sbjct: 55 SNIKGLTQASRN-------ANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSD 107 Query: 59 RESLQREFDRRIKHLDNKIETLSNN 83 +S+Q E +R++ +D N Sbjct: 108 LKSIQDEIQQRLEEIDRVSNQTQFN 132
>cloacin#Cloacin signature. Length = 551 Score = 35.5 bits (81), Expect = 8e-04 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 3/92 (3%) Query: 133 NGKGFSGSGTSGMGYASGYGVTGNTSSNGSGVSSTSTNGIARSDGSSGANGSNGANGIDG 192 NG G SG+ N GSG G +G N G+ Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 193 TSGTSGYQGVGSNPFPPIAGSGSGSSGSSNSG 224 S + G FP ++ G+G S S Sbjct: 81 LSAVAAPVAFG---FPALSTPGAGGLAVSISA 109 Score = 35.1 bits (80), Expect = 0.001 Identities = 21/64 (32%), Positives = 25/64 (39%) Query: 178 SSGANGSNGANGIDGTSGTSGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGG 237 S+ N + G G+ G S G S P GSGSG SG+ G GG Sbjct: 15 STSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGG 74 Query: 238 MGGG 241 G G Sbjct: 75 SGTG 78 Score = 34.7 bits (79), Expect = 0.001 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query: 197 SGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYLPGLQNGSG 256 SG G G N +SG+ N G T GGG G G P+ G +GSG Sbjct: 2 SGGDGRGHN------TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW--GGGSGSG 53 Query: 257 ANGIDGTSGVNGANGTSGANGNNSTNGGAASA 288 + G+ NG + G+ + +A A Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.0 bits (72), Expect = 0.009 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 155 GNTSSNGSGVSSTSTNGIARSDGSSGANGSNGANGIDGTSGTSGYQGVGSNPFPPIAGSG 214 G+ + +G STS N + G +G GA+ G S + G GS G G Sbjct: 4 GDGRGHNTGAHSTSGN---INGGPTGLGVGGGASDGSGWSSENNPWGGGSG-SGIHWGGG 59 Query: 215 SGSSGSSNSGYTPFMSGGGGIGGMGGG 241 SG +G + GGG G G Sbjct: 60 SGHGNGGGNG-----NSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.010 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%) Query: 140 SGTSGMGYASGYGVTG---NTSSNGSGVSSTSTNGIARSDGSS---GANGSNGANGIDGT 193 SG G G+ +G T N G GV +++G S ++ G +GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 194 SGTSGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGG 241 G G G G GSG+ G+ ++ P G + G G Sbjct: 62 HGNGGGNGNS--------GGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Score = 31.6 bits (71), Expect = 0.011 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 188 NGIDGTSGTSGYQGVGSNPFPPIAGSGSGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPY 247 +G DG +G N G G G S SG++ + GG G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW----- 56 Query: 248 LPGLQNGSGANGIDGTSGVNGANGTSGANGNNST 281 G +G G G +G SG G SG GN S Sbjct: 57 --GGGSGHGNGGGNGNSG-----GGSGTGGNLSA 83
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 89.5 bits (222), Expect = 7e-23 Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 29/224 (12%) Query: 131 ESFKKDELDLSSVFEIQRKNTQMAYRLAIGGLIGVISLSVALDFLMPLKQIEPYFIDFAN 190 F++ ++ ++A+ +A + VA+ L PLK +EPY I Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 191 SDKHFAVVQ--KADTKVDYGEAFLRNLVGSYITARETINHIDDKIRLNETIREQSSEEVW 248 + ++ D + Y EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 249 KTLEQLVSGKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 303 + +I +N D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVYFTKESV 179 Query: 304 SEKRYRVSLIYHFKPLIQFDYSSMP-------KNPTGFIVDKYS 340 + S I++ P KNP G+ V+ Y Sbjct: 180 TGSN---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.3 bits (65), Expect = 3e-04 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 1 MKKMQYLAFILVAALLNACSDKFIEMKKS 29 MK ++ L + AALL ACS++ + S Sbjct: 9 MKNVKLLLMLGTAALLAACSNEADSLTTS 37
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1787 bits (4630), Expect = 0.0 Identities = 1048/1215 (86%), Positives = 1081/1215 (88%), Gaps = 69/1215 (5%) Query: 1 MTNETINQQPQAEAAFNPRQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFDG 60 MTNETI+QQPQ EAAFNP+QFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAF+G Sbjct: 1 MTNETIDQQPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFEG 60 Query: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDALIDVESSTKSFQKFGDQRYRIF 120 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKD LIDVESSTKSFQKFGDQRYRIF Sbjct: 61 ISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIF 120 Query: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPISDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 TSWVSHQNDPSKINTRSIRNFMENIIQPPI DDKEKAEFLKSAKQSFAGIIIGNQIRTDQ Sbjct: 121 TSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTDQ 180 Query: 181 KFMGVFDESLKERQEAEKNGGPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 KFMGVFDESLKERQEAEKNG PTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI Sbjct: 181 KFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDI 240 Query: 241 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS Sbjct: 241 ATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNALS 300 Query: 301 SVLMGSHNGIEPEKVSLLYGDNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 SVLMGSHNGIEPEKVSLLYG NGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV Sbjct: 301 SVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGLV 360 Query: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKIDFMEFLAQNNAKLDNLSEKEKEK 420 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKIDFMEFLAQNNAKLDNLSEKEKEK Sbjct: 361 IAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKEK 420 Query: 421 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKYSALITGFGNGDLSYTLKDYGKKADKA 480 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTK+SALIT FGNGDLSYTLKDYGKKADKA Sbjct: 421 FRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADKA 480 Query: 481 LDREAKITLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEAGFNKVAVFNL 540 LDRE +TLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLE GFNKVA+FNL Sbjct: 481 LDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFNL 540 Query: 541 PNLNNLAITNFIRRDLEDKLIAKGLSPQEANKIIKDFLSNNKELVGKVSNFNKAVAEAKN 600 P+LNNLAIT+F+RR+LEDKL KGLSPQEANK+IKDFLS+NKELVGK NFNKAVA+AKN Sbjct: 541 PDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAKN 600 Query: 601 TGNYDEVKKAQKDLEKSLKKRGHLEKDVAKNLESKSSNKNKMEAKSQANSQKDEIFALIN 660 TGNYDEVKKAQKDLEKSL+KR HLEK+V K LESKS NKNKMEAK+QANSQKDEIFALIN Sbjct: 601 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALIN 660 Query: 661 KEANREARAAAYTQNLKDIKRELSDKLENVNKNLKDFSKSFDEFKNGKNKDFSKAEETLK 720 KEANR+ARA AY QNLK IKRELSDKLENVNKNLKDF KSFDEFKNGKNKDFSKAEETLK Sbjct: 661 KEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETLK 720 Query: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKI 780 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK+ Sbjct: 721 ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKV 780 Query: 781 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNEDFNTGKKSEIYQSV 840 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNE N KKSEIYQSV Sbjct: 781 TDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQSV 840 Query: 841 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKELKAKLGNFNNNNN-GLKNEPIYAKVNKKK 899 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKEL AKLGNFNNNNN GLKNEPIYAKVNKKK Sbjct: 841 KNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKNEPIYAKVNKKK 900 Query: 900 AGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGNVGQAAGFPLKKHDKVDDLSKVGLSA 959 AGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLG VGQAAGFPLK+HDKVDDLSKVGLS Sbjct: 901 AGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAAGFPLKRHDKVDDLSKVGLSR 960 Query: 960 SPEPIYATIDDLGGPFPLKKHDKVDDLSKVGLSASPEPIYATIDDLGGPFPLKRHDKVDD 1019 + E K+D+L++ Sbjct: 961 NQELA----------------QKIDNLNQA------------------------------ 974 Query: 1020 LSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSAKHNPMNLWVESAKQV 1079 +S+ L Q ID L + ++ +SAK P +L Sbjct: 975 VSEAKAGFFGNLEQTIDKLKDSTK----------HNPMNLWVESAKKVPASL-------- 1016 Query: 1080 PASLSAKLDNYATNSHTRISSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVS 1139 SAKLDNYATNSH RI+SNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSV Sbjct: 1017 ----SAKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVP 1072 Query: 1140 LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAAKDIKSGFTQFLTNIFSTASYYCLAGENAE 1199 LSEYDKIGFNQKNMKDYSDSFKFSTKLNNA KD SGFTQFLTN FSTASYYCLA ENAE Sbjct: 1073 LSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAE 1132 Query: 1200 HGIKNANTKGGFQKS 1214 HGIKN NTKGGFQKS Sbjct: 1133 HGIKNVNTKGGFQKS 1147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.007 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 4e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMVLNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + L A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 5e-05 Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 676 KNAKTDEERKKCLKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARK 734 + ++ E + + P ++ + + ++KT + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 735 LLEEAKESLKAYKDCVSRARNKKEKKECEKLLTPE-AKKLLEEEAKESVKAYLDCVSQAK 793 + +EAK ++KA A++ E KE + T E A EE+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 794 NEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSKARTEAEKKECEKLLTPEAKKLLEQ 853 + K+E + + P+A+ E + S+ T A+ ++ K + ++ + + Sbjct: 1128 QVSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 854 QALDCLKNAKTE 865 N+ E Sbjct: 1186 STTVNTGNSVVE 1197 Score = 35.4 bits (81), Expect = 0.003 Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 9/242 (3%) Query: 714 QAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCVSRARNKKEKKECEKLLTPEAKKL 773 + E + E + P A E E++ S+ K E+ E + Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ---NRE 1067 Query: 774 LEEEAKESVKAYLDC--VSQAKNEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSKAR 831 + +EAK +VKA V+Q+ +E ++ + + +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 832 TEAEKKECEKLLTPEAKKLLEQQALDCLKNAK----TEADKKRCVKDLPKDLQKKVLAKE 887 + K+E + + P+A+ E +K + T AD ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 888 SLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQARNEKEKKECE 947 ++ V N + + + K + S+++ V A + Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Query: 948 KL 949 L Sbjct: 1248 AL 1249 Score = 34.7 bits (79), Expect = 0.005 Identities = 35/239 (14%), Positives = 82/239 (34%), Gaps = 10/239 (4%) Query: 499 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 556 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 557 ESLKAYKDCVSQARTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKNEAEKKE 616 E+ K E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 617 CEKLLTPEAKKKLEEAKKSVKAYL--DCASQARTEAEKKECEKLLTPEARKLLEQQALDC 674 ++ + + + E A+++ + SQ T A+ ++ K + + + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 675 LKNA------KTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL 727 N+ T + + + K + SV++ V A T + + L Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 33.1 bits (75), Expect = 0.014 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 33/218 (15%) Query: 755 NKKEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKNEAEKKECEKLLTPEAKKKLE 814 N +E ++ P E E+V S+ + E+ E T + ++ + Sbjct: 1013 NNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREVAK 1070 Query: 815 EAKKSVKAYLDCVSKARTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKD 874 EAK +VKA A++ +E KE + T E + +++ AK E +K Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKT----- 1119 Query: 875 LPKDLQKKVLAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCV 934 ++ K+E + + P+A+ E + K+ Sbjct: 1120 ------------------QEVPKVTSQVSPKQEQSETVQPQAEPAREN--DPTVNIKEPQ 1159 Query: 935 SQARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTE 972 SQ + ++ K + ++ + + N+ E Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Score = 32.7 bits (74), Expect = 0.018 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 2/158 (1%) Query: 530 KNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQARTEAEKKECEKLLTPEAKKL 589 + ++ E + + P + E+ + + Q EK E + T + Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 590 LEEEAKESVKAYLDC--VSQAKNEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCASQAR 647 + +EAK +VKA V+Q+ +E ++ + + +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 648 TEAEKKECEKLLTPEARKLLEQQALDCLKNAKTDEERK 685 + K+E + + P+A E +K ++ Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.011 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 8e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKEEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKC-----AQKTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.016 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 43 KKNEQVIDLNLEDLPSDEKKDEKIAEKA-EEKKDEKVVEKNATDKEGDFIDPKEQEES-L 100 + +E + PS + E +AE + +E K + E++AT+ + ++ +S + Sbjct: 1019 RVDEAPVPPPAPATPS--ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 101 EDIFSSLNDFQ-----EKTDKNAQKEEQKNEQEEEQRRLKEQQR 139 + + Q ++T KE E+EE+ + E+ + Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 4e-05 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 4/151 (2%) Query: 331 NEQSENLESALFFKQISQYAKGLRLKILSAPISKKDLARLEKLENTIKQEEERLKGSKGL 390 E + N +A K + A+ L+ A + K LE N + ++K + Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA----LEGAMNFSTADSAKIKTLEAE 219 Query: 391 NVKEQENALKLKESIKAKQNYIETLKNAINQKEQAKNPIEQQKQNLERQKNEKEREKYHQ 450 L+++++ N+ I E K +E ++ LE+ Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 451 ESAKQDREREKYHQESAKQDREREKHHLNNE 481 + + E EK E+ K D E + LN Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Score = 32.0 bits (72), Expect = 0.006 Identities = 43/320 (13%), Positives = 82/320 (25%), Gaps = 14/320 (4%) Query: 165 ENAIKQDEEKLNALELQTNAKKEITESLKKLEELKQKLKKLKKQSKWKKEFNFLTDNPPN 224 + K E K + ++ + LK +L ++ KE D + Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 225 IQAKQESALNRSSSENALMNFFLTAPYAILPKGFIFEYHNPGKETYNALNAPNNMDGINN 284 +A + L ++ L A Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTAD------------SAKIKTLEAEKA-ALAAR 156 Query: 285 RFKTNALNQVLDNSYQKFLAGNDSYNALKGMEQVKALKFYDLVLNFNEQSENLESALFFK 344 + + N A + A K + + + + S + + Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 345 QISQYAKGLRLKILSAPISKKDLARLEKLENTIKQEEERLKGSKGLNVKEQENALKLKES 404 + + A R L + IK E + + ++ Sbjct: 217 EAEKAALAARKADLEKALEGAM-NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 275 Query: 405 IKAKQNYIETLKNAINQKEQAKNPIEQQKQNLERQKNEKEREKYHQESAKQDREREKYHQ 464 A I+TL+ E K +E Q Q L + R+ AK+ E E Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335 Query: 465 ESAKQDREREKHHLNNESNA 484 E + E + L + +A Sbjct: 336 EEQNKISEASRQSLRRDLDA 355 Score = 31.6 bits (71), Expect = 0.010 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 10/120 (8%) Query: 95 QNRINSLNHEITNIQNRINSLNHEITNIQNRINSLNHEISNLNNQTDQPNQALDRLNQEI 154 Q R + E ++ + + L+ +++ + L E+SN + + +++L +I Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI 115 Query: 155 AGINHEITANENAIKQDEEKLNALELQTNAKKEITESLKKLEELKQKLKKLKKQSKWKKE 214 + E A++ + +K LE K L K + E Sbjct: 116 QELEARKADLEKALEGAMNF----------STADSAKIKTLEAEKAALAARKADLEKALE 165
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.8 bits (66), Expect = 0.003 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 90 EQNKSAKESQRMAKEQFE-LEKQRYNAREQERLKNREAIDNI 130 E+ K A E ++ AKEQ + +K + R++ER KNR ++N+ Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL 183
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.013 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 491 LEAIQNANAMQQENAKANAPYNEQIQALQ----IQKLQAEIAELQAKASKYEQQGALSQ 545 + + ++ + Q Q Q + K +AE + A+ ++YE + + Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 26.6 bits (59), Expect = 0.008 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 49 VETIAEHLESIQVEHFEDKKIK 70 V T+AEHL+ + V H I Sbjct: 308 VNTLAEHLDMLMVCHHLSPTIP 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.0 bits (150), Expect = 2e-13 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFESLYNSVKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.6 bits (56), Expect = 0.050 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHVHNLVFETILGILEFERLKPQKISVDLDLFYTQLPN-----KSYLDYMEIQELIQKMM 61 ++ +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 224 bits (572), Expect = 2e-78 Identities = 63/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (330), Expect = 1e-39 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALVRSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYTQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.026 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 184 NNKPLKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQ--RKWYCLGICFKKSK 241 +N+ + + K +EE+ I D A+ + Q + ALK + R + K+SK Sbjct: 358 SNEQIINKEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK 412 Query: 242 LSLMPEEIFNDKQFTYFKF 260 +MP EIF+D FTYF F Sbjct: 413 -HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHQRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEN 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.2 bits (120), Expect = 3e-09 Identities = 51/346 (14%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 VLITGAYGMVGQNTALYFKKNKPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKV 102 D++ + + R + ++ + Y NL L + ++ + Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLISRMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.032 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKMEAFIQNEFIVFTIIDNGKEVENKSTLFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 365 bits (937), Expect = e-128 Identities = 118/345 (34%), Positives = 190/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAVALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LSDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKSITIAGVVKALQKIGVSAKGMVSILQALKKSGAINAEM 339 G + +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1427), Expect = 0.0 Identities = 177/582 (30%), Positives = 293/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIATGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI G A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKVLGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.1 bits (85), Expect = 3e-05 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 43 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 101 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 102 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 157 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 158 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNDHLQNASKI---K 214 A++VI + ++ + + + L + L + L+V+P D ++D L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 215 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 246 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 142 bits (360), Expect = 4e-38 Identities = 101/437 (23%), Positives = 176/437 (40%), Gaps = 85/437 (19%) Query: 9 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 125 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 176 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 177 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 204 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 205 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 244 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 245 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTFEPIEGFMPAKPFV 301 + GEI I+ L L SV +GDT P E IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 302 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 361 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 362 EREFGLNLIATAPTVVY 378 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 30.2 bits (68), Expect = 0.029 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASF 475 L T G + Sbjct: 593 LTFFTNGRSVC 603
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 1e-10 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTERIPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIHEMLRKTL 312 F++L IK +PV++ S+ ++ A A ++ K ++ E+ ++ + L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 313 S 313 + Sbjct: 120 A 120
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERRSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 269 bits (690), Expect = 5e-75 Identities = 103/394 (26%), Positives = 179/394 (45%), Gaps = 14/394 (3%) Query: 2798 NAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMEDVSSALGMLTKPSLKNNSTDVLQ 2857 + L L + + +A + T I + ++ L + K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2858 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRNKLKNN 2917 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2918 LWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITNSKS 2972 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + NS + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2973 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNAKVNY 3032 +N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ + +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3033 GYDFMFKNKSIILKPQIGLRYYYIGMTGLDGVMDNALYNQFKANADPSKKSVLTIDFALE 3092 GYDF F +++LKP +G+ Y ++G T + S + + +E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3093 NRHYFNTNSYFYAIGGVGRDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGGEVR 3152 R+Y+ SYFY GV ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3153 LFKSFYANAVVGARFGLDYKMINITGNIGMRLAF 3186 L K + N L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 33.1 bits (75), Expect = 0.022 Identities = 57/325 (17%), Positives = 94/325 (28%), Gaps = 68/325 (20%) Query: 204 NSVNLTNTDFGNQTPNGGFNAMGRKITYNGGIVNGGNFGFDNVDSNGTTTISGVTFNNNG 263 N+ +T N G NA + + G S G I+ G Sbjct: 277 NTSKVTGEVNFNHLTVGDHNA-AQAGIIASNKTHIGTLDLWQ--SAGLNIIA----PPEG 329 Query: 264 ALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFN------------NSILGSMPNGNA 311 K + + N N+N+ N ++ G Sbjct: 330 GYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGK 389 Query: 312 NTIGNAYILNAN-NITFNNLTFNGGWFVFDRSDAHVHF-QGTTTINNPTSP----FVNMT 365 NT+ N +N N + T F + AH+H +G ++N S N+T Sbjct: 390 NTVVNINRINTNADGTIRVGGFKASLT---TNAAHLHIGKGGINLSNQASGRSLLVENLT 446 Query: 366 GKVTINPNAIFNIQ--NYTPSIGSAYTLFSM----KNGNITYND---------------- 403 G +T++ N Q Y + SA F KNG T+N+ Sbjct: 447 GNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHT 506 Query: 404 --------VNNLWNIIRL----------KNTQATKDNSKNATSNNNTHTYYVTYNLGGTL 445 N +N + K A+ + + + N ++G Sbjct: 507 ANFKGIDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINELVVKTNGVSVGEYT 566 Query: 446 YNFRQIFSPDSIVLQSVYYGANNIY 470 + I S I + G +IY Sbjct: 567 HFSEDIGSQSRINTVRLETGTRSIY 591
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 902 bits (2332), Expect = 0.0 Identities = 286/1038 (27%), Positives = 518/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVMNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTSQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELKS 631 + + E FT + G +QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKI 691 + + + N+ + L G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGFHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 30.6 bits (69), Expect = 0.006 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.046 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.013 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.026 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 27 NQTTELCHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 81 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 82 EIIQSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 133 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 51.5 bits (123), Expect = 7e-10 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 91 PQKPPTPPTPPIPPIPP-KPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVE 141 P P P PIP P P+ KP+PKPKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 48.1 bits (114), Expect = 1e-08 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 84 PKPTLAGPQKPPTPPTPPIPPIPPKPIEKPKPEPKPKPKPKPEPK-KPNHKHKALKKVEK 142 P + P +P P P PIP P E P KPKPKPKP+PK + + + V+ Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 143 VEE 145 VE Sbjct: 117 VES 119 Score = 42.7 bits (100), Expect = 7e-07 Identities = 18/60 (30%), Positives = 25/60 (41%) Query: 91 PQKPPTPPTPPIPPIPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKIVE 150 +PP P P P E PK P KPKP+PK K +++ K + K + Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Score = 36.5 bits (84), Expect = 7e-05 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 40/220 (18%) Query: 98 PTPPIPPIPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKIVEEKKEEKK 157 P PP +P +P EP+P+P+P PEP K +V EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKP 96 Query: 158 IVEQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELY 217 + K +KV+++ + KPV E P N T Sbjct: 97 KPKPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAAT 142 Query: 218 GEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDL 277 + + + + RN + YP A L +G V+F + P+G + ++ Sbjct: 143 SKPVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNV 191 Query: 278 KIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 317 +I+ M + ++ + +P + ++ I + Sbjct: 192 QILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 33.8 bits (77), Expect = 7e-04 Identities = 16/57 (28%), Positives = 23/57 (40%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPIPPKPIEKPKPEPKPKPKPKPEPKKP 130 +P P+P P++ P P P PKP K + +PK KP +P Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121 Score = 31.5 bits (71), Expect = 0.003 Identities = 13/53 (24%), Positives = 17/53 (32%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPTPPIPPIPPKPIEKPKPEPKPKPKPKPEP 127 +P P + P P P P K E+PK + KP P Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.005 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 291 bits (746), Expect = e-104 Identities = 171/175 (97%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAVMIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AA++IVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGRRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASG+RS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.009 Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDTEIKNAL 214 + + D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.7 bits (72), Expect = 0.006 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 14/100 (14%) Query: 233 MLLEERALVSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADTIERLGIEKSLKSLEN 292 LLE + +G T T + + KV +IDT G E + +SL L Sbjct: 46 TLLERQ------RGITIQTGITSFQWENTKVNIIDTPG--HMDFLAE---VYRSLSVL-- 92 Query: 293 CDIILGVFDLSKPLEKEDFNLIDTLNRAKKPCIVVLNKND 332 D + + ++ + L L + P I +NK D Sbjct: 93 -DGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKID 131
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 0.003 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 17 IQASIALNCPIINLQYEVIQTPSKGFLNIGKKEAIILASVKESV-KAVKEESVKETHTKE 75 ++ S+ + INL ++VI+ +K + K+ I + ES K V EE K+ + +E Sbjct: 223 VRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQ-YLEE 281 Query: 76 IHQSAEEKKQKLETKT 91 HQ+A E + E KT Sbjct: 282 FHQTALEHPELSELKT 297
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 426 bits (1096), Expect = e-146 Identities = 165/570 (28%), Positives = 277/570 (48%), Gaps = 59/570 (10%) Query: 10 RLILAIALSFLFITLYSYFFQKPNKT--TTQTTKQETANNHTTTSPNTPNAFNATQTIPQ 67 R +L IAL F+ ++ + Q N QTT+ T + P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKEKGFLEHVGHLFSPKANPQPPL 125 ++L + I++ G + + K L + L F +A Sbjct: 65 TDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 126 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTIIK 183 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 184 TLTFYDDLHYDLQIAFKSSN--------NIIPSYVITNGYRPVADLDS-----YTFSGVL 230 T Y + + + N + + P D S +TF G Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAA 222 Query: 231 LENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTENPQGFEALIDSEIGT 287 D+K EK + D + + S +++ + +YF T N G + +G Sbjct: 223 YSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG- 280 Query: 288 KNPLGFISFKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKG 336 N + I +K++ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 -NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQP 339 Query: 337 VFALLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELTPKMKELQEKYKG 396 +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK++ ++E+ Sbjct: 340 LFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGD 399 Query: 397 EPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLS 456 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS Sbjct: 400 DKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLS 459 Query: 457 IMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAGLVLYWTT 516 DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+GLVLY+ Sbjct: 460 AQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIV 519 Query: 517 NNILSVLQQLIINKVLENKKRAHAQNKKES 546 +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 520 SNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 0.001 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFATIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217