PredictBias

		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.

		          Length = 336

		

		 Score = 31.6 bits (71), Expect = 0.003

		 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

		

		Query: 112 VTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLS 171

		           V+ LH+N K  +RI ++          L   A K +GLIS      +  AL  +KN  L 

		Sbjct: 82  VSGLHHNGKSELRIAEK---------LLKVTAEKSVGLISAEAKVDKSAALLSSKNRPLE 132

		

		Query: 172 GAATKTLAKQAKTQEAADRLVLKSNTLFDNTSKSI 206

		             + K L+   K  E+   +   +  + D+  K++

		Sbjct: 133 SVSGKKLSADLKAVESVSEVTDNATGISDDNIKAL 167

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 36.2 bits (83), Expect = 5e-04

		 Identities = 11/36 (30%), Positives = 22/36 (61%)

		

		Query: 418 TSLLIQGKSGAGKTTLLRTIAGLWSYAEGEINCPTH 453

		            S++++G  G GK+TL+ T+ GL  +++   +  T 

		Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  535 bits (1381), Expect = 0.0

		 Identities = 279/349 (79%), Positives = 314/349 (89%), Gaps = 2/349 (0%)

		

		Query: 2   LFKKIRGLFSNDLSIDLGTANTLIYVKRQGIVLDEPSVVAIRQDRVGTLKSIAAVGKEAK 61

		           + KK RG+FSNDLSIDLGTANTLIYVK QGIVL+EPSVVAIRQDR G+ KS+AAVG +AK

		Sbjct: 1   MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAK 60

		

		Query: 62  LMLGRTPKSIVAIRPMKDGVIADFFVTEKMLQYFIKQVHSGNFMRPSPRVLVCVPAGATQ 121

		            MLGRTP +I AIRPMKDGVIADFFVTEKMLQ+FIKQVHS +FMRPSPRVLVCVP GATQ

		Sbjct: 61  QMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQ 120

		

		Query: 122 VERRAIKESAIGAGAREVYLIEEPMAAAIGAKLPVSTAVGSMVIDIGGGTTEVAVISLNG 181

		           VERRAI+ESA GAGAREV+LIEEPMAAAIGA LPVS A GSMV+DIGGGTTEVAVISLNG

		Sbjct: 121 VERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180

		

		Query: 182 IVYSSSVRIGGDRFDEAIISYVRRTFGSVIGEPTAERIKQEIGSAYIQEGDEIKEMEVHG 241

		           +VYSSSVRIGGDRFDEAII+YVRR +GS+IGE TAERIK EIGSAY   GDE++E+EV G

		Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP--GDEVREIEVRG 238

		

		Query: 242 HNLAEGAPRSFTLTSRDVLEAIQQPLNGIVAAVRTALEECQPEHAADIFERGMVLTGGGA 301

		            NLAEG PR FTL S ++LEA+Q+PL GIV+AV  ALE+C PE A+DI ERGMVLTGGGA

		Sbjct: 239 RNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGA 298

		

		Query: 302 LLRNIDILLSKESGVPVIIAEDPLTCVARGGGEALEMIDMHGGDIFSDE 350

		           LLRN+D LL +E+G+PV++AEDPLTCVARGGG+ALEMIDMHGGD+FS+E

		Sbjct: 299 LLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 99.7 bits (248), Expect = 6e-27

		 Identities = 73/269 (27%), Positives = 122/269 (45%), Gaps = 21/269 (7%)

		

		Query: 13  LENKLIIITGAGGVLCSFLAKQLAYTKANIALLDLNFEAADKVAKEINQSGGKAKAYKTN 72

		           +E K+  ITGA   +   +A+ LA   A+IA +D N E  +KV   +      A+A+  +

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 73  VLELENIKEVRNQIETDFGTCDILINGAGGNNPKATTDNEFHQFDLNETTRTFFDLDKSG 132

		           V +   I E+  +IE + G  DIL+N AG   P        H             L    

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLI-----HS------------LSDEE 108

		

		Query: 133 IEFVFNLNYLGSLLPTQVFAKDMLGKQGANIINISSMNAFTPLTKIPAYSGAKAAISNFT 192

		            E  F++N  G    ++  +K M+ ++  +I+ + S  A  P T + AY+ +KAA   FT

		Sbjct: 109 WEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFT 168

		

		Query: 193 QWLAVYFSKVGIRCNAIAPGFLVSNQNLALLFDTEGKP---TDRANKILTNTPMGRFGES 249

		           + L +  ++  IRCN ++PG   ++   +L  D  G             T  P+ +  + 

		Sbjct: 169 KCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP 228

		

		Query: 250 EELLGALLFLIDENYSAFVNGVVLPVDGG 278

		            ++  A+LFL+    +  +    L VDGG

		Sbjct: 229 SDIADAVLFLVSGQ-AGHITMHNLCVDGG 256

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 26.8 bits (59), Expect = 0.041

		 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

		

		Query: 39  SVLRYFFDSGIAFSEEFSRICFVYMISFGIILVAKDKAHLTVDIIIPALPEQYRKIVLIV 98

		             L  F  + +  S +   + F   IS   +++    A+ +       L     +I+L V

		Sbjct: 23  YTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTH--AYRSFIKRQGWLKLNMGQIILRV 80

		

		Query: 99  ANICVLIAMIFIAYGALQLMSLTYTQQMPATGISSSFL------YLAAVISAVSYFFIVM 152

		              CV+I M++          L +    P        L       +   + ++ YF    

		Sbjct: 81  LPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHF 140

		

		Query: 153 FSMIK 157

		           F   K

		Sbjct: 141 FKNYK 145

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score = 33.6 bits (77), Expect = 0.001

		 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 22/105 (20%)

		

		Query: 190 AIPILVDILEQRLEYAKSLGIEH--IVNPHKEDD----IK-RIK----EITSGRMAEVVM 238

		            +  + D   +  +Y K L +    I   +KE +    IK + +    EI S  M E V 

		Sbjct: 196 VVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVK 255

		

		Query: 239 EASGANISIKNTLHYASFAGRIALTGWPKTETPLPTNLITFKELN 283

		            +S   + + N  H A     I +  + + ETPLP  L+TFK  +

		Sbjct: 256 RSS---VVVANPTHIA-----IGI-LYKRGETPLP--LVTFKYTD 289

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  142 bits (359), Expect = 1e-43

		 Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%)

		

		Query: 1   MQGKIALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGAEAISAYLGDKGK---GLVLN 57

		           ++GKIA +TG+ +GIG A+A  L+S+GA +     + +  E + + L  + +       +

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 58  VTDKESIETLLEQIKNDFGDIDILVNNAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSK 117

		           V D  +I+ +  +I+ + G IDILVN AG+ R  L+  + DEEW      N T V++ S+

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 118 AMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVV 177

		           ++ + MM +R G I+ +GS            Y ++KA  V F+K L  E+A   I  N+V

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 178 APGFIATDMTEVLTDEQKA------GILSN----VPAGRLGEAKDIAKAVAFLASDDAGY 227

		           +PG   TDM   L  ++        G L      +P  +L +  DIA AV FL S  AG+

		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

		

		Query: 228 ITGTTLHVNGGLYL 241

		           IT   L V+GG  L

		Sbjct: 246 ITMHNLCVDGGATL 259

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 34.4 bits (79), Expect = 7e-04

		 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

		

		Query: 16  PAQVIHSGNAVNQVAILGEEYVGMRPSMKVREGDVVKKGQVLFE 59

		             ++ HSG +     I       +   + V+EG+ V+KG VL +

		Sbjct: 87  NGKLTHSGRSKEIKPIEN----SIVKEIIVKEGESVRKGDVLLK 126

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score =  147 bits (371), Expect = 2e-45

		 Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 31/215 (14%)

		

		Query: 55  MVLEEPAPEPEDVQKEPEPEPEPGNVQKEPEPEKQEIVEDPTIKPEPKKIKEPEKEKPKP 114

		           MV       P+ VQ  PEP         EPEPE + I E P              E P  

		Sbjct: 49  MVTPADLEPPQAVQPPPEP-------VVEPEPEPEPIPEPPK-------------EAPVV 88

		

		Query: 115 KGKPKGKPKNKPKKEVKPQKKPINKELPKGDENIDSSANVNDKASTTSAANSNAQVAGSG 174

		             KPK KPK KPK   K Q++P  +++   +    S       A  TS+  + A      

		Sbjct: 89  IEKPKPKPKPKPKPVKKVQEQP-KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVT 147

		

		Query: 175 TDTSEIAAYRSAIRREIESHKRYPTRAKIMRKQGKVSVSFNVGADGSLSGAKVTKSSGDE 234

		           +  S   A             +YP RA+ +R +G+V V F+V  DG +   ++  +    

		Sbjct: 148 SVASGPRALSRN-------QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 200

		

		Query: 235 SLDKAALDAINVSRSVGTRPAGFPSSLSVQISFTL 269

		             ++   +A+   R    +P    S + V I F +

		Sbjct: 201 MFEREVKNAMRRWRYEPGKPG---SGIVVNILFKI 232

		

		

		>PF06291#Lambda prophage Bor protein

		          Length = 102

		

		 Score = 28.9 bits (64), Expect = 0.006

		 Identities = 11/41 (26%), Positives = 20/41 (48%)

		

		Query: 1  MKKIILNLVTAIILAGCSSNPETLKATNDSFQKSETSIPHF 41

		          MKK++ +   A+++ GC+    T+     +    ET   HF

		Sbjct: 6  MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHF 46

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  171 bits (436), Expect = 4e-53

		 Identities = 81/350 (23%), Positives = 151/350 (43%), Gaps = 37/350 (10%)

		

		Query: 1   MAILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLE--RVKQITGKEAKFYEGD 58

		           M  LVTG AG+IG H    LL  G +VV +DNL +    SL+  R++ +     +F++ D

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

		

		Query: 59  ILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWN 118

		           + DR  +  +FA      V       AV  S++ P  Y  +N+ G L +++  +   + +

		Sbjct: 61  LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

		

		Query: 119 FVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQILRDTAKAEPKFSMTILRYF 178

		            +++SS++VYG  + +P + D  V    + Y  +K   E ++  T         T LR+F

		Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPATGLRFF 179

		

		Query: 179 NPVGAHESGLIGEDPNGIPNNLLP-YISQVAIGKLAQLSVFGSDYDTHDGTGVRDYIHVV 237

		              G          P G P+  L  +   +  GK   + V+        G   RD+ ++ 

		Sbjct: 180 TVYG----------PWGRPDMALFKFTKAMLEGK--SIDVYN------YGKMKRDFTYID 221

		

		Query: 238 DLAVGHLKALQ---------------RHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNI 282

		           D+A   ++                     + A   +YN+G      ++D ++A E A  I

		Sbjct: 222 DIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI 281

		

		Query: 283 TIAYKLVERRSGDIATCYSDPSLAAKELGWVAERGLEKMMQDTWNWQKNN 332

		                ++  + GD+    +D     + +G+  E  ++  +++  NW ++ 

		Sbjct: 282 EAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331

		

		

		>PF08280#M protein trans-acting positive regulator

		          Length = 530

		

		 Score = 27.9 bits (62), Expect = 0.040

		 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

		

		Query: 107 KENIIKLLPSFSQNKSQSDIHSMEYDLNALY-FLQKHYGVNIYCISPES 154

		           +E +I LL +F    S++ I   EY +  L   L   +G+ +Y ++ + 

		Sbjct: 156 REALIPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQD 204

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  278 bits (712), Expect = 8e-93

		 Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 37/338 (10%)

		

		Query: 15  FIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQSLRRDKKFIAVNCAG 74

		            + +S AM+       R    D  L+I GE+G+GK+L+A+A H    RR+  F+A+N A 

		Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198

		

		Query: 75  LPDEDAESEMFGRKVG-----DSETIGFFEYANKGTVLLDGIAELSLSLQAKLLRFLTDG 129

		           +P +  ESE+FG + G      + + G FE A  GT+ LD I ++ +  Q +LLR L  G

		Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG 258

		

		Query: 130 SFRRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPALRDRMADIE 189

		            +  VG      ++VR++  +   L   + QG  R DL++RLNV+ + +P LRDR  DI 

		Sbjct: 259 EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIP 318

		

		Query: 190 PLAQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSLVQDNHLTIE 249

		            L + F+Q+  +E    K  FD++ L  ++ + W GNVREL N + R  +L   + +T E

		Sbjct: 319 DLVRHFVQQAEKEGLDVK-RFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITRE 377

		

		Query: 250 SLNLALPQSAVISLDEF-----ENKTLDEIIGFYEAQVLKLFYAEYPSTRKL-------- 296

		            +   L      S  E       + ++ + +     Q    F    P +           

		Sbjct: 378 IIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEME 437

		

		Query: 297 ------------------AQRLGVSHTAIANKLKQYGI 316

		                             A  LG++   +  K+++ G+

		Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 29.0 bits (65), Expect = 0.030

		 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

		

		Query: 127 GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR 186

		             I     L  E +++E V+ L    S +    +  S + +   +   + V + +   + 

		Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQL---EQIESEILSA--KEEYQLVTQLFKNEIL 301

		

		Query: 187 GQWQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRT 246

		            + +         LL  EL+  E      E+ + S  R               +PV+ + 

		Sbjct: 302 DKLRQTTD--NIGLLTLELAKNE------ERQQASVIR---------------APVSVKV 338

		

		Query: 247 HQIRVHTQ 254

		            Q++VHT+

		Sbjct: 339 QQLKVHTE 346

		

		

		>OUTRMMBRANEA#Outer membrane protein A signature.

		          Length = 346

		

		 Score = 33.0 bits (75), Expect = 4e-05

		 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

		

		Query: 4   GGDVKADQETSGSRSIKRIGFG--FIGGIGYDITPNITLDLGYRY-NDWGRLE--NVRFK 58

		           G   +AD +++        G    F GG+ Y ITP I   L Y++ N+ G       R  

		Sbjct: 120 GMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPD 179

		

		Query: 59  THEASFGVRYRF 70

		               S GV YRF

		Sbjct: 180 NGMLSLGVSYRF 191

		

		

		

		 Score = 28.0 bits (62), Expect = 0.002

		 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

		

		Query: 31  GYDITPNITLDLGY----RYNDWGRLENVRFKTHEASFGVRYRF 70

		           GY + P +  ++GY    R    G +EN  +K        +  +

		Sbjct: 63  GYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGY 106

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 36.2 bits (83), Expect = 0.001

		 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

		

		Query: 937  RDGVEKDKRALEIEEMQLREAKKDLTEELEILEAGLFARVRNLLISSGADAAQLDKLDRT 996

		            +  +EK                K L  E   L A   A +   L   GA         + 

		Sbjct: 192  QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK-ADLEKAL--EGAMNFSTADSAKI 248

		

		Query: 997  KWLEQTIAD-EEKQNQLEQLAEQYEELRKEFEHKLEVKRKKI 1037

		            K LE   A  E +Q +LE+  E           K++    + 

		Sbjct: 249  KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 1043 bits (2698), Expect = 0.0

		 Identities = 362/575 (62%), Positives = 436/575 (75%), Gaps = 8/575 (1%)

		

		Query: 1   MALTISRAQYVATYGPTVGDKVRLGDTNLWATIEQDLLTKGDECKFGGGKSVRDGMAQSG 60

		           M+  +SRA Y   +GPTVGDKVRL DT L+  +E+D  T G+E KFGGGK +RDGM QS 

		Sbjct: 1   MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQS- 59

		

		Query: 61  TATRDNPNVLDFVITNVMIIDAKLGIIKADIGIRDGRIVGIGQAGNPDTMDNVTPNMIIG 120

		             TR+    +D VITN +I+D   GI+KADIG++DGRI  IG+AGNPD    V   +I+G

		Sbjct: 60  QVTREG-GAVDTVITNALILDH-WGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVG 115

		

		Query: 121 ASTEVHNGAHLIATAGGIDTHIHFICPQQAQHAIESGVTTLIGGGTGPADGTHATTCTPG 180

		             TEV  G   I TAGG+D+HIHFICPQQ + A+ SG+T ++GGGTGPA GT ATTCTPG

		Sbjct: 116 PGTEVIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPG 175

		

		Query: 181 AWYMERMFQAAEALPVNVGFFGKGNCSTLDPLREQIEAGALGLKIHEDWGATPAVIDSAL 240

		            W++ RM +AA+A P+N+ F GKGN S    L E +  GA  LK+HEDWG TPA ID  L

		Sbjct: 176 PWHIARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCL 235

		

		Query: 241 KVADEMDIQVAIHTDTLNESGFLEDTMKAIDGRVIHTFHTEGAGGGHAPDIIKAAMYSNV 300

		            VADE D+QV IHTDTLNESGF+EDT+ AI GR IH +HTEGAGGGHAPDII+     NV

		Sbjct: 236 SVADEYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNV 295

		

		Query: 301 LPASTNPTRPFTKNTIDEHLDMLMVCHHLDKRVPEDVAFADSRIRPETIAAEDILHDMGV 360

		           +P+STNPTRP+T NT+ EHLDMLMVCHHL   +PED+AFA+SRIR ETIAAEDILHD+G 

		Sbjct: 296 IPSSTNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGA 355

		

		Query: 361 FSIMSSDSQAMGRIGEVVIRTWQTADKMKMQRGELGNE--GNDNFRIKRYIAKYTINPAI 418

		           FSI+SSDSQAMGR+GEV IRTWQTADKMK QRG L  E   NDNFR+KRYIAKYTINPAI

		Sbjct: 356 FSIISSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAI 415

		

		Query: 419 AHGIAEHIGSLEVGKIADIVLWKPMFFGVKPEVVIKKGFISYAKMGDPNASIPTPQPVFY 478

		           AHG++  IGSLEVGK AD+VLW P FFGVKP++V+  G I+ A MGDPNASIPTPQPV Y

		Sbjct: 416 AHGLSHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHY 475

		

		Query: 479 RPMYGAQGLATAQTAVFFVSQAAEKADIRAKFGLHKETIAVKGCR-NVGKKDLVHNDVTP 537

		           RPM+GA G +   ++V FVSQA+  A +  + G+ KE +AV+  R  +GK  ++HN +TP

		Sbjct: 476 RPMFGAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTP 535

		

		Query: 538 NITVDAERYEVRVDGELITCEPVDSVPLGQRYFLF 572

		           +I VD E YEVR DGEL+TCEP   +P+ QRYFLF

		Sbjct: 536 HIEVDPETYEVRADGELLTCEPATVLPMAQRYFLF 570

		

		

		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

		           family signature.

		          Length = 303

		

		 Score = 25.7 bits (56), Expect = 0.034

		 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

		

		Query: 36  TRAKVLAVGKGRILENGT--VQPLDVKV-------GDIVIFNDGYGVK 74

		           T A++ A+G+ ++L   T     +++         G++V  ND  GV+

		Sbjct: 244 TLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVE 291

		

		

		>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature.

		          Length = 136

		

		 Score =  169 bits (429), Expect = 1e-57

		 Identities = 92/132 (69%), Positives = 106/132 (80%), Gaps = 4/132 (3%)

		

		Query: 1   MNFIKEFREFAMRGNVVDMAVGVIIGSAFGKIVSSLVSDIFTPVLGILTGGIDFKDMKFV 60

		           M+ IKEFREFAMRGNVVD+AVGVIIG+AFGKIVSSLV+DI  P LG+L GGIDFK     

		Sbjct: 1   MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60

		

		Query: 61  LAQAQGDVPAVTLNYGLFIQNVIDFIIIAFAIFMMIKVINKV-RKPEEKKTAP---KAET 116

		           L  AQGD+PAV ++YG+FIQNV DF+I+AFAIFM IK+INK+ RK EE   AP   K E 

		Sbjct: 61  LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAPTKEEV 120

		

		Query: 117 LLTEIRDLLKNK 128

		           LLTEIRDLLK +

		Sbjct: 121 LLTEIRDLLKEQ 132

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 83.4 bits (206), Expect = 2e-19

		 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 25/194 (12%)

		

		Query: 13  VNVGTIGHVDHGKTTLT-------AAITTVLAKHYGGAARAFDQIDNAPEEKARGITINT 65

		           +N+G + HVD GKTTLT        AIT + +   G       + DN   E+ RGITI T

		Sbjct: 4   INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTT-----RTDNTLLERQRGITIQT 58

		

		Query: 66  SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 125

		               +         +D PGH D++  +    + +DGAIL+++A DG   QTR      R+

		Sbjct: 59  GITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 118

		

		Query: 126 VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ--------YDFPGDDTPIVRGSALQ 177

		           +G+P  I F+NK D    +  L  V  +++E LS           +P  +  +   +  +

		Sbjct: 119 MGIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYP--NMCVTNFTESE 173

		

		Query: 178 ALNGVAEWEEKILE 191

		             + V E  + +LE

		Sbjct: 174 QWDTVIEGNDDLLE 187

		

		

		>PF06776#Invasion associated locus B

		          Length = 214

		

		 Score = 26.4 bits (58), Expect = 0.015

		 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

		

		Query: 69  KVDDGYLLKADFTFC----CQAELVIFQMRIA 96

		           K+D+  + +A F  C    C AE+V+    + 

		Sbjct: 146 KLDNVDVGRAGFVRCLPNGCVAEVVMDDKLLG 177

		

		

		>PF07299#Fibronectin-binding protein (FBP)

		          Length = 219

		

		 Score = 32.9 bits (75), Expect = 0.002

		 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

		

		Query: 373 HLLEELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELTRG-KRVTEQAMREF---IDKLDI 428

		           H+ E L    + L + + TV  R   E    K+       + VT Q +++      KL +

		Sbjct: 52  HVFENLTDEQKELIDTVLTVQNREDAESFLLKINPYVIPFQEVTAQTLKKLFPKAKKLKL 111

		

		Query: 429 PQEEKLRLQKLTPATYIG 446

		           P  E+L +++L   +Y+ 

		Sbjct: 112 PDMEELDMKEL---SYLS 126

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 38.3 bits (89), Expect = 1e-04

		 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

		

		Query: 570 VIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAM 629

		           ++G+  A+  +   + R    L   +  +   +  G +G GK  + + L  +        

		Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191

		

		Query: 630 VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSV-------ILLDEVEKA 682

		           V I+M+        S L G       +E+G + T A  R            + LDE+   

		Sbjct: 192 VAINMAAIPRDLIESELFG-------HEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243

		

		Query: 683 HADVFNILLQVLDDG---RLTDGQGRTVDFRNTVVIMTSN 719

		             D    LL+VL  G    +        D R   ++  +N

		Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280

		

		

		

		 Score = 36.3 bits (84), Expect = 5e-04

		 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

		

		Query: 151 DQNAEESRQALEKYTIDLTARAESG-KLDPVIGRDEEIRRAIQVLQRRTKNN-PVLI-GE 207

		            +      +AL +     +   +      P++GR   ++   +VL R  + +  ++I GE

		Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168

		

		Query: 208 PGVGKTAI 215

		            G GK  +

		Sbjct: 169 SGTGKELV 176

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score =  173 bits (440), Expect = 1e-48

		 Identities = 102/443 (23%), Positives = 176/443 (39%), Gaps = 62/443 (13%)

		

		Query: 9   KLRNIAIIAHVDHGKTTLVDKLLQQSGTFESARGDVDE--RVMDSNDLEKERGITILAKN 66

		           K+ NI ++AHVD GKTTL + LL  SG      G VD+     D+  LE++RGITI    

		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITEL-GSVDKGTTRTDNTLLERQRGITIQTGI 60

		

		Query: 67  TAINWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHG 126

		           T+  W + ++NI+DTPGH DF  EV R LS++D  +L++ A DG   QTR +       G

		Sbjct: 61  TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120

		

		Query: 127 LKPIVVINKVDRPGARPDWVVDQVFDLF---------VNLGASDEQLDFPII--YASALN 175

		           +  I  INK+D+ G     V   + +           V L  +    +F     + + + 

		Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180

		

		Query: 176 G--------VAG--LEHEDLAEDMT-----------------------PLFEAIVKHVEP 202

		           G        ++G  LE  +L ++ +                        L E I      

		Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240

		

		Query: 203 PKVELDAPFQMQISQLDYNNYVGVIGIGRIKRGSIKPNQPVTIINSEGKTRQGRIGQVLG 262

		                 +    ++ +++Y+     +   R+  G +     V I   E      +I ++  

		Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI----KITEMYT 296

		

		Query: 263 HLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLTVDEPTVTMFFCVNTS 322

		            +  +  + D AY+G+IV +     L ++  + D   +     +    P +      +  

		Sbjct: 297 SINGELCKIDKAYSGEIVILQNEF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKP 355

		

		Query: 323 PFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDEFRVSGRGELHLSVLIENMRRE 382

		               Q          L  ++     +  LR        E  +S  G++ + V    ++ +

		Sbjct: 356 ---QQREML---LDALLEISDS---DPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEK 406

		

		Query: 383 -GYELAVSRPKVIYRDIDGKKQE 404

		              E+ +  P VIY +   KK E

		Sbjct: 407 YHVEIEIKEPTVIYMERPLKKAE 429

		

		

		

		 Score = 32.9 bits (75), Expect = 0.004

		 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

		

		Query: 404 EPYEQVTIDVEEQHQGSVMEALGIRKGEVRDMLPDGKG-RVRLEYIIPSRGLIGFRGDFM 462

		           EPY    I   +++              + D     K   V L   IP+R +  +R D  

		Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVD--TQLKNNEVILSGEIPARCIQEYRSDLT 594

		

		Query: 463 TMTSGTGLLYSSFSHYDEIKGGEIGQRKN 491

		             T+G  +  +    Y    G  + Q + 

		Sbjct: 595 FFTNGRSVCLTELKGYHVTTGEPVCQPRR 623

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score =  170 bits (433), Expect = 1e-52

		 Identities = 77/353 (21%), Positives = 141/353 (39%), Gaps = 46/353 (13%)

		

		Query: 1   MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLT--YAANQSALR-EVENNPRYVFEKV 57

		           M  LVTG +GFIG  + + ++      V+ ID L   Y  +    R E+   P + F K+

		Sbjct: 1   MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 58  DICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHT 117

		           D+ D   + ++F     + V        V  S+     +  +N+ G   +LE  ++    

		Sbjct: 60  DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN--- 116

		

		Query: 118 LDEAKKTTFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTY 177

		             + +   +     S+  VYG L+   P  T+ S  HP S Y+A+K A+  +   +   Y

		Sbjct: 117 --KIQHLLYA----SSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169

		

		Query: 178 GLPVIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYL 237

		           GLP         YG +   +  +       + GK + +Y  G+  RD+ +++D  +A   

		Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229

		

		Query: 238 VL------------------TKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNH 279

		           +                           YNIG +     ++ ++ +   L     +K N 

		Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI--EAKKN- 286

		

		Query: 280 IKYYEDLMTFVKDRPGHDVRYSL-DCSKIHAELGWQPQITFEQGLRQTVKWYL 331

		                     +  +PG DV  +  D   ++  +G+ P+ T + G++  V WY 

		Sbjct: 287 ---------MLPLQPG-DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329

		

		

		>60KDINNERMP#60kDa inner membrane protein signature.

		          Length = 548

		

		 Score =  780 bits (2015), Expect = 0.0

		 Identities = 304/551 (55%), Positives = 397/551 (72%), Gaps = 16/551 (2%)

		

		Query: 1   MDSRRSLLVLALIFISFLVYQQWQLDKNPPVQTEQTTSITATSDVPASSPSNSQAIADSQ 60

		           MDS+R+LLV+AL+F+SF+++Q W+ DKNP  Q +QTT  T T+   A S ++    A  Q

		Sbjct: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTA---AGSAADQGVPASGQ 57

		

		Query: 61  TRGRIITLENDVFRLKIDTLGGDVISSELLKYDAELDSKTPFELLKDTKEHIYIAQSGLI 120

		             G++I+++ DV  L I+T GGDV  + L  Y  EL+S  PF+LL+ + + IY AQSGL 

		Sbjct: 58  --GKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLT 115

		

		Query: 121 GKNGIDTRSG--RAQYQIEGDNFKLAEGQESLSVPLLF-EKDGVTYQKIFVLKRGSYDLG 177

		           G++G D  +   R  Y +E D + LAEGQ  L VP+ + +  G T+ K FVLKRG Y + 

		Sbjct: 116 GRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVLKRGDYAVN 175

		

		Query: 178 VDYKIDNQSGQAIEVEPYGQLKHSIV------ESSGNVAMPTYTGGAYSSSETNYKKYSF 231

		           V+Y + N   + +E+  +GQLK SI         S N A+ T+ G AYS+ +  Y+KY F

		Sbjct: 176 VNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKF 235

		

		Query: 232 SDMQDN-NLSIDTKAGWVAVLQHYFVSAWIPNQDVNNQLYTITDSKNNVASIGYRGSVVT 290

		             + DN NL+I +K GWVA+LQ YF +AWIP+ D  N  YT  +  N +A+IGY+   V 

		Sbjct: 236 DTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT-ANLGNGIAAIGYKSQPVL 294

		

		Query: 291 IPAGSQETITSSLWTGPKLQNQMATVANNLDLTVDYGWAWFIAKPLFWLLTFIQGIVSNW 350

		           +  G    + S+LW GP++Q++MA VA +LDLTVDYGW WFI++PLF LL +I   V NW

		Sbjct: 295 VQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNW 354

		

		Query: 351 GLAIICVTIVVKAILYPLTKAQYTSMAKMRILQPKMQEMRERFGDDRQRMSQEMMKLYKE 410

		           G +II +T +V+ I+YPLTKAQYTSMAKMR+LQPK+Q MRER GDD+QR+SQEMM LYK 

		Sbjct: 355 GFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKA 414

		

		Query: 411 EKVNPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFFGWIQDLSAQDPYYILPILMGIS 470

		           EKVNPLGGC P+L+QMPIF+ALY+  + +VELR APF  WI DLSAQDPYYILPILMG++

		Sbjct: 415 EKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVT 474

		

		Query: 471 MFLLQKMSPTPVTDPTQQKVMNFMPLVFMFFFLWFPSGLVLYWLVSNLITIAQQQLIYRG 530

		           MF +QKMSPT VTDP QQK+M FMP++F  FFLWFPSGLVLY++VSNL+TI QQQLIYRG

		Sbjct: 475 MFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRG 534

		

		Query: 531 LEKKGLHSRKK 541

		           LEK+GLHSR+K

		Sbjct: 535 LEKRGLHSREK 545

		

		

		>PF03309#Bvg accessory factor

		          Length = 271

		

		 Score = 29.3 bits (66), Expect = 0.031

		 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 12/74 (16%)

		

		Query: 5  LGIDCGGTFIKAAIFDQNGTLQSIARRNIPIISEKPGYAERDMDELWNLCAQVIQKTIRQ 64

		          L ID   T     +   +G    +  +   I +E     E   DEL      +I      

		Sbjct: 3  LAIDVRNTHTVVGLISGSGDHAKV-VQQWRIRTEP----EVTADELALTIDGLIGDD--- 54

		

		Query: 65 SSILPQQIKAIGIS 78

		               +++      

		Sbjct: 55 ----AERLTGASGL 64

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 38.9 bits (90), Expect = 2e-04

		 Identities = 34/292 (11%), Positives = 83/292 (28%), Gaps = 33/292 (11%)

		

		Query: 881  EINRERNEIDRELNQFNSGEQQLRIQLDNAKERLQLLNKLIPQLNVLADEDLIDRIEECR 940

		            +++     +    ++        + +L    + L      I        ++L  R  +  

		Sbjct: 75   DLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI--------QELEARKADLE 126

		

		Query: 941  EQLDIAE----QDEYFIRQHGVTLSQLEPIANSLQSDPENYEGLKNELTQAIERQKQVQQ 996

		            + L+ A      D   I+      + L      L+   E         +  I+  +  + 

		Sbjct: 127  KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186

		

		Query: 997  RVFALADVVQRKPHFGYEDAGQAET------------SELNEKLRQRLEQMQAQRDTQRE 1044

		             + A    +++        +                 +     L + LE           

		Sbjct: 187  ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246

		

		Query: 1045 QVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGEISDLGVRADDGAEERARIR----- 1099

		            +++  +++ A       +L+ + +           +I  L         E+A +      

		Sbjct: 247  KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306

		

		Query: 1100 ----RDELHQQLSTSRQRRSYVEKQLTLIESEADNLNRLIRKTERDYKTQRE 1147

		                R  L + L  SR+ +  +E +   +E +        +   RD    RE

		Sbjct: 307  LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358

		

		

		

		 Score = 33.5 bits (76), Expect = 0.008

		 Identities = 52/358 (14%), Positives = 113/358 (31%), Gaps = 29/358 (8%)

		

		Query: 414 ANDALEESQAQFEQTEIEIDAVRSQLADYQQALDAQQTRALQYQQAIAALEKAKTLCGLA 473

		             +  E S          ++ V+ +   ++   +  + +         AL+         

		Sbjct: 34  VVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKD-------- 85

		

		Query: 474 DLSVKNVEDYHAEFDAHAESLTETVLELEHKMSISEAAKSQFDKAYQLVCKIAGEMPRST 533

		                 + +  +          +++ E   K+   EA K+  +KA +     +     + 

		Sbjct: 86  --HNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTAD-SAK 142

		

		Query: 534 AWESAKELLREYPSQKLQAQQTPQLRTKLHELEQRYAQQQSAVKLLNDFNQRANLSLQTA 593

		                 E       +    +              +    ++    L         +L+ A

		Sbjct: 143 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 202

		

		Query: 594 EELEDYHAEQEALIEDISARLSEQVENRSTLRQKRENLTALYDENARKAPAWLTAQAALE 653

		                      A I+ + A  +     ++ L +  E        ++ K     T +A   

		Sbjct: 203 MNFST---ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK---TLEAEKA 256

		

		Query: 654 RLEQQSGERFEHSQDVMNFMQSQLVKERELTMQRDQLEQKRLHLDE--QISRLSQPDGSE 711

		            LE +  E  +  +  MNF  +   K + L  ++  LE ++  L+   Q+   ++     

		Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316

		

		Query: 712 DPRLNMLAERFGGVLLSELYDDVTIEDAPYFSALYGPSRHAIVVRDLNAVREQLAQLE 769

		           D   +  A++       +L +   I +A         SR + + RDL+A RE   QLE

		Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEA---------SRQS-LRRDLDASREAKKQLE 364

		

		

		

		 Score = 30.8 bits (69), Expect = 0.047

		 Identities = 34/268 (12%), Positives = 74/268 (27%), Gaps = 22/268 (8%)

		

		Query: 1021 TSELNEKLRQRLEQMQAQRDTQREQVRQKQSQFAEYNRVLIQLQSSYDSKYQLLNELIGE 1080

		              E  +K       ++ +        +  +    E    L   +       + L+E   +

		Sbjct: 55   VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114

		

		Query: 1081 ISDLGVRADDG-----AEERARIRRDELHQQLSTSRQRRSYVEKQLTLIESEADNLNRLI 1135

		            I +L  R  D                   + L   +   +  +  L      A N +   

		Sbjct: 115  IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174

		

		Query: 1136 RKTERDYKTQRELVVAAKVSWCVVLRLSRNSDMEKRLNRRELAYLSADELRSMSDKALGA 1195

		                +  + ++  + A            R +++EK L        +        +    A

		Sbjct: 175  SAKIKTLEAEKAALEA------------RQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222

		

		Query: 1196 LRTAVADNEYLRDSLR-VSEDSRKPENKVRFFIAVYQH----LRERIRQDIIKTDDPIDA 1250

		            L    AD E   +     S         +    A  +     L + +   +  +      

		Sbjct: 223  LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 282

		

		Query: 1251 IEQMEIELSRLTAELTGREKKLAISSES 1278

		            I+ +E E + L AE    E +  + + +

		Sbjct: 283  IKTLEAEKAALEAEKADLEHQSQVLNAN 310

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 88.3 bits (219), Expect = 2e-22

		 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

		

		Query: 1   MTR-KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGR 58

		           MT   IL+ +D+ AIR ++   LS+  YDV   S+  T    I   +  L++ D ++P  

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

		

		Query: 59  SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118

		           +    +  IKK      +P+++++A++T    I     GA DY+ KPF    L+  I   

		Sbjct: 61  NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

		

		Query: 119 WRRIYEQQSQ 128

		                 + S+

		Sbjct: 119 LAEPKRRPSK 128

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 32.4 bits (73), Expect = 8e-04

		 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

		

		Query: 91  KKRQQALQTGQKIEPLTNHNYLKSVYETQKPHFAVIRSGKNQSETVKAQ-------QAED 143

		            +RQQ       +E     NY ++  E  + +  V R+ + Q++ V+          A +

		Sbjct: 304 NRRQQEWDATHPVEAA-ERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAAN 362

		

		Query: 144 KKVQDAILYVERFVQLGQEEFVKNSPEYQIWLNHKAQKQ 182

		           K + DAI  +++F +   +        +Q+    KAQ+ 

		Sbjct: 363 KTLADAIAEIKQFNRFAHDPMAGGHRMWQM-AGLKAQRA 400

		

		

		>BACINVASINB#Salmonella/Shigella invasin protein B signature.

		          Length = 593

		

		 Score = 35.9 bits (82), Expect = 5e-04

		 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

		

		Query: 507 VAEGVTVLMDDTTNTKEKSEAIGSIAGATAGAIVGQALIPIPVVGAAVGSYLGGWLGEWL 566

		           + + +T  ++     K+ +E  GSI GA   AI   A++ + VV A VG      LG  L

		Sbjct: 385 IGKAITKALEGLGVDKKTAEMAGSIVGAIVAAI---AMVAVIVVVAVVGKGAAAKLGNAL 441

		

		Query: 567 GSEVGEYLSDPEP 579

		              +GE +    P

		Sbjct: 442 SKMMGETIKKLVP 454

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 32.0 bits (72), Expect = 0.003

		 Identities = 13/56 (23%), Positives = 22/56 (39%)

		

		Query: 1   MSNNDFLVLKNITKAFGKAVVIDNLDLTIKRGTMVTLLGPSGCGKTTVLRLVAGLE 56

		                   L+ + K      V   ++   K    V L G  G GK+T++  + GL+

		Sbjct: 565 YKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620

		

		

		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

		          signature.

		          Length = 290

		

		 Score = 29.8 bits (67), Expect = 0.015

		 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

		

		Query: 4  FALIVGIVALAIFSFLYIQLYRV--------QSAINEQLAQQNIAVQSINLSLFSPA 52

		          +  +V + +L I SFL + ++R+        Q+         +  V     +L  P 

		Sbjct: 15 YFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPR 71

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 54.9 bits (132), Expect = 2e-10

		 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 1/185 (0%)

		

		Query: 36  LSDIAQSFDMQTADTGLMMTVYAWTVLIMSLPAMLATGNMERKSLLIKLFIIFIVGHILS 95

		           L DIA  F+   A T  + T +  T  I +      +  +  K LL+   II   G ++ 

		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96

		

		Query: 96  VIAWNFW-ILLLARMCIALAHSVFWSITASLVMRISPKHKKTQALGMLAIGTALATILGL 154

		            +  +F+ +L++AR       + F ++   +V R  PK  + +A G++    A+   +G 

		Sbjct: 97  FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156

		

		Query: 155 PIGRIVGQLVGWRVTFGIIAVLALSIMFLIIRLLPNLPSKNAGSIASLPLLAKRPLLLWL 214

		            IG ++   + W     I  +  +++ FL+  L   +  K    I  + L++   +   L

		Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216

		

		Query: 215 YVTTA 219

		           + T+ 

		Sbjct: 217 FTTSY 221

		

		

		>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature.

		          Length = 483

		

		 Score = 32.0 bits (72), Expect = 0.006

		 Identities = 15/49 (30%), Positives = 24/49 (48%)

		

		Query: 166 EKMENADENDRTSEEEQDEWEQEFDFDSEEDTALIDDALDEELEEEQDK 214

		            K  NA+   +    +Q   E+EFD+ +E   AL++     EL E + K

		Sbjct: 388 SKKNNAEMKSKQMSTDQMTSEKEFDYYTETLKALLEKEDSAELNENEKK 436

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 44.4 bits (105), Expect = 4e-07

		 Identities = 65/347 (18%), Positives = 120/347 (34%), Gaps = 44/347 (12%)

		

		Query: 1   MKKTLAALIVGAFAASAANAAVVYNNEGTNVELGGRLSIIAEQSNSTVDNQKQQHGALRN 60

		           MKK+L AL + A   +A     +Y      VE    ++    Q+ S           + +

		Sbjct: 1   MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTG-----IVD 55

		

		Query: 61  QGSRFHIKATHNFGDGFYAQGYLETRFVTKASENGSDNFGDITSKYAYVTLGNKAFGEVK 120

		            GS+   K   + G+G  A   +E     KAS  G+D      ++ +++ L    FG+++

		Sbjct: 56  LGSKIGFKGQEDLGNGLKAIWQVE----QKASIAGTD--SGWGNRQSFIGLK-GGFGKLR 108

		

		Query: 121 LGRAKTIADGITS--AEDKEYGVLNNSDYIPTSGNTVGYTFKGID--GLVLGANYLLAQK 176

		           +GR  ++          D +   L  +         +   +   +  GL     Y L   

		Sbjct: 109 VGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDN 168

		

		Query: 177 RE-----------------------GAKNTNKQPNDKAGEVRIGEINNGIQVGAKYDAND 213

		                                    GA   + Q  +        E     ++ + YD + 

		Sbjct: 169 AGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVN----IEKYQIHRLVSGYDNDA 224

		

		Query: 214 IVAKIAYGRTNYKYNEADEHTQQLNGVLATLGYRFSDLGLLVSLDSGYAKTKNYKTKHEK 273

		           + A +A  + + K  E +        V ATL YRF ++   VS   G+  + +    +  

		Sbjct: 225 LYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNND 284

		

		Query: 274 RYFVSPGFQYELMEDTNVYGNFKYERTSVDQGEKTREQAVLFGVDHK 320

		              V  G +Y+  + T+   +  + +       K    A   G+ HK

		Sbjct: 285 YDQVVVGAEYDFSKRTSALVSAGWLQEG-KGESKFVSTAGGVGLRHK 330

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 33.9 bits (78), Expect = 9e-04

		 Identities = 12/29 (41%), Positives = 19/29 (65%)

		

		Query: 339 PARAIGIDDRLGSVEKGKIANLAVFTPNY 367

		           PA A G+   +GS+E GK A+L ++ P +

		Sbjct: 413 PAIAHGLSHEIGSLEVGKRADLVLWNPAF 441

		

		

		>PF05860#haemagglutination activity domain.

		          Length = 117

		

		 Score = 94.5 bits (235), Expect = 4e-25

		 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

		

		Query: 38  NVSTIGNKMTIDQKTPTTQ---IDWHSFDIGQNKEVEFKQPDANSVAYNRVTGGNASQIQ 94

		           N++T GN   I++ T         +  F +  +    F  P       +RVTGG+ S I 

		Sbjct: 14  NITTEGNTRIIERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNID 73

		

		Query: 95  GKLTANGK--VYLANPNGVIITQGAEINVAGLFATTK 129

		           G + AN    ++L NPNG+I  Q A +++ G F  + 

		Sbjct: 74  GLIRANATANLFLINPNGIIFGQNARLDIGGSFVGST 110

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 27.5 bits (61), Expect = 0.033

		 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 31/171 (18%)

		

		Query: 1   MSLFALFYMLFA-------YLLGSISSAILICRIAGLPDPRQN---GSHNPGATNVLRIG 50

		           MS+  +F+MLF         ++  +S  I +  I  + DP  +   G + P    VL  G

		Sbjct: 207 MSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGG 266

		

		Query: 51  NRKSALAVLIFDMLKGMIPVWAGYYLGLTQFELGMVALGACLGHIFPIFFQFKGGK---- 106

		                +A  +      M+P        L+  E+G V +    G +  I F + GG     

		Sbjct: 267 IIFGTVAGFVS-----MVPYMMKDVHQLSTAEIGSVII--FPGTMSVIIFGYIGGILVDR 319

		

		Query: 107 ----GVATAFGAIAPISWAVAG------SMFGTWIFVFLVSGYSSLSAVIS 147

		                V         +S+  A       S F T I VF++ G S    VIS

		Sbjct: 320 RGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 44.5 bits (105), Expect = 6e-07

		 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

		

		Query: 423 LRELLATFRLTIQEANLQL-ALKQVIDSLRSQTTMQ-------MNVNCQLPSQSLNPQQL 474

		           L  L    R +++ +N +  +L   +  + S   +        +    Q+    ++ Q  

		Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVP 256

		

		Query: 475 VHVLQIVREATTNAIKH-----SQGTVIEISARINAEGEYEILVEDDGVGIPNLEEPEGH 529

		             ++Q + E   N IKH      QG  I +    +  G   + VE+ G       +    

		Sbjct: 257 PMLVQTLVE---NGIKHGIAQLPQGGKILLKGTKD-NGTVTLEVENTGSLALKNTKESTG 312

		

		Query: 530 YGLNIMAERCRQL---NAQLHIHRREQGGTQVKITLP 563

		            GL  + ER + L    AQ+ +   +QG     + +P

		Sbjct: 313 TGLQNVRERLQMLYGTEAQIKL-SEKQGKVNAMVLIP 348

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 27.9 bits (62), Expect = 0.049

		 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

		

		Query: 4   IGKIIGVFLGWKVGGFFGAIAGLILGSIADKKLYELGSVSSS 45

		           IG +I +F G      FG I G+++       +  +G    S

		Sbjct: 294 IGSVI-IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 36.3 bits (84), Expect = 2e-04

		 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 53/192 (27%)

		

		Query: 51  LEESAVENEEKLPTPHEIRAHLDDYVIGQDYAKKVLSVAVYNHYKRLRTNYESNDVELGK 110

		           +   A+   ++ P+  E  +     ++G+  A       +Y    R         +    

		Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA----MQEIYRVLAR---------LMQTD 160

		

		Query: 111 SNILLIGPTGSGKTLLAQTL---ARRLNVPFAMADATTLTEAGYVGEDVENVLQKLLQNC 167

		             +++ G +G+GK L+A+ L    +R N PF   +   +           ++++  L   

		Sbjct: 161 LTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIP---------RDLIESELFGH 211

		

		Query: 168 EYDT------------EKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEG 215

		           E               E+AE G +++DEI  +                  Q  LL++++ 

		Sbjct: 212 EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP--------------MDAQTRLLRVLQQ 257

		

		Query: 216 TIASIPPQGGRK 227

		                   GGR 

		Sbjct: 258 G--EYTTVGGRT 267

		

		

		>SECETRNLCASE#Bacterial translocase SecE signature.

		          Length = 127

		

		 Score =  118 bits (298), Expect = 4e-38

		 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)

		

		Query: 2   IFFAAAAIGNIYFQQIYSLPIRVIGMAIALVIAFILAAITNQGTKARAFFNDSRTEARKV 61

		                A +GN  ++ I  LP+R + + I +  A  +A +T +G    AF  ++RTE RKV

		Sbjct: 24  ALLLVAIVGNYLYRDIM-LPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKV 82

		

		Query: 62  VWPTRAEARQTTLIVIGVTMIASLFFWAVDSIIVTVINFLTDLRF 106

		           +WPTR E   TTLIV  VT + SL  W +D I+V +++F+T LRF

		Sbjct: 83  IWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLRF 127

		

		

		>VACJLIPOPROT#VacJ lipoprotein signature.

		          Length = 251

		

		 Score =  319 bits (818), Expect = e-113

		 Identities = 106/253 (41%), Positives = 156/253 (61%), Gaps = 11/253 (4%)

		

		Query: 4   KTILTAL-LSAIALTGCANNNDTKQVSERNDSLEDFNRTMWKFNYNVIDRYVLEPAAKGW 62

		           K  L+AL L    L GCA++   +Q   R+D LE FNRTM+ FN+NV+D Y++ P A  W

		Sbjct: 2   KLRLSALALGTTLLVGCASSGTDQQ--GRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAW 59

		

		Query: 63  NNYVPKPISSGLAGIANNLDEPVSFINRLIEGEPKKAFVHFNRFWINTVFGLGGFIDFAS 122

		            +YVP+P  +GL+    NL+EP   +N  ++G+P +  VHF RF++NT+ G+GGFID A 

		Sbjct: 60  RDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAG 119

		

		Query: 123 -ASKELRIDNQRGFGETLGSYGVDAGTYIVLPIYNATTPRQLTGAVVDAAYMYPFWQWVG 181

		            A+ +L+      FG TLG YGV  G Y+ LP Y + T R   G + DA  +YP   W+ 

		Sbjct: 120 MANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADA--LYPVLSWLT 177

		

		Query: 182 GPWALVKYGVQAVDARAKNLNNAELLRQAQDPYITFREAYYQNLQFKVNDGKLVESK--- 238

		            P ++ K+ ++ ++ RA+ L++  LLRQ+ DPYI  REAY+Q   F  N G+L   +   

		Sbjct: 178 WPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPN 237

		

		Query: 239 -ESLPDDILKEID 250

		            +++ DD LK+ID

		Sbjct: 238 AQAIQDD-LKDID 249

		

		

		>PF01206#SirA family protein

		          Length = 76

		

		 Score = 91.7 bits (228), Expect = 1e-28

		 Identities = 25/71 (35%), Positives = 42/71 (59%)

		

		Query: 8  QTLDTLGLRCPEPVMLVRKNIRHLNDGEILLIIADDPATTRDIPSFCQFMDHTLLQCEVE 67

		          Q+LD  GL CP P++  +K +  +N GE+L ++A DP + +D  SF +   H LL+ + E

		Sbjct: 6  QSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEE 65

		

		Query: 68 KPPFKYWVKRG 78

		             + + +KR 

		Sbjct: 66 DGTYHFRLKRA 76

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 56.9 bits (137), Expect = 2e-12

		 Identities = 18/77 (23%), Positives = 35/77 (45%)

		

		Query: 1  MRQAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH 60

		           +Q   +  + I     RL +++G++  S+ ++AK A V  G IY +FK+K +L  +   

		Sbjct: 5  TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64

		

		Query: 61 RVFSMFMATLEKDFDET 77

		             S       +   + 

		Sbjct: 65 LSESNIGELELEYQAKF 81

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 52.5 bits (126), Expect = 1e-09

		 Identities = 17/55 (30%), Positives = 30/55 (54%)

		

		Query: 74  GAVSQVLVQNGQNVKKGEVLVELDSSVERANLQAAQAQLSALRQTYQRYVGLLNS 128

		             V +++V+ G++V+KG+VL++L +    A+    Q+ L   R    RY  L  S

		Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS 159

		

		

		

		 Score = 44.0 bits (104), Expect = 7e-07

		 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 39/216 (18%)

		

		Query: 102 RANLQAAQAQLSALRQTYQRYVGLLNSNAVSRQEMDNAKAAYDAQVASIESLKAAIERRK 161

		            + + +A+ +   + Q ++  +           ++             +   +   +   

		Sbjct: 279 ESEILSAKEEYQLVTQLFKNEI---------LDKLRQTTDNIGLLTLELAKNEERQQASV 329

		

		Query: 162 IVAPFDGKAGIVKIN-VGQYVNVGT---EIVRVEDTSSMKVDFALSQNDLDKLHIGQRVT 217

		           I AP   K   +K++  G  V        IV  +DT  ++V   +   D+  +++GQ   

		Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT--LEVTALVQNKDIGFINVGQNAI 387

		

		Query: 218 ATTDARLGETFSARITAIEPAINSSTGLVDVQATFDPEDGHKLLSGMFSRLRIALPTETN 277

		              +A     F          +      +++ A  D   G          + I++     

		Sbjct: 388 IKVEA-----FPYTRY---GYLVGKVKNINLDAIEDQRLGL------VFNVIISIEENCL 433

		

		Query: 278 QVVVPQVAISYNMYGE----------IAYLLEPLSE 303

		                 + +S  M             I+YLL PL E

		Sbjct: 434 STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEE 469

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score =  905 bits (2340), Expect = 0.0

		 Identities = 324/1044 (31%), Positives = 538/1044 (51%), Gaps = 47/1044 (4%)

		

		Query: 11   DIFIRRPVLAVSISLLMIILGLQAISKLAVREYPKMTTTVITVSTAYPGADANLIQAFVT 70

		            + FIRRP+ A  +++++++ G  AI +L V +YP +    ++VS  YPGADA  +Q  VT

		Sbjct: 3    NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62

		

		Query: 71   SKLEESIAQADNIDYMSSTSAPS-SSTITIKMKLNTDPAGALADVLAKVNAVKSALPNGI 129

		              +E+++   DN+ YMSSTS  + S TIT+  +  TDP  A   V  K+      LP  +

		Sbjct: 63   QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122

		

		Query: 130  EDPSVSSS-SGGSGIMYISFRSKKLDSSQ--VTDYINRVVKPQFFTIEGVAEVQVFGAAE 186

		            +   +S   S  S +M   F S    ++Q  ++DY+   VK     + GV +VQ+FGA +

		Sbjct: 123  QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-Q 181

		

		Query: 187  YALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDN------GYYVSYRNKVETTTK 240

		            YA+RIWLD   +    L+   V++ L   N Q AAG         G  ++     +T  K

		Sbjct: 182  YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241

		

		Query: 241  SVEQLSNLIISSNGD-DLVRLRDIATVELNKENDNSRATANGAESVVLAINPTSTANPLT 299

		            + E+   + +  N D  +VRL+D+A VEL  EN N  A  NG  +  L I   + AN L 

		Sbjct: 242  NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301

		

		Query: 300  VAEKIRPLYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIGS 359

		             A+ I+     ++   P  M+    YD T  +  SIHEV+KT+ EA ++V +V+ +F+ +

		Sbjct: 302  TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361

		

		Query: 360  FRAILIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENIDRHIK 419

		             RA LIP +A+P+ L+G   +L +F +SIN +T+  ++LAIGL+VDDAIVV+EN++R + 

		Sbjct: 362  MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421

		

		Query: 420  AGETPFRAAII-GTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFIS 478

		              + P + A      +I   ++ + + L AV+ PMA  GG TG ++++F++T+  A+ +S

		Sbjct: 422  EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481

		

		Query: 479  GVVALTLSPMMSSKLLKSNAKP---------TWMEERVEHTLGKVNRVYEYMLDLVMLNR 529

		             +VAL L+P + + LLK  +            W     +H+   VN     +  ++    

		Sbjct: 482  VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS---VNHYTNSVGKILGSTG 538

		

		Query: 530  KSMLAFAVVIFSTLPFLFNSLSSELTPNEDKGAFIAIGNAPSSVNVDYIQNAMQP----Y 585

		            + +L +A+++   +  LF  L S   P ED+G F+ +   P+    +  Q  +      Y

		Sbjct: 539  RYLLIYALIVAGMV-VLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597

		

		Query: 586  MKNVMETPEVSF---GMSIAGAPTSNSSLNIITLKDWKERSRK---QSAIMNEINEKAKS 639

		            +KN     E  F   G S +G    N+ +  ++LK W+ER+       A+++    +   

		Sbjct: 598  LKNEKANVESVFTVNGFSFSG-QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656

		

		Query: 640  IPEVSVSAFNIPEIDTG--EQGPPVSIVLKTAQDYKSLANTAEKFLS-AMKASGKFIYTN 696

		            I +  V  FN+P I       G    ++ +    + +L     + L  A +     +   

		Sbjct: 657  IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716

		

		Query: 697  LDLTYDTAQMTISVDKEKAGTYGITMQQISNTLGSFLSGATVTRVDVDGRAYKVISQVKR 756

		             +   DTAQ  + VD+EKA   G+++  I+ T+ + L G  V      GR  K+  Q   

		Sbjct: 717  PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776

		

		Query: 757  DDRLSPESFQNYYLTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISS 816

		              R+ PE     Y+ ++NG+ VP S+  +         L R++ L S EI     PG SS

		Sbjct: 777  KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836

		

		Query: 817  GDAIAWLQQQATDNLPQGYTFDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIR 876

		            GDA+A ++  A+  LP G  +D+   + Q    GN      A++ +++FL LA  +ES  

		Sbjct: 837  GDAMALMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895

		

		Query: 877  DPMVIMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAK 936

		             P+ +M+ VPL + G L++        +     ++Y  VGL+T +GL  K+ IL+ E AK

		Sbjct: 896  IPVSVMLVVPLGIVGVLLAAT------LFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949

		

		Query: 937  EEQLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAG 996

		            +     GK  +EA   A ++RLRPILMT+ A + G++PL  + GAG+ ++ ++GI ++ G

		Sbjct: 950  DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009

		

		Query: 997  LSIGTIFTLFVLPVVYSYVATEHK 1020

		            +   T+  +F +PV +  +    K

		Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFK 1033

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  143 bits (362), Expect = 1e-39

		 Identities = 91/397 (22%), Positives = 172/397 (43%), Gaps = 17/397 (4%)

		

		Query: 23  LSLATFMQVLDSTIANVAIPTIAGDLGASFSQGTWVITSFGVANAISIPITGWLAKRFGE 82

		           L + +F  VL+  + NV++P IA D     +   WV T+F +  +I   + G L+ + G 

		Sbjct: 19  LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78

		

		Query: 83  VRLFLVSTFLFVVSSWLCGIADSLEALIIF-RVIQGAVAGPVIPLSQSLLLNNYPPEKRG 141

		            RL L    +    S +  +  S  +L+I  R IQGA A     L   ++    P E RG

		Sbjct: 79  KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138

		

		Query: 142 MALAFWSMTIVVAPIFGPILGGWISDNIHWGWIFFINVPIGLSVVLISWKILGSRESEIV 201

		            A       + +    GP +GG I+  IHW   + + +P+ ++++ + + +   ++   +

		Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM-ITIITVPFLMKLLKKEVRI 195

		

		Query: 202 HQPIDKVGLVLLVLGVGCLQLMLDQGREQDWFNSNEIIILAVVAVVCLIALVIWELTDDN 261

		               D  G++L+ +G+    L          F ++  I   +V+V+  +  V       +

		Sbjct: 196 KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245

		

		Query: 262 PVVDISLFHSRNFSVGCLCTSLAFLIYLGSVVLIPLLLQQVFHY-TATWAGLAASPVGLF 320

		           P VD  L  +  F +G LC  + F    G V ++P +++ V    TA    +   P  + 

		Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305

		

		Query: 321 PILLSPIIGRFGYKIDMRILVTISFIVYAITFYWRAVTFEPSMTFVDVALPQLVQGLAVS 380

		            I+   I G    +     ++ I     +++F   +   E +  F+ + +  ++ GL+ +

		Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365

		

		Query: 381 CFFMPLTTITLSGLPAHKMASASSLFNFLRTLAGSVG 417

		                ++TI  S L   +  +  SL NF   L+   G

		Sbjct: 366 K--TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 79.9 bits (197), Expect = 2e-18

		 Identities = 43/287 (14%), Positives = 87/287 (30%), Gaps = 35/287 (12%)

		

		Query: 91  ELDDTNAKLSFEQAKSNLANAVRQVE----QLGFTVQQLQSAVHANEISLAQAQGNLARR 146

		           E +        ++  S   N   Q E    +       + + ++  E      +  L   

		Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240

		

		Query: 147 VQLEKMGAIDKESFQHAKEAVELAKANLNASKNQLAANQALLRNVPLR------------ 194

		             L    AI K +    +     A   L   K+QL   ++ + +                

		Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300

		

		Query: 195 ------EQPQIQNAINSLKQAWLNLQRTKIRSPIDGYVARRNVQ-VGQAVSVGGALMAVV 247

		                     I      L +     Q + IR+P+   V +  V   G  V+    LM +V

		Sbjct: 301 LDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV 360

		

		Query: 248 -SNEQMWLEANFKETQLTNMRIGQPVKIHFDLYGKNK--EFDGVINGIEMGTGNAFSLLP 304

		             ++ + + A  +   +  + +GQ   I  + +   +     G +  I +          

		Sbjct: 361 PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------I 413

		

		Query: 305 SQNATGNWIKVVQRVPVRIKLDPQQFTETPLRIGLSATAKVRISDSS 351

		                G    V+  +         +    PL  G++ TA+++    S

		Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNK--NIPLSSGMAVTAEIKTGMRS 458

		

		

		>CARBMTKINASE#Bacterial carbamate kinase signature.

		          Length = 314

		

		 Score = 36.0 bits (83), Expect = 2e-04

		 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

		

		Query: 129 IPVINENDAVATAEIKVGDNDNLSALVAILVQAEQLYLLTDQQGLFDSDPRKNPEAKLIP 188

		           +PVI E+  +   E  V D D     +A  V A+   +LTD  G          E  L  

		Sbjct: 197 VPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILTDVNGAA-LYYGTEKEQWLRE 254

		

		Query: 189 V-VEQITDHIRSIAGGSGTNLGTGGMMTKIIAADVATRSGIETIIAPGNRPNVIADL--- 244

		           V VE++  +          +   G M  K++AA              G    +IA L   

		Sbjct: 255 VKVEELRKYYEE------GHFKAGSMGPKVLAAIRFIEW--------GGERAIIAHLEKA 300

		

		Query: 245 --AYEQNIGTKFI 255

		             A E   GT+ +

		Sbjct: 301 VEALEGKTGTQVL 313

		

		

		

		 Score = 33.6 bits (77), Expect = 9e-04

		 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

		

		Query: 3  KKTIVVKFGTSTLTQGSPKLNSPHMMEIVR----QIAQLHNDGFRIVIV 47

		           K +V+  G + L Q   K +   MM+ VR    QIA++   G+ +VI 

		Sbjct: 2  GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVIT 50

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 98.7 bits (246), Expect = 7e-26

		 Identities = 78/348 (22%), Positives = 131/348 (37%), Gaps = 68/348 (19%)

		

		Query: 2   IIVTGGAGFIGSNIVKALNDLGRKDILVVDNLKD--------------GTKFANLVDLDI 47

		            +VTG AGFIG ++ K L + G   ++ +DNL D                       +D+

		Sbjct: 3   YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

		

		Query: 48  ADYCDKEDFIASIIAGDEFGDIDAVFHEGACSATTEWDGKYIMHNNYEYSK-------EL 100

		           AD     + +  + A   F   + VF      A      +Y + N + Y+         +

		Sbjct: 62  ADR----EGMTDLFASGHF---ERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109

		

		Query: 101 LHYCLDREIP-FFYASSAATYGDTKV--FREEREFEGPLNVYGYSKFLFDQYVRNILPEA 157

		           L  C   +I    YASS++ YG  +   F  +   + P+++Y  +K   +          

		Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169

		

		Query: 158 KSPVCGFRYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEHFRRDFVYVGDVA 217

		             P  G R+F VYGP    +  MA   F     +L+G++  ++   +  +RDF Y+ D+A

		Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVYNYGKM-KRDFTYIDDIA 224

		

		Query: 218 AVNI------------WCWQNGISG-------IYNLGTGNAESFRAVADAVVKFHG-KGE 257

		              I            W  + G          +YN+G  +         A+    G + +

		Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284

		

		Query: 258 IETIPFPEHLKSRYQEYTQADLTKLRS-TGYDKPFKTVAEGVTEYMAW 304

		              +P            T AD   L    G+  P  TV +GV  ++ W

		Sbjct: 285 KNMLPLQPG----DVLETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 27.5 bits (61), Expect = 0.028

		 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 11/37 (29%)

		

		Query: 75  TSPA-INSLAKEGYQVVSVALRSGNEADVNDYLSKND 110

		           T PA +N+L  +G  VV+V          NDYL++ D

		Sbjct: 113 TLPAYLNALTGKGVHVVTV----------NDYLAQRD 139

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 37.5 bits (87), Expect = 1e-04

		 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 53/178 (29%)

		

		Query: 194 DLTDIIGQ----QHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLPEMTDLEAIE 249

		           D   ++G+    Q   R L         L+  G  GTGK ++A              A+ 

		Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA-------------RALH 181

		

		Query: 250 TASVTSLVQNELNFHNWKQRPFRAPHHSASMP------ALVG-------GGTIPKPGEIS 296

		                            +  PF A  + A++P       L G       G      G   

		Sbjct: 182 DYG------------KRRNGPFVAI-NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228

		

		Query: 297 LATNGVLFLDEL----PEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLVAAMN 350

		            A  G LFLDE+     + + ++L      L+ GE         I+   R  +VAA N

		Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRV----LQQGEYTTVGGRTPIRSDVR--IVAATN 280

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 30.2 bits (68), Expect = 0.011

		 Identities = 9/16 (56%), Positives = 12/16 (75%)

		

		Query: 54  VVGESGCGKSTLARAI 69

		           + GESG GK  +ARA+

		Sbjct: 165 ITGESGTGKELVARAL 180

		

		

		>BCTERIALGSPD#Bacterial general secretion pathway protein D

		           signature.

		          Length = 660

		

		 Score = 31.0 bits (70), Expect = 0.014

		 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

		

		Query: 421 SGSNWTIFSSFLGAIGSFFSGSNTVSNLTFGSV--QLSTAETTGISVALVLALQSVGGAM 478

		           + S   I ++  GA      G+ + S  +  S    ++     G    L+ AL S     

		Sbjct: 379 TNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTK-- 436

		

		Query: 479 GNMVCINNIVAVSSVLNISNQEGTIIKKTIIPMI 512

		                 N+I+A  S++ + N E T      +P++

		Sbjct: 437 ------NDILATPSIVTLDNMEATFNVGQEVPVL 464

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 30.2 bits (68), Expect = 0.024

		 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 22/162 (13%)

		

		Query: 260 PSKVVSLGDTVEVMVLEIDEERRRISLG-LKQCKANPWTQFADTHNKGDKVTGKIKSITD 318

		              +     T   ++ ++  +  +I+ G L    A P  Q     N       + K+  +

		Sbjct: 190 ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL----NASIIAQTRFKNPEE 245

		

		Query: 319 FGIFIGLEGGIDGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAV------------DA 366

		           FG           +V L D++    G E      + +   A  L +             A

		Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305

		

		Query: 367 VKERISLGIKQLEED-----PFNNFVAINKKGAVVSATVVEA 403

		           +K +++       +      P++    +      V  T+ EA

		Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEA 347

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score =  107 bits (269), Expect = 2e-34

		 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

		

		Query: 2  TKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRLG 61

		           K +L+ K+ A+   L  K+    V  +   +S  L  G++V++ GFG+F +  R  R G

		Sbjct: 3  NKQDLIAKV-AEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61

		

		Query: 62 RNPKTGDSVNLSAKSVPYFKAGKELKARV 90

		          RNP+TG+ + + A  VP FKAGK LK  V

		Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 33.3 bits (76), Expect = 1e-04

		 Identities = 21/55 (38%), Positives = 29/55 (52%)

		

		Query: 52  DLSDEELKKLAAELKKRCGCGGAVKNGIIEIQGEKRDLLKQLLEQKGFKVKLSGG 106

		            LSDEELK   AE + R   G  ++N I E     R+  K++   + F V+L GG

		Sbjct: 37  KLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGG 91