| S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
| 1 | PAKAF_00001 | PAKAF_00011 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00001 | 0 | 13 | -4.339775 | chromosomal replication initiator protein DnaA | |
| PAKAF_00002 | -1 | 10 | -3.442456 | DNA polymerase III, beta chain | |
| PAKAF_00003 | -2 | 8 | -2.370125 | RecF protein | |
| PAKAF_00004 | -1 | 10 | -1.913183 | DNA gyrase subunit B | |
| PAKAF_00005 | -1 | 9 | -0.847486 | lysophosphatidic acid acyltransferase, LptA | |
| PAKAF_00006 | -1 | 8 | -1.941521 | D-glycero-beta-D-manno-heptose 1,7- bisphosphate | |
| PAKAF_00007 | -1 | 6 | -2.027518 | hypothetical protein | |
| PAKAF_00008 | -1 | 9 | -3.016707 | glycyl-tRNA synthetase beta chain | |
| PAKAF_00009 | 0 | 14 | -5.098199 | glycyl-tRNA synthetase alpha chain | |
| PAKAF_00010 | -1 | 22 | -5.414300 | DNA-3-methyladenine glycosidase I | |
| PAKAF_00011 | -2 | 14 | -4.364936 | probable 2-OH-lauroyltransferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00001 | PF03544 | 39 | 2e-05 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| 2 | PAKAF_00073 | PAKAF_00081 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00073 | 0 | 11 | 3.040910 | TagQ1 | |
| PAKAF_00074 | -1 | 11 | 3.421186 | TagR1 | |
| PAKAF_00075 | 0 | 14 | 3.817835 | TagS1 | |
| PAKAF_00076 | 0 | 15 | 3.693752 | TagT1 | |
| PAKAF_00077 | -1 | 15 | 3.427725 | serine/threonine protein kinase PpkA | |
| PAKAF_00078 | 0 | 16 | 3.514301 | PppA | |
| PAKAF_00079 | 0 | 15 | 3.617050 | TagF1 | |
| PAKAF_00080 | 0 | 15 | 3.549443 | TssM1 | |
| PAKAF_00081 | -1 | 12 | 3.470860 | TssL1 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00077 | PF03544 | 38 | 1e-04 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00081 | OMPADOMAIN | 74 | 1e-16 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| 3 | PAKAF_00103 | PAKAF_00115 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00103 | 2 | 12 | 0.189296 | Tsi7 immunity protein | |
| PAKAF_00104 | 3 | 11 | 0.003348 | TIGR02270 family protein | |
| PAKAF_00105 | 4 | 11 | -0.945042 | probable carbonic anhydrase | |
| PAKAF_00106 | 3 | 12 | -1.167356 | probable sulfate transporter | |
| PAKAF_00107 | 4 | 14 | -2.656354 | hypothetical protein | |
| PAKAF_00108 | 3 | 15 | -1.484394 | cytochrome c oxidase, subunit II | |
| PAKAF_00109 | 2 | 16 | -0.751279 | cytochrome c oxidase, subunit I | |
| PAKAF_00110 | 3 | 13 | 1.442770 | cytochrome c oxidase assembly protein | |
| PAKAF_00111 | 4 | 12 | 1.498901 | cytochrome c oxidase, subunit III | |
| PAKAF_00112 | 6 | 11 | 1.919158 | twin transmembrane helix small protein | |
| PAKAF_00113 | 6 | 11 | 1.951899 | hypothetical protein | |
| PAKAF_00114 | 5 | 12 | 1.018143 | hypothetical protein | |
| PAKAF_00115 | 2 | 11 | 1.039873 | heme A synthase |
| 4 | PAKAF_00195 | PAKAF_00206 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00195 | 2 | 16 | 1.416988 | putative NAD(P) transhydrogenase, subunit alpha | |
| PAKAF_00196 | 3 | 13 | 0.793956 | putative NAD(P) transhydrogenase, subunit alpha | |
| PAKAF_00197 | 1 | 14 | 1.606174 | pyridine nucleotide transhydrogenase, beta | |
| PAKAF_00198 | 0 | 12 | 2.550732 | TonB2 | |
| PAKAF_00199 | 2 | 12 | 2.841737 | transport protein ExbB | |
| PAKAF_00200 | 3 | 12 | 2.976611 | transport protein ExbD | |
| PAKAF_00201 | 2 | 9 | 3.499850 | DUF3079 domain-containing protein | |
| PAKAF_00202 | 2 | 10 | 4.324606 | alpha/beta hydrolase | |
| PAKAF_00210 | 3 | 10 | 4.705309 | malonate decarboxylase alpha subunit | |
| PAKAF_00203 | 2 | 11 | 6.223532 | triphosphoribosyl-dephospho-CoA synthase | |
| PAKAF_00204 | 1 | 12 | 5.422198 | malonate decarboxylase delta subunit | |
| PAKAF_00205 | 1 | 12 | 4.630390 | malonate decarboxylase beta subunit | |
| PAKAF_00206 | 0 | 11 | 3.595407 | malonate decarboxylase gamma subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00198 | PF03544 | 88 | 4e-23 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| 5 | PAKAF_00248 | PAKAF_00270 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00248 | 2 | 26 | -4.327437 | probable transcriptional regulator | |
| PAKAF_00249 | 5 | 43 | -9.317427 | UbiD family decarboxylase | |
| PAKAF_00250 | 6 | 69 | -16.534129 | hypothetical protein | |
| PAKAF_00251 | 8 | 75 | -18.150879 | DUF1275 domain-containing protein | |
| PAKAF_00252 | 8 | 82 | -20.225817 | hypothetical protein | |
| PAKAF_00253 | 8 | 89 | -22.251665 | D12 class N6 adenine-specific DNA | |
| PAKAF_00254 | 7 | 65 | -16.896713 | Uncharacterized protein conserved in | |
| PAKAF_00255 | 5 | 41 | -11.784153 | hypothetical protein | |
| PAKAF_00256 | 2 | 20 | -4.740966 | hypothetical protein | |
| PAKAF_00257 | 0 | 11 | 0.658569 | hypothetical protein | |
| PAKAF_00258 | 0 | 13 | 1.144553 | shufflon-specific recombinase | |
| PAKAF_00260 | -1 | 14 | 1.508998 | *succinate-semialdehyde dehydrogenase | |
| PAKAF_00261 | 0 | 9 | 2.041987 | 4-aminobutyrate aminotransferase | |
| PAKAF_00262 | 1 | 8 | 2.327192 | response regulator | |
| PAKAF_00263 | 2 | 12 | 3.041863 | probable transcriptional regulator | |
| PAKAF_00264 | 4 | 13 | 2.675369 | carboxymuconolactone decarboxylase family | |
| PAKAF_00265 | 6 | 12 | 2.871642 | cupin domain-containing protein | |
| PAKAF_00267 | 5 | 12 | 2.996625 | antibiotic biosynthesis monooxygenase | |
| PAKAF_00268 | 4 | 11 | 2.916348 | probable transcriptional regulator | |
| PAKAF_00269 | 4 | 11 | 3.594937 | probable major facilitator superfamily (MFS) | |
| PAKAF_00270 | 3 | 10 | 3.413720 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00262 | HTHFIS | 54 | 5e-10 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00269 | TCRTETB | 29 | 0.037 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 6 | PAKAF_00567 | PAKAF_00593 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00567 | 2 | 16 | 1.228856 | probable hydrolase | |
| PAKAF_00568 | 1 | 14 | 0.258996 | DUF805 domain-containing protein | |
| PAKAF_00569 | 0 | 13 | 1.354018 | probable transcriptional regulator | |
| PAKAF_00570 | 0 | 14 | 0.729082 | carboxymuconolactone decarboxylase family | |
| PAKAF_00571 | 0 | 13 | 1.507491 | hypothetical protein | |
| PAKAF_00572 | 0 | 9 | 0.684576 | YqaE/Pmp3 family membrane protein | |
| PAKAF_00573 | 1 | 9 | 0.370039 | hypothetical protein | |
| PAKAF_00574 | 2 | 13 | -0.791545 | hypothetical protein | |
| PAKAF_00575 | 0 | 11 | -0.723250 | SMI1/KNR4 family protein | |
| PAKAF_00576 | -2 | 10 | -1.433511 | DUF4375 domain-containing protein | |
| PAKAF_00577 | -2 | 9 | -1.656829 | hypothetical protein | |
| PAKAF_00578 | 0 | 12 | -2.158898 | NERD domain-containing protein | |
| PAKAF_00579 | 0 | 13 | -2.121668 | Fic family protein | |
| PAKAF_00581 | 0 | 12 | -1.256161 | *bifunctional diguanylate cyclase/ | |
| PAKAF_00582 | 2 | 10 | -1.425324 | sigma factor RpoD | |
| PAKAF_00583 | 1 | 9 | -0.211904 | DNA primase | |
| PAKAF_00584 | 0 | 11 | 0.290101 | GatB/YqeY domain-containing protein | |
| PAKAF_00585 | 1 | 11 | 0.687021 | 30S ribosomal protein S21 | |
| PAKAF_00586 | 0 | 10 | 1.151367 | O-sialoglycoprotein endopeptidase | |
| PAKAF_00587 | 0 | 8 | -1.107937 | glycerol-3-phosphate acyltransferase PlsY | |
| PAKAF_00588 | 0 | 9 | -2.008429 | dihydroneopterin aldolase | |
| PAKAF_00589 | 0 | 11 | -3.476003 | 2-amino-4-hydroxy-6- | |
| PAKAF_00590 | 0 | 13 | -3.395969 | tRNA nucleotidyl transferase | |
| PAKAF_00591 | 0 | 14 | -3.808338 | DUF4136 domain-containing protein | |
| PAKAF_00592 | 0 | 14 | -3.940449 | SpoVR family protein | |
| PAKAF_00593 | 0 | 13 | -3.073594 | YeaH/YhbH family protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00573 | DNABINDINGHU | 27 | 0.009 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| 7 | PAKAF_00612 | PAKAF_00635 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00612 | 2 | 11 | -1.997660 | probable permease of ABC transporter | |
| PAKAF_00613 | 2 | 11 | -2.040155 | ribulose-phosphate 3-epimerase | |
| PAKAF_00614 | 0 | 11 | -1.453255 | probable phosphoglycolate phosphatase | |
| PAKAF_00615 | 0 | 12 | -1.765820 | anthranilate synthetase component I | |
| PAKAF_00616 | 1 | 16 | -0.036238 | transcriptional regulator PrtN | |
| PAKAF_00617 | 0 | 17 | 0.233570 | transcriptional regulator PrtR | |
| PAKAF_00618 | 0 | 22 | 0.947355 | hypothetical protein | |
| PAKAF_00619 | 1 | 21 | 0.858375 | repressor, PtrB | |
| PAKAF_00620 | 2 | 24 | 0.089251 | hypothetical protein | |
| PAKAF_00621 | 0 | 24 | 0.028195 | holin | |
| PAKAF_00622 | 2 | 33 | -3.322331 | hypothetical protein | |
| PAKAF_00623 | 2 | 28 | -3.411897 | phage baseplate assembly protein V | |
| PAKAF_00624 | 1 | 28 | -3.958791 | probable bacteriophage protein | |
| PAKAF_00625 | 1 | 28 | -3.928500 | probable bacteriophage protein | |
| PAKAF_00626 | -1 | 30 | -3.178161 | probable bacteriophage protein | |
| PAKAF_00627 | -1 | 28 | -2.866165 | probable bacteriophage protein | |
| PAKAF_00628 | -1 | 22 | -1.356413 | probable bacteriophage protein | |
| PAKAF_00629 | 0 | 25 | -1.013713 | probable bacteriophage protein | |
| PAKAF_00630 | 1 | 25 | -0.245995 | phage tail assembly protein | |
| PAKAF_00631 | 1 | 26 | 0.137851 | phage tail length determinator protein | |
| PAKAF_00632 | 2 | 23 | 0.816626 | phage tail protein | |
| PAKAF_00633 | 1 | 30 | 0.451340 | conserved hypothetical protein | |
| PAKAF_00634 | 1 | 26 | 0.091136 | phage late control D family protein | |
| PAKAF_00635 | 3 | 25 | 0.025428 | glycoside hydrolase family 19 protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00631 | PF07132 | 32 | 0.011 | Harpin protein (HrpN) | |
>PF07132#Harpin protein (HrpN) | |||||
| 8 | PAKAF_00644 | PAKAF_00653 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00644 | 2 | 20 | -2.855002 | probable bacteriophage protein | |
| PAKAF_00645 | 2 | 23 | -3.404899 | peptidase P60 | |
| PAKAF_00646 | 1 | 22 | -3.973144 | probable bacteriophage protein | |
| PAKAF_00647 | 1 | 20 | -3.766098 | probable bacteriophage protein | |
| PAKAF_00648 | 0 | 26 | -5.909797 | hypothetical protein | |
| PAKAF_00649 | 0 | 16 | -4.189741 | tail fiber protein | |
| PAKAF_00650 | 1 | 9 | -2.710573 | hypothetical protein | |
| PAKAF_00651 | 3 | 8 | -3.414928 | anthranilate synthase component II,Anthranilate | |
| PAKAF_00652 | 2 | 6 | -3.044706 | anthranilate | |
| PAKAF_00653 | 2 | 9 | -3.290879 | indole-3-glycerol-phosphate |
| 9 | PAKAF_00791 | PAKAF_00800 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00791 | 2 | 10 | 0.705257 | NAD(P)/FAD-dependent oxidoreductase | |
| PAKAF_00792 | 2 | 11 | 0.498547 | Rrf2 family transcriptional regulator | |
| PAKAF_00793 | 2 | 10 | 1.591400 | second ferric pyoverdine receptor FpvB | |
| PAKAF_00794 | 2 | 11 | 2.985207 | probable oxidoreductase | |
| PAKAF_00795 | 0 | 12 | 4.400236 | probable acetyltransferase | |
| PAKAF_00796 | 0 | 11 | 5.455942 | probable transcriptional regulator | |
| PAKAF_00797 | 0 | 10 | 5.283625 | hypothetical protein | |
| PAKAF_00798 | 1 | 9 | 5.289847 | hypothetical protein | |
| PAKAF_00799 | 3 | 11 | 5.413996 | probable short-chain dehydrogenase | |
| PAKAF_00800 | -2 | 9 | 3.704405 | ferric enterobactin transport protein FepG |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00795 | SACTRNSFRASE | 41 | 5e-07 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00799 | DHBDHDRGNASE | 119 | 6e-35 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 10 | PAKAF_01074 | PAKAF_01084 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01074 | 2 | 13 | 0.061612 | HlyD family secretion protein | |
| PAKAF_01075 | 2 | 13 | 0.117661 | probable ATP-binding component of ABC | |
| PAKAF_01076 | 1 | 10 | 0.945521 | probable permease of ABC transporter | |
| PAKAF_01077 | 0 | 10 | 1.348275 | probable binding protein component of ABC | |
| PAKAF_01078 | 2 | 10 | 1.882840 | probable permease of ABC transporter | |
| PAKAF_01079 | 1 | 9 | 2.710957 | Na+/H+ antiporter NhaP | |
| PAKAF_01081 | 1 | 14 | 3.669093 | amino acid transporter | |
| PAKAF_01082 | 0 | 15 | 3.873921 | TIGR01459 family HAD-type hydrolase | |
| PAKAF_01083 | 1 | 14 | 3.797827 | protein tyrosine phosphatase TpbA | |
| PAKAF_01084 | 0 | 14 | 3.192359 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01074 | RTXTOXIND | 50 | 6e-09 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 11 | PAKAF_01150 | PAKAF_01159 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01150 | 1 | 17 | -3.452491 | probable methyltransferase | |
| PAKAF_01151 | 2 | 19 | -3.076364 | O-acetylserine synthase | |
| PAKAF_01152 | 1 | 14 | -1.887920 | IscR | |
| PAKAF_01153 | 2 | 13 | -1.999980 | L-cysteine desulfurase (pyridoxal | |
| PAKAF_01154 | 2 | 14 | -1.936261 | probable iron-binding protein IscU | |
| PAKAF_01155 | 3 | 16 | -1.996689 | probable iron-binding protein IscA | |
| PAKAF_01156 | 2 | 16 | -2.553509 | heat shock protein HscB | |
| PAKAF_01157 | 1 | 16 | -2.792444 | heat shock protein HscA | |
| PAKAF_01158 | 1 | 17 | -3.248003 | ferredoxin (2Fe-2S) | |
| PAKAF_01159 | 2 | 16 | -2.833962 | Fe-S cluster assembly protein IscX |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01150 | PHAGEIV | 30 | 0.018 | Gene IV protein signature. | |
>PHAGEIV#Gene IV protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01157 | SHAPEPROTEIN | 107 | 1e-27 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| 12 | PAKAF_01172 | PAKAF_01200 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01172 | 2 | 9 | -1.522938 | probable oxidoreductase | |
| PAKAF_01173 | 0 | 9 | -0.696066 | hypothetical protein | |
| PAKAF_01174 | -1 | 9 | -0.284969 | hypothetical protein | |
| PAKAF_01175 | -1 | 9 | -0.077376 | 2-isopropylmalate synthase | |
| PAKAF_01176 | -3 | 8 | 1.167703 | hypothetical protein | |
| PAKAF_01177 | -1 | 8 | 1.287454 | Putative copper transport outer membrane porin | |
| PAKAF_01178 | 2 | 9 | 2.052377 | PepSY domain-containing protein | |
| PAKAF_01179 | 2 | 13 | 1.749946 | DUF4345 domain-containing protein | |
| PAKAF_01180 | 2 | 11 | 2.039571 | M23 family metallopeptidase | |
| PAKAF_01181 | 2 | 13 | 1.426950 | DUF2946 domain-containing protein | |
| PAKAF_01182 | 2 | 11 | 1.157606 | copper chaperone PCu(A)C | |
| PAKAF_01183 | 2 | 11 | 1.286904 | putative natural product biosynthesis protein | |
| PAKAF_01184 | 1 | 12 | 1.418358 | cysteine hydrolase | |
| PAKAF_01185 | 0 | 10 | 2.168314 | probable transcriptional regulator | |
| PAKAF_01187 | 0 | 11 | 2.120953 | probable transporter | |
| PAKAF_01188 | 1 | 10 | 2.758822 | TRAP transporter small permease | |
| PAKAF_01189 | 1 | 9 | 2.868306 | TRAP transporter substrate-binding protein DctP | |
| PAKAF_01190 | 1 | 10 | 3.474122 | probable transcriptional regulator | |
| PAKAF_01191 | 1 | 10 | 3.099257 | exodeoxyribonuclease VII large subunit | |
| PAKAF_01192 | 0 | 10 | 2.416109 | probable transcriptional regulator | |
| PAKAF_01193 | -2 | 11 | 1.707083 | sulfite exporter TauE/SafE family protein | |
| PAKAF_01194 | -1 | 14 | 1.119506 | probable acetylpolyamine aminohydrolase | |
| PAKAF_01195 | 0 | 12 | -2.777127 | MFS transporter | |
| PAKAF_01196 | 1 | 12 | -3.577102 | transporter | |
| PAKAF_01197 | 2 | 16 | -4.025580 | probable transcriptional regulator | |
| PAKAF_01198 | 3 | 18 | -4.505887 | inosine-5'-monophosphate dehydrogenase | |
| PAKAF_01199 | 3 | 24 | -5.032770 | GMP synthase,GMP synthase | |
| PAKAF_01200 | 3 | 28 | -4.921632 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01184 | ISCHRISMTASE | 31 | 0.004 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01187 | RTXTOXINA | 33 | 0.004 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| 13 | PAKAF_01304 | PAKAF_01331 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01304 | 2 | 7 | 1.600078 | ABC transporter auxiliary component | |
| PAKAF_01305 | 3 | 11 | 1.890877 | DUF4340 domain-containing protein | |
| PAKAF_01306 | 3 | 13 | 1.718532 | SufE family protein | |
| PAKAF_01307 | 1 | 12 | 1.270033 | probable pyridoxal-phosphate dependent enzyme | |
| PAKAF_01308 | 1 | 13 | 0.036342 | tetrahydrodipicolinate succinylase | |
| PAKAF_01309 | 2 | 9 | 0.228777 | LysE family translocator | |
| PAKAF_01310 | -2 | 9 | 0.195047 | ArsC family reductase | |
| PAKAF_01311 | -1 | 9 | -0.721704 | YkgJ family cysteine cluster protein | |
| PAKAF_01312 | 0 | 10 | -1.263331 | hypothetical protein | |
| PAKAF_01313 | -1 | 10 | -1.660542 | hypothetical protein | |
| PAKAF_01314 | -2 | 11 | -2.112134 | probable sodium/hydrogen antiporter | |
| PAKAF_01315 | 0 | 13 | -2.774042 | probable aminotransferase | |
| PAKAF_01316 | 0 | 13 | -3.754414 | protein-PII uridylyltransferase | |
| PAKAF_01317 | 2 | 15 | -4.025413 | methionine aminopeptidase | |
| PAKAF_01319 | 1 | 14 | -2.862226 | 30S ribosomal protein S2 | |
| PAKAF_01320 | 1 | 9 | -1.436937 | elongation factor Ts | |
| PAKAF_01321 | 0 | 12 | -0.842082 | uridylate kinase | |
| PAKAF_01322 | -2 | 9 | -1.778300 | ribosome recycling factor | |
| PAKAF_01323 | -1 | 8 | -1.983833 | undecaprenyl pyrophosphate synthetase | |
| PAKAF_01324 | -1 | 9 | -2.080590 | phosphatidate cytidylyltransferase | |
| PAKAF_01325 | 0 | 9 | -2.942501 | 1-deoxy-d-xylulose 5-phosphate reductoisomerase | |
| PAKAF_01326 | 1 | 11 | -3.678034 | MucP | |
| PAKAF_01327 | 1 | 11 | -3.313639 | outer membrane protein Opr86 | |
| PAKAF_01328 | 3 | 13 | -2.389298 | probable outer membrane protein precursor | |
| PAKAF_01329 | 3 | 11 | -1.906070 | UDP-3-O-[3-hydroxylauroyl] glucosamine | |
| PAKAF_01330 | 1 | 10 | -2.146704 | (3R)-hydroxymyristoyl-[acyl carrier protein] | |
| PAKAF_01331 | 2 | 10 | -1.943307 | UDP-N-acetylglucosamine acyltransferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01308 | FERRIBNDNGPP | 31 | 0.006 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01316 | YERSSTKINASE | 32 | 0.014 | Yersinia serine/threonine protein kinase signature. | |
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01321 | CARBMTKINASE | 37 | 3e-05 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| 14 | PAKAF_01407 | PAKAF_01417 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01407 | -1 | 11 | 3.315183 | 3-hydroxyisobutyrate dehydrogenase | |
| PAKAF_01408 | -1 | 11 | 3.172141 | probable acetyl-coa synthetase | |
| PAKAF_01409 | 0 | 11 | 4.310821 | probable oxidoreductase | |
| PAKAF_01410 | 0 | 11 | 4.696411 | antibiotic biosynthesis monooxygenase | |
| PAKAF_01411 | -1 | 11 | 4.949886 | probable transcriptional regulator | |
| PAKAF_01413 | -1 | 11 | 4.123971 | TatD family deoxyribonuclease | |
| PAKAF_01414 | 0 | 10 | 4.045354 | fructose transport system repressor FruR | |
| PAKAF_01415 | 0 | 10 | 4.204365 | phosphotransferase system transporter enzyme I, | |
| PAKAF_01416 | 2 | 11 | 3.232802 | 1-phosphofructokinase | |
| PAKAF_01417 | 1 | 14 | 3.123991 | phosphotransferase system transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01415 | PHPHTRNFRASE | 610 | 0.0 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| 15 | PAKAF_01553 | PAKAF_01577 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01553 | -1 | 12 | 3.538768 | DUF1329 domain-containing protein | |
| PAKAF_01554 | 0 | 11 | 4.428671 | probable transcriptional regulator | |
| PAKAF_01555 | -1 | 10 | 4.096229 | hypothetical protein | |
| PAKAF_01556 | -1 | 11 | 4.309976 | leucine dehydrogenase | |
| PAKAF_01557 | -2 | 10 | 3.782597 | probable pyruvate dehydrogenase E1 component, | |
| PAKAF_01558 | -2 | 10 | 3.516219 | probable pyruvate dehydrogenase E1 component, | |
| PAKAF_01559 | -1 | 12 | 3.493922 | probable dihydrolipoamide acetyltransferase | |
| PAKAF_01560 | 2 | 14 | 2.031949 | Protein of unknown function (DUF2809) | |
| PAKAF_01561 | 0 | 12 | 3.365477 | hypothetical protein | |
| PAKAF_01562 | 0 | 11 | 1.725464 | conserved hypothetical protein | |
| PAKAF_01563 | 1 | 11 | 2.040905 | DUF2790 domain-containing protein | |
| PAKAF_01564 | 0 | 12 | 2.987825 | hypothetical protein | |
| PAKAF_01565 | 1 | 11 | 3.224190 | HasI | |
| PAKAF_01566 | 2 | 11 | 3.553857 | HasS | |
| PAKAF_01567 | 2 | 12 | 2.834845 | heme uptake outer membrane receptor HasR | |
| PAKAF_01568 | 1 | 14 | 3.497981 | heme acquisition protein HasAp | |
| PAKAF_01569 | 1 | 14 | 3.098247 | transport protein HasD | |
| PAKAF_01570 | 2 | 14 | 1.637402 | metalloprotease secretion protein | |
| PAKAF_01571 | 2 | 15 | 0.992899 | probable outer membrane protein precursor | |
| PAKAF_01572 | 1 | 15 | 0.333604 | phosphate-starvation-inducible protein PsiE | |
| PAKAF_01573 | 1 | 16 | 0.051477 | biotin/lipoyl-binding protein | |
| PAKAF_01574 | 2 | 16 | 0.149579 | ABC transporter permease | |
| PAKAF_01575 | 3 | 17 | 1.068475 | putative ABC-type multidrug transport system, | |
| PAKAF_01576 | 2 | 15 | 2.689649 | YceK/YidQ family lipoprotein | |
| PAKAF_01577 | 2 | 18 | 2.414316 | probable transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01556 | DHBDHDRGNASE | 28 | 0.032 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01568 | PF06438 | 276 | 1e-97 | Heme acquisition protein HasAp | |
>PF06438#Heme acquisition protein HasAp | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01570 | RTXTOXIND | 417 | e-145 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01571 | RTXTOXIND | 32 | 0.007 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01573 | RTXTOXIND | 56 | 6e-11 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01575 | ABC2TRNSPORT | 28 | 0.039 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| 16 | PAKAF_01604 | PAKAF_01616 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01604 | 4 | 27 | -4.542364 | phosphonate metabolism protein PhnP | |
| PAKAF_01605 | 5 | 26 | -3.792232 | hypothetical protein | |
| PAKAF_01606 | 5 | 35 | -6.865733 | hypothetical protein | |
| PAKAF_01607 | 4 | 29 | -6.418595 | hypothetical protein | |
| PAKAF_01608 | 4 | 27 | -5.501062 | probable acetyltransferase | |
| PAKAF_01610 | 4 | 24 | -5.154622 | *hypothetical protein | |
| PAKAF_01611 | 2 | 18 | -3.482671 | sugar-binding protein | |
| PAKAF_01612 | -1 | 23 | -4.851895 | hypothetical protein | |
| PAKAF_01613 | -1 | 11 | -0.948301 | aliphatic amidase | |
| PAKAF_01614 | -1 | 9 | 0.556720 | probable chaperone | |
| PAKAF_01615 | 1 | 10 | -0.383008 | aliphatic amidase expression-regulating protein | |
| PAKAF_01616 | 3 | 10 | 0.477905 | aliphatic amidase regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01608 | SACTRNSFRASE | 56 | 5e-12 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01614 | HTHFIS | 39 | 3e-05 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 17 | PAKAF_01687 | PAKAF_01701 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01687 | 4 | 27 | -4.287288 | probable HIT family protein | |
| PAKAF_01688 | 4 | 27 | -4.037732 | VgrG4a | |
| PAKAF_01689 | 7 | 37 | -5.579366 | DUF4123 domain-containing protein | |
| PAKAF_05919 | 6 | 38 | -5.982364 | Tli1 | |
| PAKAF_05920 | 3 | 24 | -3.869548 | Tli1 | |
| PAKAF_01690 | 1 | 18 | -2.499073 | Tle1 | |
| PAKAF_01691 | -2 | 12 | -0.305457 | hypothetical protein | |
| PAKAF_01692 | -2 | 13 | -0.486700 | cysteine hydrolase family protein | |
| PAKAF_01693 | -1 | 14 | -0.479872 | ankyrin repeat domain-containing protein | |
| PAKAF_01694 | 0 | 13 | -0.988846 | 3-oxoacyl-(acyl carrier protein) synthase III | |
| PAKAF_01695 | 0 | 13 | -1.862130 | probable sigma-70 factor, ECF subfamily | |
| PAKAF_01697 | 2 | 14 | -2.211357 | hypothetical protein | |
| PAKAF_01698 | 2 | 13 | -2.099610 | DUF692 family protein | |
| PAKAF_01699 | 1 | 12 | -2.350249 | DUF2063 domain-containing protein | |
| PAKAF_01700 | 2 | 11 | -2.568331 | DoxX family protein | |
| PAKAF_01701 | 2 | 12 | -2.473079 | Pyrophosphate-specific outer membrane porin OprO |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01692 | ISCHRISMTASE | 28 | 0.013 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| 18 | PAKAF_01774 | PAKAF_01785 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01774 | 2 | 10 | 1.488107 | probable permease of ABC transporter | |
| PAKAF_01775 | 2 | 12 | 1.467469 | potassium uptake protein TrkH | |
| PAKAF_01776 | 2 | 13 | 3.100864 | YkgJ family cysteine cluster protein | |
| PAKAF_01777 | 3 | 14 | 3.057135 | nitroreductase | |
| PAKAF_01778 | 3 | 15 | 2.527221 | hypothetical protein | |
| PAKAF_01779 | 2 | 16 | 0.690112 | probable two-component sensor | |
| PAKAF_01780 | 1 | 13 | 0.282899 | hypothetical protein | |
| PAKAF_01781 | 0 | 14 | 0.247557 | two-component response regulator CpxR | |
| PAKAF_01782 | 1 | 14 | -0.525603 | hypothetical protein | |
| PAKAF_01783 | 3 | 11 | 0.057326 | YciI family protein | |
| PAKAF_01784 | 2 | 11 | -0.450027 | putative intracellular septation protein A | |
| PAKAF_01785 | 2 | 13 | 0.312705 | PHP domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01779 | PF06580 | 29 | 0.026 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01781 | HTHFIS | 103 | 9e-28 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01782 | IGASERPTASE | 28 | 0.010 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01783 | adhesinmafb | 30 | 9e-04 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| 19 | PAKAF_01813 | PAKAF_01836 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01813 | 2 | 12 | -0.046427 | probable short-chain dehydrogenase | |
| PAKAF_01814 | 2 | 10 | -0.452636 | probable hydrolase | |
| PAKAF_01815 | 2 | 10 | -1.026611 | 3-demethylubiquinone-9 3-methyltransferase | |
| PAKAF_01816 | 1 | 9 | -0.924256 | TRZ/ATZ family hydrolase | |
| PAKAF_01817 | 1 | 11 | -1.071564 | 5-methylthioribose-1-phosphate isomerase MtnA | |
| PAKAF_01819 | 1 | 12 | -1.179258 | DNA gyrase subunit A | |
| PAKAF_01820 | 1 | 13 | -2.497615 | 3-phosphoserine aminotransferase | |
| PAKAF_01821 | 3 | 15 | -2.529461 | chorismate mutase | |
| PAKAF_01822 | 2 | 23 | -4.491212 | histidinol-phosphate aminotransferase | |
| PAKAF_01823 | 3 | 33 | -7.512429 | bifunctional prephenate | |
| PAKAF_01824 | 4 | 51 | -12.420883 | cytidylate kinase | |
| PAKAF_01825 | 4 | 62 | -15.183070 | 30S ribosomal protein S1 | |
| PAKAF_01826 | 5 | 78 | -16.995623 | integration host factor beta subunit | |
| PAKAF_01827 | 4 | 80 | -16.853306 | O-antigen chain length regulator,Polysaccharide | |
| PAKAF_01828 | 4 | 79 | -16.541156 | UDP-glucose/GDP-mannose dehydrogenase-like | |
| PAKAF_01829 | 4 | 78 | -15.331650 | wbpP,dTDP-glucose 4,6-dehydratase,Vi | |
| PAKAF_01830 | 4 | 74 | -13.700263 | colanic acid exporter,Polysaccharide | |
| PAKAF_01831 | 3 | 69 | -11.832990 | WbpR,sugar transferase, PEP-CTERM/EpsH1 system | |
| PAKAF_01832 | 3 | 55 | -9.701857 | asparagine synthase-like protein,Asparagine | |
| PAKAF_01833 | 2 | 49 | -8.056302 | glycosyl transferase-like protein,Spore coat | |
| PAKAF_01834 | 1 | 35 | -5.797104 | glycosyl transferase-like protein,Capsular | |
| PAKAF_01835 | 0 | 22 | -4.206802 | NAD dependent epimerase/dehydratase family-like | |
| PAKAF_01836 | -1 | 16 | -3.464148 | putative group 4 glycosyl |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01813 | DHBDHDRGNASE | 91 | 4e-24 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01816 | UREASE | 37 | 2e-04 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01826 | DNABINDINGHU | 118 | 1e-38 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01829 | NUCEPIMERASE | 257 | 2e-86 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01831 | PF07520 | 29 | 0.042 | Virulence protein SrfB | |
>PF07520#Virulence protein SrfB | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01835 | NUCEPIMERASE | 66 | 3e-14 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 20 | PAKAF_01962 | PAKAF_02010 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01962 | 2 | 8 | 0.090003 | lipid kinase YegS | |
| PAKAF_01963 | 1 | 8 | -0.394078 | MOSC domain-containing protein | |
| PAKAF_01964 | 2 | 9 | -0.534112 | lysozyme inhibitor LprI family protein | |
| PAKAF_01965 | 2 | 8 | -0.811034 | probable soluble lytic transglycosylase | |
| PAKAF_01966 | 1 | 8 | -2.067095 | probable ATP-binding component of ABC | |
| PAKAF_01967 | 0 | 10 | -2.641170 | hypothetical protein | |
| PAKAF_01968 | 0 | 11 | -2.810194 | universal stress protein | |
| PAKAF_01969 | 0 | 10 | -3.033626 | hypothetical protein | |
| PAKAF_01970 | 1 | 10 | -3.409811 | hypothetical protein | |
| PAKAF_01971 | 2 | 11 | -3.605754 | fatty-acid oxidation complex alpha-subunit | |
| PAKAF_01972 | 0 | 12 | -3.085404 | fatty-acid oxidation complex beta-subunit | |
| PAKAF_01973 | 2 | 11 | -3.049840 | DUF1653 domain-containing protein | |
| PAKAF_01974 | 2 | 8 | -2.705267 | DNA topoisomerase I | |
| PAKAF_01975 | 4 | 15 | -1.289938 | hypothetical protein | |
| PAKAF_01976 | 4 | 15 | -0.573645 | hypothetical protein | |
| PAKAF_01977 | 3 | 14 | -0.049918 | cell division inhibitor SulA | |
| PAKAF_01978 | 1 | 8 | -0.004047 | repressor protein LexA | |
| PAKAF_01979 | 0 | 8 | -0.522053 | transcriptional regulator PsrA | |
| PAKAF_01980 | 0 | 8 | -1.033219 | beta-N-acetyl-D-glucosaminidase | |
| PAKAF_01981 | -1 | 8 | -1.381718 | 5-methylthioadenosine phosphorylase MtnP | |
| PAKAF_01982 | 0 | 9 | -1.661235 | hypothetical protein | |
| PAKAF_01983 | 0 | 8 | -1.759201 | transcription-repair coupling protein Mfd | |
| PAKAF_01984 | 2 | 10 | -2.878733 | probable glyceraldehyde-3-phosphate | |
| PAKAF_01985 | 1 | 10 | -2.855673 | aromatic amino acid transport protein AroP1 | |
| PAKAF_01986 | 0 | 9 | -2.465711 | Na+-translocating NADH:ubiquinone oxidoreductase | |
| PAKAF_01987 | 0 | 10 | -2.256405 | Na+-translocating NADH:ubiquinone oxidoreductase | |
| PAKAF_01988 | 0 | 12 | -2.439701 | Na+-translocating NADH:ubiquinone oxidoreductase | |
| PAKAF_01989 | 1 | 12 | -3.122232 | Na+-translocating NADH:uniquinone oxidoreductase | |
| PAKAF_01990 | 1 | 11 | -2.381870 | Na+-translocating NADH:quinone oxidoreductase | |
| PAKAF_01991 | 2 | 10 | -1.888071 | Na+-translocating NADH:quinone oxidoreductase, | |
| PAKAF_01992 | 2 | 10 | -1.808977 | FAD:protein FMN transferase | |
| PAKAF_01993 | 1 | 11 | -2.566764 | (Na+)-NQR maturation NqrM | |
| PAKAF_01994 | 0 | 11 | -1.922035 | soluble pyridine nucleotide transhydrogenase | |
| PAKAF_01995 | 0 | 12 | -1.567214 | probable phosphodiesterase | |
| PAKAF_01996 | 2 | 13 | -2.032512 | phosphodiesterase | |
| PAKAF_01997 | 2 | 15 | 0.070845 | hypothetical protein | |
| PAKAF_01998 | 3 | 14 | 0.142456 | lipoprotein localisation protein, LolE | |
| PAKAF_01999 | 3 | 15 | 0.666923 | lipoprotein localisation protein, LolD | |
| PAKAF_02000 | 3 | 16 | 0.811691 | lipoprotein localisation protein, LolC | |
| PAKAF_02001 | 3 | 17 | 1.561409 | DUF2062 domain-containing protein | |
| PAKAF_02002 | 2 | 17 | 1.897570 | DNA internalization-related competence protein | |
| PAKAF_02003 | 2 | 13 | -0.246128 | probable tolQ-type transport protein | |
| PAKAF_02004 | 1 | 17 | -0.061614 | biopolymer transporter ExbD | |
| PAKAF_02005 | 4 | 17 | 0.435331 | tetraacyldisaccharide 4*-kinase | |
| PAKAF_02006 | 4 | 18 | 0.000138 | Trm112 family protein | |
| PAKAF_02007 | 4 | 17 | -0.041156 | 3-deoxy-manno-octulosonate cytidylyltransferase | |
| PAKAF_02008 | 3 | 15 | -0.658279 | phosphotyrosine protein phosphatase | |
| PAKAF_02009 | 4 | 14 | -0.570175 | UDP-N-acetylpyruvoylglucosamine reductase | |
| PAKAF_02010 | 3 | 15 | -0.954068 | ribonuclease E |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01966 | RTXTOXIND | 33 | 0.003 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01968 | SHAPEPROTEIN | 27 | 0.019 | Bacterial cell shape determinant MreB/Mbl protein s... | |
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01979 | HTHTETR | 68 | 3e-16 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02005 | ENTSNTHTASED | 29 | 0.022 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02010 | IGASERPTASE | 59 | 9e-11 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 21 | PAKAF_02031 | PAKAF_02045 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02031 | 2 | 15 | -1.874304 | B12-binding domain-containing radical SAM | |
| PAKAF_02032 | 3 | 16 | -1.987258 | DUF4823 domain-containing protein | |
| PAKAF_02033 | 3 | 16 | -1.786453 | DUF1285 domain-containing protein | |
| PAKAF_02034 | 2 | 16 | -1.455092 | electron transfer flavoprotein-ubiquinone | |
| PAKAF_02035 | 2 | 15 | -0.421584 | electron transfer flavoprotein beta-subunit | |
| PAKAF_02036 | 0 | 13 | 1.058362 | electron transfer flavoprotein alpha-subunit | |
| PAKAF_02037 | 0 | 10 | 1.117784 | FabV | |
| PAKAF_02038 | -2 | 5 | 2.815902 | probable lipase | |
| PAKAF_02039 | -2 | 5 | 3.199271 | precorrin-3 methylase | |
| PAKAF_02040 | -2 | 4 | 3.479014 | CobE | |
| PAKAF_02041 | -2 | 5 | 3.521827 | CbtA family protein | |
| PAKAF_02045 | -2 | 6 | 3.202779 | cobalamin biosynthesis protein CobW |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02035 | ALARACEMASE | 28 | 0.045 | Alanine racemase signature. | |
>ALARACEMASE#Alanine racemase signature. | |||||
| 22 | PAKAF_02075 | PAKAF_02099 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02075 | 1 | 12 | 3.854250 | probable transcriptional regulator | |
| PAKAF_02076 | 1 | 14 | 2.890364 | LysE family translocator | |
| PAKAF_02077 | 0 | 14 | 2.532122 | MBL fold metallo-hydrolase | |
| PAKAF_02078 | 0 | 14 | 3.315390 | probable permease of ABC transporter | |
| PAKAF_02079 | -2 | 15 | 3.196206 | ABC transporter substrate-binding protein | |
| PAKAF_02080 | -1 | 15 | 3.812875 | probable ATP-binding component of ABC | |
| PAKAF_02081 | -1 | 12 | 4.048542 | probable TonB-dependent receptor | |
| PAKAF_02083 | 2 | 10 | 5.609654 | UPF0059 membrane protein | |
| PAKAF_02084 | 0 | 10 | 5.558758 | cobalt-precorrin-6A reductase | |
| PAKAF_02085 | 1 | 10 | 5.334302 | cobalamin biosynthetic protein CbiD | |
| PAKAF_02086 | -1 | 10 | 4.611450 | precorrin-6y-dependent methyltransferase CobL | |
| PAKAF_02088 | -1 | 12 | 3.698020 | probable oxidoreductase | |
| PAKAF_02089 | -1 | 10 | 2.531850 | precorrin isomerase CobH | |
| PAKAF_02090 | 1 | 11 | 1.785146 | precorrin-2 methyltransferase CobI | |
| PAKAF_02091 | 2 | 11 | 2.044613 | precorrin-3 methylase CobJ | |
| PAKAF_02092 | 1 | 12 | 0.379572 | transporter substrate-binding domain-containing | |
| PAKAF_02093 | 1 | 12 | 0.497931 | DUF4398 domain-containing protein | |
| PAKAF_02094 | 0 | 12 | 1.591457 | probable outer membrane protein precursor | |
| PAKAF_02095 | 2 | 12 | 1.461070 | probable transcriptional regulator | |
| PAKAF_02096 | 1 | 10 | 1.090725 | SbrI | |
| PAKAF_02097 | 0 | 9 | 1.130127 | SbrR | |
| PAKAF_02098 | 1 | 9 | 2.374310 | probable sigma-70 factor, ECF subfamily | |
| PAKAF_02099 | 2 | 10 | 2.834679 | anti-sigma factor SbrR |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02075 | PF05272 | 28 | 0.034 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02077 | PF05932 | 27 | 0.049 | Tir chaperone protein (CesT) | |
>PF05932#Tir chaperone protein (CesT) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02079 | FERRIBNDNGPP | 40 | 8e-06 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02094 | OMPADOMAIN | 102 | 2e-27 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02095 | HTHFIS | 50 | 1e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02099 | IGASERPTASE | 36 | 1e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 23 | PAKAF_02108 | PAKAF_02121 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02108 | 2 | 11 | 1.429042 | expressed protein with apparent function in | |
| PAKAF_02109 | 3 | 13 | 0.571076 | putative repressor of atu genes | |
| PAKAF_02110 | 1 | 12 | 1.286683 | CPBP family intramembrane metalloprotease | |
| PAKAF_02111 | 1 | 12 | 1.405116 | DUF2897 family protein | |
| PAKAF_02112 | -1 | 10 | 1.690233 | probable two-component sensor | |
| PAKAF_02113 | -1 | 10 | 1.922038 | probable two-component response regulator | |
| PAKAF_02114 | -1 | 8 | 1.831314 | multidrug/biocide efflux PACE transporter | |
| PAKAF_02115 | 0 | 10 | 2.939652 | probable transcriptional regulator | |
| PAKAF_02116 | 1 | 12 | 2.647818 | hypothetical protein | |
| PAKAF_02117 | 3 | 14 | 3.194314 | probable transcriptional regulator | |
| PAKAF_02118 | 1 | 14 | 3.233581 | orotidine 5'-phosphate decarboxylase | |
| PAKAF_02119 | 2 | 12 | 2.968818 | AAA family ATPase | |
| PAKAF_02120 | 2 | 12 | 2.760963 | DUF58 domain-containing protein | |
| PAKAF_02121 | 2 | 11 | 2.170399 | transglutaminase protein A, TgpA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02109 | HTHTETR | 70 | 4e-17 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02112 | PF06580 | 45 | 2e-07 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02113 | HTHFIS | 98 | 5e-25 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02119 | HTHFIS | 32 | 0.003 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 24 | PAKAF_02172 | PAKAF_02237 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02172 | 2 | 21 | -3.653176 | conserved hypothetical protein | |
| PAKAF_02173 | 1 | 30 | -5.502723 | GAF domain-containing protein | |
| PAKAF_02174 | 1 | 36 | -6.842672 | probable glutathione S-transferase | |
| PAKAF_02175 | 0 | 43 | -8.556674 | hypothetical protein | |
| PAKAF_02179 | 0 | 48 | -9.168253 | ***integrase,Putative prophage CPS-53 | |
| PAKAF_02180 | 2 | 56 | -9.591765 | Cro/Ci family transcriptional | |
| PAKAF_02181 | 3 | 57 | -9.728305 | transcriptional regulator, LysR family,Hca | |
| PAKAF_02182 | 2 | 58 | -10.309083 | LysR family transcriptional regulator,D-malate | |
| PAKAF_02183 | 3 | 60 | -10.561699 | drug efflux transporter,Multidrug resistance | |
| PAKAF_02184 | 3 | 61 | -10.533881 | multidrug resistance protein A,Inner membrane | |
| PAKAF_02185 | 3 | 57 | -11.007954 | outer membrane channel lipoprotein,Multidrug | |
| PAKAF_02186 | 2 | 54 | -10.950368 | TetR family transcriptional regulator,HTH-type | |
| PAKAF_02187 | 1 | 47 | -9.071714 | TetR family transcriptional regulator | |
| PAKAF_02188 | 1 | 44 | -8.398861 | TetR family transcriptional regulator | |
| PAKAF_02189 | 1 | 41 | -7.610810 | glycoside hydrolase family | |
| PAKAF_02190 | 2 | 35 | -6.277584 | cytochrome o ubiquinol oxidase subunit | |
| PAKAF_02191 | 0 | 32 | -4.684390 | putative methyl-accepting chemotaxis | |
| PAKAF_02192 | 0 | 27 | -3.562293 | relaxase,Predicted HD-superfamily | |
| PAKAF_05923 | 1 | 24 | -3.849045 | hypothetical protein | |
| PAKAF_02193 | 2 | 21 | -3.193912 | integrase family protein | |
| PAKAF_02194 | 3 | 19 | -2.670962 | RES domain | |
| PAKAF_02195 | 3 | 21 | -1.961371 | TraG-like family protein,TraG-like protein, | |
| PAKAF_02196 | 2 | 19 | -0.703625 | hypothetical protein | |
| PAKAF_02197 | 2 | 18 | -0.684438 | putative integral membrane protein,integrating | |
| PAKAF_02198 | 2 | 17 | -0.507420 | integrating conjugative element | |
| PAKAF_02199 | 2 | 18 | 0.106784 | integrating conjugative element | |
| PAKAF_02200 | 2 | 18 | -0.152113 | dsba oxidoreductase,Protein-disulfide | |
| PAKAF_02201 | 2 | 18 | -0.128364 | type IV secretory pathway, VirB4 component,type | |
| PAKAF_02202 | 2 | 17 | 0.351467 | lipoprotein,conjugative transfer region | |
| PAKAF_02203 | 1 | 17 | 0.193485 | integrating conjugative element | |
| PAKAF_02204 | 3 | 19 | 1.077651 | integrating conjugative element | |
| PAKAF_02205 | 4 | 18 | -0.708169 | integrating conjugative element | |
| PAKAF_02206 | 2 | 15 | -1.403335 | conjugative transfer region protein,conjugative | |
| PAKAF_02207 | 2 | 15 | -1.288222 | integrating conjugative element membrane | |
| PAKAF_02208 | 2 | 16 | -0.383146 | conjugative transfer protein,integrating | |
| PAKAF_02209 | 3 | 16 | 0.357057 | putative transmembrane protein,integrative | |
| PAKAF_02210 | 3 | 16 | 0.412668 | integrating conjugative element membrane | |
| PAKAF_02211 | 3 | 18 | 0.796266 | conjugative coupling factor TraD,Type IV | |
| PAKAF_02212 | 1 | 23 | 2.108570 | integrating conjugative element | |
| PAKAF_02213 | 1 | 19 | -0.087642 | lytic transglycosylase, catalytic | |
| PAKAF_02214 | 1 | 20 | -0.984721 | integrating conjugative element | |
| PAKAF_02215 | 2 | 23 | -2.269025 | putative secreted protein,Uncharacterized | |
| PAKAF_02216 | 2 | 22 | -2.663353 | pilL lipoprotein (type IV pili),integrating | |
| PAKAF_02217 | 1 | 18 | -2.880458 | hypothetical protein | |
| PAKAF_02218 | 1 | 17 | -2.917968 | Helicase conserved C-terminal domain | |
| PAKAF_02219 | 3 | 22 | -2.815054 | O-methyl transferase family protein | |
| PAKAF_02220 | 1 | 25 | -2.670611 | O-methyl transferase family domain-containing | |
| PAKAF_02221 | 0 | 24 | -1.958649 | O-methyl transferase family protein,DNA | |
| PAKAF_02222 | 0 | 25 | -1.530180 | hypothetical protein | |
| PAKAF_02223 | 0 | 27 | -1.816829 | hypothetical protein | |
| PAKAF_02224 | 1 | 25 | -1.619530 | hypothetical protein | |
| PAKAF_02225 | 2 | 21 | -1.964518 | hypothetical protein | |
| PAKAF_02226 | 3 | 20 | -2.291354 | Protein of unknown function (DUF3275) | |
| PAKAF_02227 | 3 | 18 | -2.828679 | Protein of unknown function (DUF3577) | |
| PAKAF_02229 | 2 | 19 | -3.597914 | Protein of unknown function (DUF3085) | |
| PAKAF_02230 | 1 | 18 | -3.644750 | GTPase SAR1 and related small G protein | |
| PAKAF_02232 | 2 | 21 | -1.651821 | uridylate kinase | |
| PAKAF_02233 | 0 | 21 | -1.229347 | amino acid ABC transporter/signal transduction | |
| PAKAF_02234 | 1 | 24 | -1.030245 | hypothetical protein | |
| PAKAF_02235 | 2 | 23 | -0.957571 | hypothetical protein | |
| PAKAF_02237 | 2 | 22 | -0.664699 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02183 | TCRTETB | 121 | 4e-32 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02184 | RTXTOXIND | 97 | 4e-24 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02186 | HTHTETR | 62 | 1e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02192 | PF03544 | 29 | 0.038 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02213 | OMPADOMAIN | 32 | 0.001 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02220 | 56KDTSANTIGN | 27 | 0.014 | Rickettsia 56kDa type-specific antigen protein sign... | |
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein | |||||
| 25 | PAKAF_02277 | PAKAF_02296 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02277 | -1 | 14 | -3.468567 | probable transcriptional regulator | |
| PAKAF_02278 | 0 | 14 | -3.834932 | acyl-CoA thioesterase | |
| PAKAF_02279 | -2 | 10 | -3.037909 | VacJ family lipoprotein | |
| PAKAF_02280 | 0 | 30 | -6.544464 | PilZ domain-containing protein | |
| PAKAF_02281 | 0 | 27 | -6.329058 | probable two-component response regulator | |
| PAKAF_02282 | 0 | 29 | -6.405317 | STAS domain-containing protein | |
| PAKAF_02283 | 0 | 30 | -6.184845 | transaldolase | |
| PAKAF_02284 | 1 | 42 | -8.278133 | tRNA-dihydrouridine synthase A | |
| PAKAF_02285 | 2 | 49 | -9.648391 | pseudaminidase | |
| PAKAF_02286 | 0 | 30 | -5.370206 | hypothetical protein | |
| PAKAF_02287 | 0 | 25 | -3.897542 | hypothetical protein | |
| PAKAF_02288 | -1 | 23 | -3.291356 | hypothetical protein | |
| PAKAF_02289 | 0 | 22 | -2.908734 | structural protein | |
| PAKAF_02290 | -2 | 11 | 0.332776 | hypothetical protein | |
| PAKAF_02292 | -2 | 9 | 1.091323 | hypothetical protein | |
| PAKAF_02293 | -1 | 9 | 0.754242 | probable chemotaxis transducer | |
| PAKAF_02294 | 0 | 14 | 0.854548 | carboxypeptidase G2 precursor | |
| PAKAF_02295 | 0 | 15 | 0.788658 | GAF domain-containing protein | |
| PAKAF_02296 | 2 | 16 | 0.070530 | helix-turn-helix transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02279 | VACJLIPOPROT | 272 | 3e-95 | VacJ lipoprotein signature. | |
>VACJLIPOPROT#VacJ lipoprotein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02281 | HTHFIS | 110 | 7e-29 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 26 | PAKAF_02321 | PAKAF_02331 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02321 | 0 | 20 | -3.080843 | alpha/beta hydrolase | |
| PAKAF_02322 | 2 | 14 | -4.044910 | hypothetical protein | |
| PAKAF_02323 | 2 | 14 | -3.304931 | putative lipoprotein | |
| PAKAF_02324 | 1 | 11 | -2.691876 | putative membrane protein | |
| PAKAF_02325 | 1 | 10 | -2.201133 | cupin domain-containing protein | |
| PAKAF_02326 | 0 | 13 | -2.008092 | hypothetical protein | |
| PAKAF_02327 | 0 | 12 | -2.254413 | OprQ | |
| PAKAF_02328 | 2 | 17 | -1.232180 | hypothetical protein | |
| PAKAF_02329 | 2 | 17 | -1.649547 | probable transcriptional regulator | |
| PAKAF_02330 | 2 | 17 | -1.802591 | PACE efflux transporter | |
| PAKAF_02331 | 2 | 18 | -1.426013 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02325 | MICOLLPTASE | 28 | 0.012 | Microbial collagenase metalloprotease (M9) signature. | |
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02329 | TCRTETOQM | 29 | 0.028 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| 27 | PAKAF_02345 | PAKAF_02374 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02345 | 2 | 11 | 0.058942 | probable methionine aminopeptidase | |
| PAKAF_02346 | 0 | 15 | 1.352906 | hypothetical protein | |
| PAKAF_02347 | -2 | 10 | -1.314827 | DUF3509 domain-containing protein | |
| PAKAF_02348 | -1 | 12 | -2.633235 | hypothetical protein | |
| PAKAF_02349 | -1 | 12 | -2.897090 | hypothetical protein | |
| PAKAF_02350 | 0 | 14 | -3.504525 | hypothetical protein | |
| PAKAF_02351 | 0 | 14 | -3.797251 | probable hydrolase | |
| PAKAF_02353 | 0 | 12 | -3.343714 | threonyl-tRNA synthetase | |
| PAKAF_02354 | 2 | 16 | -3.559160 | translation initiation factor IF-3 | |
| PAKAF_02355 | 1 | 14 | -2.727120 | 50S ribosomal protein L35 | |
| PAKAF_02356 | 0 | 18 | -5.296695 | 50S ribosomal protein L20 | |
| PAKAF_02357 | 0 | 20 | -6.370615 | phenylalanyl-tRNA synthetase, alpha-subunit | |
| PAKAF_02358 | 2 | 31 | -8.215639 | phenylalanyl-tRNA synthetase, beta subunit | |
| PAKAF_02359 | 2 | 40 | -10.728939 | integration host factor, alpha subunit | |
| PAKAF_02360 | 2 | 45 | -11.570819 | MerR family transcriptional regulator | |
| PAKAF_02362 | 3 | 49 | -11.985548 | *type I restriction-modification system subunit | |
| PAKAF_02363 | 3 | 54 | -12.491261 | type I restriction-modification system subunit | |
| PAKAF_02364 | 4 | 62 | -13.033751 | restriction modification system DNA specificity | |
| PAKAF_02365 | 3 | 60 | -12.865233 | putative ABC transporter,Predicted ATP-binding | |
| PAKAF_02366 | 5 | 67 | -13.542080 | conserved hypothetical protein | |
| PAKAF_02367 | 5 | 61 | -12.456789 | Restriction endonuclease | |
| PAKAF_05924 | 4 | 56 | -11.550317 | AlpA family transcriptional regulator | |
| PAKAF_02368 | 5 | 56 | -11.101145 | Reverse transcriptase (RNA-dependent DNA | |
| PAKAF_02369 | 1 | 51 | -6.521089 | insertion sequence IS407 OrfB | |
| PAKAF_02370 | 5 | 34 | -1.404421 | insertion sequence IS407 OrfB | |
| PAKAF_02371 | 4 | 15 | 2.143084 | transposase A,Transposase | |
| PAKAF_05925 | 4 | 16 | 2.963652 | IS3 family transposase | |
| PAKAF_05926 | 3 | 16 | 3.164415 | transposase | |
| PAKAF_05926 | 3 | 16 | 3.208909 | transposase | |
| PAKAF_02373 | 3 | 17 | 3.519087 | hypothetical protein | |
| PAKAF_02374 | 2 | 15 | 3.378292 | DUF4011 domain-containing protein | |
| PAKAF_02374 | 2 | 14 | 3.167040 | DUF4011 domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02359 | DNABINDINGHU | 113 | 1e-36 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02362 | TONBPROTEIN | 31 | 0.019 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02373 | RTXTOXIND | 34 | 0.001 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 28 | PAKAF_02477 | PAKAF_02482 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02477 | 0 | 14 | -3.139446 | tRNA methyltransferase | |
| PAKAF_02478 | 0 | 10 | -3.169758 | NUDIX hydrolase | |
| PAKAF_02479 | 0 | 10 | -3.865671 | isocitrate dehydrogenase | |
| PAKAF_02480 | 0 | 11 | -4.006583 | isocitrate dehydrogenase | |
| PAKAF_02481 | -2 | 12 | -3.343776 | cold-shock protein CspD | |
| PAKAF_02482 | -2 | 8 | -3.147451 | ClpS |
| 29 | PAKAF_02518 | PAKAF_02537 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02518 | 0 | 21 | -3.455958 | response regulator GacA | |
| PAKAF_02519 | 0 | 23 | -3.494550 | excinuclease ABC subunit C | |
| PAKAF_02520 | 0 | 25 | -4.058610 | CDP-diacylglycerol--glycerol-3-phosphate | |
| PAKAF_02522 | 0 | 25 | -3.723908 | *probable sensor/response regulator hybrid | |
| PAKAF_02523 | 0 | 19 | -3.387462 | hypothetical protein | |
| PAKAF_02525 | -1 | 16 | -2.953756 | *hypothetical protein | |
| PAKAF_02526 | -1 | 14 | -2.205103 | NAD(P)H-dependent oxidoreductase | |
| PAKAF_02527 | -1 | 15 | -2.486502 | L-Tryptophan:oxygen 2,3-oxidoreductase | |
| PAKAF_02528 | -1 | 13 | -1.863855 | probable acetyltransferase | |
| PAKAF_02529 | -1 | 11 | -2.265012 | probable transcriptional regulator | |
| PAKAF_02530 | -1 | 13 | -2.342572 | DMT family transporter | |
| PAKAF_02531 | -1 | 16 | -3.229383 | nitroreductase family protein | |
| PAKAF_02532 | 0 | 18 | -3.221106 | alkane-1-monooxygenase | |
| PAKAF_02533 | 1 | 19 | -3.096898 | probable chemotaxis transducer | |
| PAKAF_02534 | 1 | 18 | -3.145356 | probable two-component response regulator | |
| PAKAF_02535 | 2 | 23 | -3.291096 | probable two-component sensor | |
| PAKAF_02537 | 1 | 22 | -3.304906 | *LecA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02518 | HTHFIS | 55 | 2e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02522 | HTHFIS | 66 | 5e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02528 | SACTRNSFRASE | 36 | 2e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02534 | HTHFIS | 106 | 6e-27 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02535 | PF06580 | 35 | 5e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 30 | PAKAF_02623 | PAKAF_02671 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02623 | 2 | 14 | 2.492562 | probable transcriptional regulator | |
| PAKAF_02624 | 2 | 13 | 1.300204 | probable transcriptional regulator | |
| PAKAF_02625 | 1 | 14 | 0.532964 | hypothetical protein | |
| PAKAF_02626 | 0 | 13 | 0.522065 | Pseudomonas type III repressor gene C, PtrC | |
| PAKAF_02627 | 2 | 8 | 1.849323 | hypothetical protein | |
| PAKAF_02628 | 1 | 8 | 2.492146 | TetR/AcrR family transcriptional regulator | |
| PAKAF_02629 | 2 | 10 | 3.063641 | LLM class flavin-dependent oxidoreductase | |
| PAKAF_02630 | 3 | 9 | 3.399934 | probable cytochrome c | |
| PAKAF_02631 | 3 | 10 | 3.201770 | c-type cytochrome | |
| PAKAF_02632 | 3 | 10 | 3.523995 | probable two-component sensor | |
| PAKAF_02633 | 0 | 10 | 2.825772 | probable two-component response regulator | |
| PAKAF_02634 | 1 | 9 | 2.732431 | probable thiol:disulfide interchange protein | |
| PAKAF_02635 | 0 | 7 | 2.716833 | probable thiol:disulfide interchange protein | |
| PAKAF_02636 | 0 | 10 | 2.808764 | thiol:disulfide interchange protein DsbG | |
| PAKAF_02637 | -1 | 11 | 3.121665 | probable cytochrome P450 | |
| PAKAF_02638 | 0 | 13 | 3.258403 | hypothetical protein | |
| PAKAF_02639 | 0 | 13 | 3.532683 | probable glutathione S-transferase | |
| PAKAF_02640 | 1 | 12 | 3.951633 | probable major facilitator superfamily (MFS) | |
| PAKAF_02641 | 1 | 13 | 2.131947 | fumarylacetoacetate hydrolase family protein | |
| PAKAF_02642 | 1 | 11 | 1.903704 | gentisate 1,2-dioxygenase | |
| PAKAF_02643 | 1 | 11 | 1.738788 | probable transcriptional regulator | |
| PAKAF_02644 | 2 | 11 | -0.395068 | ECF sigma factor FoxI | |
| PAKAF_02645 | 3 | 14 | -0.718240 | Anti-sigma factor FoxR | |
| PAKAF_02646 | 4 | 16 | -2.039909 | Ferrioxamine receptor FoxA | |
| PAKAF_02647 | 4 | 20 | -2.097335 | PepSY domain-containing protein | |
| PAKAF_02648 | 4 | 23 | -2.173908 | hypothetical protein | |
| PAKAF_02649 | 4 | 23 | -2.617074 | hypothetical protein | |
| PAKAF_02650 | 3 | 17 | -0.101150 | Wall-associated protein,Cell wall-associated | |
| PAKAF_02651 | 3 | 13 | 1.230688 | yd repeat-containing protein,YD repeat (two | |
| PAKAF_02653 | 2 | 14 | 3.034935 | class I SAM-dependent methyltransferase | |
| PAKAF_02653 | 2 | 13 | 3.091246 | class I SAM-dependent methyltransferase | |
| PAKAF_02654 | 1 | 13 | 3.160294 | YgdI/YgdR family lipoprotein | |
| PAKAF_02655 | 2 | 12 | 3.356791 | esterase family protein | |
| PAKAF_02655 | 0 | 11 | 3.109966 | esterase family protein | |
| PAKAF_02656 | -2 | 14 | 2.548290 | hypothetical protein | |
| PAKAF_02657 | -2 | 14 | 2.091335 | probable transcriptional regulator | |
| PAKAF_02658 | -2 | 13 | 1.903364 | amidohydrolase | |
| PAKAF_02659 | -2 | 13 | 1.967133 | probable transcriptional regulator | |
| PAKAF_02660 | -2 | 13 | 1.930632 | glycine cleavage system protein H2 | |
| PAKAF_02661 | -2 | 10 | 2.139807 | glycine cleavage system protein P2 | |
| PAKAF_02662 | -2 | 7 | 3.416636 | serine hydroxymethyltransferase | |
| PAKAF_02663 | -1 | 7 | 3.977903 | L-serine dehydratase | |
| PAKAF_02664 | 1 | 7 | 4.852881 | glycine cleavage system protein T2 | |
| PAKAF_02665 | 1 | 7 | 4.645417 | hypothetical protein | |
| PAKAF_02666 | 2 | 9 | 5.053155 | polysaccharide deacetylase family protein | |
| PAKAF_02667 | 3 | 11 | 5.274070 | protease modulator HflK | |
| PAKAF_02668 | 3 | 12 | 4.580612 | protease modulator HflC | |
| PAKAF_02669 | 3 | 10 | 3.915618 | hypothetical protein | |
| PAKAF_02670 | 3 | 13 | 3.145498 | hypothetical protein | |
| PAKAF_02671 | 3 | 13 | 3.229802 | probable cation-transporting P-type ATPase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02628 | HTHTETR | 51 | 4e-10 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02633 | HTHFIS | 83 | 2e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02640 | TCRTETB | 49 | 3e-08 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02643 | MPTASEINHBTR | 28 | 0.030 | Metalloprotease inhibitor signature. | |
>MPTASEINHBTR#Metalloprotease inhibitor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02646 | TYPE3OMGPROT | 34 | 0.002 | Type III secretion system outer membrane G protein ... | |
>TYPE3OMGPROT#Type III secretion system outer membrane G protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02657 | HTHFIS | 331 | e-111 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02658 | UREASE | 34 | 0.002 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 31 | PAKAF_02742 | PAKAF_02747 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02742 | 2 | 10 | 1.373329 | TssC3 | |
| PAKAF_02743 | 4 | 11 | 2.203392 | TssB3 | |
| PAKAF_02744 | 4 | 12 | 2.286797 | TssJ3 | |
| PAKAF_02745 | 4 | 11 | 2.455399 | TssK3 | |
| PAKAF_02746 | 4 | 11 | 1.997984 | TssL3 | |
| PAKAF_02747 | 2 | 10 | 1.934628 | TssM3 |
| 32 | PAKAF_02758 | PAKAF_02763 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02758 | 0 | 13 | 3.236898 | probable ATP-binding component of ABC | |
| PAKAF_02759 | 1 | 12 | 3.369785 | MetQ/NlpA family ABC transporter | |
| PAKAF_02760 | 0 | 12 | 4.451521 | LLM class flavin-dependent oxidoreductase | |
| PAKAF_02761 | 0 | 11 | 4.541066 | SfnB family sulfur acquisition oxidoreductase | |
| PAKAF_02762 | -2 | 12 | 4.063228 | SfnB family sulfur acquisition oxidoreductase | |
| PAKAF_02763 | -2 | 13 | 3.482861 | NAD(P)/FAD-dependent oxidoreductase |
| 33 | PAKAF_02790 | PAKAF_02817 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02790 | 3 | 8 | 1.631277 | cupin domain-containing protein | |
| PAKAF_02791 | 3 | 9 | 1.760616 | probable oxidoreductase | |
| PAKAF_02792 | 5 | 10 | 2.619361 | probable transcriptional regulator | |
| PAKAF_02793 | 6 | 10 | 2.080411 | serine hydrolase | |
| PAKAF_02794 | 5 | 11 | 1.320091 | probable major facilitator superfamily (MFS) | |
| PAKAF_02795 | 4 | 11 | 0.134434 | hypothetical protein | |
| PAKAF_02796 | -2 | 12 | 1.358178 | probable transcriptional regulator | |
| PAKAF_02797 | -3 | 15 | 0.773663 | hypothetical protein | |
| PAKAF_02798 | -1 | 12 | 3.102997 | TauD/TfdA family dioxygenase | |
| PAKAF_02799 | -1 | 12 | 3.384061 | ABC transporter substrate-binding protein | |
| PAKAF_02800 | 0 | 11 | 3.531899 | probable ATP-binding component of ABC | |
| PAKAF_02801 | -1 | 11 | 4.273225 | probable permease of ABC transporter | |
| PAKAF_02802 | -1 | 10 | 4.459947 | AmbA | |
| PAKAF_02803 | -1 | 10 | 4.360085 | AmbB | |
| PAKAF_02804 | -1 | 11 | 3.618033 | AmbC | |
| PAKAF_02805 | -1 | 10 | 3.084574 | AmbD | |
| PAKAF_02806 | -1 | 10 | 3.054593 | AmbE | |
| PAKAF_02807 | -1 | 11 | 0.471257 | hypothetical protein | |
| PAKAF_02808 | 0 | 10 | 0.484992 | chitinase | |
| PAKAF_02809 | 0 | 11 | 1.074069 | probable transcriptional regulator | |
| PAKAF_02810 | 0 | 9 | 2.206282 | probable oxidoreductase | |
| PAKAF_02811 | 1 | 11 | 3.305438 | probable ferredoxin | |
| PAKAF_02812 | -2 | 12 | 2.413106 | nitrate ABC transporter substrate-binding | |
| PAKAF_02813 | 1 | 14 | 2.826737 | probable permease of ABC transporter | |
| PAKAF_02814 | 1 | 13 | 2.185860 | probable ATP-binding component of ABC | |
| PAKAF_02815 | 2 | 13 | 2.041718 | HEAT repeat domain-containing protein | |
| PAKAF_02816 | 2 | 13 | 1.382933 | DUF971 domain-containing protein | |
| PAKAF_02817 | 2 | 12 | 1.519947 | probable glucose-sensitive porin |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02794 | TCRTETB | 46 | 2e-07 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 34 | PAKAF_02858 | PAKAF_02868 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02858 | 3 | 9 | 1.527161 | lipoamide dehydrogenase-Val | |
| PAKAF_02859 | 2 | 11 | 0.846385 | branched-chain alpha-keto acid dehydrogenase | |
| PAKAF_02860 | 1 | 11 | 0.904759 | 2-oxoisovalerate dehydrogenase (beta subunit) | |
| PAKAF_02861 | 0 | 10 | 2.638743 | 2-oxoisovalerate dehydrogenase (alpha subunit) | |
| PAKAF_02862 | -1 | 8 | 2.330639 | hypothetical protein | |
| PAKAF_02863 | 3 | 7 | 3.077352 | transcriptional regulator BkdR | |
| PAKAF_02864 | 2 | 8 | 2.997617 | hypothetical protein | |
| PAKAF_02865 | 2 | 9 | 3.194060 | DNA topoisomerase IB | |
| PAKAF_02866 | 2 | 9 | 3.214707 | FAD-dependent oxidoreductase | |
| PAKAF_02867 | 3 | 9 | 2.106485 | acyltransferase family protein | |
| PAKAF_02868 | 2 | 8 | 2.920864 | PslL |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02859 | IGASERPTASE | 35 | 6e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 35 | PAKAF_02881 | PAKAF_02905 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02881 | 2 | 24 | -2.086144 | short-chain | |
| PAKAF_02882 | 2 | 21 | -2.870153 | proteobacterial sortase system OmpA family | |
| PAKAF_02883 | 2 | 17 | -3.261306 | protein RomA,metal-dependent | |
| PAKAF_02884 | 1 | 19 | -3.743482 | Sugar diacid utilization regulator | |
| PAKAF_02885 | 2 | 19 | -4.455007 | phytanoyl-CoA dioxygenase,Phytanoyl-CoA | |
| PAKAF_02886 | 2 | 22 | -4.534453 | BNR repeat-containing protein,Ycf48-like protein | |
| PAKAF_02887 | 1 | 23 | -5.301770 | transporter,multidrug efflux protein,Predicted | |
| PAKAF_02888 | 1 | 29 | -6.140723 | putative lipoprotein,Protein of unknown function | |
| PAKAF_02889 | 0 | 35 | -6.905833 | hypothetical protein,Protein of unknown function | |
| PAKAF_02890 | 0 | 37 | -6.692349 | hypothetical protein | |
| PAKAF_02891 | 0 | 32 | -5.768763 | phytoene dehydrogenase,Gamma-glutamylputrescine | |
| PAKAF_02892 | 0 | 25 | -5.060710 | phytanoyl-CoA dioxygenase,Phytanoyl-CoA | |
| PAKAF_02893 | 0 | 18 | -3.897900 | TetR family transcriptional regulator,putative | |
| PAKAF_02894 | 0 | 15 | -3.135044 | FAD-containing monooxygenase EthA,FAD-containing | |
| PAKAF_02895 | 0 | 14 | -2.203210 | hydrolase,Putative aminoacrylate hydrolase | |
| PAKAF_02896 | 1 | 12 | -2.208214 | 1,3-propanediol dehydrogenase,1,3-propanediol | |
| PAKAF_02897 | 1 | 13 | -1.909656 | amino acid permease,Putrescine importer | |
| PAKAF_02898 | 1 | 14 | -1.850846 | gamma-aminobutyraldehyde | |
| PAKAF_02899 | 2 | 12 | -1.245002 | diaminobutyrate--2-oxoglutarate | |
| PAKAF_02900 | 4 | 15 | -0.470482 | putative | |
| PAKAF_02901 | 6 | 13 | 0.144705 | hypothetical protein | |
| PAKAF_02902 | 6 | 14 | 0.363336 | acetate permease,Acetate transporter | |
| PAKAF_02903 | 5 | 12 | 1.327521 | membrane protein,Inner membrane protein | |
| PAKAF_02904 | 3 | 13 | 0.572642 | acyl-CoA synthetase,Short-chain-fatty-acid--CoA | |
| PAKAF_02905 | 2 | 15 | -0.292833 | dehydrogenase,Gluconate 5-dehydrogenase,short |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02881 | DHBDHDRGNASE | 97 | 2e-26 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02884 | HTHFIS | 32 | 0.006 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02887 | ACRIFLAVINRP | 73 | 2e-15 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02893 | HTHTETR | 50 | 5e-10 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02903 | RTXTOXINA | 26 | 0.026 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02905 | DHBDHDRGNASE | 112 | 3e-32 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 36 | PAKAF_02986 | PAKAF_03004 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02986 | 2 | 14 | 2.138332 | CinA family protein | |
| PAKAF_02987 | 2 | 11 | 2.524014 | probable metallothionein | |
| PAKAF_02988 | 2 | 10 | 1.920959 | hypothetical protein | |
| PAKAF_02989 | 1 | 10 | 1.999096 | probable ATP-dependent DNA ligase | |
| PAKAF_02990 | 0 | 14 | 1.866944 | histidine kinase | |
| PAKAF_02991 | 0 | 11 | 2.339412 | hypothetical protein | |
| PAKAF_02993 | 1 | 8 | 2.148202 | probable transporter | |
| PAKAF_02994 | 1 | 10 | 1.615471 | hypothetical protein | |
| PAKAF_02995 | 3 | 10 | 1.962832 | EAL domain-containing protein | |
| PAKAF_02996 | 2 | 9 | 1.669495 | chaperone CupA5 | |
| PAKAF_02997 | 3 | 9 | 1.318298 | fimbrial subunit CupA4 | |
| PAKAF_02998 | 2 | 7 | 1.671527 | usher CupA3 | |
| PAKAF_02999 | 1 | 8 | 2.566800 | chaperone CupA2 | |
| PAKAF_03000 | 0 | 8 | 2.684175 | fimbrial subunit CupA1 | |
| PAKAF_03001 | -1 | 9 | 2.715255 | phosphoadenosine phosphosulfate reductase | |
| PAKAF_03002 | -1 | 10 | 3.101535 | conserved hypothetical protein | |
| PAKAF_03003 | -1 | 10 | 3.211961 | probable aldehyde dehydrogenase | |
| PAKAF_03004 | -2 | 11 | 3.195837 | probable dehydrogenase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02986 | ACRIFLAVINRP | 28 | 0.024 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02990 | HTHFIS | 35 | 8e-05 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02998 | PF00577 | 772 | 0.0 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| 37 | PAKAF_03014 | PAKAF_03040 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03014 | -1 | 14 | 3.053632 | probable transcriptional regulator | |
| PAKAF_03015 | -2 | 16 | 3.375086 | probable major facilitator superfamily (MFS) | |
| PAKAF_03016 | -1 | 10 | 3.617924 | pyroglutatmate porin OpdO | |
| PAKAF_03017 | 1 | 12 | 2.593997 | LamB/YcsF family protein | |
| PAKAF_03018 | 1 | 14 | 2.510394 | allophanate hydrolase subunit 1 | |
| PAKAF_03019 | 2 | 20 | 0.738384 | biotin-dependent carboxyltransferase family | |
| PAKAF_03020 | 2 | 28 | -2.044993 | DUF4142 domain-containing protein | |
| PAKAF_03021 | 1 | 31 | -3.437390 | probable decarboxylase | |
| PAKAF_05927 | 1 | 44 | -5.841928 | hypothetical protein | |
| PAKAF_03022 | 0 | 40 | -7.887846 | four-helix bundle copper-binding protein | |
| PAKAF_03024 | 1 | 43 | -8.619365 | probable acetyltransferase | |
| PAKAF_03025 | 0 | 37 | -6.923072 | probable cysteine synthase | |
| PAKAF_03026 | 0 | 30 | -3.950604 | probable molybdopterin biosynthesis protein | |
| PAKAF_03027 | 0 | 22 | -2.092406 | hypothetical protein | |
| PAKAF_03028 | -1 | 17 | -0.635017 | EamA family transporter | |
| PAKAF_03029 | 0 | 12 | 1.223435 | probable transcriptional regulator | |
| PAKAF_03030 | -1 | 9 | 3.923334 | probable short-chain dehydrogenase | |
| PAKAF_03031 | -1 | 8 | 3.479138 | probable esterase/deacetylase | |
| PAKAF_03032 | 0 | 8 | 3.194330 | probable flavin-binding monooxygenase | |
| PAKAF_03033 | 3 | 11 | 4.172077 | probable transcriptional regulator | |
| PAKAF_03034 | 1 | 12 | 4.358850 | hypothetical protein | |
| PAKAF_03035 | 1 | 9 | 3.573698 | probable transmembrane sensor | |
| PAKAF_03036 | 0 | 9 | 3.233362 | probable sigma-70 factor, ECF subfamily | |
| PAKAF_03037 | 0 | 9 | 3.618625 | probable major facilitator superfamily (MFS) | |
| PAKAF_03038 | 1 | 9 | 3.276165 | MFS transporter | |
| PAKAF_03039 | 1 | 9 | 2.900999 | LLM class flavin-dependent oxidoreductase | |
| PAKAF_03040 | 1 | 9 | 3.028391 | TonB-dependent receptor |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03015 | TCRTETB | 39 | 3e-05 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03030 | DHBDHDRGNASE | 85 | 5e-22 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03037 | TCRTETA | 55 | 2e-10 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 38 | PAKAF_03087 | PAKAF_03098 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03087 | 2 | 21 | -6.395754 | probable transporter (membrane subunit) | |
| PAKAF_03088 | 3 | 30 | -8.458137 | probable amino acid permease | |
| PAKAF_03089 | 3 | 29 | -6.188026 | probable glutamine synthetase | |
| PAKAF_03090 | 5 | 34 | -5.555510 | putative branched-chain amino acid transport | |
| PAKAF_03091 | 5 | 32 | -5.017868 | branched-chain amino acid ABC transporter | |
| PAKAF_03092 | 4 | 26 | -3.699512 | hypothetical protein | |
| PAKAF_03093 | 1 | 11 | 0.850453 | methyltransferase domain-containing protein | |
| PAKAF_03094 | 1 | 9 | 2.572128 | probable decarboxylase | |
| PAKAF_03095 | 2 | 13 | 2.150106 | class I SAM-dependent methyltransferase | |
| PAKAF_03096 | 3 | 12 | 0.273515 | siderophore-interacting protein | |
| PAKAF_03097 | 1 | 12 | -0.522699 | probable transcriptional regulator | |
| PAKAF_03098 | 2 | 14 | -1.181952 | DUF1127 domain-containing protein |
| 39 | PAKAF_03145 | PAKAF_03161 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03145 | 2 | 20 | 0.938772 | pyrroloquinoline quinone biosynthesis protein A | |
| PAKAF_03146 | 1 | 17 | 1.652794 | NAD+ dependent aldehyde dehydrogenase ExaC | |
| PAKAF_03147 | 2 | 15 | 2.167690 | cytochrome c550 | |
| PAKAF_03148 | 1 | 15 | 1.614277 | quinoprotein ethanol dehydrogenase | |
| PAKAF_03149 | 4 | 10 | 3.832411 | pentapeptide repeat-containing protein | |
| PAKAF_03150 | 2 | 9 | 2.702448 | response regulator EraR | |
| PAKAF_03151 | 0 | 10 | 2.345442 | sensor kinase, EraS | |
| PAKAF_03152 | -1 | 10 | 1.000403 | hypothetical protein | |
| PAKAF_03153 | -1 | 8 | 2.637881 | response regulator ErbR | |
| PAKAF_03154 | 0 | 9 | 2.727369 | DMT family transporter | |
| PAKAF_03155 | -1 | 10 | 2.110329 | ErcS' | |
| PAKAF_03156 | -1 | 9 | 2.053426 | hypothetical protein | |
| PAKAF_03157 | 0 | 10 | 2.271010 | porin | |
| PAKAF_03158 | 2 | 11 | 3.356342 | pyrroloquinoline quinone biosynthesis protein F | |
| PAKAF_03159 | 1 | 11 | 0.732723 | phosphoethanolamine--lipid A transferase | |
| PAKAF_03160 | -2 | 12 | 1.013577 | branched chain amino acid transporter BraZ | |
| PAKAF_03161 | 2 | 17 | 0.601723 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03150 | HTHFIS | 78 | 1e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03153 | HTHFIS | 71 | 2e-16 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03155 | HTHFIS | 47 | 3e-07 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 40 | PAKAF_03187 | PAKAF_03193 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03187 | 2 | 16 | -3.149547 | hypothetical protein | |
| PAKAF_03188 | 6 | 31 | -8.058584 | GNAT family N-acetyltransferase | |
| PAKAF_03189 | 6 | 34 | -9.487654 | hypothetical protein | |
| PAKAF_03190 | 5 | 26 | -6.311382 | hypothetical protein | |
| PAKAF_03191 | 5 | 29 | -6.871208 | catalase,Catalase | |
| PAKAF_03192 | 5 | 33 | -7.252916 | hypothetical protein | |
| PAKAF_03193 | 2 | 22 | -4.779511 | Uncharacterized protein conserved in bacteria |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03188 | SACTRNSFRASE | 42 | 7e-07 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| 41 | PAKAF_03216 | PAKAF_03231 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03216 | 1 | 12 | 3.165363 | hypothetical protein | |
| PAKAF_03217 | 0 | 11 | 3.446405 | ECF sigma factor, FemI | |
| PAKAF_03218 | 0 | 10 | 3.381377 | sigma factor regulator, FemR | |
| PAKAF_03219 | -1 | 10 | 2.979558 | ferric-mycobactin receptor, FemA | |
| PAKAF_03220 | -1 | 11 | 3.273790 | PepSY domain-containing protein | |
| PAKAF_03222 | -2 | 11 | 3.871606 | probable major facilitator superfamily (MFS) | |
| PAKAF_03223 | -2 | 13 | 3.302404 | dienelactone hydrolase | |
| PAKAF_03224 | 1 | 16 | 3.850690 | HIT family protein | |
| PAKAF_03225 | 0 | 16 | 3.096292 | putative pyridoxamine 5'-phosphate | |
| PAKAF_03226 | -1 | 14 | 2.074715 | phenazine biosynthesis | |
| PAKAF_03227 | 0 | 11 | 0.044386 | phenazine biosynthesis protein PhzE,Anthranilate | |
| PAKAF_03228 | -1 | 11 | -2.267759 | phenazine biosynthesis protein PhzD,Probable | |
| PAKAF_03229 | 0 | 11 | -2.671899 | phospho-2-dehydro-3-deoxyheptonate | |
| PAKAF_03230 | -1 | 13 | -4.602239 | phenazine biosynthesis protein,Phenazine | |
| PAKAF_03231 | 0 | 13 | -4.052145 | phenazine biosynthesis protein,Phenazine |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03222 | TCRTETA | 97 | 3e-24 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03228 | ISCHRISMTASE | 352 | e-126 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| 42 | PAKAF_03252 | PAKAF_03280 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03252 | 5 | 13 | 2.081387 | transcriptional regulator,Helix-turn-helix | |
| PAKAF_03253 | 4 | 12 | 1.814209 | putative hydrolase | |
| PAKAF_03254 | 4 | 12 | 1.782461 | secretion protein,Type I secretion system | |
| PAKAF_03255 | 4 | 11 | 1.779192 | ABC transporter ATP-binding protein/permease, | |
| PAKAF_03256 | 4 | 12 | 1.650560 | putative outer membrane protein,outer membrane | |
| PAKAF_03257 | 5 | 14 | 1.632778 | glycoprotein,Cna protein B-type domain | |
| PAKAF_03258 | 0 | 10 | 0.725825 | cation transporter | |
| PAKAF_03259 | 0 | 12 | 1.396495 | hypothetical protein | |
| PAKAF_03260 | 0 | 13 | 1.661569 | LasA protease precursor | |
| PAKAF_03261 | -2 | 11 | 2.349576 | hypothetical protein | |
| PAKAF_03262 | -1 | 9 | 1.964233 | probable acyl carrier protein | |
| PAKAF_03263 | 0 | 8 | 2.308646 | secretion protein XqhA | |
| PAKAF_03264 | 4 | 9 | 1.736005 | XphA | |
| PAKAF_03265 | 2 | 8 | 1.475099 | hypothetical protein | |
| PAKAF_03266 | 1 | 8 | 1.557906 | ATP-dependent DNA helicase | |
| PAKAF_03267 | 0 | 9 | 1.185448 | VRR-NUC domain-containing protein | |
| PAKAF_03268 | -1 | 11 | 1.333593 | probable transcriptional regulator | |
| PAKAF_03269 | 0 | 10 | 1.071806 | molybdate-binding periplasmic protein precursor | |
| PAKAF_03270 | 0 | 10 | 1.200527 | molybdenum transport protein ModB | |
| PAKAF_03271 | 2 | 9 | 0.318951 | molybdenum transport protein ModC | |
| PAKAF_03272 | 3 | 10 | 0.176931 | class I SAM-dependent methyltransferase | |
| PAKAF_03273 | 3 | 11 | 0.368259 | probable transcriptional regulator | |
| PAKAF_03274 | 2 | 9 | 0.427954 | streptomycin 3''-phosphotransferase | |
| PAKAF_03276 | 3 | 10 | 0.088506 | DUF808 domain-containing protein | |
| PAKAF_03277 | 3 | 9 | 0.083292 | probable cytochrome oxidase subunit | |
| PAKAF_03278 | 1 | 8 | 1.667501 | hypothetical protein | |
| PAKAF_03279 | 2 | 8 | 1.658534 | HPP family protein | |
| PAKAF_03280 | 2 | 9 | 2.031279 | probable transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03254 | RTXTOXIND | 296 | 9e-99 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03256 | RTXTOXIND | 31 | 0.009 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03257 | INTIMIN | 49 | 2e-07 | Intimin signature. | |
>INTIMIN#Intimin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03263 | BCTERIALGSPD | 592 | 0.0 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03268 | HTHTETR | 68 | 5e-16 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 43 | PAKAF_03327 | PAKAF_03342 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03327 | 1 | 9 | -3.249302 | probable permease of ABC transporter | |
| PAKAF_03328 | 1 | 11 | -4.142364 | probable ATP-binding component of ABC | |
| PAKAF_03329 | 1 | 13 | -4.977901 | NADH-dependent enoyl-ACP reductase | |
| PAKAF_03330 | 2 | 15 | -5.779944 | peptidyl-prolyl cis-trans isomerase D | |
| PAKAF_03332 | 1 | 16 | -6.048299 | *DNA-binding protein HU | |
| PAKAF_03333 | 1 | 13 | -5.147926 | Lon protease | |
| PAKAF_03334 | 0 | 16 | -3.700661 | ATP-dependent Clp protease ATP-binding subunit | |
| PAKAF_03335 | 1 | 16 | -2.660519 | ATP-dependent Clp protease proteolytic subunit | |
| PAKAF_03336 | 2 | 16 | -2.381319 | trigger factor | |
| PAKAF_03337 | -2 | 16 | -0.599764 | two-component response regulator, ParR | |
| PAKAF_03338 | -2 | 11 | -0.414832 | two-component sensor, ParS | |
| PAKAF_03339 | -2 | 9 | -1.008756 | serine hydrolase | |
| PAKAF_03341 | 1 | 11 | -2.410324 | hypothetical protein | |
| PAKAF_03342 | 2 | 10 | -2.066214 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03329 | DHBDHDRGNASE | 63 | 9e-14 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03332 | DNABINDINGHU | 117 | 1e-38 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03337 | HTHFIS | 77 | 2e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03338 | PF06580 | 29 | 0.041 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 44 | PAKAF_03366 | PAKAF_03378 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03366 | 1 | 22 | -4.073056 | uroporphyrin-III C-methyltransferase | |
| PAKAF_03367 | 2 | 21 | -4.983825 | Major porin and structural outer membrane porin | |
| PAKAF_03368 | -1 | 23 | -2.807925 | ECF sigma factor SigX | |
| PAKAF_03369 | 0 | 13 | -2.015547 | conserved cytoplasmic membrane protein, CmpX | |
| PAKAF_03370 | 2 | 12 | -2.768222 | CrfX protein | |
| PAKAF_03371 | 2 | 13 | -2.979555 | CmaX protein | |
| PAKAF_03372 | 2 | 13 | -3.551246 | probable methyltransferase | |
| PAKAF_03373 | 1 | 11 | -3.484490 | EstX | |
| PAKAF_03374 | 1 | 13 | -3.640580 | phosphoenolpyruvate synthase | |
| PAKAF_03375 | 0 | 10 | -3.966896 | kinase/pyrophosphorylase | |
| PAKAF_03376 | 0 | 10 | -3.493953 | ATP-dependent zinc protease | |
| PAKAF_03377 | 0 | 9 | -3.452270 | hypothetical protein | |
| PAKAF_03378 | 1 | 10 | -3.129719 | alpha-L-glutamate ligase-like protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03367 | OMPADOMAIN | 163 | 1e-49 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03374 | PHPHTRNFRASE | 317 | e-101 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| 45 | PAKAF_03393 | PAKAF_03409 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03393 | 2 | 12 | -2.577374 | thioredoxin family protein | |
| PAKAF_03394 | 1 | 11 | -2.342800 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
| PAKAF_03395 | 0 | 15 | -1.093796 | N-acetyltransferase | |
| PAKAF_03396 | 1 | 14 | -0.747272 | probable enoyl-CoA hydratase/isomerase | |
| PAKAF_03397 | -1 | 13 | -0.572906 | hypothetical protein | |
| PAKAF_03398 | -2 | 13 | -0.596962 | macro domain-containing protein | |
| PAKAF_03399 | -1 | 11 | 0.756017 | hypothetical protein | |
| PAKAF_03400 | 0 | 12 | 0.744715 | hypothetical protein | |
| PAKAF_03401 | 3 | 13 | 0.704430 | hypothetical protein | |
| PAKAF_03402 | 3 | 9 | 0.030104 | probable amidotransferase | |
| PAKAF_03403 | 3 | 8 | 0.288960 | hypothetical protein | |
| PAKAF_03404 | 4 | 9 | 0.222020 | hypothetical protein | |
| PAKAF_03405 | 2 | 9 | -0.555092 | probable oxidoreductase | |
| PAKAF_03406 | 1 | 7 | -0.246042 | probable transcriptional regulator | |
| PAKAF_03407 | -1 | 9 | -0.259471 | probable 3-hydroxyacyl-CoA dehydrogenase | |
| PAKAF_03408 | 1 | 11 | 0.809085 | probable acyl-CoA thiolase | |
| PAKAF_03409 | 2 | 13 | 0.831314 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03398 | CHLAMIDIAOM6 | 29 | 0.015 | Chlamydia cysteine-rich outer membrane protein 6 si... | |
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03402 | PF05704 | 29 | 0.012 | Capsular polysaccharide synthesis protein | |
>PF05704#Capsular polysaccharide synthesis protein | |||||
| 46 | PAKAF_03432 | PAKAF_03451 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03432 | 2 | 24 | -2.739046 | transcriptional regulator ExsA | |
| PAKAF_03433 | 2 | 21 | -1.016333 | exoenzyme S synthesis protein B | |
| PAKAF_03434 | 2 | 18 | -1.497757 | ExsE | |
| PAKAF_03435 | 2 | 17 | -1.507800 | ExsC, exoenzyme S synthesis protein C precursor | |
| PAKAF_03436 | 2 | 15 | -0.672302 | Translocator outer membrane protein PopD | |
| PAKAF_03437 | 3 | 13 | -0.989206 | translocator protein PopB | |
| PAKAF_03438 | 3 | 14 | -0.536532 | regulatory protein PcrH | |
| PAKAF_03439 | 4 | 15 | 0.044286 | type III secretion protein PcrV | |
| PAKAF_03440 | 5 | 16 | 1.066539 | regulator in type III secretion | |
| PAKAF_03441 | 5 | 15 | 0.560699 | transcriptional regulator protein PcrR | |
| PAKAF_03442 | 5 | 15 | 0.768666 | type III secretory apparatus protein PcrD | |
| PAKAF_03443 | 3 | 11 | 2.437314 | conserved hypothetical protein in type III | |
| PAKAF_03444 | 2 | 11 | 2.325628 | YscX family type III secretion protein | |
| PAKAF_03445 | 3 | 15 | 2.779575 | type III secretion chaperone SycN | |
| PAKAF_03446 | 2 | 16 | 2.849249 | TyeA family type III secretion system gatekeeper | |
| PAKAF_03447 | 1 | 15 | 2.400556 | Type III secretion outer membrane protein PopN | |
| PAKAF_03448 | 0 | 15 | 2.055314 | ATP synthase in type III secretion system | |
| PAKAF_03449 | 3 | 17 | 1.532271 | translocation protein in type III secretion | |
| PAKAF_03450 | 3 | 17 | 0.472186 | translocation protein in type III secretion | |
| PAKAF_03451 | 2 | 11 | -1.138468 | translocation protein in type III secretion |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03435 | PF05932 | 47 | 6e-10 | Tir chaperone protein (CesT) | |
>PF05932#Tir chaperone protein (CesT) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03436 | PF05844 | 385 | e-137 | YopD protein | |
>PF05844#YopD protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03438 | SYCDCHAPRONE | 202 | 2e-69 | Gram-negative bacterial type III secretion SycD cha... | |
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03439 | LCRVANTIGEN | 344 | e-121 | Low calcium response V antigen signature. | |
>LCRVANTIGEN#Low calcium response V antigen signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03447 | PF07201 | 284 | 4e-98 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03450 | IGASERPTASE | 43 | 2e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03451 | TYPE3OMOPROT | 84 | 2e-20 | Type III secretion system outer membrane O protein ... | |
>TYPE3OMOPROT#Type III secretion system outer membrane O protein | |||||
| 47 | PAKAF_03560 | PAKAF_03570 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03560 | 2 | 24 | -3.290741 | succinyl-CoA synthetase alpha chain | |
| PAKAF_03561 | 2 | 24 | -3.083872 | succinyl-CoA synthetase beta chain | |
| PAKAF_03563 | 3 | 23 | -3.116489 | lipoamide dehydrogenase-glc | |
| PAKAF_03564 | 2 | 22 | -3.540186 | dihydrolipoamide succinyltransferase (E2 | |
| PAKAF_03565 | 2 | 19 | -4.276840 | 2-oxoglutarate dehydrogenase (E1 subunit) | |
| PAKAF_03567 | 2 | 17 | -4.550252 | succinate dehydrogenase (B subunit) | |
| PAKAF_03568 | 1 | 17 | -4.079617 | succinate dehydrogenase (A subunit) | |
| PAKAF_03569 | -1 | 13 | -3.310071 | succinate dehydrogenase (D subunit) | |
| PAKAF_03570 | -2 | 10 | -3.111943 | succinate dehydrogenase (C subunit) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03563 | ABC2TRNSPORT | 30 | 0.024 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| 48 | PAKAF_03593 | PAKAF_03598 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03593 | 4 | 15 | -2.756528 | hypothetical protein | |
| PAKAF_03594 | 5 | 18 | -3.887680 | Cytochrome c oxidase, cbb3-type, CcoN subunit | |
| PAKAF_03595 | 3 | 18 | -4.566329 | Cytochrome c oxidase, cbb3-type, CcoO subunit | |
| PAKAF_03596 | 3 | 19 | -4.039508 | Cytochrome c oxidase, cbb3-type, CcoQ subunit | |
| PAKAF_03597 | 2 | 17 | -3.763768 | Cytochrome c oxidase, cbb3-type, CcoP subunit | |
| PAKAF_03598 | 2 | 16 | -3.728082 | Cytochrome c oxidase, cbb3-type, CcoN subunit |
| 49 | PAKAF_03619 | PAKAF_03628 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03619 | -1 | 26 | -4.050535 | recombination protein RecR | |
| PAKAF_03620 | 0 | 29 | -5.551919 | YbaB/EbfC family nucleoid-associated protein | |
| PAKAF_03621 | 0 | 32 | -5.843071 | DNA polymerase subunits gamma and tau | |
| PAKAF_03622 | 2 | 50 | -11.289812 | DNA polymerase subunits gamma and tau | |
| PAKAF_03623 | 4 | 67 | -15.368681 | integrase family protein,Site-specific | |
| PAKAF_03624 | 3 | 66 | -15.586170 | hypothetical protein | |
| PAKAF_03625 | -2 | 34 | -8.210802 | hypothetical protein | |
| PAKAF_03626 | -2 | 28 | -6.527054 | transposon resolvase,Putative DNA-invertase from | |
| PAKAF_03627 | 0 | 18 | -3.965892 | hypothetical protein | |
| PAKAF_03628 | 0 | 15 | -3.175885 | ATPase domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03621 | PF03544 | 40 | 1e-05 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03623 | SURFACELAYER | 30 | 0.020 | Lactobacillus surface layer protein signature. | |
>SURFACELAYER#Lactobacillus surface layer protein signature. | |||||
| 50 | PAKAF_03646 | PAKAF_03654 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03646 | 1 | 14 | -3.354320 | allantoicase | |
| PAKAF_03647 | 0 | 24 | -5.670359 | ureidoglycolate hydrolaseYbbT | |
| PAKAF_03648 | 1 | 25 | -5.646221 | urate hydroxylase PuuD | |
| PAKAF_03649 | 1 | 23 | -5.235506 | secreted protein Hcp | |
| PAKAF_03650 | 0 | 25 | -5.143033 | VgrG2a | |
| PAKAF_03651 | 2 | 28 | -6.043487 | Tle4 | |
| PAKAF_03652 | 0 | 16 | -3.941369 | Tli4 | |
| PAKAF_03653 | 3 | 8 | -0.089256 | PAAR domain-containing protein | |
| PAKAF_03654 | 2 | 12 | 0.106547 | probable transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03653 | OMADHESIN | 25 | 0.048 | Yersinia outer membrane adhesin signature. | |
>OMADHESIN#Yersinia outer membrane adhesin signature. | |||||
| 51 | PAKAF_03682 | PAKAF_03688 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03682 | 2 | 10 | 0.559605 | cytochrome C-type biogenesis protein CcmF | |
| PAKAF_03683 | 7 | 11 | 0.502616 | cytochrome C-type biogenesis protein CcmE | |
| PAKAF_03684 | 6 | 10 | 0.849572 | heme exporter protein CcmD | |
| PAKAF_03685 | 6 | 10 | 0.637000 | heme exporter protein CcmC | |
| PAKAF_03686 | 8 | 11 | 1.259038 | heme exporter protein CcmB | |
| PAKAF_03687 | 5 | 10 | 1.828808 | heme exporter protein CcmA | |
| PAKAF_03688 | 2 | 9 | 1.700921 | flagellar hook-length control protein FliK |
| 52 | PAKAF_03709 | PAKAF_03715 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03709 | 2 | 17 | 0.709487 | flagellar biosynthesis protein FlhF | |
| PAKAF_03710 | 2 | 17 | 0.268645 | flagellar biosynthesis protein FlhA | |
| PAKAF_03711 | 3 | 20 | 0.340276 | YgcG family protein | |
| PAKAF_03712 | 4 | 19 | 0.195674 | Beta-propeller domains of methanol dehydrogenase | |
| PAKAF_03713 | 6 | 19 | -0.542127 | flagellar biosynthetic protein FlhB | |
| PAKAF_03714 | 5 | 19 | -1.250198 | flagellar biosynthetic protein FliR | |
| PAKAF_03715 | 3 | 17 | -1.720443 | flagellar biosynthetic protein FliQ |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03711 | cloacin | 30 | 0.021 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03712 | cloacin | 36 | 2e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03713 | TYPE3IMSPROT | 336 | e-116 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03714 | TYPE3IMRPROT | 135 | 7e-41 | Type III secretion system inner membrane R protein ... | |
>TYPE3IMRPROT#Type III secretion system inner membrane R protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03715 | TYPE3IMQPROT | 55 | 9e-14 | Type III secretion system inner membrane Q protein ... | |
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein | |||||
| 53 | PAKAF_03754 | PAKAF_03784 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03754 | 2 | 10 | 2.161511 | mechanosensitive ion channel family protein | |
| PAKAF_03755 | 3 | 9 | 2.002986 | methyltransferase | |
| PAKAF_03756 | 3 | 10 | 1.737702 | nucleotidyltransferase domain- containing | |
| PAKAF_03757 | 0 | 11 | 2.778428 | probable helicase | |
| PAKAF_03758 | 0 | 11 | 3.166557 | hypothetical protein | |
| PAKAF_03759 | 0 | 11 | 3.215648 | probable transcriptional regulator | |
| PAKAF_03760 | -1 | 13 | 0.889798 | O-methyltransferase | |
| PAKAF_03761 | 0 | 18 | -0.605352 | hypothetical protein | |
| PAKAF_03762 | 3 | 23 | -2.075402 | probable pyruvate carboxylase | |
| PAKAF_03763 | 5 | 34 | -5.163788 | probable transcriptional regulator | |
| PAKAF_03764 | 5 | 37 | -6.491777 | hypothetical protein | |
| PAKAF_03765 | 4 | 36 | -6.133211 | lipase family protein,Predicted lipase,Lipase | |
| PAKAF_03766 | 2 | 26 | -4.626588 | lipoprotein | |
| PAKAF_03767 | 1 | 22 | -3.702700 | lipoprotein | |
| PAKAF_03768 | 0 | 19 | -1.856658 | hypothetical protein | |
| PAKAF_03769 | -2 | 19 | -2.935009 | Rhs element Vgr protein,Uncharacterized protein | |
| PAKAF_03770 | 0 | 24 | -2.642581 | probable two-component response regulator | |
| PAKAF_03771 | -2 | 29 | -3.031694 | probable two-component sensor | |
| PAKAF_03772 | 0 | 41 | -5.005691 | hypothetical protein | |
| PAKAF_05930 | 0 | 43 | -5.059869 | hypothetical protein | |
| PAKAF_03773 | 1 | 43 | -5.791949 | adenosine 5'-phosphosulfate (APS) kinase | |
| PAKAF_03774 | 0 | 43 | -5.784065 | sulfotransferase family protein | |
| PAKAF_03775 | 1 | 45 | -7.033558 | probable glycosyl transferase | |
| PAKAF_03776 | 1 | 52 | -9.286273 | probable glycosyl transferase | |
| PAKAF_03777 | 2 | 54 | -9.837785 | probable glycosyl transferase | |
| PAKAF_03778 | 2 | 51 | -10.350570 | glycosyltransferase family 2 protein | |
| PAKAF_03779 | 2 | 49 | -9.833718 | hypothetical protein | |
| PAKAF_03780 | 2 | 50 | -10.059715 | probable ATP-binding component of ABC | |
| PAKAF_03781 | 1 | 44 | -8.013351 | probable glycosyl transferase | |
| PAKAF_03782 | 0 | 33 | -5.786452 | UDP-glucose 4-epimerase | |
| PAKAF_03783 | 1 | 27 | -4.930723 | hypothetical protein | |
| PAKAF_03784 | -2 | 24 | -3.177540 | probable type II secretion system protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03754 | RTXTOXIND | 41 | 2e-05 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03759 | HTHTETR | 58 | 1e-12 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03762 | RTXTOXIND | 36 | 8e-04 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03769 | ICENUCLEATIN | 30 | 0.040 | Ice nucleation protein signature. | |
>ICENUCLEATIN#Ice nucleation protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03770 | HTHFIS | 58 | 5e-12 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03771 | HTHFIS | 50 | 2e-08 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03782 | NUCEPIMERASE | 181 | 1e-56 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03784 | BCTERIALGSPD | 198 | 1e-56 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| 54 | PAKAF_03844 | PAKAF_03854 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03844 | 2 | 11 | -0.427285 | SgcJ/EcaC family oxidoreductase | |
| PAKAF_03846 | 2 | 10 | -1.008310 | hypothetical protein | |
| PAKAF_03847 | 2 | 12 | -1.943643 | DUF883 domain-containing protein | |
| PAKAF_03848 | 2 | 12 | -2.543434 | probable TonB-dependent receptor | |
| PAKAF_03849 | 3 | 12 | -1.910200 | cytochrome o ubiquinol oxidase protein CyoE | |
| PAKAF_03850 | 2 | 11 | -1.920067 | cytochrome o ubiquinol oxidase subunit IV | |
| PAKAF_03851 | 1 | 11 | -1.646848 | cytochrome o ubiquinol oxidase subunit III | |
| PAKAF_03852 | 2 | 10 | -0.623448 | cytochrome o ubiquinol oxidase subunit I | |
| PAKAF_03853 | 2 | 11 | 1.152701 | cytochrome o ubiquinol oxidase subunit II | |
| PAKAF_03854 | 2 | 12 | 2.119282 | probable major facilitator superfamily (MFS) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03848 | ENTEROVIROMP | 29 | 0.034 | Enterobacterial virulence outer membrane protein si... | |
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03854 | TCRTETB | 108 | 2e-27 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 55 | PAKAF_03871 | PAKAF_03917 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03871 | 3 | 9 | 0.028598 | YcgN family cysteine cluster protein | |
| PAKAF_03872 | 2 | 8 | 0.181810 | Transcriptional repressor RcnR | |
| PAKAF_03873 | 0 | 9 | 0.751329 | probable metal transporter | |
| PAKAF_03874 | -2 | 11 | 0.625556 | probable 2-hydroxyacid dehydrogenase | |
| PAKAF_03875 | -1 | 12 | 0.135535 | conserved hypothetical protein | |
| PAKAF_03876 | -1 | 10 | 0.775375 | ribonuclease D | |
| PAKAF_03877 | 1 | 12 | -0.283329 | SMP-30/gluconolactonase/LRE family protein | |
| PAKAF_03878 | 1 | 11 | -0.470388 | probable 3-mercaptopyruvate sulfurtransferase | |
| PAKAF_03879 | 2 | 9 | 0.083315 | alpha/beta fold hydrolase | |
| PAKAF_03880 | 2 | 10 | 0.214516 | probable transcriptional regulator | |
| PAKAF_03881 | 1 | 12 | 0.297895 | hypothetical protein | |
| PAKAF_03882 | 0 | 10 | -0.011318 | probable outer membrane protein precursor | |
| PAKAF_03883 | -1 | 9 | 1.774878 | probable glutathione peroxidase | |
| PAKAF_03884 | -1 | 10 | 2.447320 | probable major facilitator superfamily (MFS) | |
| PAKAF_03885 | -1 | 8 | 2.279450 | probable transcriptional regulator | |
| PAKAF_03886 | -1 | 9 | 3.180696 | probable acyl-CoA dehydrogenase | |
| PAKAF_03887 | 1 | 12 | 4.590022 | probable transcriptional regulator | |
| PAKAF_03888 | 2 | 11 | 4.910441 | probable major facilitator superfamily (MFS) | |
| PAKAF_03889 | 3 | 12 | 5.392522 | cobalamin (5'-phosphate) synthase | |
| PAKAF_03890 | 2 | 11 | 5.597764 | alpha-ribazole phosphatase family protein | |
| PAKAF_03891 | 3 | 12 | 5.663496 | nicotinate-nucleotide--dimethylbenzimidazole | |
| PAKAF_03892 | 1 | 10 | 4.998807 | cobinamide kinase | |
| PAKAF_03893 | 1 | 9 | 4.533904 | cobyric acid synthase | |
| PAKAF_03894 | -1 | 8 | 3.212572 | cobalamin biosynthetic protein CobC | |
| PAKAF_03895 | 0 | 9 | 3.424674 | cobalamin biosynthetic protein CobD | |
| PAKAF_03896 | -1 | 8 | 2.585700 | 5,6-dimethylbenzimidazole synthase | |
| PAKAF_03897 | -2 | 7 | 2.619581 | cobyrinic acid a,c-diamide synthase | |
| PAKAF_03898 | -2 | 8 | 2.839530 | cob(I)alamin adenosyltransferase | |
| PAKAF_03899 | -1 | 9 | 3.872329 | probable tonB-dependent receptor | |
| PAKAF_03901 | 2 | 8 | 5.271935 | FUSC family protein | |
| PAKAF_03902 | 1 | 11 | 5.341430 | probable transcriptional regulator | |
| PAKAF_03903 | 1 | 9 | 5.524511 | 4-hydroxyproline epimerase | |
| PAKAF_03904 | 2 | 9 | 5.489716 | hypothetical protein | |
| PAKAF_03906 | 2 | 7 | 5.141864 | probable oxidoreductase | |
| PAKAF_03907 | 1 | 9 | 3.705529 | DMT family transporter | |
| PAKAF_03908 | -1 | 11 | 3.856961 | probable transcriptional regulator | |
| PAKAF_03909 | -1 | 13 | 3.260829 | helix-turn-helix domain-containing protein | |
| PAKAF_03910 | 0 | 14 | 3.238737 | probable major facilitator superfamily (MFS) | |
| PAKAF_03911 | 0 | 14 | 2.390449 | probable transcriptional regulator | |
| PAKAF_03912 | 1 | 16 | 2.518101 | amino acid ABC transporter periplasmic binding | |
| PAKAF_03913 | 2 | 16 | 2.539959 | DUF521 domain-containing protein | |
| PAKAF_03914 | 1 | 14 | 2.425217 | probable permease of ABC transporter | |
| PAKAF_03915 | 1 | 10 | 2.628022 | amino acid ABC transporter membrane protein | |
| PAKAF_03916 | 3 | 10 | 2.836471 | amino acid ABC transporter ATP binding protein | |
| PAKAF_03917 | 1 | 9 | 3.072398 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03875 | SSPAMPROTEIN | 27 | 0.007 | Salmonella surface presentation of antigen gene typ... | |
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03880 | HTHTETR | 76 | 2e-19 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03884 | TCRTETB | 44 | 4e-07 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03887 | HTHTETR | 54 | 2e-11 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03888 | TCRTETB | 195 | 9e-59 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03899 | PF00577 | 30 | 0.032 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03901 | ACRIFLAVINRP | 30 | 0.047 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03904 | NUCEPIMERASE | 29 | 0.024 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03910 | TCRTETB | 110 | 2e-28 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| 56 | PAKAF_03932 | PAKAF_03948 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03932 | 2 | 12 | 4.448262 | probable transcriptional regulator | |
| PAKAF_03933 | 1 | 11 | 5.538816 | probable enoyl-CoA hydratase/isomerase | |
| PAKAF_03934 | 1 | 11 | 4.680189 | alpha/beta fold hydrolase | |
| PAKAF_03935 | 1 | 9 | 4.721762 | hypothetical protein | |
| PAKAF_03936 | 1 | 11 | 4.418412 | hypothetical protein | |
| PAKAF_03937 | 1 | 11 | 4.215921 | probable outer membrane component of multidrug | |
| PAKAF_03938 | 1 | 13 | 3.238908 | probable multidrug resistance efflux pump | |
| PAKAF_03939 | 1 | 14 | 2.518785 | probable major facilitator superfamily (MFS) | |
| PAKAF_03940 | 0 | 17 | 2.542453 | probable transcriptional regulator | |
| PAKAF_03941 | 0 | 15 | 2.111252 | thioredoxin family protein | |
| PAKAF_03942 | 0 | 14 | 2.465336 | DUF2790 domain-containing protein | |
| PAKAF_03943 | 1 | 14 | 2.654013 | FUSC family protein | |
| PAKAF_03944 | -1 | 13 | 2.404349 | HlyD family secretion protein | |
| PAKAF_03945 | 1 | 14 | 2.306225 | DUF1656 domain-containing protein | |
| PAKAF_03946 | 2 | 12 | 2.286307 | probable transcriptional regulator | |
| PAKAF_03947 | 3 | 12 | 2.862419 | hypothetical protein | |
| PAKAF_03948 | 3 | 10 | 2.529728 | aminoglycoside phosphotransferase family |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03932 | HTHTETR | 45 | 3e-08 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03938 | RTXTOXIND | 121 | 1e-32 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03939 | TCRTETB | 109 | 6e-28 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03940 | HTHFIS | 33 | 9e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03944 | RTXTOXIND | 65 | 6e-14 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 57 | PAKAF_04079 | PAKAF_04091 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04079 | -1 | 12 | -3.244304 | transcriptional regulator FleQ | |
| PAKAF_04080 | 1 | 18 | -4.206880 | flagellar assembly protein FliT | |
| PAKAF_04081 | -1 | 15 | -1.854410 | flagellar protein FliS,Flagellar protein | |
| PAKAF_04082 | -1 | 18 | -1.959464 | flagellar protein,Flagellar protein | |
| PAKAF_04083 | -2 | 20 | -3.236747 | flagellar cap protein,Flagellar cap | |
| PAKAF_04084 | -1 | 25 | -3.192797 | FlaG,flagellar protein FlaG,FlaG protein | |
| PAKAF_04085 | -1 | 26 | -3.627525 | flagellin type B,A-type | |
| PAKAF_04086 | -1 | 31 | -4.215002 | O-antigen biosynthesis protein,Chondroitin | |
| PAKAF_04087 | 1 | 42 | -7.909942 | hypothetical protein | |
| PAKAF_04088 | 1 | 37 | -7.276070 | 3-demethylubiquinone-9 | |
| PAKAF_04089 | 0 | 30 | -5.880432 | hypothetical protein | |
| PAKAF_04090 | 0 | 25 | -4.941410 | CMP-2-keto-3-deoxyoctulosonic acid | |
| PAKAF_04091 | 0 | 24 | -4.330778 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04079 | HTHFIS | 510 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04085 | FLAGELLIN | 159 | 5e-46 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| 58 | PAKAF_04103 | PAKAF_04111 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04103 | 3 | 14 | -1.683982 | flagellar P-ring protein precursor FlgI | |
| PAKAF_04104 | 3 | 14 | -2.497347 | flagellar L-ring protein precursor FlgH | |
| PAKAF_04105 | 3 | 14 | -2.990902 | flagellar basal-body rod protein FlgG | |
| PAKAF_04106 | 0 | 13 | -3.264497 | flagellar basal-body rod protein FlgF | |
| PAKAF_04107 | 1 | 12 | -3.251842 | flagellar hook protein FlgE | |
| PAKAF_04108 | 0 | 14 | -3.599933 | flagellar basal-body rod modification protein | |
| PAKAF_04109 | 0 | 13 | -3.549588 | flagellar basal-body rod protein FlgC | |
| PAKAF_04110 | 1 | 13 | -2.822366 | flagellar basal-body rod protein FlgB | |
| PAKAF_04111 | 2 | 13 | -2.530546 | DUF5064 family protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04103 | FLGPRINGFLGI | 436 | e-155 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04104 | FLGLRINGFLGH | 180 | 3e-59 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04105 | FLGHOOKAP1 | 45 | 2e-07 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04107 | FLGHOOKAP1 | 45 | 5e-07 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04109 | FLGHOOKAP1 | 36 | 3e-05 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 59 | PAKAF_04126 | PAKAF_04132 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04126 | 2 | 10 | 0.377141 | PLP-dependent cysteine synthase family protein | |
| PAKAF_04127 | 3 | 9 | 0.392950 | DMT family transporter | |
| PAKAF_04128 | 3 | 13 | 0.105137 | Na+/H+ antiporter subunit G | |
| PAKAF_04129 | 3 | 12 | 0.417861 | K+/H+ antiporter subunit F | |
| PAKAF_04130 | 2 | 11 | 1.409027 | Na+/H+ antiporter subunit E | |
| PAKAF_04131 | 1 | 11 | 1.293830 | probable NADH dehydrogenase | |
| PAKAF_04132 | 2 | 11 | 1.520945 | Na+/H+ antiporter subunit C |
| 60 | PAKAF_04193 | PAKAF_04232 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04193 | 0 | 22 | -3.737363 | 3-oxoacyl-[acyl-carrier-protein] synthase III | |
| PAKAF_04194 | 2 | 29 | -5.352018 | PqsC | |
| PAKAF_04195 | 3 | 33 | -6.017611 | PqsB | |
| PAKAF_04196 | 4 | 37 | -7.135709 | probable coenzyme A ligase | |
| PAKAF_04197 | 5 | 43 | -8.833429 | methylated-DNA--protein-cysteine | |
| PAKAF_04198 | 4 | 38 | -8.754558 | usher CupC3 | |
| PAKAF_04199 | 3 | 43 | -9.066552 | chaperone CupC2 | |
| PAKAF_04200 | 1 | 34 | -6.987471 | fimbrial subunit CupC1 | |
| PAKAF_04201 | 1 | 35 | -6.385108 | Hpt domain-containing protein | |
| PAKAF_04202 | 1 | 31 | -6.015677 | NUDIX hydrolase | |
| PAKAF_04203 | 0 | 35 | -7.247524 | hypothetical protein | |
| PAKAF_04204 | 1 | 41 | -7.528335 | acyl-CoA thioesterase | |
| PAKAF_04205 | 0 | 39 | -7.172072 | IS3 family transposase | |
| PAKAF_04205 | 0 | 38 | -7.239865 | IS3 family transposase | |
| PAKAF_04206 | 2 | 37 | -6.786870 | transposase A,Transposase | |
| PAKAF_04207 | 1 | 35 | -6.299189 | relaxase,Predicted HD-superfamily | |
| PAKAF_04208 | 0 | 23 | -4.548841 | PA0977 ortholog, hypothetical protein | |
| PAKAF_04210 | 0 | 20 | -4.403309 | *7-cyano-7-deazaguanine synthase QueC | |
| PAKAF_04211 | 1 | 20 | -4.906149 | probable radical activating enzyme | |
| PAKAF_04212 | 1 | 20 | -4.572427 | tol-pal system protein YbgF | |
| PAKAF_04213 | 0 | 21 | -5.099523 | Peptidoglycan associated lipoprotein OprL | |
| PAKAF_04214 | 1 | 19 | -4.841498 | TolB protein | |
| PAKAF_04215 | 1 | 23 | -4.990618 | TolA protein | |
| PAKAF_04216 | 1 | 24 | -4.387962 | TolR protein | |
| PAKAF_04217 | 1 | 22 | -4.051332 | TolQ protein | |
| PAKAF_04218 | 1 | 17 | -3.696975 | tol-pal system-associated acyl-CoA thioesterase | |
| PAKAF_04219 | 1 | 14 | -3.543754 | Holliday junction DNA helicase RuvB | |
| PAKAF_04220 | 1 | 14 | -3.331326 | Holliday junction DNA helicase RuvA | |
| PAKAF_04221 | 1 | 13 | -3.239201 | Holliday junction resolvase RuvC | |
| PAKAF_04222 | 0 | 13 | -3.283673 | pqsR-mediated PQS regulator, PmpR | |
| PAKAF_04223 | -1 | 12 | -3.205742 | aspartyl-tRNA synthetase | |
| PAKAF_04224 | -1 | 16 | -3.476422 | probable dna-binding stress protein | |
| PAKAF_04225 | -2 | 13 | -3.236286 | probable cold-shock protein | |
| PAKAF_04226 | -2 | 11 | -3.239503 | protein SlyX | |
| PAKAF_04227 | -1 | 11 | -2.940249 | HIT domain-containing protein | |
| PAKAF_04228 | -1 | 11 | -3.003471 | Basic amino acid, basic peptide and imipenem | |
| PAKAF_04229 | -1 | 15 | -2.834326 | PaaI family thioesterase | |
| PAKAF_04230 | -1 | 14 | -2.841007 | prolyl-tRNA synthetase | |
| PAKAF_04231 | -1 | 24 | -3.236704 | hypothetical protein | |
| PAKAF_04232 | 1 | 29 | -3.351359 | probable acylphosphatase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04193 | PF04183 | 30 | 0.016 | IucA / IucC family | |
>PF04183#IucA / IucC family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04198 | PF00577 | 792 | 0.0 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04212 | RTXTOXIND | 32 | 0.002 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04213 | OMPADOMAIN | 116 | 6e-34 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04215 | IGASERPTASE | 48 | 4e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04217 | 60KDINNERMP | 29 | 0.017 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04223 | ANTHRAXTOXNA | 32 | 0.009 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04224 | HELNAPAPROT | 157 | 3e-52 | Helicobacter neutrophil-activating protein A family ... | |
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04230 | ANTHRAXTOXNA | 30 | 0.031 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
| 61 | PAKAF_04242 | PAKAF_04250 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04242 | -2 | 16 | -3.620673 | phosphoribosylaminoimidazole synthetase | |
| PAKAF_04243 | -1 | 23 | -4.596196 | phosphoribosylaminoimidazole synthetase | |
| PAKAF_04244 | 0 | 22 | -5.611012 | DUF3108 domain-containing protein | |
| PAKAF_04245 | 1 | 28 | -5.089067 | probable transcriptional regulator | |
| PAKAF_04246 | 2 | 25 | -5.818742 | thioredoxin family protein | |
| PAKAF_04247 | 3 | 19 | -5.303042 | DUF2024 family protein | |
| PAKAF_04248 | 4 | 18 | -4.786873 | hypothetical protein | |
| PAKAF_04249 | 1 | 14 | -4.015989 | hypothetical protein | |
| PAKAF_04250 | 1 | 16 | -3.097987 | hypothetical protein |
| 62 | PAKAF_04367 | PAKAF_04411 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04367 | 1 | 31 | -5.042173 | probable transcriptional regulator | |
| PAKAF_04368 | 1 | 34 | -7.312304 | hypothetical protein | |
| PAKAF_04370 | 1 | 44 | -9.831193 | hypothetical protein | |
| PAKAF_04371 | 1 | 37 | -10.165590 | hypothetical protein | |
| PAKAF_04372 | 2 | 31 | -9.761297 | von Willebrand factor type A domain-containing | |
| PAKAF_04373 | 2 | 26 | -9.221202 | phospholipase D/transphosphatidylase | |
| PAKAF_04374 | 2 | 28 | -9.313253 | SMC domain-containing protein,recombination | |
| PAKAF_04375 | 2 | 29 | -9.362044 | type I restriction modification enzyme | |
| PAKAF_04376 | 1 | 27 | -8.184155 | type I restriction modification enzyme methylase | |
| PAKAF_04377 | 1 | 32 | -8.460296 | RmuC domain-containing protein family,DNA | |
| PAKAF_04378 | -1 | 36 | -8.840058 | helicase, type I site-specific | |
| PAKAF_04379 | -1 | 51 | -9.443353 | putative two-component response | |
| PAKAF_04380 | 0 | 48 | -9.665698 | hypothetical protein | |
| PAKAF_04381 | -1 | 46 | -8.827277 | lipopolysaccharide heptosyltransferase | |
| PAKAF_04382 | 1 | 42 | -9.009698 | hypothetical protein | |
| PAKAF_04383 | 1 | 42 | -8.913937 | hypothetical protein | |
| PAKAF_04384 | 1 | 44 | -8.979027 | Histidinol-phosphatase,histidinol-phosphatase, | |
| PAKAF_04385 | 2 | 43 | -8.880331 | hypothetical protein | |
| PAKAF_04386 | 2 | 43 | -8.534395 | hypothetical protein | |
| PAKAF_04387 | 1 | 43 | -8.584639 | helicase domain-containing protein,ATP-dependent | |
| PAKAF_04388 | 1 | 47 | -8.415088 | hypothetical protein | |
| PAKAF_04389 | 0 | 49 | -9.086097 | Uncharacterized protein conserved in | |
| PAKAF_04390 | 0 | 54 | -10.779891 | Uncharacterized protein conserved in | |
| PAKAF_04391 | 0 | 61 | -12.607822 | hypothetical protein | |
| PAKAF_04392 | -1 | 60 | -12.626815 | Protein of unknown function (DUF3375) | |
| PAKAF_04393 | 2 | 61 | -13.548183 | Predicted transcriptional regulator | |
| PAKAF_04394 | 3 | 58 | -12.544272 | hypothetical protein | |
| PAKAF_04395 | 3 | 44 | -10.659151 | hypothetical protein | |
| PAKAF_04396 | -1 | 17 | -0.437512 | hypothetical protein | |
| PAKAF_04397 | 0 | 13 | 0.973988 | resolvase,Putative transposon Tn552 | |
| PAKAF_05934 | 1 | 15 | 2.944117 | hypothetical protein | |
| PAKAF_04398 | 2 | 15 | 3.997488 | hypothetical protein | |
| PAKAF_04399 | 1 | 14 | 3.375937 | probable ring-cleaving dioxygenase | |
| PAKAF_04400 | 1 | 14 | 3.731899 | probable transcriptional regulator | |
| PAKAF_04401 | 2 | 13 | 3.557746 | probable transcriptional regulator | |
| PAKAF_04402 | 3 | 13 | 3.828612 | RidA family protein | |
| PAKAF_04403 | 1 | 11 | 3.067196 | aminotransferase class V-fold PLP- dependent | |
| PAKAF_04404 | 0 | 11 | 2.109532 | hypothetical protein | |
| PAKAF_04405 | 0 | 12 | 2.628068 | probable major facilitator superfamily (MFS) | |
| PAKAF_04406 | 0 | 10 | 1.285693 | probable haloacid dehalogenase | |
| PAKAF_04407 | -2 | 11 | 0.911740 | probable transporter | |
| PAKAF_04408 | -1 | 13 | -0.489505 | activator of HSP90 ATPase | |
| PAKAF_04409 | -1 | 11 | 0.041151 | AmpDh3 | |
| PAKAF_04410 | 2 | 11 | 1.299639 | hypothetical protein | |
| PAKAF_04411 | 2 | 11 | 1.292078 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04367 | HTHTETR | 53 | 6e-11 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04377 | GPOSANCHOR | 55 | 5e-10 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04379 | HTHFIS | 346 | e-116 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04390 | GPOSANCHOR | 37 | 6e-04 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04396 | PF04647 | 24 | 0.029 | Accessory gene regulator B | |
>PF04647#Accessory gene regulator B | |||||
| 63 | PAKAF_04476 | PAKAF_04481 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04476 | 2 | 12 | 1.835620 | hypothetical protein | |
| PAKAF_04477 | 3 | 11 | 1.807823 | NAD(P)-dependent oxidoreductase | |
| PAKAF_04478 | 4 | 10 | 1.205175 | SDS hydrolase SdsA1 | |
| PAKAF_04479 | 4 | 11 | 0.914092 | probable transcriptional regulator | |
| PAKAF_04480 | 2 | 12 | -0.023602 | hypothetical protein | |
| PAKAF_04481 | 3 | 12 | 0.262921 | DUF1145 domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04477 | NUCEPIMERASE | 33 | 8e-04 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 64 | PAKAF_04521 | PAKAF_04547 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04521 | 1 | 11 | 3.608110 | probable type II secretion system protein | |
| PAKAF_04522 | 0 | 11 | 3.045487 | probable type II secretion system protein | |
| PAKAF_04523 | -1 | 12 | 2.800255 | probable type II secretion system protein | |
| PAKAF_04524 | 2 | 18 | 3.038679 | probable type II secretion system protein | |
| PAKAF_04525 | 1 | 15 | 3.385404 | probable type II secretion system protein | |
| PAKAF_04526 | 1 | 16 | 2.876951 | HxcX atypical pseudopilin | |
| PAKAF_04527 | 1 | 14 | 3.158381 | HxcT pseudopilin | |
| PAKAF_04528 | -1 | 14 | 2.671338 | HxcV putative pseudopilin | |
| PAKAF_04529 | -1 | 16 | 2.877198 | hypothetical protein | |
| PAKAF_04530 | -1 | 15 | 2.392923 | HxcU putative pseudopilin | |
| PAKAF_04531 | 0 | 13 | 1.673753 | HxcW putative pseudopilin | |
| PAKAF_04532 | 0 | 14 | 0.947031 | sigma factor regulator, VreR | |
| PAKAF_04533 | 2 | 14 | 1.430199 | ECF sigma factor, VreI | |
| PAKAF_04534 | -1 | 13 | 1.091398 | VreA | |
| PAKAF_04535 | -1 | 14 | 0.571395 | hypothetical protein | |
| PAKAF_04536 | 3 | 14 | 0.431982 | heme oxygenase | |
| PAKAF_04537 | 2 | 12 | 1.201977 | hypothetical protein | |
| PAKAF_04538 | 2 | 9 | 1.591022 | DNA polymerase Y family protein | |
| PAKAF_04539 | 1 | 7 | 1.671625 | probable DNA polymerase alpha chain | |
| PAKAF_04542 | 2 | 8 | 2.123302 | **exonuclease SbcD,Nuclease sbcCD subunit | |
| PAKAF_04543 | 3 | 8 | 2.290235 | putative exonuclease,Nuclease sbcCD subunit | |
| PAKAF_04544 | 0 | 9 | 2.867419 | exodeoxyribonuclease V subunit | |
| PAKAF_04545 | 0 | 7 | 2.821282 | exodeoxyribonuclease V subunit | |
| PAKAF_04546 | 2 | 8 | 2.895960 | exodeoxyribonuclease V subunit | |
| PAKAF_04547 | 2 | 8 | 2.516953 | putative lipoate-protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04521 | BCTERIALGSPF | 378 | e-131 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04523 | BCTERIALGSPD | 256 | 4e-77 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04527 | BCTERIALGSPG | 167 | 1e-56 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04528 | BCTERIALGSPG | 30 | 0.001 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04530 | BCTERIALGSPH | 34 | 8e-05 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04531 | BCTERIALGSPG | 32 | 6e-04 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04539 | DHBDHDRGNASE | 31 | 0.023 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04543 | RTXTOXIND | 45 | 2e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 65 | PAKAF_04686 | PAKAF_04700 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04686 | 2 | 18 | -1.433234 | cell division protein FtsL | |
| PAKAF_04687 | 2 | 16 | -1.483637 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase | |
| PAKAF_04688 | 2 | 15 | -1.562521 | transcriptional regulator MraZ | |
| PAKAF_04690 | 1 | 14 | -1.387607 | methyltransferase | |
| PAKAF_04691 | 1 | 15 | -1.892166 | penicillin-binding protein activator | |
| PAKAF_04692 | 1 | 17 | -4.260818 | YraN family protein | |
| PAKAF_04693 | 1 | 13 | -5.106542 | sedoheptulose 7-phosphate isomerase GmhA | |
| PAKAF_04694 | 2 | 14 | -4.963480 | BON domain-containing protein | |
| PAKAF_04695 | 2 | 19 | -5.376638 | stringent starvation protein B | |
| PAKAF_04696 | 2 | 19 | -5.772440 | stringent starvation protein A | |
| PAKAF_04697 | 1 | 15 | -4.677245 | probable cytochrome c1 precursor | |
| PAKAF_04698 | 0 | 13 | -4.255068 | probable cytochrome b | |
| PAKAF_04699 | -1 | 12 | -3.100479 | probable iron-sulfur protein | |
| PAKAF_04700 | 0 | 11 | -3.057142 | 30S ribosomal protein S9 |
| 66 | PAKAF_04711 | PAKAF_04736 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04711 | 2 | 10 | -1.293738 | ATP sulfurylase small subunit | |
| PAKAF_04712 | 2 | 10 | -0.609684 | soluble and membrane-bound lytic | |
| PAKAF_04713 | 4 | 12 | -0.619317 | Nif3-like dinuclear metal center hexameric | |
| PAKAF_04714 | 4 | 12 | -0.888816 | AlgW protein | |
| PAKAF_04715 | 3 | 12 | -1.065602 | histidinol-phosphate aminotransferase | |
| PAKAF_04716 | 2 | 13 | -1.492378 | histidinol dehydrogenase | |
| PAKAF_04717 | -1 | 14 | -2.852572 | ATP-phosphoribosyltransferase | |
| PAKAF_04718 | -1 | 12 | -3.199687 | UDP-N-acetylglucosamine | |
| PAKAF_04719 | 0 | 12 | -3.594361 | BolA family transcriptional regulator | |
| PAKAF_04721 | 0 | 12 | -3.778016 | STAS domain-containing protein | |
| PAKAF_04722 | 2 | 12 | -3.824201 | phospholipid-binding protein MlaC | |
| PAKAF_04723 | 3 | 14 | -2.913502 | outer membrane lipid asymmetry maintenance | |
| PAKAF_04724 | 3 | 14 | -3.417871 | probable permease of ABC transporter | |
| PAKAF_04725 | 3 | 16 | -3.564119 | probable ATP-binding component of ABC | |
| PAKAF_04726 | 3 | 17 | -3.868940 | hypothetical protein | |
| PAKAF_04727 | 0 | 17 | -3.968025 | arabinose-5-phosphate isomerase KdsD | |
| PAKAF_04728 | 1 | 20 | -4.942004 | HAD family hydrolase | |
| PAKAF_04729 | 0 | 19 | -5.367773 | LPS export ABC transporter periplasmic protein | |
| PAKAF_04730 | 0 | 18 | -4.810676 | lipopolysaccharide transport periplasmic protein | |
| PAKAF_04731 | 0 | 18 | -4.794808 | probable ATP-binding component of ABC | |
| PAKAF_04732 | 0 | 16 | -3.406651 | RNA polymerase sigma-54 factor | |
| PAKAF_04733 | -1 | 14 | -2.504732 | ribosome-associated translation inhibitor RaiA | |
| PAKAF_04734 | -1 | 13 | -1.641579 | nitrogen regulatory IIA protein | |
| PAKAF_04735 | 1 | 12 | -1.471300 | RNase adapter RapZ | |
| PAKAF_04736 | 2 | 13 | -0.980327 | probable phosphoryl carrier protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04711 | TCRTETOQM | 28 | 0.046 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04714 | V8PROTEASE | 61 | 2e-12 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| 67 | PAKAF_04773 | PAKAF_04801 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04773 | 2 | 12 | 1.420218 | probable permease of ABC transporter | |
| PAKAF_04774 | 2 | 9 | 2.573299 | probable permease of ABC transporter | |
| PAKAF_04775 | 0 | 8 | 2.962780 | probable ATP-binding component of ABC | |
| PAKAF_04776 | -1 | 9 | 3.062723 | probable ATP-binding component of ABC dipeptide | |
| PAKAF_05938 | -1 | 12 | 1.743928 | hypothetical protein | |
| PAKAF_04779 | 0 | 9 | 1.847366 | probable transcriptional regulator | |
| PAKAF_04780 | 0 | 10 | -0.043359 | biotin-dependent carboxyltransferase family | |
| PAKAF_04781 | -1 | 10 | -0.664101 | 5-oxoprolinase subunit PxpB | |
| PAKAF_04782 | 0 | 9 | -0.614769 | LamB/YcsF family protein | |
| PAKAF_04783 | 0 | 8 | -1.452701 | lipopolysaccharide biosynthetic protein LpxO1 | |
| PAKAF_04784 | 0 | 8 | -1.058365 | probable oxidoreductase | |
| PAKAF_04785 | 1 | 9 | -3.189432 | probable outer membrane receptor for iron | |
| PAKAF_04786 | -2 | 7 | -2.026106 | PKHD-type hydroxylase PLES_48951 | |
| PAKAF_04787 | -2 | 7 | -1.567188 | sel1 repeat family protein | |
| PAKAF_04788 | -2 | 8 | -2.350818 | phosphoethanolamine transferase CptA | |
| PAKAF_04789 | -1 | 10 | -1.743075 | VOC family protein | |
| PAKAF_04790 | -1 | 8 | -1.523245 | ornithine decarboxylase | |
| PAKAF_04791 | -2 | 14 | -1.886629 | probable chemotaxis transducer | |
| PAKAF_04792 | -1 | 15 | -3.408344 | membrane protein | |
| PAKAF_04793 | 1 | 19 | -5.814121 | beta-lactamase expression regulator AmpD | |
| PAKAF_04794 | 0 | 18 | -5.556652 | DUF1631 domain-containing protein | |
| PAKAF_04795 | 0 | 22 | -6.650640 | nicotinate-nucleotide pyrophosphorylase | |
| PAKAF_05939 | 0 | 24 | -7.592283 | *type 4 fimbrial precursor PilA | |
| PAKAF_04797 | 1 | 19 | -6.354892 | type 4 fimbrial biogenesis protein PilB | |
| PAKAF_04798 | 2 | 20 | -5.548100 | type 4 fimbrial biogenesis protein PilC | |
| PAKAF_04799 | 2 | 14 | -1.263507 | type 4 prepilin peptidase PilD | |
| PAKAF_04800 | 0 | 17 | -0.936381 | dephosphocoenzyme A kinase | |
| PAKAF_04801 | 2 | 17 | -1.135914 | DNA gyrase inhibitor YacG |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04782 | PHPHTRNFRASE | 30 | 0.012 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04788 | SECYTRNLCASE | 32 | 0.004 | Preprotein translocase SecY subunit signature. | |
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04795 | RTXTOXIND | 29 | 0.021 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05939 | BCTERIALGSPG | 47 | 1e-09 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04798 | BCTERIALGSPF | 466 | e-167 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04799 | PREPILNPTASE | 354 | e-125 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04800 | DHBDHDRGNASE | 30 | 0.005 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| 68 | PAKAF_04823 | PAKAF_04829 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04823 | -1 | 17 | -3.116715 | probable D-amino acid oxidase | |
| PAKAF_04824 | 1 | 12 | -3.756730 | type 4 fimbrial biogenesis protein FimT | |
| PAKAF_04825 | 1 | 12 | -3.891266 | type 4 fimbrial biogenesis protein FimU | |
| PAKAF_04826 | 2 | 11 | -3.808838 | type 4 fimbrial biogenesis protein PilV | |
| PAKAF_04827 | 2 | 11 | -3.637635 | type 4 fimbrial biogenesis protein PilW | |
| PAKAF_04828 | 2 | 10 | -3.454617 | type 4 fimbrial biogenesis protein PilX | |
| PAKAF_04829 | 1 | 10 | -3.591139 | type 4 fimbrial biogenesis protein PilY1 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04824 | BCTERIALGSPG | 33 | 2e-04 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04825 | BCTERIALGSPG | 41 | 5e-07 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04826 | PilS_PF08805 | 30 | 0.003 | PilS N terminal | |
>PilS_PF08805#PilS N terminal | |||||
| 69 | PAKAF_04923 | PAKAF_04930 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04923 | 3 | 9 | -1.013297 | hypothetical protein | |
| PAKAF_04924 | 4 | 11 | -0.881728 | cupin fold metalloprotein, WbuC family | |
| PAKAF_04925 | 4 | 13 | -1.140826 | probable purine/pyrimidine phosphoribosyl | |
| PAKAF_04926 | 4 | 11 | 0.053269 | uracil phosphoribosyltransferase | |
| PAKAF_04927 | 4 | 14 | 0.540227 | uracil permease | |
| PAKAF_04928 | 7 | 17 | 0.815495 | Pilin subunit CupE1 | |
| PAKAF_04929 | 4 | 14 | 1.124316 | Pilin subunit CupE2 | |
| PAKAF_04930 | 3 | 12 | 1.166954 | Pilin subunit CupE3 |
| 70 | PAKAF_04948 | PAKAF_04970 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04948 | 2 | 19 | -3.727156 | lipoprotein localization protein LolB | |
| PAKAF_04949 | 3 | 20 | -5.253726 | isopentenyl monophosphate kinase | |
| PAKAF_04950 | 2 | 18 | -5.641115 | ribose-phosphate pyrophosphokinase | |
| PAKAF_04951 | 1 | 20 | -5.055510 | *probable ribosomal protein L25 | |
| PAKAF_04952 | 0 | 19 | -4.780230 | peptidyl-tRNA hydrolase | |
| PAKAF_04953 | 1 | 23 | -5.229138 | redox-regulated ATPase YchF | |
| PAKAF_04955 | 1 | 28 | -5.442629 | *integrase,Tyrosine recombinase | |
| PAKAF_04957 | 1 | 28 | -4.990697 | hypothetical protein from bacteriophage Pf1 | |
| PAKAF_04959 | 3 | 31 | -4.159506 | probable coat protein A of bacteriophage Pf1 | |
| PAKAF_04960 | 4 | 25 | -4.271850 | DUF2523 domain-containing protein | |
| PAKAF_04961 | 7 | 30 | -3.897624 | coat protein A of bacteriophage Pf1 | |
| PAKAF_04962 | 5 | 23 | -3.123752 | coat protein B of bacteriophage Pf1 | |
| PAKAF_04963 | 9 | 29 | -5.327528 | hypothetical protein of bacteriophage Pf1 | |
| PAKAF_04964 | 9 | 56 | -15.052287 | hypothetical protein of bacteriophage Pf1 | |
| PAKAF_04965 | 9 | 69 | -18.852234 | helix destabilizing protein of bacteriophage | |
| PAKAF_04966 | 6 | 79 | -20.945084 | hypothetical protein of bacteriophage Pf1 | |
| PAKAF_04967 | 5 | 82 | -21.914811 | hypothetical protein | |
| PAKAF_04968 | 5 | 46 | -13.755062 | helix-turn-helix domain-containing protein | |
| PAKAF_04969 | 3 | 39 | -12.235854 | Uncharacterized conserved protein,Protein of | |
| PAKAF_04970 | 1 | 20 | -5.575719 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04961 | cloacin | 46 | 1e-07 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| 71 | PAKAF_04986 | PAKAF_04994 | Y ![]() | N | Y | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04986 | -1 | 11 | -3.695002 | PqiB family protein | |
| PAKAF_04988 | 0 | 16 | -5.117369 | paraquat-inducible protein,Inner membrane | |
| PAKAF_04991 | 2 | 15 | -4.964253 | **protein-methionine-sulfoxide reductase | |
| PAKAF_04992 | 3 | 14 | -4.785480 | protein-methionine-sulfoxide reductase catalytic | |
| PAKAF_04993 | 2 | 14 | -4.437360 | phosphatidylserine synthase | |
| PAKAF_04994 | 1 | 14 | -3.260219 | ketol-acid reductoisomerase |
| 72 | PAKAF_05110 | PAKAF_05126 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05110 | -1 | 14 | 3.277146 | *class I SAM-dependent methyltransferase | |
| PAKAF_05111 | -2 | 13 | 3.392185 | probable amino acid permease | |
| PAKAF_05112 | -1 | 14 | 3.343372 | probable class III aminotransferase | |
| PAKAF_05113 | -1 | 15 | 3.377484 | probable transcriptional regulator | |
| PAKAF_05114 | -2 | 27 | 2.032546 | selenocysteine-specific elongation factor | |
| PAKAF_05115 | 0 | 24 | 0.448830 | L-seryl-tRNA(ser) selenium transferase | |
| PAKAF_05116 | 0 | 23 | 0.482364 | FdhE protein | |
| PAKAF_05117 | 0 | 24 | 0.159165 | nitrate-inducible formate dehydrogenase, gamma | |
| PAKAF_05118 | -1 | 22 | 1.252537 | nitrate-inducible formate dehydrogenase, beta | |
| PAKAF_05120 | -2 | 8 | 3.651247 | lipase LipC | |
| PAKAF_05121 | 0 | 9 | 3.806907 | 2,4-dienoyl-CoA reductase FadH2 | |
| PAKAF_05122 | 0 | 9 | 3.542976 | DMT family transporter | |
| PAKAF_05123 | 1 | 9 | 4.017009 | DUF1835 domain-containing protein | |
| PAKAF_05124 | 3 | 7 | 3.213211 | hypothetical protein | |
| PAKAF_05125 | 5 | 6 | 3.317657 | phospholipid carrier-dependent | |
| PAKAF_05126 | 3 | 7 | 3.335811 | probable glycosyl transferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05114 | TCRTETOQM | 57 | 4e-10 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| 73 | PAKAF_05194 | PAKAF_05219 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05194 | 2 | 10 | 1.436765 | cytochrome b/b6 domain-containing protein | |
| PAKAF_05195 | 2 | 10 | 2.555408 | hypothetical protein | |
| PAKAF_05196 | 2 | 11 | 2.536171 | two-component response regulator | |
| PAKAF_05197 | 2 | 11 | 3.150659 | probable two-component sensor | |
| PAKAF_05198 | 2 | 11 | 2.945763 | probable major facilitator superfamily (MFS) | |
| PAKAF_05199 | 0 | 11 | 3.344609 | acyl-CoA delta-9-desaturase, DesB | |
| PAKAF_05200 | 2 | 14 | 4.873796 | probable oxidoreductase | |
| PAKAF_05201 | 1 | 12 | 4.822323 | DesT | |
| PAKAF_05202 | 1 | 12 | 4.404172 | urease accessory protein UreE | |
| PAKAF_05203 | -1 | 9 | 2.115366 | urease accessory protein UreF | |
| PAKAF_05204 | 0 | 8 | 1.474247 | urease accessory protein UreG | |
| PAKAF_05205 | -1 | 8 | 1.848629 | protein hupE | |
| PAKAF_05206 | -1 | 8 | 1.755842 | probable transmembrane sensor | |
| PAKAF_05207 | 0 | 8 | 1.538102 | probable sigma-70 factor, ECF subfamily | |
| PAKAF_05208 | 0 | 9 | 1.623834 | TonB-dependent receptor | |
| PAKAF_05209 | -1 | 11 | 2.936150 | vanillate porin OpdK | |
| PAKAF_05210 | -1 | 11 | 3.424436 | probable aldehyde dehydrogenase | |
| PAKAF_05211 | -1 | 9 | 3.557439 | probable major facilitator superfamily (MFS) | |
| PAKAF_05212 | -1 | 9 | 3.367508 | benzoylformate decarboxylase | |
| PAKAF_05213 | -1 | 10 | 2.821263 | probable transcriptional regulator | |
| PAKAF_05214 | 0 | 10 | 3.374863 | probable major facilitator superfamily (MFS) | |
| PAKAF_05215 | 1 | 10 | 2.227896 | vanillate O-demethylase oxygenase subunit | |
| PAKAF_05216 | 0 | 10 | 1.515982 | vanillate O-demethylase oxidoreductase | |
| PAKAF_05217 | 1 | 12 | 0.832192 | probable transcriptional regulator | |
| PAKAF_05218 | 2 | 14 | -0.142610 | probable short-chain dehydrogenase | |
| PAKAF_05219 | 2 | 15 | -0.567113 | ornithine cyclodeaminase family protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05196 | HTHFIS | 76 | 4e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05198 | TCRTETA | 33 | 0.002 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05201 | HTHTETR | 64 | 6e-15 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05211 | TCRTETB | 46 | 1e-07 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05214 | TCRTETA | 50 | 9e-09 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05218 | DHBDHDRGNASE | 79 | 1e-19 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05219 | SECA | 30 | 0.015 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| 74 | PAKAF_05288 | PAKAF_05312 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05288 | 0 | 7 | 3.093857 | NAD(P)H quinone oxidoreductase | |
| PAKAF_05289 | 0 | 7 | 2.799769 | Arginine:Pyruvate Transaminase, AruH | |
| PAKAF_05290 | 0 | 10 | 2.934167 | 2-ketoarginine decarboxylase, AruI | |
| PAKAF_05291 | -1 | 11 | 2.435154 | acetate--CoA ligase family protein | |
| PAKAF_05292 | -1 | 13 | 2.181580 | probable acyl-CoA dehydrogenase | |
| PAKAF_05293 | -2 | 14 | 2.751527 | probable enoyl-CoA hydratase/isomerase | |
| PAKAF_05294 | -2 | 13 | 2.819994 | lysine-specific permease | |
| PAKAF_05295 | -2 | 13 | 3.182826 | probable two-component sensor | |
| PAKAF_05297 | 0 | 10 | 3.342035 | probable two-component response regulator | |
| PAKAF_05298 | 0 | 10 | 3.599503 | probable transcriptional regulator | |
| PAKAF_05299 | 1 | 10 | 3.492087 | ABC transporter substrate-binding protein | |
| PAKAF_05300 | 0 | 9 | 3.536967 | probable oxidoreductase | |
| PAKAF_05301 | -1 | 10 | 3.020829 | probable transcriptional regulator | |
| PAKAF_05302 | 0 | 9 | 3.448913 | 3-deoxy-D-manno-octulosonic-acid (KDO) | |
| PAKAF_05303 | -1 | 8 | 1.942997 | probable transcriptional regulator | |
| PAKAF_05304 | -1 | 9 | 1.745611 | SMR multidrug efflux transporter | |
| PAKAF_05305 | 0 | 12 | -1.408433 | FAD-dependent oxidoreductase | |
| PAKAF_05306 | -1 | 12 | -1.545567 | aldo/keto reductase | |
| PAKAF_05307 | -2 | 11 | -2.198664 | hypothetical protein | |
| PAKAF_05308 | -2 | 13 | -2.894377 | probable acyl-CoA dehydrogenase | |
| PAKAF_05309 | -2 | 15 | -3.207490 | probable acyl-CoA dehydrogenase | |
| PAKAF_05310 | -2 | 18 | -4.678215 | asparagine synthetase,Asparagine synthetase | |
| PAKAF_05311 | -2 | 10 | -3.015642 | LPS biosynthesis protein RfaE | |
| PAKAF_05312 | -1 | 13 | -3.262101 | transport protein MsbA |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05295 | HTHFIS | 53 | 5e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05297 | HTHFIS | 92 | 1e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05298 | HTHTETR | 75 | 1e-18 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05311 | LPSBIOSNTHSS | 28 | 0.044 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05312 | ACRIFLAVINRP | 31 | 0.013 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 75 | PAKAF_05371 | PAKAF_05376 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05371 | 3 | 12 | -0.980460 | DUF971 domain-containing protein | |
| PAKAF_05372 | 3 | 11 | -1.622580 | poly(3-hydroxyalkanoic acid) synthase 1 | |
| PAKAF_05373 | 3 | 14 | -1.198138 | poly(3-hydroxyalkanoic acid) depolymerase | |
| PAKAF_05374 | 4 | 14 | -1.639624 | poly(3-hydroxyalkanoic acid) synthase 2 | |
| PAKAF_05375 | 7 | 17 | -1.158591 | probable transcriptional regulator | |
| PAKAF_05376 | 6 | 16 | -0.729395 | polyhydroxyalkanoate synthesis protein PhaF |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05375 | HTHTETR | 60 | 2e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05376 | IGASERPTASE | 47 | 7e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| 76 | PAKAF_05397 | PAKAF_05413 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05397 | 3 | 13 | -0.907758 | NUDIX hydrolase | |
| PAKAF_05398 | 6 | 24 | -3.882087 | DguC | |
| PAKAF_05399 | 9 | 37 | -6.165878 | DguB | |
| PAKAF_05400 | 7 | 30 | -5.125680 | DguA | |
| PAKAF_05401 | 5 | 27 | -5.018717 | DguR | |
| PAKAF_05402 | 5 | 27 | -5.325931 | Tli5b | |
| PAKAF_05403 | 3 | 19 | -3.181809 | Tli5b | |
| PAKAF_05404 | 0 | 11 | -0.686598 | Tli5b | |
| PAKAF_05405 | -2 | 9 | 0.735265 | PldB | |
| PAKAF_05406 | -1 | 6 | 1.320897 | VgrG5 | |
| PAKAF_05407 | -1 | 10 | 1.591457 | N-formylglutamate amidohydrolase | |
| PAKAF_05408 | 2 | 11 | 1.212324 | imidazolone-5-propionate hydrolase HutI | |
| PAKAF_05409 | 2 | 12 | 1.085164 | probable histidine/phenylalanine ammonia-lyase | |
| PAKAF_05410 | 3 | 11 | 0.349670 | probable ATP-binding component of ABC | |
| PAKAF_05411 | 2 | 11 | 0.779111 | probable permease of ABC transporter | |
| PAKAF_05412 | 0 | 11 | 1.064559 | probable binding protein component of ABC | |
| PAKAF_05413 | 2 | 10 | 1.323369 | probable amino acid permease |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05408 | UREASE | 36 | 2e-04 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 77 | PAKAF_05572 | PAKAF_05589 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05572 | 3 | 16 | -0.566167 | c-type cytochrome | |
| PAKAF_05573 | 4 | 19 | -1.330452 | hypothetical protein | |
| PAKAF_05574 | 5 | 20 | -1.835779 | TerC family protein | |
| PAKAF_05575 | 7 | 22 | -1.485699 | mechanosensitive ion channel family protein | |
| PAKAF_05576 | 7 | 20 | -0.808404 | probable ATP-binding component of ABC | |
| PAKAF_05578 | 10 | 23 | -0.540453 | alginate regulatory protein AlgP | |
| PAKAF_05579 | 4 | 18 | -0.470743 | probable peptidyl-prolyl cis-trans isomerase, | |
| PAKAF_05580 | 4 | 14 | 0.169377 | Alginate regulatory protein AlgQ | |
| PAKAF_05581 | 3 | 14 | 0.452285 | disulfide bond formation protein | |
| PAKAF_05582 | 3 | 15 | 0.038680 | heme biosynthesis protein HemY | |
| PAKAF_05583 | 0 | 9 | 0.045042 | heme biosynthesis operon protein HemX | |
| PAKAF_05584 | -1 | 13 | -2.294793 | uroporphyrinogen-III synthetase | |
| PAKAF_05585 | 0 | 19 | -3.312995 | porphobilinogen deaminase | |
| PAKAF_05586 | 0 | 16 | -2.710415 | alginate biosynthesis regulatory protein AlgR | |
| PAKAF_05587 | 0 | 15 | -2.767942 | alginate biosynthesis protein FimS | |
| PAKAF_05588 | -1 | 13 | -3.010100 | argininosuccinate lyase | |
| PAKAF_05589 | 0 | 16 | -3.648053 | PA5264 ortholog, hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05576 | GPOSANCHOR | 31 | 0.012 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05578 | IGASERPTASE | 61 | 2e-12 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05579 | INFPOTNTIATR | 96 | 2e-26 | Macrophage infectivity potentiator signature. | |
>INFPOTNTIATR#Macrophage infectivity potentiator signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05586 | HTHFIS | 79 | 4e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05587 | PF06580 | 182 | 1e-56 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| 78 | PAKAF_05673 | PAKAF_05679 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05673 | 2 | 13 | -1.025990 | hypothetical protein | |
| PAKAF_05674 | -2 | 12 | 1.966655 | probable DNA-binding protein | |
| PAKAF_05675 | -2 | 12 | 3.376427 | rubredoxin reductase | |
| PAKAF_05676 | -2 | 11 | 3.268695 | Rubredoxin 2 | |
| PAKAF_05677 | -2 | 11 | 3.495725 | Rubredoxin 1 | |
| PAKAF_05678 | -2 | 10 | 3.945856 | heme-binding protein | |
| PAKAF_05679 | -2 | 8 | 3.310507 | glycolate oxidase subunit GlcF |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05674 | DNABINDINGHU | 111 | 4e-36 | Prokaryotic integration host factor signature. | |
>DNABINDINGHU#Prokaryotic integration host factor signature. | |||||
| 79 | PAKAF_05707 | PAKAF_05733 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05707 | 2 | 12 | 2.598973 | L-serine dehydratase | |
| PAKAF_05708 | 4 | 13 | 2.754947 | GbdR | |
| PAKAF_05709 | 3 | 12 | 3.653628 | HTH-type transcriptional regulator CysL | |
| PAKAF_05710 | 3 | 11 | 3.417576 | probable transcriptional regulator | |
| PAKAF_05711 | 2 | 11 | 2.828978 | YeiH family protein | |
| PAKAF_05712 | 2 | 13 | 2.745167 | HocS | |
| PAKAF_05713 | 0 | 12 | 2.438641 | CdhB, Carnitine dehydrogenase-related protein B | |
| PAKAF_05714 | 0 | 11 | 2.969804 | CdhA, Carnitine dehydrogenase | |
| PAKAF_05715 | -1 | 11 | 2.143508 | CdhC, Carnitine dehydrogenase-related protein C | |
| PAKAF_05716 | -1 | 9 | 2.284120 | CaiX | |
| PAKAF_05717 | 0 | 11 | 2.347691 | CdhR, transcriptional regulator | |
| PAKAF_05718 | 2 | 11 | 2.232926 | probable peptidic bond hydrolase | |
| PAKAF_05719 | 2 | 11 | 0.680580 | DUF1028 domain-containing protein | |
| PAKAF_05720 | 2 | 12 | -0.227800 | RidA family protein | |
| PAKAF_05721 | 2 | 13 | -0.245169 | conserved hypothetical protein | |
| PAKAF_05722 | 0 | 14 | 0.039616 | cardiolipin synthase | |
| PAKAF_05723 | 1 | 16 | 0.702455 | DUF1348 family protein | |
| PAKAF_05724 | 0 | 15 | 1.110675 | peptidase M19 | |
| PAKAF_05725 | -2 | 13 | 1.335148 | hypothetical protein | |
| PAKAF_05726 | -2 | 14 | 1.386532 | DgcA, Dimethylglycine catabolism | |
| PAKAF_05727 | 0 | 14 | 1.967976 | DgcB, Dimethylglycine catabolism | |
| PAKAF_05728 | 1 | 18 | 1.449608 | probable electron transfer flavoprotein alpha | |
| PAKAF_05729 | 5 | 21 | -1.145497 | electron transfer flavoprotein subunit beta/FixA | |
| PAKAF_05730 | 5 | 24 | -2.680061 | hypothetical protein | |
| PAKAF_05731 | 5 | 25 | -1.106926 | probable transcriptional regulator | |
| PAKAF_05732 | 3 | 21 | -0.178853 | hypothetical protein | |
| PAKAF_05733 | 3 | 16 | 0.306483 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05727 | TCRTETA | 32 | 0.008 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 80 | PAKAF_05792 | PAKAF_05800 | Y ![]() | N | N | Genomic Island |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05792 | 2 | 12 | 2.158717 | DUF2388 domain-containing protein | |
| PAKAF_05793 | 2 | 12 | 2.424255 | DUF2388 domain-containing protein | |
| PAKAF_05794 | 2 | 10 | 1.989890 | DUF2388 domain-containing protein | |
| PAKAF_05795 | 2 | 11 | 1.247153 | DUF4105 domain-containing protein | |
| PAKAF_05796 | 3 | 10 | 1.156573 | GFA family protein | |
| PAKAF_05797 | 3 | 10 | 1.196874 | AEC family transporter | |
| PAKAF_05798 | 3 | 10 | 0.536677 | DUF2388 domain-containing protein | |
| PAKAF_05799 | 3 | 10 | 0.367632 | probable citrate transporter | |
| PAKAF_05800 | 2 | 8 | 0.597987 | TerC family protein |
| 81 | PAKAF_00159 | PAKAF_00169 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00159 | 2 | 10 | 0.249392 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_00160 | 1 | 9 | -0.733195 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_00161 | 1 | 11 | -0.996736 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_00162 | -1 | 10 | 0.911964 | probable transcriptional regulator | |
| PAKAF_00163 | 1 | 11 | -0.199758 | hypothetical protein | |
| PAKAF_00164 | 0 | 10 | 0.579585 | hypothetical protein | |
| PAKAF_00165 | -1 | 12 | 1.019713 | histidine porin OpdC | |
| PAKAF_00166 | -1 | 14 | 2.224539 | probable transcriptional regulator | |
| PAKAF_00167 | -1 | 13 | 1.992856 | probable gamma-glutamyltranspeptidase | |
| PAKAF_00168 | -1 | 14 | 0.975911 | hypothetical protein | |
| PAKAF_05910 | 1 | 13 | 1.857535 | probable transporter | |
| PAKAF_00169 | -1 | 16 | 2.077844 | probable transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00159 | RTXTOXIND | 49 | 1e-08 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00160 | RTXTOXIND | 40 | 1e-05 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00161 | ACRIFLAVINRP | 490 | e-159 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00166 | PHAGEIV | 30 | 0.009 | Gene IV protein signature. | |
>PHAGEIV#Gene IV protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00167 | PF09025 | 30 | 0.016 | YopR Core | |
>PF09025#YopR Core | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00168 | CHANNELTSX | 46 | 7e-08 | Nucleoside-specific channel-forming protein Tsx signa... | |
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00169 | HTHTETR | 66 | 2e-15 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 82 | PAKAF_00369 | PAKAF_00376 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00369 | 0 | 12 | 1.143708 | probable transcriptional regulator | |
| PAKAF_00371 | 1 | 14 | 1.609401 | hydrolase | |
| PAKAF_00372 | 1 | 14 | 0.946179 | hypothetical protein | |
| PAKAF_00373 | 1 | 11 | 0.577516 | 16S rRNA (guanine(966)-N(2))- methyltransferase | |
| PAKAF_00374 | 1 | 11 | -0.169161 | insulinase family protein | |
| PAKAF_00375 | 1 | 10 | 0.183384 | probable zinc protease | |
| PAKAF_00376 | 2 | 9 | 0.441084 | signal recognition particle receptor FtsY |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00369 | HTHTETR | 59 | 5e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00371 | PF06057 | 29 | 0.024 | Type IV secretory pathway VirJ component | |
>PF06057#Type IV secretory pathway VirJ component | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00374 | PHPHTRNFRASE | 34 | 0.002 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00376 | PF03544 | 45 | 2e-07 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| 83 | PAKAF_00406 | PAKAF_00418 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00406 | -2 | 12 | -0.001064 | aspartate carbamoyltransferase | |
| PAKAF_00407 | 0 | 14 | -0.700210 | transcriptional regulator PyrR | |
| PAKAF_00408 | 0 | 14 | -1.417720 | Holliday junction resolvase RuvX | |
| PAKAF_00409 | 0 | 12 | -1.810944 | YqgE/AlgH family protein | |
| PAKAF_00410 | 2 | 12 | -2.162958 | TonB3 | |
| PAKAF_00411 | 2 | 12 | -2.404058 | glutathione synthetase | |
| PAKAF_00412 | 1 | 9 | 0.717746 | twitching motility protein PilG | |
| PAKAF_00413 | 1 | 9 | 1.167160 | twitching motility protein PilH | |
| PAKAF_00414 | 1 | 9 | 1.479464 | twitching motility protein PilI | |
| PAKAF_00415 | 1 | 8 | 1.788615 | twitching motility protein PilJ | |
| PAKAF_00416 | 1 | 8 | 2.516030 | methyltransferase PilK | |
| PAKAF_00417 | 1 | 7 | 2.981021 | component of chemotactic signal transduction | |
| PAKAF_00418 | 2 | 7 | 3.802520 | probable methylesterase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00406 | TYPE3IMPPROT | 29 | 0.032 | Type III secretion system inner membrane P protein ... | |
>TYPE3IMPPROT#Type III secretion system inner membrane P protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00410 | PF03544 | 60 | 1e-12 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00412 | HTHFIS | 73 | 3e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00413 | HTHFIS | 80 | 8e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00417 | HTHFIS | 68 | 2e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00418 | HTHFIS | 30 | 0.014 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 84 | PAKAF_00425 | PAKAF_00432 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00425 | 0 | 13 | -1.989008 | flavin monoamine oxidase family protein | |
| PAKAF_00426 | 0 | 13 | -1.628526 | cytochrome b | |
| PAKAF_00427 | 0 | 12 | -1.006458 | PasP | |
| PAKAF_00428 | 0 | 10 | -1.113302 | multidrug resistance operon repressor MexR | |
| PAKAF_00429 | 0 | 9 | -0.966780 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_00430 | -1 | 9 | -0.940218 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_00431 | -1 | 10 | -0.637264 | Major intrinsic multiple antibiotic resistance | |
| PAKAF_00432 | -1 | 10 | -0.858941 | probable ATP-dependent RNA helicase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00425 | FLGFLGJ | 30 | 0.016 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00429 | RTXTOXIND | 47 | 8e-08 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00430 | ACRIFLAVINRP | 1352 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00432 | SECA | 38 | 1e-04 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
| 85 | PAKAF_00605 | PAKAF_00611 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00605 | 0 | 9 | -0.472595 | DUF3530 family protein | |
| PAKAF_00606 | -2 | 8 | -1.078078 | probable two-component sensor | |
| PAKAF_00607 | -2 | 10 | -2.041188 | probable two-component response regulator | |
| PAKAF_00608 | -2 | 10 | -2.211652 | probable binding protein component of ABC | |
| PAKAF_00609 | -2 | 11 | -2.089417 | probable ATP-binding component of ABC | |
| PAKAF_00610 | -1 | 12 | -2.345600 | probable binding protein component of ABC | |
| PAKAF_00611 | 1 | 12 | -2.113112 | probable permease of ABC transporter |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00605 | CHANLCOLICIN | 29 | 0.030 | Channel forming colicin signature. | |
>CHANLCOLICIN#Channel forming colicin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00607 | HTHFIS | 56 | 1e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00609 | PF05272 | 34 | 0.001 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00611 | PF07675 | 29 | 0.037 | Cleaved Adhesin | |
>PF07675#Cleaved Adhesin | |||||
| 86 | PAKAF_00746 | PAKAF_00753 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00746 | 0 | 10 | 1.264348 | phenazine biosynthesis protein PhzD | |
| PAKAF_00747 | -1 | 9 | 0.863348 | phenazine biosynthesis protein PhzC | |
| PAKAF_00748 | -1 | 7 | 0.344214 | probable phenazine biosynthesis protein | |
| PAKAF_00749 | -2 | 8 | 1.360203 | probable phenazine biosynthesis protein | |
| PAKAF_00750 | -1 | 9 | 1.858945 | probable phenazine-specific methyltransferase | |
| PAKAF_00751 | -1 | 12 | 2.502147 | probable outer membrane protein precursor | |
| PAKAF_00752 | -1 | 11 | 2.342783 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_00753 | -2 | 9 | 3.388992 | probable Resistance-Nodulation-Cell Division |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00746 | ISCHRISMTASE | 351 | e-125 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00751 | RTXTOXIND | 29 | 0.033 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00752 | ACRIFLAVINRP | 804 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00753 | RTXTOXIND | 46 | 1e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 87 | PAKAF_00795 | PAKAF_00802 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00795 | 0 | 12 | 4.400236 | probable acetyltransferase | |
| PAKAF_00796 | 0 | 11 | 5.455942 | probable transcriptional regulator | |
| PAKAF_00797 | 0 | 10 | 5.283625 | hypothetical protein | |
| PAKAF_00798 | 1 | 9 | 5.289847 | hypothetical protein | |
| PAKAF_00799 | 3 | 11 | 5.413996 | probable short-chain dehydrogenase | |
| PAKAF_00800 | -2 | 9 | 3.704405 | ferric enterobactin transport protein FepG | |
| PAKAF_00801 | -2 | 11 | 2.791679 | ferric enterobactin transport protein FepD | |
| PAKAF_00802 | -1 | 10 | 1.929335 | ferrienterobactin-binding periplasmic protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00795 | SACTRNSFRASE | 41 | 5e-07 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00799 | DHBDHDRGNASE | 119 | 6e-35 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00801 | PF04335 | 30 | 0.010 | VirB8 type IV secretion protein | |
>PF04335#VirB8 type IV secretion protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00802 | FERRIBNDNGPP | 37 | 6e-05 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| 88 | PAKAF_00813 | PAKAF_00819 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00813 | 0 | 9 | 2.603567 | probable short-chain dehydrogenase | |
| PAKAF_00814 | 1 | 11 | 2.331568 | transcriptional regulator AcoR | |
| PAKAF_00815 | 0 | 13 | 1.563130 | hypothetical protein | |
| PAKAF_00816 | -1 | 13 | 1.723264 | probable transcriptional regulator | |
| PAKAF_00817 | -1 | 13 | 1.437142 | probable outer membrane protein precursor | |
| PAKAF_00818 | -1 | 11 | 0.875055 | probable toxin transporter | |
| PAKAF_00819 | -1 | 10 | 0.576355 | probable secretion protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00813 | DHBDHDRGNASE | 127 | 2e-37 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00814 | HTHFIS | 339 | e-112 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00817 | GPOSANCHOR | 31 | 0.009 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00819 | RTXTOXIND | 156 | 3e-45 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 89 | PAKAF_00879 | PAKAF_00885 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_00879 | 0 | 20 | 0.077940 | usher CupB3 | |
| PAKAF_00880 | 0 | 13 | 0.509862 | chaperone CupB4 | |
| PAKAF_00881 | 0 | 13 | 0.062595 | adhesive protein CupB5 | |
| PAKAF_00882 | -1 | 13 | -0.229196 | fimbrial subunit CupB6 | |
| PAKAF_00883 | -1 | 13 | 0.175039 | probable response regulator | |
| PAKAF_00884 | -2 | 12 | 1.718087 | probable dehydrogenase | |
| PAKAF_00885 | -3 | 10 | 1.791006 | probable nonribosomal peptide synthetase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00879 | PF00577 | 747 | 0.0 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00881 | PF05860 | 79 | 8e-20 | haemagglutination activity domain. | |
>PF05860#haemagglutination activity domain. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00883 | HTHFIS | 57 | 1e-11 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00884 | DHBDHDRGNASE | 64 | 2e-14 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_00885 | NUCEPIMERASE | 46 | 4e-07 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 90 | PAKAF_01012 | PAKAF_01019 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01012 | -1 | 10 | 0.890680 | cysteine hydrolase | |
| PAKAF_01013 | -1 | 12 | -0.528706 | DUF2076 domain-containing protein | |
| PAKAF_01014 | 0 | 12 | -1.399649 | conserved hypothetical protein | |
| PAKAF_01015 | 0 | 12 | -1.342404 | probable ATP-dependent RNA helicase | |
| PAKAF_01016 | 2 | 13 | -1.529233 | TIGR03862 family flavoprotein | |
| PAKAF_01017 | 1 | 15 | -1.153000 | two-component response regulator RocA1 | |
| PAKAF_01018 | 1 | 14 | -0.740187 | RocR | |
| PAKAF_01019 | 1 | 13 | 0.187081 | probable two-component sensor |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01012 | ISCHRISMTASE | 46 | 2e-08 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01015 | TONBPROTEIN | 32 | 0.003 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01017 | HTHFIS | 73 | 4e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01018 | HTHFIS | 53 | 1e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01019 | HTHFIS | 64 | 2e-12 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 91 | PAKAF_01085 | PAKAF_01092 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01085 | 1 | 14 | 2.414433 | probable short-chain dehydrogenase | |
| PAKAF_01086 | 0 | 14 | 0.981231 | class I SAM-dependent methyltransferase | |
| PAKAF_01087 | 0 | 14 | 0.672305 | hypothetical protein | |
| PAKAF_01088 | 0 | 16 | 0.350038 | conserved hypothetical protein | |
| PAKAF_01089 | 0 | 16 | -0.020759 | two-component response regulator NarL | |
| PAKAF_01090 | 0 | 16 | 0.155200 | two-component sensor NarX | |
| PAKAF_01091 | 0 | 16 | -0.203039 | nitrite extrusion protein 1 | |
| PAKAF_01092 | 0 | 15 | 0.228598 | nitrite extrusion protein 2 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01085 | DHBDHDRGNASE | 87 | 3e-22 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01089 | HTHFIS | 80 | 1e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01090 | PF06580 | 43 | 2e-06 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01091 | TCRTETA | 39 | 3e-05 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01092 | TCRTETA | 30 | 0.019 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| 92 | PAKAF_01251 | PAKAF_01260 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01251 | -1 | 8 | -0.863460 | elastase LasB | |
| PAKAF_01252 | 0 | 13 | 0.910596 | probable FMN oxidoreductase | |
| PAKAF_01253 | 1 | 18 | 0.301839 | hypothetical protein | |
| PAKAF_01254 | -3 | 13 | -0.339520 | NalC | |
| PAKAF_01255 | -3 | 12 | -0.062331 | hypothetical protein | |
| PAKAF_05917 | -2 | 11 | -0.402543 | antirepressor for MexR, ArmR | |
| PAKAF_01256 | -2 | 10 | -0.270677 | probable major facilitator superfamily (MFS) | |
| PAKAF_01257 | -1 | 12 | -0.642753 | probable peptidyl-prolyl cis-trans isomerase, | |
| PAKAF_01258 | -1 | 12 | -0.225552 | WG repeat-containing protein | |
| PAKAF_01259 | -1 | 11 | 0.670982 | hypothetical protein | |
| PAKAF_01260 | -2 | 8 | 0.300404 | probable two-component response regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01251 | THERMOLYSIN | 399 | e-136 | Thermolysin metalloprotease (M4) family signature. | |
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01254 | HTHTETR | 63 | 2e-14 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01256 | TCRTETB | 60 | 8e-12 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01257 | INFPOTNTIATR | 80 | 5e-22 | Macrophage infectivity potentiator signature. | |
>INFPOTNTIATR#Macrophage infectivity potentiator signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01260 | HTHFIS | 61 | 3e-13 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 93 | PAKAF_01265 | PAKAF_01275 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01265 | -1 | 8 | 0.952957 | probable major facilitator superfamily (MFS) | |
| PAKAF_01266 | 0 | 10 | 1.219088 | probable chemotaxis transducer | |
| PAKAF_01267 | 1 | 12 | 1.667961 | purine-binding chemotaxis protein CheW | |
| PAKAF_01268 | 0 | 20 | 0.846682 | probable protein methyltransferase | |
| PAKAF_01269 | 0 | 15 | -0.147601 | purine-binding chemotaxis protein CheW | |
| PAKAF_01270 | 0 | 15 | -0.290765 | probable chemotaxis sensor/effector fusion | |
| PAKAF_01271 | 1 | 18 | -1.726461 | probable methylesterase | |
| PAKAF_01272 | 2 | 16 | -1.919711 | probable two-component response regulator | |
| PAKAF_01273 | 2 | 16 | -2.155520 | peptide chain release factor I | |
| PAKAF_01274 | 0 | 13 | -1.327852 | lysyl-tRNA synthetase | |
| PAKAF_01275 | -1 | 11 | -0.951639 | probable transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01265 | TCRTETA | 35 | 6e-04 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01270 | HTHFIS | 74 | 7e-16 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01271 | HTHFIS | 48 | 2e-08 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01272 | HTHFIS | 68 | 1e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01275 | HTHTETR | 36 | 4e-05 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 94 | PAKAF_01291 | PAKAF_01298 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01291 | 1 | 11 | 2.618532 | DUF72 domain-containing protein | |
| PAKAF_01292 | 0 | 9 | 3.185629 | isocitrate lyase/phosphoenolpyruvate mutase | |
| PAKAF_01293 | -2 | 12 | 1.590581 | extensin family protein | |
| PAKAF_01294 | -1 | 12 | 1.449064 | ribosomal RNA small subunit methyltransferase J | |
| PAKAF_01295 | -2 | 11 | 0.975565 | cytochrome P450 | |
| PAKAF_01296 | -1 | 12 | -0.135639 | probable transcriptional regulator | |
| PAKAF_01297 | -2 | 11 | 0.190627 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_01298 | -2 | 13 | -0.529897 | probable Resistance-Nodulation-Cell Division |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01291 | OUTRMMBRANEA | 28 | 0.028 | Outer membrane protein A signature. | |
>OUTRMMBRANEA#Outer membrane protein A signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01296 | HTHTETR | 70 | 5e-17 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01297 | RTXTOXIND | 56 | 1e-10 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01298 | ACRIFLAVINRP | 483 | e-156 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 95 | PAKAF_01507 | PAKAF_01515 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01507 | 1 | 11 | 1.755279 | putative MFS transporter,Putative | |
| PAKAF_01508 | 0 | 11 | 1.622459 | putative ATP-dependent RNA | |
| PAKAF_01509 | 0 | 12 | 2.120246 | transmembrane protein,enterobactin exporter | |
| PAKAF_01510 | -1 | 10 | 1.773524 | phospholipase | |
| PAKAF_01511 | -1 | 10 | 1.482719 | YheU family protein | |
| PAKAF_01512 | -1 | 10 | 2.015183 | probable sensor/response regulator hybrid | |
| PAKAF_01513 | -2 | 11 | 3.200287 | osmoprotectant NAGGN system M42 family | |
| PAKAF_01514 | 0 | 11 | 2.707385 | probable acetyltransferase | |
| PAKAF_01515 | 0 | 10 | 2.283003 | probable glutamine amidotransferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01507 | TCRTETA | 58 | 3e-11 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01509 | TCRTETA | 43 | 3e-06 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01510 | PRPHPHLPASEC | 38 | 4e-05 | Prokaryotic zinc-dependent phospholipase C signature. | |
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01512 | HTHFIS | 70 | 2e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01514 | SACTRNSFRASE | 35 | 3e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01515 | ANTHRAXTOXNA | 33 | 0.003 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
| 96 | PAKAF_01568 | PAKAF_01575 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01568 | 1 | 14 | 3.497981 | heme acquisition protein HasAp | |
| PAKAF_01569 | 1 | 14 | 3.098247 | transport protein HasD | |
| PAKAF_01570 | 2 | 14 | 1.637402 | metalloprotease secretion protein | |
| PAKAF_01571 | 2 | 15 | 0.992899 | probable outer membrane protein precursor | |
| PAKAF_01572 | 1 | 15 | 0.333604 | phosphate-starvation-inducible protein PsiE | |
| PAKAF_01573 | 1 | 16 | 0.051477 | biotin/lipoyl-binding protein | |
| PAKAF_01574 | 2 | 16 | 0.149579 | ABC transporter permease | |
| PAKAF_01575 | 3 | 17 | 1.068475 | putative ABC-type multidrug transport system, |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01568 | PF06438 | 276 | 1e-97 | Heme acquisition protein HasAp | |
>PF06438#Heme acquisition protein HasAp | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01570 | RTXTOXIND | 417 | e-145 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01571 | RTXTOXIND | 32 | 0.007 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01573 | RTXTOXIND | 56 | 6e-11 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01575 | ABC2TRNSPORT | 28 | 0.039 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| 97 | PAKAF_01779 | PAKAF_01783 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01779 | 2 | 16 | 0.690112 | probable two-component sensor | |
| PAKAF_01780 | 1 | 13 | 0.282899 | hypothetical protein | |
| PAKAF_01781 | 0 | 14 | 0.247557 | two-component response regulator CpxR | |
| PAKAF_01782 | 1 | 14 | -0.525603 | hypothetical protein | |
| PAKAF_01783 | 3 | 11 | 0.057326 | YciI family protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01779 | PF06580 | 29 | 0.026 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01781 | HTHFIS | 103 | 9e-28 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01782 | IGASERPTASE | 28 | 0.010 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01783 | adhesinmafb | 30 | 9e-04 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| 98 | PAKAF_01835 | PAKAF_01843 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01835 | 0 | 22 | -4.206802 | NAD dependent epimerase/dehydratase family-like | |
| PAKAF_01836 | -1 | 16 | -3.464148 | putative group 4 glycosyl | |
| PAKAF_01837 | 0 | 8 | -2.378537 | nucleotide sugar epimerase/dehydratase WbpM | |
| PAKAF_01838 | -1 | 8 | -1.586330 | ComEA family DNA-binding protein | |
| PAKAF_01840 | -1 | 9 | -1.633009 | *probable amino acid aminotransferase | |
| PAKAF_01841 | -1 | 10 | -1.479354 | excinuclease ABC subunit B | |
| PAKAF_01842 | 0 | 9 | -0.687250 | probable major facilitator superfamily (MFS) | |
| PAKAF_01843 | -1 | 12 | -0.052014 | probable secretion protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01835 | NUCEPIMERASE | 66 | 3e-14 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01837 | NUCEPIMERASE | 57 | 8e-11 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01842 | TCRTETB | 109 | 1e-27 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01843 | RTXTOXIND | 183 | 8e-56 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 99 | PAKAF_01873 | PAKAF_01899 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01873 | 1 | 9 | -0.268775 | SPOR domain-containing protein | |
| PAKAF_01874 | 1 | 8 | -0.761607 | colicin V production family protein | |
| PAKAF_01875 | 2 | 8 | -0.228228 | amidophosphoribosyltransferase | |
| PAKAF_01876 | 0 | 6 | 0.762395 | o-succinylhomoserine sulfhydrylase | |
| PAKAF_01877 | 0 | 7 | 0.327879 | probable short-chain dehydrogenase | |
| PAKAF_01878 | -1 | 8 | 0.429721 | general secretion pathway protein D | |
| PAKAF_01879 | 1 | 11 | 1.434992 | secretion protein XcpP | |
| PAKAF_01880 | 1 | 14 | 1.918256 | general secretion pathway protein E | |
| PAKAF_01881 | 0 | 15 | 1.340459 | general secretion pathway protein F | |
| PAKAF_01882 | 2 | 15 | 2.041600 | general secretion pathway protein G | |
| PAKAF_01883 | 4 | 16 | 2.825119 | General secretion pathway outer membrane protein | |
| PAKAF_01884 | 3 | 12 | 2.730901 | general secretion pathway protein I | |
| PAKAF_01885 | 2 | 11 | 2.666996 | general secretion pathway protein J | |
| PAKAF_01886 | -1 | 10 | 2.111778 | general secretion pathway protein K | |
| PAKAF_01887 | 0 | 9 | 2.456004 | general secretion pathway protein L | |
| PAKAF_01888 | -2 | 9 | 2.330639 | general secretion pathway protein M | |
| PAKAF_01892 | -2 | 9 | 2.452968 | ***probable transcriptional regulator | |
| PAKAF_01893 | -1 | 9 | 1.936239 | carbon-nitrogen hydrolase family protein | |
| PAKAF_01894 | -1 | 8 | 2.022271 | 2,4-dienoyl-CoA reductase FadH1 | |
| PAKAF_01895 | 0 | 7 | 2.197078 | chromosome partitioning protein ParA | |
| PAKAF_01896 | 1 | 8 | 1.739448 | PA3090 ortholog, hypothetical protein | |
| PAKAF_01897 | 0 | 8 | 0.502693 | DUF1853 family protein | |
| PAKAF_01898 | -1 | 10 | -0.796871 | NAD(+) kinase | |
| PAKAF_01899 | -1 | 11 | -1.075856 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01873 | PERTACTIN | 30 | 0.006 | Pertactin signature. | |
>PERTACTIN#Pertactin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01877 | DHBDHDRGNASE | 90 | 2e-24 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01878 | BCTERIALGSPD | 594 | 0.0 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01879 | BCTERIALGSPC | 49 | 3e-09 | Bacterial general secretion pathway protein C signa... | |
>BCTERIALGSPC#Bacterial general secretion pathway protein C | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01881 | BCTERIALGSPF | 501 | e-180 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01882 | BCTERIALGSPG | 192 | 9e-67 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01883 | BCTERIALGSPH | 143 | 3e-46 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01884 | BCTERIALGSPG | 35 | 2e-05 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01885 | PilS_PF08805 | 36 | 7e-05 | PilS N terminal | |
>PilS_PF08805#PilS N terminal | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01888 | PYOCINKILLER | 28 | 0.027 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01895 | RTXTOXIND | 50 | 1e-08 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01897 | FLGFLIJ | 29 | 0.019 | Flagellar FliJ protein signature. | |
>FLGFLIJ#Flagellar FliJ protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01898 | PF06057 | 29 | 0.028 | Type IV secretory pathway VirJ component | |
>PF06057#Type IV secretory pathway VirJ component | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01899 | ANTHRAXTOXNA | 31 | 0.008 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
| 100 | PAKAF_01907 | PAKAF_01913 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_01907 | 1 | 11 | 1.111753 | putative export protein | |
| PAKAF_01908 | 2 | 14 | 2.934152 | CprS | |
| PAKAF_01909 | 2 | 13 | 3.675552 | CprR | |
| PAKAF_01911 | 3 | 12 | 3.808606 | hypothetical protein | |
| PAKAF_01912 | 2 | 12 | 3.327396 | protein BatD | |
| PAKAF_01913 | 2 | 13 | 2.681137 | VWA domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01907 | ACRIFLAVINRP | 71 | 1e-14 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01908 | PF07675 | 32 | 0.005 | Cleaved Adhesin | |
>PF07675#Cleaved Adhesin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01909 | HTHFIS | 84 | 5e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_01913 | TYPE4SSCAGX | 37 | 2e-04 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
| 101 | PAKAF_02074 | PAKAF_02079 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02074 | 0 | 11 | 2.731318 | probable short-chain dehydrogenase | |
| PAKAF_02075 | 1 | 12 | 3.854250 | probable transcriptional regulator | |
| PAKAF_02076 | 1 | 14 | 2.890364 | LysE family translocator | |
| PAKAF_02077 | 0 | 14 | 2.532122 | MBL fold metallo-hydrolase | |
| PAKAF_02078 | 0 | 14 | 3.315390 | probable permease of ABC transporter | |
| PAKAF_02079 | -2 | 15 | 3.196206 | ABC transporter substrate-binding protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02074 | DHBDHDRGNASE | 69 | 4e-16 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02075 | PF05272 | 28 | 0.034 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02077 | PF05932 | 27 | 0.049 | Tir chaperone protein (CesT) | |
>PF05932#Tir chaperone protein (CesT) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02079 | FERRIBNDNGPP | 40 | 8e-06 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
| 102 | PAKAF_02094 | PAKAF_02113 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02094 | 0 | 12 | 1.591457 | probable outer membrane protein precursor | |
| PAKAF_02095 | 2 | 12 | 1.461070 | probable transcriptional regulator | |
| PAKAF_02096 | 1 | 10 | 1.090725 | SbrI | |
| PAKAF_02097 | 0 | 9 | 1.130127 | SbrR | |
| PAKAF_02098 | 1 | 9 | 2.374310 | probable sigma-70 factor, ECF subfamily | |
| PAKAF_02099 | 2 | 10 | 2.834679 | anti-sigma factor SbrR | |
| PAKAF_02100 | -1 | 13 | 1.572918 | hypothetical protein | |
| PAKAF_02101 | -2 | 15 | 1.696546 | putative very-long chain acyl-CoA synthetase | |
| PAKAF_02102 | -1 | 16 | 2.157952 | putative short chain dehydrogenase involved in | |
| PAKAF_02103 | -1 | 14 | 2.138028 | geranyl-CoA carboxylase, alpha-subunit | |
| PAKAF_02104 | -1 | 13 | 1.404239 | putative isohexenylglutaconyl-CoA hydratase | |
| PAKAF_02105 | -1 | 13 | 0.767033 | putative citronellyl-CoA dehydrogenase involved | |
| PAKAF_02106 | -1 | 11 | 1.268114 | geranyl-CoA carboxylase, beta-subunit | |
| PAKAF_02107 | 0 | 10 | 1.214908 | putative dehydrogenase involved in catabolism of | |
| PAKAF_02108 | 2 | 11 | 1.429042 | expressed protein with apparent function in | |
| PAKAF_02109 | 3 | 13 | 0.571076 | putative repressor of atu genes | |
| PAKAF_02110 | 1 | 12 | 1.286683 | CPBP family intramembrane metalloprotease | |
| PAKAF_02111 | 1 | 12 | 1.405116 | DUF2897 family protein | |
| PAKAF_02112 | -1 | 10 | 1.690233 | probable two-component sensor | |
| PAKAF_02113 | -1 | 10 | 1.922038 | probable two-component response regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02094 | OMPADOMAIN | 102 | 2e-27 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02095 | HTHFIS | 50 | 1e-09 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02099 | IGASERPTASE | 36 | 1e-04 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02100 | IGASERPTASE | 42 | 1e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02102 | DHBDHDRGNASE | 81 | 3e-20 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02103 | RTXTOXIND | 38 | 2e-04 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02104 | adhesinmafb | 28 | 0.037 | Neisseria meningitidis: adhesin MafB signature. | |
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02107 | DHBDHDRGNASE | 119 | 3e-34 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02109 | HTHTETR | 70 | 4e-17 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02112 | PF06580 | 45 | 2e-07 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02113 | HTHFIS | 98 | 5e-25 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 103 | PAKAF_02413 | PAKAF_02417 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02413 | 0 | 7 | 1.255442 | two-component sensor PfeS | |
| PAKAF_02414 | 0 | 6 | 1.019314 | two-component response regulator PfeR | |
| PAKAF_02415 | 0 | 7 | 1.491353 | VgrG1c | |
| PAKAF_02416 | 1 | 6 | 2.906542 | Tse5 | |
| PAKAF_02417 | -1 | 9 | 2.643635 | Tsi5 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02413 | PF06580 | 40 | 2e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02414 | HTHFIS | 95 | 4e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02415 | ICENUCLEATIN | 31 | 0.018 | Ice nucleation protein signature. | |
>ICENUCLEATIN#Ice nucleation protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02417 | PREPILNPTASE | 25 | 0.030 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| 104 | PAKAF_02423 | PAKAF_02434 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02423 | -1 | 30 | -3.119170 | probable permease of ABC-2 transporter | |
| PAKAF_02424 | 0 | 31 | -2.098433 | probable type II secretion protein | |
| PAKAF_02425 | 1 | 36 | -1.547822 | probable type II secretion system protein | |
| PAKAF_02426 | 1 | 42 | -1.766994 | probable type II secretion system protein | |
| PAKAF_02427 | 2 | 43 | -2.192386 | probable type II secretion system protein | |
| PAKAF_02428 | 2 | 43 | -2.322453 | probable type II secretion system protein | |
| PAKAF_02429 | 1 | 39 | -3.411090 | probable type II secretion system protein | |
| PAKAF_02430 | 1 | 38 | -4.283237 | hypothetical protein | |
| PAKAF_02431 | 0 | 24 | -2.119910 | hypothetical protein | |
| PAKAF_02432 | -1 | 14 | -1.466375 | hypothetical protein | |
| PAKAF_02433 | -1 | 14 | -0.778661 | hypothetical protein | |
| PAKAF_02434 | 1 | 11 | 0.227403 | MvaU |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02423 | ABC2TRNSPORT | 34 | 3e-04 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02425 | BCTERIALGSPF | 185 | 9e-57 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02426 | BCTERIALGSPG | 118 | 3e-37 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02427 | BCTERIALGSPG | 39 | 1e-06 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02428 | PilS_PF08805 | 30 | 0.003 | PilS N terminal | |
>PilS_PF08805#PilS N terminal | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02429 | BCTERIALGSPH | 30 | 0.004 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02434 | PYOCINKILLER | 29 | 0.005 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
| 105 | PAKAF_02443 | PAKAF_02448 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02443 | 0 | 10 | 1.191005 | hypothetical protein | |
| PAKAF_02444 | 0 | 8 | 0.801313 | hypothetical protein | |
| PAKAF_02445 | 0 | 9 | 0.828808 | two-component response regulator BqsR | |
| PAKAF_02446 | 1 | 8 | 0.299657 | two-component sensor BqsS | |
| PAKAF_02447 | 0 | 8 | 0.470719 | hypothetical protein | |
| PAKAF_02448 | 0 | 9 | 0.456837 | probable chemotaxis transducer |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02443 | THERMOLYSIN | 27 | 0.010 | Thermolysin metalloprotease (M4) family signature. | |
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02445 | HTHFIS | 78 | 9e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02446 | PF06580 | 38 | 5e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02448 | FLAGELLIN | 30 | 0.041 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| 106 | PAKAF_02583 | PAKAF_02592 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_02583 | 2 | 16 | 1.395669 | MuxA | |
| PAKAF_02584 | 2 | 16 | 1.213837 | MuxB | |
| PAKAF_02585 | 1 | 13 | 1.796692 | MuxC | |
| PAKAF_02586 | 1 | 12 | 2.687945 | OpmB | |
| PAKAF_02587 | 0 | 12 | 1.869446 | hypothetical protein | |
| PAKAF_02588 | 0 | 12 | 1.794997 | CzcS | |
| PAKAF_02589 | -1 | 12 | 1.425250 | CzcR | |
| PAKAF_02590 | 0 | 12 | 1.428965 | outer membrane protein precursor CzcC | |
| PAKAF_02591 | -1 | 13 | 1.190648 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_02592 | 0 | 13 | 0.980960 | Resistance-Nodulation-Cell Division (RND) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02583 | RTXTOXIND | 44 | 8e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02584 | ACRIFLAVINRP | 840 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02585 | ACRIFLAVINRP | 816 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02586 | RTXTOXIND | 38 | 6e-05 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02588 | PF06580 | 36 | 3e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02589 | HTHFIS | 81 | 7e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02591 | RTXTOXIND | 46 | 2e-07 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_02592 | ACRIFLAVINRP | 811 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 107 | PAKAF_03108 | PAKAF_03111 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03108 | 1 | 12 | 1.226375 | DUF3203 family protein | |
| PAKAF_03109 | 1 | 13 | 0.942325 | probable transcriptional regulator | |
| PAKAF_03110 | 1 | 13 | 1.060807 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_03111 | 0 | 13 | 0.521087 | Resistance-Nodulation-Cell Division (RND) |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03108 | PF05272 | 28 | 0.002 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03109 | HTHTETR | 66 | 1e-15 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03110 | RTXTOXIND | 42 | 3e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03111 | ACRIFLAVINRP | 1092 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 108 | PAKAF_03417 | PAKAF_03424 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03417 | -1 | 7 | -0.003887 | ribonuclease E inhibitor RraB | |
| PAKAF_03418 | -1 | 7 | 0.011188 | MucR | |
| PAKAF_03419 | 0 | 9 | 0.051799 | periplasmic beta-glucosidase | |
| PAKAF_03420 | 4 | 18 | -0.170097 | type III export protein PscL | |
| PAKAF_03421 | 4 | 19 | -0.944546 | type III export protein PscK | |
| PAKAF_03422 | 3 | 18 | -1.349641 | type III export protein PscJ | |
| PAKAF_03423 | 4 | 15 | 0.367498 | type III export protein PscI | |
| PAKAF_03424 | 1 | 14 | 0.536122 | type III export protein PscH |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03417 | SECBCHAPRONE | 26 | 0.025 | Bacterial protein-transport SecB chaperone protein ... | |
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03420 | TYPE4SSCAGX | 30 | 0.009 | Type IV secretion system CagX conjugation protein si... | |
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03422 | FLGMRINGFLIF | 75 | 1e-17 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03424 | PF09025 | 205 | 2e-71 | YopR Core | |
>PF09025#YopR Core | |||||
| 109 | PAKAF_03429 | PAKAF_03439 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03429 | -2 | 18 | -0.800843 | Type III secretion outer membrane protein PscC | |
| PAKAF_03430 | 1 | 26 | -1.898200 | type III export apparatus protein | |
| PAKAF_03431 | 1 | 24 | -2.222643 | ExsD | |
| PAKAF_03432 | 2 | 24 | -2.739046 | transcriptional regulator ExsA | |
| PAKAF_03433 | 2 | 21 | -1.016333 | exoenzyme S synthesis protein B | |
| PAKAF_03434 | 2 | 18 | -1.497757 | ExsE | |
| PAKAF_03435 | 2 | 17 | -1.507800 | ExsC, exoenzyme S synthesis protein C precursor | |
| PAKAF_03436 | 2 | 15 | -0.672302 | Translocator outer membrane protein PopD | |
| PAKAF_03437 | 3 | 13 | -0.989206 | translocator protein PopB | |
| PAKAF_03438 | 3 | 14 | -0.536532 | regulatory protein PcrH | |
| PAKAF_03439 | 4 | 15 | 0.044286 | type III secretion protein PcrV |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03429 | TYPE3OMGPROT | 816 | 0.0 | Type III secretion system outer membrane G protein ... | |
>TYPE3OMGPROT#Type III secretion system outer membrane G protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03430 | PF05932 | 93 | 2e-27 | Tir chaperone protein (CesT) | |
>PF05932#Tir chaperone protein (CesT) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03435 | PF05932 | 47 | 6e-10 | Tir chaperone protein (CesT) | |
>PF05932#Tir chaperone protein (CesT) | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03436 | PF05844 | 385 | e-137 | YopD protein | |
>PF05844#YopD protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03438 | SYCDCHAPRONE | 202 | 2e-69 | Gram-negative bacterial type III secretion SycD cha... | |
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03439 | LCRVANTIGEN | 344 | e-121 | Low calcium response V antigen signature. | |
>LCRVANTIGEN#Low calcium response V antigen signature. | |||||
| 110 | PAKAF_03447 | PAKAF_03455 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03447 | 1 | 15 | 2.400556 | Type III secretion outer membrane protein PopN | |
| PAKAF_03448 | 0 | 15 | 2.055314 | ATP synthase in type III secretion system | |
| PAKAF_03449 | 3 | 17 | 1.532271 | translocation protein in type III secretion | |
| PAKAF_03450 | 3 | 17 | 0.472186 | translocation protein in type III secretion | |
| PAKAF_03451 | 2 | 11 | -1.138468 | translocation protein in type III secretion | |
| PAKAF_03452 | 1 | 10 | -1.652441 | translocation protein in type III secretion | |
| PAKAF_03453 | 1 | 11 | -1.573790 | probable translocation protein in type III | |
| PAKAF_03454 | 0 | 9 | -0.727132 | translocation protein in type III secretion | |
| PAKAF_03455 | -1 | 9 | -0.864181 | translocation protein in type III secretion |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03447 | PF07201 | 284 | 4e-98 | Hypersensitivity response secretion protein HrpJ | |
>PF07201#Hypersensitivity response secretion protein HrpJ | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03450 | IGASERPTASE | 43 | 2e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03451 | TYPE3OMOPROT | 84 | 2e-20 | Type III secretion system outer membrane O protein ... | |
>TYPE3OMOPROT#Type III secretion system outer membrane O protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03452 | TYPE3IMPPROT | 246 | 3e-85 | Type III secretion system inner membrane P protein ... | |
>TYPE3IMPPROT#Type III secretion system inner membrane P protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03453 | TYPE3IMQPROT | 68 | 4e-19 | Type III secretion system inner membrane Q protein ... | |
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03454 | TYPE3IMRPROT | 142 | 1e-43 | Type III secretion system inner membrane R protein ... | |
>TYPE3IMRPROT#Type III secretion system inner membrane R protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03455 | TYPE3IMSPROT | 422 | e-150 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| 111 | PAKAF_03701 | PAKAF_03730 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03701 | 1 | 12 | -0.945610 | MotD | |
| PAKAF_03702 | 1 | 12 | -1.092808 | MotC | |
| PAKAF_03703 | 1 | 11 | -1.325721 | probable methyltransferase | |
| PAKAF_03704 | -1 | 10 | -1.028018 | probable two-component sensor | |
| PAKAF_03705 | 0 | 9 | -1.563314 | chemotaxis protein CheZ | |
| PAKAF_03706 | 0 | 13 | -0.391834 | two-component response regulator CheY | |
| PAKAF_03707 | 0 | 15 | 0.290361 | sigma factor FliA | |
| PAKAF_03708 | 0 | 15 | 0.536157 | flagellar synthesis regulator FleN | |
| PAKAF_03709 | 2 | 17 | 0.709487 | flagellar biosynthesis protein FlhF | |
| PAKAF_03710 | 2 | 17 | 0.268645 | flagellar biosynthesis protein FlhA | |
| PAKAF_03711 | 3 | 20 | 0.340276 | YgcG family protein | |
| PAKAF_03712 | 4 | 19 | 0.195674 | Beta-propeller domains of methanol dehydrogenase | |
| PAKAF_03713 | 6 | 19 | -0.542127 | flagellar biosynthetic protein FlhB | |
| PAKAF_03714 | 5 | 19 | -1.250198 | flagellar biosynthetic protein FliR | |
| PAKAF_03715 | 3 | 17 | -1.720443 | flagellar biosynthetic protein FliQ | |
| PAKAF_03716 | 0 | 12 | -0.451094 | flagellar biosynthetic protein FliP | |
| PAKAF_03717 | 1 | 9 | -0.128731 | flagellar protein FliO | |
| PAKAF_03718 | 0 | 8 | -0.801229 | flagellar motor switch protein FliN | |
| PAKAF_03719 | 0 | 11 | 0.199043 | flagellar motor switch protein FliM | |
| PAKAF_03720 | 0 | 11 | 0.599477 | flagellar basal body-associated protein FliL | |
| PAKAF_03721 | 0 | 12 | 0.927239 | flagellar hook-length control protein FliK | |
| PAKAF_03722 | 1 | 14 | 1.019663 | YecA family protein | |
| PAKAF_03723 | 1 | 14 | 1.338592 | conserved hypothetical protein | |
| PAKAF_03724 | 0 | 12 | 1.484622 | probable two-component sensor | |
| PAKAF_03725 | -1 | 10 | 0.446187 | probable two-component response regulator | |
| PAKAF_03726 | -2 | 9 | 0.125238 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_03727 | -1 | 13 | -1.195929 | probable Resistance-Nodulation-Cell Division | |
| PAKAF_03728 | -2 | 9 | -0.520056 | hypothetical protein | |
| PAKAF_03729 | -2 | 10 | -0.766891 | EAL domain-containing protein | |
| PAKAF_03730 | -2 | 16 | -1.726856 | autoinducer synthesis protein LasI |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03701 | OMPADOMAIN | 69 | 1e-15 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03703 | HTHFIS | 59 | 8e-12 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03704 | PF06580 | 42 | 7e-06 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03706 | HTHFIS | 90 | 2e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03711 | cloacin | 30 | 0.021 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03712 | cloacin | 36 | 2e-04 | Cloacin signature. | |
>cloacin#Cloacin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03713 | TYPE3IMSPROT | 336 | e-116 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03714 | TYPE3IMRPROT | 135 | 7e-41 | Type III secretion system inner membrane R protein ... | |
>TYPE3IMRPROT#Type III secretion system inner membrane R protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03715 | TYPE3IMQPROT | 55 | 9e-14 | Type III secretion system inner membrane Q protein ... | |
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03716 | FLGBIOSNFLIP | 264 | 2e-91 | Escherichia coli: Flagellar biosynthetic protein Fl... | |
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03718 | FLGMOTORFLIN | 119 | 1e-37 | Flagellar motor switch protein FliN signature. | |
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03719 | FLGMOTORFLIM | 259 | 2e-87 | Flagellar motor switch protein FliM signature. | |
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03721 | FLGHOOKFLIK | 52 | 2e-09 | Flagellar hook-length control protein signature. | |
>FLGHOOKFLIK#Flagellar hook-length control protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03724 | PF06580 | 29 | 0.031 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03725 | HTHFIS | 86 | 1e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03726 | ACRIFLAVINRP | 708 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03727 | RTXTOXIND | 51 | 6e-09 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03730 | AUTOINDCRSYN | 153 | 5e-49 | Autoinducer synthesis protein signature. | |
>AUTOINDCRSYN#Autoinducer synthesis protein signature. | |||||
| 112 | PAKAF_03782 | PAKAF_03789 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03782 | 0 | 33 | -5.786452 | UDP-glucose 4-epimerase | |
| PAKAF_03783 | 1 | 27 | -4.930723 | hypothetical protein | |
| PAKAF_03784 | -2 | 24 | -3.177540 | probable type II secretion system protein | |
| PAKAF_03785 | -3 | 13 | -0.788237 | hypothetical protein | |
| PAKAF_03786 | -1 | 13 | 1.127388 | probable transcriptional regulator | |
| PAKAF_03787 | -2 | 13 | 0.870003 | probable short-chain dehydrogenase | |
| PAKAF_03788 | -2 | 14 | 1.620314 | hypothetical protein | |
| PAKAF_03789 | -2 | 10 | 1.098735 | acetyltransferase, GNAT family |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03782 | NUCEPIMERASE | 181 | 1e-56 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03784 | BCTERIALGSPD | 198 | 1e-56 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03787 | DHBDHDRGNASE | 110 | 3e-31 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03789 | SACTRNSFRASE | 37 | 9e-06 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| 113 | PAKAF_03795 | PAKAF_03799 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03795 | 0 | 20 | -3.346327 | transcriptional regulator,Probable acrEF/envCD | |
| PAKAF_03796 | 0 | 21 | -3.065910 | putative multidrug efflux gene product,Multidrug | |
| PAKAF_03797 | 0 | 20 | -3.370413 | putative AcrB/AcrD/AcrF family protein,Swarming | |
| PAKAF_03798 | -1 | 17 | -2.557173 | short chain | |
| PAKAF_03799 | -1 | 15 | -1.781582 | transcriptional regulator, TetR family,HTH-type |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03795 | HTHTETR | 60 | 2e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03796 | RTXTOXIND | 43 | 2e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03797 | ACRIFLAVINRP | 429 | e-136 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03798 | DHBDHDRGNASE | 101 | 1e-27 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03799 | HTHTETR | 60 | 3e-13 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 114 | PAKAF_03922 | PAKAF_03932 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03922 | -1 | 11 | 1.018458 | alkaline proteinase inhibitor AprI | |
| PAKAF_03923 | -2 | 10 | 0.684438 | alkaline metalloproteinase precursor | |
| PAKAF_03924 | -3 | 9 | 1.777971 | Alkaline protease secretion outer membrane | |
| PAKAF_03925 | -2 | 9 | 2.114708 | alkaline protease secretion protein AprE | |
| PAKAF_03926 | -1 | 8 | 2.059322 | alkaline protease secretion protein AprD | |
| PAKAF_03927 | 0 | 9 | 1.840737 | hypothetical protein | |
| PAKAF_03929 | -1 | 9 | 2.180584 | hypothetical protein | |
| PAKAF_03930 | -1 | 10 | 2.623630 | probable sensor/response regulator hybrid | |
| PAKAF_03931 | -1 | 10 | 2.859520 | S8/S53 family peptidase | |
| PAKAF_03932 | 2 | 12 | 4.448262 | probable transcriptional regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03922 | MPTASEINHBTR | 129 | 5e-42 | Metalloprotease inhibitor signature. | |
>MPTASEINHBTR#Metalloprotease inhibitor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03923 | CABNDNGRPT | 418 | e-145 | NodO calcium binding signature. | |
>CABNDNGRPT#NodO calcium binding signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03925 | RTXTOXIND | 438 | e-154 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03930 | HTHFIS | 82 | 3e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03931 | SUBTILISIN | 88 | 3e-21 | Subtilisin serine protease family (S8) signature. | |
>SUBTILISIN#Subtilisin serine protease family (S8) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03932 | HTHTETR | 45 | 3e-08 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 115 | PAKAF_03938 | PAKAF_03944 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_03938 | 1 | 13 | 3.238908 | probable multidrug resistance efflux pump | |
| PAKAF_03939 | 1 | 14 | 2.518785 | probable major facilitator superfamily (MFS) | |
| PAKAF_03940 | 0 | 17 | 2.542453 | probable transcriptional regulator | |
| PAKAF_03941 | 0 | 15 | 2.111252 | thioredoxin family protein | |
| PAKAF_03942 | 0 | 14 | 2.465336 | DUF2790 domain-containing protein | |
| PAKAF_03943 | 1 | 14 | 2.654013 | FUSC family protein | |
| PAKAF_03944 | -1 | 13 | 2.404349 | HlyD family secretion protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03938 | RTXTOXIND | 121 | 1e-32 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03939 | TCRTETB | 109 | 6e-28 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03940 | HTHFIS | 33 | 9e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_03944 | RTXTOXIND | 65 | 6e-14 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 116 | PAKAF_04010 | PAKAF_04018 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04010 | -1 | 15 | 2.857679 | PcpS | |
| PAKAF_04011 | 0 | 15 | 2.132891 | tRNA cyclic N6-threonylcarbamoyladenosine(37) | |
| PAKAF_04012 | -1 | 12 | 2.123375 | NdvB | |
| PAKAF_04013 | -2 | 10 | 2.192849 | succinyl-diaminopimelate desuccinylase | |
| PAKAF_04014 | -1 | 14 | 0.340086 | rRNA methyltransferase | |
| PAKAF_04015 | 0 | 15 | -1.018905 | hypothetical protein | |
| PAKAF_04016 | 0 | 13 | -1.480706 | probable cold-shock protein | |
| PAKAF_04017 | 0 | 12 | -0.935461 | probable two-component sensor | |
| PAKAF_04018 | 0 | 14 | -4.706819 | probable two-component response regulator |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04010 | ENTSNTHTASED | 89 | 2e-23 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04011 | ISCHRISMTASE | 30 | 0.009 | Isochorismatase signature. | |
>ISCHRISMTASE#Isochorismatase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04012 | PF05704 | 31 | 0.024 | Capsular polysaccharide synthesis protein | |
>PF05704#Capsular polysaccharide synthesis protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04017 | PF06580 | 42 | 3e-06 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04018 | HTHFIS | 81 | 3e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 117 | PAKAF_04068 | PAKAF_04079 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04068 | 1 | 8 | 1.689914 | probable major facilitator superfamily (MFS) | |
| PAKAF_04069 | 1 | 10 | 0.100457 | diguanylate cyclase | |
| PAKAF_04070 | 0 | 11 | 0.105379 | hypothetical protein | |
| PAKAF_04071 | 0 | 9 | -0.139323 | flagellar protein FliJ | |
| PAKAF_04072 | 0 | 8 | 0.391273 | flagellum-specific ATP synthase FliI | |
| PAKAF_04073 | -1 | 10 | 0.312705 | probable flagellar assembly protein | |
| PAKAF_04074 | -1 | 9 | 0.121024 | flagellar motor switch protein FliG | |
| PAKAF_04075 | -2 | 9 | 0.205121 | Flagella M-ring outer membrane protein | |
| PAKAF_04076 | 0 | 10 | -0.107215 | flagellar hook-basal body complex protein FliE | |
| PAKAF_04077 | 0 | 10 | 0.294956 | two-component response regulator | |
| PAKAF_04078 | -1 | 11 | -2.056257 | two-component sensor | |
| PAKAF_04079 | -1 | 12 | -3.244304 | transcriptional regulator FleQ |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04068 | TCRTETA | 57 | 4e-11 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04071 | FLGFLIJ | 54 | 2e-12 | Flagellar FliJ protein signature. | |
>FLGFLIJ#Flagellar FliJ protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04073 | FLGFLIH | 47 | 3e-09 | Flagellar assembly protein FliH signature. | |
>FLGFLIH#Flagellar assembly protein FliH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04074 | FLGMOTORFLIG | 305 | e-105 | Flagellar motor switch protein FliG signature. | |
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04075 | FLGMRINGFLIF | 603 | 0.0 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04076 | FLGHOOKFLIE | 91 | 1e-27 | Flagellar hook-basal body complex protein FliE signa... | |
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04077 | HTHFIS | 503 | e-179 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04078 | PF06580 | 37 | 1e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04079 | HTHFIS | 510 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 118 | PAKAF_04096 | PAKAF_04109 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04096 | -1 | 8 | -2.630911 | short chain dehydrogenase/reductase family | |
| PAKAF_04097 | -1 | 8 | -2.129672 | 3-oxoacyl-ACP | |
| PAKAF_04098 | -1 | 10 | -1.813419 | acyl carrier protein | |
| PAKAF_04099 | -1 | 11 | -1.455439 | nucleotide sugar | |
| PAKAF_04100 | 1 | 12 | -1.369225 | flagellar hook-associated protein | |
| PAKAF_04101 | 1 | 12 | -0.983446 | flagellar hook-associated protein 1 FlgK | |
| PAKAF_04102 | 1 | 14 | -0.985194 | flagellar protein FlgJ | |
| PAKAF_04103 | 3 | 14 | -1.683982 | flagellar P-ring protein precursor FlgI | |
| PAKAF_04104 | 3 | 14 | -2.497347 | flagellar L-ring protein precursor FlgH | |
| PAKAF_04105 | 3 | 14 | -2.990902 | flagellar basal-body rod protein FlgG | |
| PAKAF_04106 | 0 | 13 | -3.264497 | flagellar basal-body rod protein FlgF | |
| PAKAF_04107 | 1 | 12 | -3.251842 | flagellar hook protein FlgE | |
| PAKAF_04108 | 0 | 14 | -3.599933 | flagellar basal-body rod modification protein | |
| PAKAF_04109 | 0 | 13 | -3.549588 | flagellar basal-body rod protein FlgC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04096 | DHBDHDRGNASE | 108 | 2e-30 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04100 | FLAGELLIN | 55 | 3e-10 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04101 | FLGHOOKAP1 | 244 | 1e-74 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04102 | FLGFLGJ | 148 | 1e-43 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04103 | FLGPRINGFLGI | 436 | e-155 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04104 | FLGLRINGFLGH | 180 | 3e-59 | Flagellar L-ring protein signature. | |
>FLGLRINGFLGH#Flagellar L-ring protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04105 | FLGHOOKAP1 | 45 | 2e-07 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04107 | FLGHOOKAP1 | 45 | 5e-07 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04109 | FLGHOOKAP1 | 36 | 3e-05 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 119 | PAKAF_04212 | PAKAF_04217 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04212 | 1 | 20 | -4.572427 | tol-pal system protein YbgF | |
| PAKAF_04213 | 0 | 21 | -5.099523 | Peptidoglycan associated lipoprotein OprL | |
| PAKAF_04214 | 1 | 19 | -4.841498 | TolB protein | |
| PAKAF_04215 | 1 | 23 | -4.990618 | TolA protein | |
| PAKAF_04216 | 1 | 24 | -4.387962 | TolR protein | |
| PAKAF_04217 | 1 | 22 | -4.051332 | TolQ protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04212 | RTXTOXIND | 32 | 0.002 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04213 | OMPADOMAIN | 116 | 6e-34 | OMPA domain signature. | |
>OMPADOMAIN#OMPA domain signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04215 | IGASERPTASE | 48 | 4e-08 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04217 | 60KDINNERMP | 29 | 0.017 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| 120 | PAKAF_04461 | PAKAF_04468 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04461 | -2 | 12 | 0.677380 | probable two-component response regulator | |
| PAKAF_04462 | -2 | 11 | -0.044526 | cis-aconitate porin OpdH | |
| PAKAF_04463 | -1 | 9 | 0.361790 | tripartite tricarboxylate transporter | |
| PAKAF_04464 | 1 | 8 | 0.725488 | tripartite tricarboxylate transporter TctB | |
| PAKAF_04465 | 0 | 8 | 0.566406 | tripartite tricarboxylate transporter permease | |
| PAKAF_04466 | -1 | 9 | 0.963810 | AbrB family transcriptional regulator | |
| PAKAF_04467 | -2 | 12 | 0.860328 | uracil-DNA glycosylase | |
| PAKAF_04468 | -2 | 10 | 1.447855 | hypothetical protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04461 | HTHFIS | 83 | 8e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04463 | AEROLYSIN | 29 | 0.028 | Aerolysin signature. | |
>AEROLYSIN#Aerolysin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04464 | ACRIFLAVINRP | 27 | 0.044 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04468 | PF05043 | 30 | 0.010 | Transcriptional activator | |
>PF05043#Transcriptional activator | |||||
| 121 | PAKAF_04521 | PAKAF_04531 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04521 | 1 | 11 | 3.608110 | probable type II secretion system protein | |
| PAKAF_04522 | 0 | 11 | 3.045487 | probable type II secretion system protein | |
| PAKAF_04523 | -1 | 12 | 2.800255 | probable type II secretion system protein | |
| PAKAF_04524 | 2 | 18 | 3.038679 | probable type II secretion system protein | |
| PAKAF_04525 | 1 | 15 | 3.385404 | probable type II secretion system protein | |
| PAKAF_04526 | 1 | 16 | 2.876951 | HxcX atypical pseudopilin | |
| PAKAF_04527 | 1 | 14 | 3.158381 | HxcT pseudopilin | |
| PAKAF_04528 | -1 | 14 | 2.671338 | HxcV putative pseudopilin | |
| PAKAF_04529 | -1 | 16 | 2.877198 | hypothetical protein | |
| PAKAF_04530 | -1 | 15 | 2.392923 | HxcU putative pseudopilin | |
| PAKAF_04531 | 0 | 13 | 1.673753 | HxcW putative pseudopilin |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04521 | BCTERIALGSPF | 378 | e-131 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04523 | BCTERIALGSPD | 256 | 4e-77 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04527 | BCTERIALGSPG | 167 | 1e-56 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04528 | BCTERIALGSPG | 30 | 0.001 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04530 | BCTERIALGSPH | 34 | 8e-05 | Bacterial general secretion pathway protein H signa... | |
>BCTERIALGSPH#Bacterial general secretion pathway protein H | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04531 | BCTERIALGSPG | 32 | 6e-04 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| 122 | PAKAF_04557 | PAKAF_04571 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04557 | 1 | 15 | -0.455671 | two-component response regulator, PprB,Alginate | |
| PAKAF_04558 | 1 | 14 | 0.194177 | protein TadG,Predicted membrane protein | |
| PAKAF_04559 | 3 | 12 | 1.820081 | Protein of unknown function (DUF3613) | |
| PAKAF_04560 | 2 | 14 | 1.546300 | pilus assembly protein,Flp pilus assembly | |
| PAKAF_04561 | 2 | 13 | 1.400927 | protein TadC,Flp pilus assembly protein | |
| PAKAF_04562 | 1 | 12 | 1.159843 | protein TadB,Flp pilus assembly protein | |
| PAKAF_04563 | 0 | 7 | 0.173091 | putative type II secretion system | |
| PAKAF_04564 | -1 | 7 | 0.313910 | protein TadZ,Flp pilus assembly protein, ATPase | |
| PAKAF_04565 | -1 | 8 | -0.570491 | type II secretion system protein,Pullulanase | |
| PAKAF_04566 | -1 | 10 | -0.976052 | RcpC,Flp pilus assembly protein CpaB,Flp pilus | |
| PAKAF_04567 | -1 | 11 | -1.125925 | type IVb pilin, Flp,Flp pilus assembly protein, | |
| PAKAF_04568 | -1 | 10 | -0.693233 | chemotactic transducer PctC,H3,methyl-accepting | |
| PAKAF_04569 | -1 | 9 | -0.324863 | ATPase,Ornithine/acetylornithine | |
| PAKAF_04570 | -1 | 11 | -0.565364 | chemotactic transducer,H3,methyl-accepting | |
| PAKAF_04571 | 0 | 9 | -0.892945 | chemotactic transducer PctB,H3,methyl-accepting |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04557 | HTHFIS | 74 | 5e-17 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04558 | BCTERIALGSPC | 30 | 0.031 | Bacterial general secretion pathway protein C signa... | |
>BCTERIALGSPC#Bacterial general secretion pathway protein C | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04559 | TYPE3OMGPROT | 27 | 0.013 | Type III secretion system outer membrane G protein ... | |
>TYPE3OMGPROT#Type III secretion system outer membrane G protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04564 | HTHFIS | 33 | 0.002 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04565 | BCTERIALGSPD | 146 | 2e-40 | Bacterial general secretion pathway protein D signa... | |
>BCTERIALGSPD#Bacterial general secretion pathway protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04568 | RTXTOXINA | 31 | 0.019 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04570 | RTXTOXINA | 31 | 0.018 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04571 | RTXTOXINA | 30 | 0.026 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| 123 | PAKAF_04617 | PAKAF_04624 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04617 | -1 | 10 | 1.130869 | probable major facilitator superfamily (MFS) | |
| PAKAF_04618 | 0 | 10 | 0.592453 | xenobiotic reductase | |
| PAKAF_04619 | -2 | 11 | 0.337489 | ferrous iron-sensisng transcriptional regulator | |
| PAKAF_04620 | -1 | 9 | 0.853334 | probable ferrous iron transport protein | |
| PAKAF_04621 | -1 | 12 | 1.670295 | ferrous iron transporter A | |
| PAKAF_04622 | -1 | 12 | 1.856162 | ATPase | |
| PAKAF_04623 | -1 | 13 | 2.786480 | hypothetical protein | |
| PAKAF_04624 | 0 | 9 | 1.729750 | probable oxidoreductase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04617 | TCRTETB | 50 | 8e-09 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04620 | TCRTETOQM | 35 | 0.001 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04622 | GPOSANCHOR | 30 | 0.009 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04624 | NUCEPIMERASE | 109 | 1e-29 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| 124 | PAKAF_04708 | PAKAF_04714 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04708 | -1 | 10 | -2.176221 | alpha/beta hydrolase | |
| PAKAF_04709 | 0 | 10 | -1.866523 | DUF1043 family protein | |
| PAKAF_04710 | 1 | 9 | -2.011690 | ATP sulfurylase GTP-binding subunit/APS kinase | |
| PAKAF_04711 | 2 | 10 | -1.293738 | ATP sulfurylase small subunit | |
| PAKAF_04712 | 2 | 10 | -0.609684 | soluble and membrane-bound lytic | |
| PAKAF_04713 | 4 | 12 | -0.619317 | Nif3-like dinuclear metal center hexameric | |
| PAKAF_04714 | 4 | 12 | -0.888816 | AlgW protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04708 | FLAGELLIN | 29 | 0.008 | Flagellin signature. | |
>FLAGELLIN#Flagellin signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04710 | TCRTETOQM | 68 | 5e-14 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04711 | TCRTETOQM | 28 | 0.046 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04714 | V8PROTEASE | 61 | 2e-12 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
| 125 | PAKAF_04795 | PAKAF_04805 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04795 | 0 | 22 | -6.650640 | nicotinate-nucleotide pyrophosphorylase | |
| PAKAF_05939 | 0 | 24 | -7.592283 | *type 4 fimbrial precursor PilA | |
| PAKAF_04797 | 1 | 19 | -6.354892 | type 4 fimbrial biogenesis protein PilB | |
| PAKAF_04798 | 2 | 20 | -5.548100 | type 4 fimbrial biogenesis protein PilC | |
| PAKAF_04799 | 2 | 14 | -1.263507 | type 4 prepilin peptidase PilD | |
| PAKAF_04800 | 0 | 17 | -0.936381 | dephosphocoenzyme A kinase | |
| PAKAF_04801 | 2 | 17 | -1.135914 | DNA gyrase inhibitor YacG | |
| PAKAF_04802 | 0 | 17 | -1.161029 | hypothetical protein | |
| PAKAF_04803 | 0 | 15 | -0.848879 | membrane protein | |
| PAKAF_04804 | -4 | 13 | -0.330661 | hypothetical protein | |
| PAKAF_04805 | -2 | 14 | -0.934138 | GNAT family N-acetyltransferase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04795 | RTXTOXIND | 29 | 0.021 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05939 | BCTERIALGSPG | 47 | 1e-09 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04798 | BCTERIALGSPF | 466 | e-167 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04799 | PREPILNPTASE | 354 | e-125 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04800 | DHBDHDRGNASE | 30 | 0.005 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04805 | SACTRNSFRASE | 28 | 0.013 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| 126 | PAKAF_04811 | PAKAF_04833 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04811 | -3 | 11 | -0.844890 | ShlB/FhaC/HecB family hemolysin | |
| PAKAF_04812 | -2 | 11 | -0.811428 | filamentous hemagglutinin N-terminal | |
| PAKAF_04816 | 0 | 9 | -0.551228 | ***ClpB protein | |
| PAKAF_04817 | -2 | 13 | 0.171097 | peptidoglycan editing factor PgeF | |
| PAKAF_04818 | -2 | 12 | -0.505038 | pseudouridine synthase | |
| PAKAF_04819 | 0 | 13 | -0.771265 | competence protein ComL | |
| PAKAF_04820 | 0 | 14 | -0.991009 | MYND finger | |
| PAKAF_04821 | 1 | 12 | -1.337278 | two-component sensor PilS | |
| PAKAF_04822 | 0 | 12 | -2.173263 | two-component response regulator PilR | |
| PAKAF_04823 | -1 | 17 | -3.116715 | probable D-amino acid oxidase | |
| PAKAF_04824 | 1 | 12 | -3.756730 | type 4 fimbrial biogenesis protein FimT | |
| PAKAF_04825 | 1 | 12 | -3.891266 | type 4 fimbrial biogenesis protein FimU | |
| PAKAF_04826 | 2 | 11 | -3.808838 | type 4 fimbrial biogenesis protein PilV | |
| PAKAF_04827 | 2 | 11 | -3.637635 | type 4 fimbrial biogenesis protein PilW | |
| PAKAF_04828 | 2 | 10 | -3.454617 | type 4 fimbrial biogenesis protein PilX | |
| PAKAF_04829 | 1 | 10 | -3.591139 | type 4 fimbrial biogenesis protein PilY1 | |
| PAKAF_04830 | 1 | 11 | -2.815322 | type 4 fimbrial biogenesis protein PilY2 | |
| PAKAF_04831 | 0 | 10 | -2.232668 | type 4 fimbrial biogenesis protein PilE | |
| PAKAF_04832 | -1 | 8 | -2.179598 | LytB protein | |
| PAKAF_04833 | -1 | 9 | -2.327917 | probable peptidyl-prolyl cis-trans isomerase, |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04811 | PF00577 | 37 | 2e-04 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04812 | PF05860 | 65 | 1e-14 | haemagglutination activity domain. | |
>PF05860#haemagglutination activity domain. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04816 | HTHFIS | 43 | 4e-06 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04820 | 60KDINNERMP | 25 | 0.028 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04822 | HTHFIS | 525 | 0.0 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04824 | BCTERIALGSPG | 33 | 2e-04 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04825 | BCTERIALGSPG | 41 | 5e-07 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04826 | PilS_PF08805 | 30 | 0.003 | PilS N terminal | |
>PilS_PF08805#PilS N terminal | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04831 | BCTERIALGSPG | 42 | 1e-07 | Bacterial general secretion pathway protein G signa... | |
>BCTERIALGSPG#Bacterial general secretion pathway protein G | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04832 | PF06704 | 28 | 0.033 | DspF/AvrF protein | |
>PF06704#DspF/AvrF protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04833 | INFPOTNTIATR | 34 | 1e-04 | Macrophage infectivity potentiator signature. | |
>INFPOTNTIATR#Macrophage infectivity potentiator signature. | |||||
| 127 | PAKAF_04869 | PAKAF_04877 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_04869 | -1 | 11 | 1.057154 | probable permease of ABC transporter | |
| PAKAF_04870 | -2 | 8 | -0.256474 | probable ATP-binding component of ABC | |
| PAKAF_04871 | -2 | 10 | 0.246649 | probable ATP-binding component of ABC | |
| PAKAF_04872 | -2 | 13 | 0.297830 | hypothetical protein | |
| PAKAF_04873 | -1 | 7 | 0.632676 | probable transcriptional regulator | |
| PAKAF_04874 | -2 | 10 | 0.456328 | Multidrug efflux outer membrane protein OprJ | |
| PAKAF_04875 | -2 | 10 | 0.020423 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_04876 | -1 | 12 | 0.374813 | Resistance-Nodulation-Cell Division (RND) | |
| PAKAF_04877 | -1 | 13 | -0.182937 | transcriptional regulator NfxB |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04869 | PF05844 | 29 | 0.033 | YopD protein | |
>PF05844#YopD protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04873 | HTHTETR | 35 | 8e-05 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04875 | ACRIFLAVINRP | 1169 | 0.0 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04876 | RTXTOXIND | 43 | 1e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_04877 | HTHTETR | 38 | 8e-06 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
| 128 | PAKAF_05082 | PAKAF_05088 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05082 | 0 | 10 | 1.722808 | PmrA: two-component regulator system response | |
| PAKAF_05083 | 0 | 10 | 1.500086 | PmrB: two-component regulator system signal | |
| PAKAF_05084 | -1 | 10 | 1.791017 | CueR | |
| PAKAF_05086 | 0 | 11 | 1.911556 | EamA family transporter | |
| PAKAF_05087 | -2 | 10 | 1.735529 | serine protein kinase RIO | |
| PAKAF_05088 | -2 | 12 | 2.497583 | cyclic di-GMP phosphodiesterase |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05082 | HTHFIS | 80 | 2e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05083 | PF06580 | 34 | 0.002 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05084 | PF07675 | 30 | 0.002 | Cleaved Adhesin | |
>PF07675#Cleaved Adhesin | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05087 | IGASERPTASE | 31 | 0.008 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05088 | HTHFIS | 74 | 2e-16 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 129 | PAKAF_05173 | PAKAF_05179 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05173 | -1 | 18 | 3.224627 | probable ATP-binding component of ABC | |
| PAKAF_05174 | 2 | 20 | 2.668635 | GNAT family N-acetyltransferase | |
| PAKAF_05175 | 1 | 16 | 1.785571 | urease accessory protein | |
| PAKAF_05176 | 2 | 14 | 0.635086 | urease gamma subunit | |
| PAKAF_05177 | 1 | 13 | 1.410921 | L-methionine sulfoximine N-acetyltransferase | |
| PAKAF_05178 | 2 | 10 | 1.066616 | urease beta subunit | |
| PAKAF_05179 | 0 | 11 | 0.987177 | urease alpha subunit |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05173 | PF05272 | 28 | 0.045 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05174 | SACTRNSFRASE | 37 | 8e-06 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05177 | SACTRNSFRASE | 40 | 8e-07 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05179 | UREASE | 1096 | 0.0 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
| 130 | PAKAF_05477 | PAKAF_05486 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05477 | -2 | 14 | 0.660478 | probable outer membrane protein precursor | |
| PAKAF_05478 | -2 | 14 | -0.345304 | multidrug resistance protein | |
| PAKAF_05479 | -2 | 12 | 0.007881 | drug efflux transporter | |
| PAKAF_05481 | -2 | 12 | 0.378066 | *dTDP-D-glucose 4,6-dehydratase | |
| PAKAF_05482 | -1 | 11 | -0.056837 | dTDP-4-dehydrorhamnose reductase | |
| PAKAF_05483 | -1 | 14 | -0.584421 | glucose-1-phosphate thymidylyltransferase | |
| PAKAF_05484 | 0 | 12 | -0.765437 | dTDP-4-dehydrorhamnose 3,5-epimerase | |
| PAKAF_05485 | 0 | 12 | -1.086306 | DctB | |
| PAKAF_05486 | 1 | 14 | -1.760070 | DctC |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05477 | RTXTOXIND | 34 | 0.001 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05478 | RTXTOXIND | 77 | 2e-17 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05479 | TCRTETB | 109 | 5e-28 | Tetracycline resistance protein TetB signature. | |
>TCRTETB#Tetracycline resistance protein TetB signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05481 | NUCEPIMERASE | 176 | 9e-55 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05482 | NUCEPIMERASE | 46 | 7e-08 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05486 | HTHFIS | 445 | e-156 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| 131 | PAKAF_05547 | PAKAF_05555 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05547 | 2 | 15 | -1.647624 | TIGR02449 family protein | |
| PAKAF_05548 | 1 | 8 | -0.231895 | cell division protein ZapA | |
| PAKAF_05550 | -1 | 8 | -0.052876 | 5-formyltetrahydrofolate cyclo-ligase | |
| PAKAF_05551 | 0 | 9 | -0.445085 | hypothetical protein | |
| PAKAF_05552 | -1 | 7 | -0.054651 | EVE domain-containing protein | |
| PAKAF_05553 | -1 | 8 | -0.348728 | probable permease of ABC transporter | |
| PAKAF_05554 | -3 | 8 | 0.140181 | probable ATP-binding/permease fusion ABC | |
| PAKAF_05555 | -2 | 7 | -0.313958 | HlyD family efflux transporter periplasmic |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05547 | ALARACEMASE | 26 | 0.048 | Alanine racemase signature. | |
>ALARACEMASE#Alanine racemase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05553 | ABC2TRNSPORT | 44 | 4e-07 | ABC-2 type transport system membrane protein signat... | |
>ABC2TRNSPORT#ABC-2 type transport system membrane protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05554 | PF05272 | 32 | 0.013 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05555 | RTXTOXIND | 81 | 6e-19 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| 132 | PAKAF_05649 | PAKAF_05659 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05649 | 0 | 9 | -0.891040 | acetylglutamate kinase | |
| PAKAF_05650 | -1 | 9 | -0.767947 | Sphingosine-responsive Regulator, SphR | |
| PAKAF_05651 | -1 | 10 | -0.663966 | Sphingosine-responsive Regulator, SphA | |
| PAKAF_05652 | -3 | 11 | -0.146753 | Sphingosine-responsive Regulator, SphD | |
| PAKAF_05653 | -3 | 12 | -1.332312 | Sphingosine-responsive Regulator, SphC | |
| PAKAF_05654 | 0 | 13 | -1.892124 | Sphingosine-responsive Regulator, SphB | |
| PAKAF_05655 | -2 | 12 | -1.696114 | acyl-CoA thioesterase | |
| PAKAF_05656 | 0 | 11 | -0.787094 | hypothetical protein | |
| PAKAF_05657 | 0 | 13 | -1.163673 | orotate phosphoribosyltransferase | |
| PAKAF_05658 | 1 | 15 | -1.357519 | catabolite repression control protein | |
| PAKAF_05659 | -1 | 16 | -0.970017 | DUF4870 domain-containing protein |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05649 | CARBMTKINASE | 55 | 8e-11 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05650 | HTHFIS | 29 | 0.029 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05652 | ALARACEMASE | 29 | 0.041 | Alanine racemase signature. | |
>ALARACEMASE#Alanine racemase signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05656 | RTXTOXIND | 30 | 0.008 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05657 | PF00577 | 28 | 0.041 | Outer membrane usher protein FimD | |
>PF00577#Outer membrane usher protein FimD | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05659 | ACRIFLAVINRP | 28 | 0.009 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
| 133 | PAKAF_05686 | PAKAF_05691 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05686 | 0 | 12 | -0.548267 | two-component response regulator PhoB | |
| PAKAF_05687 | -1 | 12 | -0.874998 | two-component sensor PhoR | |
| PAKAF_05688 | -2 | 11 | -1.247184 | HlyC/CorC family transporter | |
| PAKAF_05689 | -2 | 10 | -1.173981 | DUF4124 domain-containing protein | |
| PAKAF_05690 | -1 | 11 | -1.927475 | probable two-component response regulator | |
| PAKAF_05691 | -1 | 12 | -2.027669 | phosphate uptake regulatory protein PhoU |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05686 | HTHFIS | 100 | 2e-26 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05687 | PF06580 | 38 | 6e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05690 | HTHFIS | 91 | 8e-23 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05691 | FLGHOOKAP1 | 28 | 0.033 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
| 134 | PAKAF_05856 | PAKAF_05863 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
| LocusTag | DNBias | CDNBias | %GCBias | Product | |
| PAKAF_05856 | 0 | 10 | -1.470687 | probable short-chain dehydrogenase | |
| PAKAF_05857 | 0 | 9 | -2.756088 | probable transcriptional regulator | |
| PAKAF_05858 | 0 | 9 | -2.448317 | YgdI/YgdR family lipoprotein | |
| PAKAF_05859 | 0 | 9 | -1.266363 | hypothetical protein | |
| PAKAF_05860 | 0 | 9 | -1.124663 | Tim44 domain-containing protein | |
| PAKAF_05861 | -1 | 11 | -1.266571 | probable sodium/proton antiporter | |
| PAKAF_05862 | -1 | 16 | -0.779205 | probable MFS dicarboxylate transporter | |
| PAKAF_05863 | 1 | 19 | 0.257527 | TonB1 |
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05856 | DHBDHDRGNASE | 104 | 5e-29 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05861 | RTXTOXINA | 32 | 0.008 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05862 | TCRTETA | 35 | 6e-04 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
| ORFs having significant similarity with Known Virulence factors | |||||
| LocusTag | Hits | Score | E-value | Comments | |
| PAKAF_05863 | TONBPROTEIN | 115 | 2e-32 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||