>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 29.3 bits (65), Expect = 0.012 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 112 KRVKRTMSAAAAAMAVVSCAMAAAPAAHADAGDGLKVARSNACMGCHAVDRKLVGPSFQQ 171 K+ R +SAAAAA+ V+ A A +A A + + VD V PS Sbjct: 2 KKNLRIVSAAAAALLAVAPIAATAMPVNAATTINADSAINANTNAKYDVD---VTPSISA 58 Query: 172 IAERYKND 179 IA K+D Sbjct: 59 IAAVAKSD 66
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 358 bits (920), Expect = e-124 Identities = 109/344 (31%), Positives = 181/344 (52%), Gaps = 2/344 (0%) Query: 12 DRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLHTAFSF 71 ++TE TPK+ AR++GQVA+S+E+ S AL+ A LS EH ++ Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LIPA 61 Query: 72 DRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTFELKFER 131 +++ + + + LE Y P+L + + A+A+ + G+L+S + + ++ Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 132 LNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHAALADAL 191 +NPI G RIFSI+ ++ SI K +++ + I I + LL L T + Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 192 HLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEIKREHRENEGDPHVKGRIRQQ 251 ++ + G +V++ D ++ +QY K+L+M+K+EIKRE++E EG P +K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 252 QRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARIRELAAE 311 + + R M NV + VVV NPTH A+ + Y GE P V K + +R++A E Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 312 HHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 28 GGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLA 70 GGG G + +G G G + G GTGG + + P+A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 30.1 bits (67), Expect = 0.022 Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 AAATAALVAACGGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLASN 72 A +T+ + G G AS +G + GGGS G GGSG N Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Score = 29.7 bits (66), Expect = 0.025 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 28 GGGGDGGSNASVNTGTGGGDTS-------AGGGSNGGTGGTGGSGSTPLASNQAAITVST 80 GG DG +S N GGG S +G G+ GG G +GG T + A V+ Sbjct: 31 GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Query: 81 G 81 G Sbjct: 91 G 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 4e-21 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 58 MDKSMKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMP 117 M + ILV DD +R ++ L GY V + + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 118 NLDGLAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 167 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-14 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 14/146 (9%) Query: 1 MQKKIKVLCVDDSALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEM 60 M +L DD A IR+++ + ++ + I + D++ DV M Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PRMDGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLD 119 P + D L ++ + RP +PV+++S+ ++A E GA D++ KP D Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FD 107 Query: 120 YSEKLADKVRAASRARVRQNPQPHAA 145 +E + RA + + R + + Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 467 ELDKSLIERIIDPLT--HLVRNSLDHGIETVEARRAAGKDAVGQLVLSAAHHGGNIVIEV 524 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 525 SDDGAGLNRERILAKAAKQGMQISENISDDEVWNLIFAPGFSTAEVVTDVSGRGVGMDVV 584 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 585 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 612 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 8e-18 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 4 TILAIDDSATMRTLLSATLGEAGYDVTVASDGEVGLDVALATRFDLVLTDHHMPRKNGLE 63 TIL DD A +RT+L+ L AGYDV + S+ A DLV+TD MP +N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LIVALRRQLGYEATPILVLTTENGDAFKDAARAAGATGWIEKPIDPDALIELVA 117 L+ +++ P+LV++ +N A GA ++ KP D LI ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.5 bits (92), Expect = 1e-05 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 182 FAMSSDAVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEKGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELIAGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISIIVLNRKSELAL 294 A + LI+ G+ K+ +G ++ N D + I + +R+ E+ + Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 26.8 bits (59), Expect = 0.035 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%) Query: 5 ATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRTQ--VAELLL 62 AT + A+A+F+ GGD+S +Q++ + +P L+V ++ RT+ + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDVSG---AMQDIDLIMDIPVKLTV----ELGRTRMTIKELLR 80 Query: 63 AALKSPLASGAQAKNFVQMLVDNHRIA 89 S +A A + +L++ + IA Sbjct: 81 LTQGSVVALDGLAGEPLDILINGYLIA 107
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 382 bits (982), Expect = e-133 Identities = 174/406 (42%), Positives = 266/406 (65%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG 60 M + ++A+DA G+ +G EADSAR AR LR +GL PL V+ Q+ + S L+L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY E+R ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYL 238 V+A +V+ LLS VVP+VV F KQ LP+ T V+M +SD VR + +L+ + A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L ++ R++F R LL PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRGNIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 ESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (480), Expect = 6e-65 Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 3/140 (2%) Query: 10 QAARRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRL 69 +A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 70 DNGRYPTQDQGLNALIQKPTTDPIPNNWKDGGYLERLPNDPWGNSYKYLNPGVHGEIDVF 129 DN YPT +QGL +L++ PT P+ N+ GY++RLP DPWGN Y +NPG HG D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 130 SYGADGKEGGESNDSDIGSW 149 S G DG+ G E DI +W Sbjct: 122 SAGPDGEMGTE---DDITNW 138
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 51.5 bits (123), Expect = 1e-10 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 51 RARGFTLLEMLVVLVIAGILVSVASLTLRRNPRTDLREEAQRIALLFETAGDEAQVRARP 110 R RGFTLLEM+++L++ G+ + L + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 111 IAWRATEHGFRF---------------DIRTGDGWRPLRDD 136 ++F D +G W PLR Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAG 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.001 Identities = 10/26 (38%), Positives = 18/26 (69%) Query: 8 RSPARSRGFTMIEVLVALAIIAVALA 33 R+ + RGFT++E++V + II V + Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 3e-04 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 33 RGFTLIEMMIAITILAVIA-ILSWRGLDQIIRGREKVAAAMEDERVFAQMFDQMRIDARR 91 RGFTL+E+M+ I I+ V+A ++ + + ++ A+ D D ++D Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK--AVSDIVALENALDMYKLDNHH 65 Query: 92 AATDDEAGQPAV 103 T ++ + V Sbjct: 66 YPTTNQGLESLV 77
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.2 bits (75), Expect = 0.003 Identities = 24/93 (25%), Positives = 31/93 (33%) Query: 81 PKAGQRSPAGATPLAPRAPLPSANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQ 140 P A + +P P+ P P P P P +A AP P +AAA AA Sbjct: 568 PPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVN 627 Query: 141 AAQAAQANAAALNADEAADLDLPSLTAHEAAAG 173 A+ A L L + A G Sbjct: 628 TGGVGLASTLWYAESNALSKRLGELRLNPDAGG 660
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 490 bits (1263), Expect = e-171 Identities = 204/576 (35%), Positives = 320/576 (55%), Gaps = 46/576 (7%) Query: 1 MDIKRTVLWVIFFMSAVMLFDNWQRSHGRPSMFFPNVTQTNTASNATNGNGASGASAAAA 60 MD +R +L + + M++ W++ Q T + T Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQ-----PQAQQTTQTTTT------------- 42 Query: 61 ANALPAAATGAAPATTAPAAQAQLVRFSTDVYNGEIDTRGGTLAKLTLTK---AGDGKQP 117 AA AA + Q +L+ TDV + I+TRGG + + L + QP Sbjct: 43 ------AAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQP 96 Query: 118 DLSVTLFDHTANHTYLARTGLLGGDFPN-----HNDVYAQVAGPTSLAADQNTLKLSFES 172 L + + Y A++GL G D P+ +Y LA QN L++ Sbjct: 97 ---FQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTY 153 Query: 173 PVKGGVKVVKTYTFTRGSYVIGVDTKIENVGAAPVTPSVYMELVRD-----NSSVETPMF 227 G KT+ RG Y + V+ ++N G P+ S + +L + + + F Sbjct: 154 TDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 228 S-HTFLGPAVYTDQKHFQKITFGDIDKNKADYVTSADNGWIAMVQHYFASAWIPQSGAKR 286 + HTF G A T + ++K F I N+ ++S GW+AM+Q YFA+AWIP + Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISS-KGGWVAMLQQYFATAWIPHNDGTN 272 Query: 287 DIYVEKIDPTLYRVGVKQPVAAIAPGQSADVSARLFAGPEEERMLEGIAPGLELVKDYGW 346 + Y + + +G K + PGQ+ +++ L+ GPE + + +AP L+L DYGW Sbjct: 273 NFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 347 VTIIAKPLFWLLEKIHGFVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKEITPRMQA 406 + I++PLF LL+ IH FVGNWG++I+++T +++ + +PL+ A Y SMA+M+ + P++QA Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 407 LRERFKSDPQKMNAALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLASVEMRGAPWV 466 +RER D Q+++ +M LYK EKVNP GGC P++IQ+P+F++LY++L+ SVE+R AP+ Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 467 LWIHDLSQRDPYFILPVLMAVSMFVQTKLNPTP-PDPVQAKMMMFMPIAFSVMFFFFPAG 525 LWIHDLS +DPY+ILP+LM V+MF K++PT DP+Q K+M FMP+ F+V F +FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 526 LVLYYVVNNVLSIAQQYYITRTL---GGAAAKKKAS 558 LVLYY+V+N+++I QQ I R L G + +KK S Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS 548
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.6 bits (84), Expect = 2e-04 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 191 IDFLEAADARGKLAHIR--ERLAHVLGDARQGALLREGLSV----VLAGQPNVGKSSLLN 244 + L K +R + + + ++ G VL G +GKS+L+N Sbjct: 555 VHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614 Query: 245 ALAGAELAIVTPI-AGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 L G + T GT +D Q I L + R + E K + Sbjct: 615 TLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT--AFRRADAEAVKAFFSSRKDRY 672 Query: 304 ERA 306 A Sbjct: 673 RGA 675
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 84.9 bits (209), Expect = 9e-20 Identities = 70/209 (33%), Positives = 95/209 (45%), Gaps = 7/209 (3%) Query: 471 ANAAPPDASG-ALAALQDAADSARATLAASSAPAALQQAA-PAALAANASAAAAPAAPSL 528 A P DA G L A++ S P+ + AA P AAP L Sbjct: 172 TTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVL 231 Query: 529 APPVGTPDWTDALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHA 588 + P+G+ +W +LSQ + + QQSAEL L+P DLG +Q+ L+V DN A VS H Sbjct: 232 SAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQ 291 Query: 589 QVRDAVEAALPKLREAMEAGGLGLGSASVSDGGFASAQQQQTPQRQSSDGSATRRAFGAS 648 VR A+EAALP LR + G+ LG +++S F+ QQ + Q+QS +A Sbjct: 292 HVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQR-TANHEPLAGE 350 Query: 649 TADAALDELAAASSGGAARRAVGMVDTFA 677 D L S VD FA Sbjct: 351 DDDT----LPVPVSLQGRVTGNSGVDIFA 375
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 59.8 bits (144), Expect = 2e-14 Identities = 43/140 (30%), Positives = 74/140 (52%) Query: 1 MAQSFPLQLLLERAQDDLDTAAKQLGRAQRERTDAQAQLDALMRYRDEYRVRFAESAQSG 60 MA+ L L + A+ +++ AA+ LG +R A+ QL L+ Y++EYR +G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFLDTLDAAIEQQRRVLAAAQTRIDAARPEWQAKKRTLGSYEILQARGAR 120 + + W N+Q F+ TL+ AI Q R+ L ++D A W+ KK+ L +++ LQ R + Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QDAQRAAKREQRDADEHAAK 140 + +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 109 bits (274), Expect = 8e-32 Identities = 65/184 (35%), Positives = 107/184 (58%), Gaps = 4/184 (2%) Query: 37 AAAALAAELQRVRDAAHAEGLAAGHVEGQALGYQAGYEQGRAKGFDEGRAEAHTHAAQLA 96 A +L +L +++ AH +G AG EG+ G++ GY++G A+G ++G AEA + A + Sbjct: 36 AEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIH 95 Query: 97 A----LAASFRDALAGVERDLADDIATLALEIAQQVVRQHVQHDPAALIAAAREVLAAEP 152 A L + F+ L ++ +A + +ALE A+QV+ Q D +ALI +++L EP Sbjct: 96 ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEP 155 Query: 153 ALAGAPHLIVNPADLPVVEAYLKDELDTLGWSVRTDTSIERGGCRAHASTGEIDATLATR 212 +G P L V+P DL V+ L L GW +R D ++ GGC+ A G++DA++ATR Sbjct: 156 LFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATR 215 Query: 213 WERV 216 W+ + Sbjct: 216 WQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 298 bits (765), Expect = e-102 Identities = 114/324 (35%), Positives = 191/324 (58%) Query: 5 GLNKSALLLMSIGEEEAAQVFKFLAPREVQKIGAAMAALKNVTREQVEDVLNDFVQEAEK 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E ++VL +F + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRTVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSAAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D A + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPTALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRAPMGGIRTAAEILNFMTSVHEEAVIENVKQYDPDLAQKIIDQMFVFENLLDLEDR 244 + GG+ EI+N E+ +IE++++ DP+LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQLLLKEVESEALIIALKGAPPALRQKFLSNMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ +L+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RKILQVVRNLAESGQIVIGGKAED 328 +KI+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 468 bits (1206), Expect = e-162 Identities = 254/562 (45%), Positives = 360/562 (64%), Gaps = 37/562 (6%) Query: 53 LSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 112 L+R++ NPR+P ++ + A+A +VA+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 113 YKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 172 Y+FA+ GAI VPA++VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 173 EGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTR 232 EGEL RT+E++ V++ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ AV Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 233 MVSSSVPDMPAKNVTIVDQDGNLLTQT-ASATGLDASQLKYVQQIERNTQKRIDAILAPI 291 +VSS+V +P NVT+VDQ G+LLTQ+ S L+ +QLK+ +E Q+RI+AIL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 292 FGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGAL 351 G GN +QV+A +DF+ EQT E Y PNG ++ +RS+Q + S ++ GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 352 SNTPPQPASAPIVA-------------SNGQPAGPAATPVSDRKDSTTNYELDKTVRHVE 398 SN P P API ++ +A P S +++ T+NYE+D+T+RH + Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 399 QSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNV 458 ++G I+RLSVAVVVNY+ D K PL AD++ Q++ L ++AMG+ +KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 459 VNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFP 515 VNS FSA + LP+W+Q I+ +WL V A L+ VRP L R Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 516 PPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENERNRYERNLDYA 575 E A + + L+ D + N+R E Sbjct: 492 AAQEQAQVRQETEEAVEVRLSKDEQLQQRR----------------ANQRLGAEVMSQRI 535 Query: 576 RTIARQDPKIVATVVKNWVSDE 597 R ++ DP++VA V++ W+S++ Sbjct: 536 REMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 74.7 bits (183), Expect = 4e-20 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 65 APVNGIASALQQMQAMAAQAAGGASPATSLAGSGAASAGSFASAMKASLDKISGDQQKAL 124 + + GI + Q+QA A +A SFA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATA-MSARAQESLPQ-------PTISFAGQLHAALDRISDTQTAAR 52 Query: 125 GEAHAFEIGAQNVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNEIMQMSV 175 +A F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY E+M M V Sbjct: 53 TQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 62.5 bits (152), Expect = 4e-15 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 10 AVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIP 68 A+ +G P V K + + + A + G+ + + +L +D IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 69 PQLYQAVAELLAWLYALERDA 89 + +A AE+L WL + Sbjct: 328 AEQIEATAEVLRWLERQNIEK 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-21 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 5 ILLVDDHAIVRQGIRQLLIDRGIAREVKEAECGGDALVIAEKSEFDVILLDISLPDMNGI 64 IL+ DD A +R + Q L G +V+ + D+++ D+ +PD N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 EVLKRLKRRLPSTPVLMFSMYREDQFAVRALKAGAAGYLSKTVNAAQMVSAISQ 118 ++L R+K+ P PVL+ S A++A + GA YL K + +++ I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.010 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%) Query: 99 SVSAEMHAGFPALRSEMPLNVRESHPGRGATPAALADVARIDELWRTCVAASGGPFLFGA 158 +V+A + GFPAL + + S GA AA+AD+ +AA GPF FG Sbjct: 83 AVAAPVAFGFPALSTPGAGGLAVSISA-GALSAAIADI----------MAALKGPFKFGL 131 Query: 159 FSIA 162 + +A Sbjct: 132 WGVA 135
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.029 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.2 bits (78), Expect = 0.001 Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 356 ISAPGSTNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 SA L S V+L + L Q+ Y ANAQ ++T + LIN+ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 30.3 bits (68), Expect = 0.017 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGST 36 +SGL A + L+ NNI++ N G+ T Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.018 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGATQSLEQQSVVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 1e-06 Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 213 TLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQM 260 L S VN+ +E N+ + Q+ Y N++ + T++ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 40.3 bits (94), Expect = 5e-06 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ RQ + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT--------------RQTTIMAQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 205 bits (523), Expect = 9e-69 Identities = 128/222 (57%), Positives = 156/222 (70%), Gaps = 7/222 (3%) Query: 25 AALAAAALALAGCAQIPREPITQQPMSAMPPMPPAMQAPGSIY---NPGYAG-RPLFEDQ 80 A + L+L GCA IP P+ Q SA P P A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 81 RPRNVGDILTIVIAENINATKSSGANTNRQGNTSFDVPTAG-FLGGLF--NKANLSAQGA 137 RPRN+GD LTIV+ EN++A+KSS AN +R G T+F T +L GLF +A++ A G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 138 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGIVNPNTI 197 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSG+VNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 198 SGQNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAP 239 SG N+V STQVADARIEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 371 bits (954), Expect = e-129 Identities = 164/392 (41%), Positives = 225/392 (57%), Gaps = 27/392 (6%) Query: 7 RVVRPLVAARRRAAACCALAACMLALAFAPAAARAERLKDLAQIQGVRDNPLIGYGLVVG 66 RV+R + AA +A L+ PA A R+KD+A +Q RDN LIGYGLVVG Sbjct: 2 RVLRIIAAALVFSALPF--------LSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVG 53 Query: 67 LDGTGDQTMQTPFTTQTLANMLANLGISINNGSANGGGSSAMTNMQLKNVAAVMVTATLP 126 L GTGD +PFT Q++ ML NLGI+ G +N KN+AAVMVTA LP Sbjct: 54 LQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQSN-----------AKNIAAVMVTANLP 102 Query: 127 PFARPGEAIDVTVSSLGNAKSLRGGTLLLTPLKGADGQVYALAQGNMAVGGAGASANGSR 186 PFA PG +DVTVSSLG+A SLRGG L++T L GADGQ+YA+AQG + V G A + + Sbjct: 103 PFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAAT 162 Query: 187 VQVNQLAAGRIAGGAIVERSVPNAVAQMNGVLQLQLNDMDYGTAQRIVSAVNS----SFG 242 + + R+ GAI+ER +P+ L LQL + D+ TA R+ VN+ +G Sbjct: 163 LTQGVTTSARVPNGAIIERELPSKFKDSV-NLVLQLRNPDFSTAVRVADVVNAFARARYG 221 Query: 243 AGTATALDGRTIQLTAPADSAQQVAFMARLQNLEVSPERAAAKVILNARTGSIVMNQMVT 302 A D + I + P + MA ++NL V + AKV++N RTG+IV+ V Sbjct: 222 DPIAEPRDSQEIAVQKPRVA-DLTRLMAEIENLTVETD-TPAKVVINERTGTIVIGADVR 279 Query: 303 LQNCAVAHGNLSVVVNTQPVVSQPGPFSNGQTVVAQQSQIQLKQDNGSLRMVTAGANLAD 362 + AV++G L+V V P V QP PFS GQT V Q+ I Q+ + + G +L Sbjct: 280 ISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSKV-AIVEGPDLRT 338 Query: 363 VVKALNSLGATPADLMSILQAMKAAGALRADL 394 +V LNS+G +++ILQ +K+AGAL+A+L Sbjct: 339 LVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 227 bits (579), Expect = 3e-75 Identities = 124/297 (41%), Positives = 173/297 (58%), Gaps = 15/297 (5%) Query: 15 ALDVQGFDALRSKATAAAPREGVKMVAGQFDAMFTQMMLKSMRDATPSDGLLDSSSSKMY 74 A D Q + L++KA P ++ VA Q + MF QMMLKSMRDA P DGL S +++Y Sbjct: 12 AWDAQSLNELKAKA-GEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLY 70 Query: 75 TSMLDQQLAQQMSS-KGIGVADALTKQLLRNANVAPDAQGEGGLAAMNALAKAYANSNGA 133 TSM DQQ+AQQM++ KG+G+A+ + KQ+ + ++ + Y N + Sbjct: 71 TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALS 130 Query: 134 PGNGALAGTRGYSAASALTPPLKGNGNSAQADAFVEKMALAAQAASATTGIPARFIVGQA 193 P + + AF+ +++L AQ AS +G+P I+ QA Sbjct: 131 ------------QLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQA 178 Query: 194 ALESGWGKREIRGANGESSYNVFGIKATKGWTGRTVSAVTTEYVNGKPHRVVAQFRAYDS 253 ALESGWG+R+IR NGE SYN+FG+KA+ W G TTEY NG+ +V A+FR Y S Sbjct: 179 ALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSS 238 Query: 254 YEHAMTDYANLLKNNPRYASVLNAGHNAEGFAHGMQKAGYATDPHYAKKLISIMQQI 310 Y A++DY LL NPRYA+V A +AE A +Q AGYATDPHYA+KL +++QQ+ Sbjct: 239 YLEALSDYVGLLTRNPRYAAVTTAA-SAEQGAQALQDAGYATDPHYARKLTNMIQQM 294
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 230 bits (589), Expect = 9e-70 Identities = 163/444 (36%), Positives = 254/444 (57%), Gaps = 12/444 (2%) Query: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTAGIATAITNYFTGLQTVA 122 V+R+Y+ +++NQL AAQTQ S L+ Y +++++N + + T+ +AT + ++FT LQT+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQLNE 182 +NA DP+ARQ + ++ L +Q Q + VN + +V QIN+Y QIA LN+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--SASSQGQPPNQLLDQRDLAVSKLSQLAGVQV-VQSNGNYSVFLSGGQPLVVGNAS 239 QI+ + G PN LLDQRD VS+L+Q+ GV+V VQ G Y++ ++ G LV G+ + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVASPSDPSELTI-VSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQ 298 QLA V S +DPS T+ G AG+ + +P+ L G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIE------IPEKLLNTGSLGGILTFRSQDLDQTR 294 Query: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGT 358 LG LA++FA N Q+ G D +G+ G FA+G PAV N N G + + D + Sbjct: 295 NTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 359 QPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTV 418 +DY +S+D ++ +T R + T TP + + GL+L+ + TP DSFT+ Sbjct: 355 AVLATDYKISFDNNQWQVT-RLASNTTFTVTPDAN-GKVAFDGLELTFTGTPAVNDSFTL 412 Query: 419 LPTRGALDGFSLAIANGSAIAAAS 442 P A+ + I + + IA AS Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 83.1 bits (205), Expect = 9e-19 Identities = 46/105 (43%), Positives = 66/105 (62%) Query: 561 GTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQIT 620 G +D RN AL L ++ G + AYA V+ IGN + LK SSA Q +V Q++ Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500 Query: 621 QAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSVFQTVLGL 665 QQS+SGVN +EE NL ++QQ Y ANA+V+QTAN++F ++ + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.005 Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 243 GMGARVGGPFIGGRGGRGGGNDGFRGGGGGFGGGGAS 279 G G+ G + GG G GG +G GGG G GG ++ Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.5 bits (126), Expect = 2e-09 Identities = 35/160 (21%), Positives = 52/160 (32%), Gaps = 32/160 (20%) Query: 216 LDRTGRAQTHIVLASPETGVVSELNVR-DGAMVTPGQTLAKIAGLS-TLWAVIDVPEALA 273 L + Q V+ +P + V +L V +G +VT +TL I TL V Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 274 SGVRPGMRVDATFEGDPQRR---VSGAIREILPGV----------NATTRTLQARLELDN 320 + G E P R + G ++ I N + L N Sbjct: 378 GFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGN 437 Query: 321 RALALTPGMLMRARVGASHAASRLVVPSDAVIATGKRSVV 360 + + L+ GM A I TG RSV+ Sbjct: 438 KNIPLSSGM-----------------AVTAEIKTGMRSVI 460 Score = 35.2 bits (81), Expect = 5e-04 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%) Query: 211 SVIANLDRTGRAQTHIV-------LASPETGVVSELNVRDGAMVTPGQTLAKIAGLST 261 SV+ ++ A + + E +V E+ V++G V G L K+ L Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGA 132
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 665 bits (1717), Expect = 0.0 Identities = 219/1055 (20%), Positives = 436/1055 (41%), Gaps = 48/1055 (4%) Query: 7 RWSIRNRLLVLLATALVAAWGVVSLNRTPLDALPDLSDTQVIVKASYPGKAPRVVEDQVT 66 + IR + + ++ G +++ + P+ P ++ V V A+YPG + V+D VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 67 YPLTTTLLGVPGAKTIRAYS-SFGDAFVYVLFDDRTDQYWARSRVLEYLNQVQGRLPQGA 125 + + G+ + + S S G + + F TD A+ +V L LPQ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 126 -SVALGPDATGVGWVYEYALVDRSGRRDLGELRALNDWFLKFELKAVPDVAEVASVGGMV 184 + + + ++ V + ++ +K L + V +V G Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ- 181 Query: 185 RQYQVVLDPDRLRAFGITQAAVADALGKANSESGG------SVVEMAESEYMVRASGYLR 238 ++ LD D L + +T V + L N + + + + A + Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 239 SLDDFRNVVLRTSESGTPVLLGDVARVQIGPEMRRGIAELNGEGEVAGGVIVMRSGKNAL 298 + ++F V LR + G+ V L DVARV++G E IA +NG+ AG I + +G NAL Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANAL 300 Query: 299 STIEAVKAKLAELRRSLPAGVELVTTYDRSQLIGRAVDNLKDKLIEEFVVVGLVCALFLF 358 T +A+KAKLAEL+ P G++++ YD + + ++ + L E ++V LV LFL Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 359 HLRSAFVAILSLPLGVLAAFIVMRHQGVNANLMSLGGIAIAIGAMIDAAVVMIENAHKHL 418 ++R+ + +++P+ +L F ++ G + N +++ G+ +AIG ++D A+V++EN + + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 419 ESHEHAHPGAPLSSAARWELIAASAAEVGPALFFSLLIVTLSFVPVFALEGQEGKLFAPL 478 + E S +++ AL ++++ F+P+ G G ++ Sbjct: 421 MEDK----------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 479 AFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPREASNP------LNRL---LVRLYRPLL 529 + T +A + +++ L P L L++ N N V Y + Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSV 530 Query: 530 EATLARPWRAIAIAAAALVLTAIPMSRLGGEFMPPLDEGDLLYMPTALPGISAQKAAELL 589 L R + I A + + RL F+P D+G L M G + ++ ++L Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 590 QQTDRLIKT--VPEVATVFGKSGRADTATDPAPLEMFETTIRFRPRGEW-RPGMTPGRLV 646 Q V +VF +G + + +P E + ++ Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGF---SFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 647 DELDRVVKVPGLSNVWVPPIRNRLDMLSTGIKTPVGVKIAGPELAQIDRIAAQVEAAVKR 706 + V + +++ + + AG + + Q+ + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 707 VPG-VTSALAERLNGGRYVDVDIDRRAAARYGLSVGDVQAVVASAIGGENVGEVIAGRER 765 P + S L +++D+ A G+S+ D+ +++A+GG V + I Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 766 FPINIRYPREVRDSLEKLRALPIVTERGAQILLRDVAAVTIADGPPMIRSENARLSGYVY 825 + ++ + R E + L + + G + G P + N S + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQ 827 Query: 826 VDIR-GVDLKTAVGAMQRAVAQQVALPPGYSIAWSGQFEYLERAAATLRTVIPVTLAVIF 884 + G A+ M+ ++ LP G W+G + ++ ++ V+F Sbjct: 828 GEAAPGTSSGDAMALMENLASK---LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 885 VLLFLTFDSAADALLLMTTVPFALVGGLWFVWALGHAVSVATAVGFIALAGVAAEFGVVM 944 + L ++S + + +M VP +VG L V VG + G++A+ +++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 945 LLYLKRAYERRIAAGEPPNEATLADAIREGAVLRVRPKAMTVAVVLAGLVPIMIGHGSGS 1004 + + K E+ G+ EATL +R+RP MT + G++P+ I +G+GS Sbjct: 945 VEFAKDLMEKE---GKGVVEATL-----MAVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 1005 EVMQRIAAPMVGGMVTAPLLSMFVIPAAWLLLQRR 1039 + ++GGMV+A LL++F +P +++++R Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.043 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 8/136 (5%) Query: 2 GTTIRDVAQAANVSIGTVSRALKNQPGLSEATRARIVE-----IAHRMNYDPTQLRPRIK 56 T++ ++A+AA V+ G + K++ L P ++ Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLR 90 Query: 57 -RLTFLLHRQHNNFATTPFFSHVLHGVEDACRERGIVPSLLTTGPTDDVIRQMRPHAPDA 115 L +L + H E E +V + ++ Sbjct: 91 EILIHVLESTVTEERRRLLMEIIFHKCEFV-GEMAVVQQAQRNLCL-ESYDRIEQTLKHC 148 Query: 116 IAVAGFMEPETLEALA 131 I A Sbjct: 149 IEAKMLPADLMTRRAA 164
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.002 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 68 PALETAPLNAPGAAPAAASDSAPGSPAASAPASAVAPASMPASVAAPAAPA----PSSPP 123 A E A L A A+ + D+ PG+ A A + P AP PS+ Sbjct: 451 QAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGE 510 Query: 124 AAQP----ARAPILPGASAA 139 A P A ++ A A Sbjct: 511 TANPFFTAAALTVMATAGVA 530
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.028 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 198 AAAEVDALRARDATLAGGLP----PVALAAVRAGATLTDTFAAALNALA 242 A+ V +R D L GG+ +A G TLT T A LNAL Sbjct: 74 ASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALT 122
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 68.4 bits (167), Expect = 1e-14 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 399 QADGGAAANAASGAAAQTQAQAPALPAAIYFETGKSELPADAKDAIAAAAEYVKAH--PD 456 Q + A A + Q + L + + F K+ L + + A+ + D Sbjct: 193 QGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKD 252 Query: 457 AKLALSGFTDKTGSADANAELAKRRAQVVRDALKTAGVAEDRI 499 + + G+TD+ GS N L++RRAQ V D L + G+ D+I Sbjct: 253 GSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKI 295
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 31.8 bits (72), Expect = 0.003 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 163 YGEFFATGILIMAFMSIGVVSTA-TTIATLRERNTFKMYVCFPVSRF-VFLASLIVSRVI 220 Y F A G++ + M+ T + + T++ + + + L + + Sbjct: 65 YTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATK 124 Query: 221 LMLAASVTLMLAARYLFQVPLPLWSLRALRAIPVVLLGAAMLLSLGTLLASRARSLAAAE 280 LA + ++AA + SL L A+PV+ L SLG ++ + A S Sbjct: 125 AALAGAGIGVVAAALGY---TQWLSL--LYALPVIALTGLAFASLGMVVTALAPSYDYFI 179 Query: 281 AWCNLIYFPLLFFSDLTIPLRAAPHWLRVVLLVLP 315 + L+ P+LF S P+ P + LP Sbjct: 180 FYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLP 214
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 511 bits (1318), Expect = e-174 Identities = 194/567 (34%), Positives = 311/567 (54%), Gaps = 7/567 (1%) Query: 313 PNTLAGVCAAPGIAVGTLVRWDDAQIVPPELASGTPAAESRLLDRALAEVDAQLETTVRE 372 + + G+ A+ G+A+ + + + + + E L AL + +L + Sbjct: 2 HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 373 ASRRGAIGEAGIFAVHRVLLEDPALVDAARDLI-SLGKSAGYAWRETIRAQTAVLADVDD 431 +A IFA H ++L+DP LVD + I + +A YA +E ++ +D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 432 TLLAERAADLRDIDKRVLRAL-GYASASARELPAEAVLAAEEFTPSDLASLDRERVAALV 490 + ERAAD+RD+ KRVL L G + S + E V+ AE+ TPSD A L+++ V Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 491 MARGGATSHAAIIARQLGIPALVAVGDALYAIAQRTQVVVDASAGRLEYAPSALDVERAH 550 GG TSH+AI++R L IPA+V + I V+VD G + P+ +V+ Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 551 HERQRLAGVREANRRMSGEAALTRDGHRIEVAANIATLDDARVALDNGADAVGLLRTELM 610 +R ++ ++ GE + T+DG +E+AANI T D L NG + +GL RTE + Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 611 FIHRQAAPTASEHQQSYQSIVDALQGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGI 670 ++ R PT E ++Y+ +V + G+ +IRTLD+G DKE+ YL LP E NP LG R I Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 671 RLAQVRPDLLDDQLRGLLAVKPYGSVRILLPMVTDVGELVRIRKRIDD-----FARAMGR 725 RL + D+ QLR LL YG+++++ PM+ + EL + + + + + + Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 726 AQAVEVGVMIEVPSAALLADQLAQHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPA 785 + ++EVG+M+E+PS A+ A+ A+ DF SIGTNDL QYT+A DR ++ HPA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 786 VLRLVDATVRGAEKHGKWVGVCGALGGDPVAVPVLAGLGVTELSVDPVSVPGIKAQVRRL 845 +LRLVD ++ A GKWVG+CG + GD VA+P+L GLG+ E S+ S+ ++Q+ +L Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 846 DYQLCRQRAQDLLALESAQAVRAASRE 872 + + AQ L L++A+ V ++ Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKK 568
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.022 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 199 VVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPP--AAAQPVANRALPSVKRQR 256 V + G P+ + DD + + V +LPAD SP ++ P A V R + VK +R Sbjct: 134 VALYGVLPSQIAKDDPNMMSKIVTSLPADDITESPVSSLPLDKATVNVNVRVVDDVKDER 193 Query: 257 ALPGALDLRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGG 316 + GV +++P + A ER G PV + PA + G Sbjct: 194 QNISVVS--GVPMSVPVVD----AKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPG 247
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 34.0 bits (78), Expect = 9e-05 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 44 KRETKQQFIDAITAGRRRYRQIEIQSQDVL-PVGDATYVVAG 84 KRE K+ +RR EIQS+++ V ++ VVA Sbjct: 222 KREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAN 263
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 93.7 bits (233), Expect = 6e-23 Identities = 77/368 (20%), Positives = 143/368 (38%), Gaps = 31/368 (8%) Query: 112 RATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVL-VGIALGAYGVTQSLLYIFYG 170 R + + AL +G+ +IMPV + + +V GI L Y + Q G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 171 WASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 229 SD+FGR+PV+ L A+ + A A + + +GR++ G+ GA + A+IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 230 SEHNRTKAMAMVGGSIGMSFAVAIVGAPI--VFHWVGMSGLFAIVGALSVAAIGVVLWVV 287 R + + G + G + + F AL+ +++ Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 288 PDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVA----- 342 P++ + P E L+ + R G+ V+ A F+ + + G +P A Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIF 236 Query: 343 ----SHWQ-----VYLPVMGL--AFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLG 391 HW + L G+ + + VA + G + ++L G+ A G +LL Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLA 295 Query: 392 VATHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGV 451 AT + + V I + +++S+ R+G G S+ +G + Sbjct: 296 FATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 452 VGGVLLKH 459 + + Sbjct: 354 LFTAIYAA 361
>cloacin#Cloacin signature. Length = 551 Score = 43.9 bits (103), Expect = 1e-07 Identities = 28/74 (37%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 109 GGRGGSGGGGGGGDDGGYG------GGGGGYGGGRDMERGGGGGRASGGGGAGARSGGGG 162 GG G G GGG D G+ GGG G G GG G GG G G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH---WGGGSGHGNGGGNGNSGGGSGTG 78 Query: 163 GGASRPSAPAGGGF 176 G S +AP GF Sbjct: 79 GNLSAVAAPVAFGF 92 Score = 35.8 bits (82), Expect = 6e-05 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGGYGGGRDMER---GGGGGRASGGGGAGARSGGGGGGA 165 G + G GG G GGG G G E GGG G GG GGG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 166 SRPSAPAGGG 175 S + GG Sbjct: 71 SGGGSGTGGN 80 Score = 30.5 bits (68), Expect = 0.004 Identities = 23/56 (41%), Positives = 23/56 (41%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGGYGGGRDMERGGGGGRASGGGGAGARSGGGGGG 164 GG GSG GGG G GGG G GGG A G A S G GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 29.7 bits (66), Expect = 0.007 Identities = 17/53 (32%), Positives = 18/53 (33%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGGYGGGRDMERGGGGGRASGGGGAGARSGGG 161 GG G GGG G GG G GG + G G GG G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 60.1 bits (145), Expect = 7e-11 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 41/208 (19%) Query: 12 LNLPSGGGSVSGDGGDFSVDLNTGTATLKFDLTVPAGPNGITPPHTLQYSAGAGDGAFGI 71 LP GG ++S G D G A++ L + A G P L YS+G G+G FG+ Sbjct: 18 PFLPKGGKALSQSGPD-------GLASITLPLPISAE-RGFAPALALHYSSGGGNGPFGV 69 Query: 72 GWSLGLMTIRRR-----------------------ITPATGAAEPAPPGACSLVGVGELV 108 GWS M+I R T +TG A P P + V Sbjct: 70 GWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDA-PNPVTCFAYGDVSFPQ 128 Query: 109 DMGARRFRPIVDATGLLIEFTGAS------WTATDKTDTQYTLGTSANARIG---GGALP 159 R++P +++ +E+ + W D + LG +A AR+ + Sbjct: 129 SYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHT 188 Query: 160 AAWLVDRCADSAGNAIAYTWLDVGGARV 187 A WLV+ AG I Y++L G V Sbjct: 189 AQWLVEESVTPAGEHIYYSYLAENGDNV 216
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.7 bits (79), Expect = 0.002 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 13/196 (6%) Query: 518 VSQASGQINAAQQQLAVAQAQAQAYQAGVALAQTRATNAAKNAQ-EYGSLNSQVIVIQAT 576 +S+ + + AQ++L+ AQ++ + +R +++ E +L + + Sbjct: 184 LSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQA 243 Query: 577 GQQVSGGDDGDYNGVSAMANQYLSGQ-RISGDSATVAAATNLAANRL---SQQFQIDSMN 632 + D+ +S AN L + V A + + + +I+ +N Sbjct: 244 SAKYKELDE-LVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRIN 302 Query: 633 RTTAEMQQALAQAQAQLAAANAQVSAAGANLAVAQLNAQAAAQTLGVFDADTFTPQVWKA 692 ++Q+A++Q A A+V A NL AQ N + DA T ++ Sbjct: 303 ADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIK----DAVDATVSFYQT 358 Query: 693 MGNFVDQIYERYMNMA 708 + ++ E+Y MA Sbjct: 359 LT---EKYGEKYSKMA 371
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.9 bits (77), Expect = 0.004 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 149 QVLDGLAHAHANGVVHRDLKPQNVMVTTRDGEPCAKILDFGI 190 ++LD H GVVH D+KP NV+ GEP ++D G+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPV--VIDLGL 292
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 9e-11 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 484 RALVVDDNENARETLGAMLATLGIRVDLRGTGKEGLRCFGECQHDIVVLDLELPDISGFE 543 LV DD+ R L L+ G V + R D+VV D+ +PD + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 544 VAEQIRWATSSDAARKTTILGVSAYES------ALLKGDHAIFDAFIPKPIHLDTLGGIV 597 + +I+ A +L +SA + A KG +D ++PKP L L GI+ Sbjct: 65 LLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKG---AYD-YLPKPFDLTELIGII 115 Query: 598 SR 599 R Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 5e-05 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 159 ARIAVVDDSPDVAETICEYFAEKGVAAIAYYDSVSFRKALEVEDFDGYILDWLLGEETAA 218 A I V DD + + + + G ++ + + + D D + D ++ +E A Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 219 PLVRGIRASENADAPIFLLTGKISTGEASEDEIADIVSSFNARCEE---KPVRLPILFAE 275 L+ I+ D P+ +++ ++ + + + KP L L Sbjct: 64 DLLPRIK-KARPDLPVLVMSA--------QNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 276 VARAL 280 + RAL Sbjct: 115 IGRAL 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 8e-04 Identities = 47/264 (17%), Positives = 93/264 (35%), Gaps = 28/264 (10%) Query: 77 AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALG 136 A V G L D GR+ L+++ + ++ P V++I R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110 Query: 137 GEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRV 196 A Y+A+ R + ++ G+ + G +G G + Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGM------VAG--PVLGGLM-GGFSPHA 161 Query: 197 PFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLT 256 PF A+ L ++ L + + + PL + + L Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216 Query: 257 AGQAVVWYTGQFYA---LFFLTQTLKVDGASANILIALALLIGTPF-FVFFGSLSDRIGR 312 A ++ GQ A + F D + I +A ++ + + G ++ R+G Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 313 KPIILAGCLIAALTYFPLFKALTH 336 + ++ G +IA T + L T Sbjct: 277 RRALMLG-MIADGTGYILLAFATR 299 Score = 34.8 bits (80), Expect = 8e-04 Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 287 ILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYF 328 IL+AL L+ G+LSDR GR+P++L AA+ Y Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88
>PF06580#Sensor histidine kinase Length = 349 Score = 50.2 bits (120), Expect = 2e-08 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 53/229 (23%) Query: 599 LAGLRTQAEF-ALRHEVNA-------DVARSLEQIATSSEQAARLVTQLLALARAENRAT 650 +A + +A+ AL+ ++N + R+L I +A ++T L L R Sbjct: 154 MASMAQEAQLMALKAQINPHFMFNALNNIRAL--ILEDPTKAREMLTSLSELMRY----- 206 Query: 651 GLTFEPVEIASLARQ--AVRDWV---QAALAKQMDLGYEGPDTDAPLRIDGQPVMLREML 705 L + SLA + V ++ ++ + +++ P ML + Sbjct: 207 SLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV---PPML---V 260 Query: 706 GNLIDNAIRY----TPAGGRITVRVHAERAAGAVHLEVEDTGPGIPPNERERVVERFYRI 761 L++N I++ P GG+I ++ + G V LEVE+TG N +E Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLK--GTKDNGTVTLEVENTGSLALKNTKE--------- 309 Query: 762 LGREGDGSGLGLAIVRE-IVAQHGGTLTIDDNVYQTSPRLAGTLVRVSI 809 +G GL VRE + +G I S + V I Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIK-----LSEKQGKVNAMVLI 347
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.017 Identities = 14/35 (40%), Positives = 17/35 (48%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEEISGGELLIDGAK 66 VV G G GKSTL+ + GL+ S I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>PF06776#Invasion associated locus B Length = 214 Score = 29.5 bits (66), Expect = 0.026 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 76 APARESPSENSMKTGRRHFVRSVASASAALAAAAWSPARAAIDAPASPATALSLMPGRWS 135 PA SP + + RR R+ A LA A A A+ + G W Sbjct: 30 GPAELSPM---LASCRRLARRN--GARLMLAGAMAIALSFGWSDRADAQGAVRSVHGDWQ 84
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.018 Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 57 REDALFRFASVSKPIVSAAAMRAVAAGKLDLDASI 91 R D F S K ++ A + V AG L+ I Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.6 bits (82), Expect = 3e-04 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 5/155 (3%) Query: 26 LLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAMPLVAATRG 85 L+ L F +++ E + LP + D A + T + + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 86 MRRRPLLLAALAGFVVANTATAASPYYAPVLV-ARCVAGVSAGLLWALLAGYASRMVDAR 144 + + LLL + + + +L+ AR + G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 145 QRGRAIAIAMLGAPVAMSVGI-PL-GTALGAALGW 177 RG+A ++G+ VAM G+ P G + + W Sbjct: 136 NRGKAFG--LIGSIVAMGEGVGPAIGGMIAHYIHW 168
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (341), Expect = 3e-37 Identities = 92/408 (22%), Positives = 171/408 (41%), Gaps = 15/408 (3%) Query: 1 MMLWLVATGFFMQTLDATIVNTALPSMAASLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 60 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 61 DTLGTRRVFFSAILIFTLGSLLCANAHT-LPLLVAFRVIQGVGGAMLLPVGRLAVLRTFP 119 D LG +R+ I+I GS++ H+ LL+ R IQG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 120 AERYLPALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGIAGCIATFYSMPDS 179 E A + +G +GP +GG + HW +L+ +P+ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 180 RNPAAGRFDLKGYLLLTIGMIAISLSLDGLADLGMQHAMVLVLLILSLACFVAYGLYAVR 239 G FD+KG +L+++G++ L L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 240 APQPIFSLELFGIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYGAFEAG-LMMLPV 298 P L F +G+L ++P +++ E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 299 AAAGMFSKRIITVLITRHGYRKVLLANTIMVGLMMASFALVSDAMPTWLKIAQLALFGGF 358 + + I +L+ R G VL + + + + + + ++ I + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 359 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 406 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>cloacin#Cloacin signature. Length = 551 Score = 46.2 bits (109), Expect = 3e-07 Identities = 42/113 (37%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 355 GASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGG 414 G G G + G S G GG +G G GG + GSG S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 415 GASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTS 467 G GG + GG SG G G ++ P G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 45.5 bits (107), Expect = 6e-07 Identities = 34/82 (41%), Positives = 38/82 (46%) Query: 420 GASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGG 479 G G G + G S G GGP+G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 480 GTSSGAGHGGHGGGTGGGGGNS 501 G G G+ G G GTGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 45.5 bits (107), Expect = 6e-07 Identities = 39/109 (35%), Positives = 45/109 (41%) Query: 389 SGASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSG 448 SG G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 449 GGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGG 497 G GG + GG SG G + + G S G GG G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 45.1 bits (106), Expect = 7e-07 Identities = 38/102 (37%), Positives = 46/102 (45%) Query: 210 GASGGGASGGSASGGGTSGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGG 269 G G G + G+ S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 270 GTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGA 311 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 44.7 bits (105), Expect = 9e-07 Identities = 39/102 (38%), Positives = 46/102 (45%) Query: 310 GASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGG 369 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 370 GTSGGGASGGGASGGGASGSGASGSGASGGGASGGGASGGGA 411 G GG + GG SG G + S + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.9 bits (103), Expect = 1e-06 Identities = 38/102 (37%), Positives = 45/102 (44%) Query: 305 GASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGG 364 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 365 GTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGA 406 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.9 bits (103), Expect = 2e-06 Identities = 41/117 (35%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 190 GTSGRGAAGGGASSGGASGGGASGGGASGGSASGGGTSGGGASGGGASGGGTSGGGASGG 249 G GRG G S+ G GG +G G GG++ G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 250 GTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGA 306 G GG + GG SG G G ++ G G G S G+ S A Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 43.5 bits (102), Expect = 2e-06 Identities = 38/102 (37%), Positives = 46/102 (45%) Query: 260 GASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGG 319 G G G + G S G GG +G G GG + G G S + GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 320 GTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGA 361 G GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 43.5 bits (102), Expect = 2e-06 Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 290 GASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGG 349 G G G + G+ S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 350 GASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGA 406 G GG + GG SG G G ++ G G+G S G S A Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 43.2 bits (101), Expect = 3e-06 Identities = 37/100 (37%), Positives = 44/100 (44%) Query: 400 GASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPSGGGPSGGGTSGGGTSGG 459 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 460 GTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGG 499 G GG + GG SG G + ++ G T G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 43.2 bits (101), Expect = 3e-06 Identities = 36/97 (37%), Positives = 44/97 (45%) Query: 223 GGGTSGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTS 282 G G + G S G GG +G G GG + G G S GG SG G GG SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 283 GGGASGGGASGGGASGGSASGGGASGGGASGGGASGG 319 GG + GG SG G + + + A G A +GG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 43.2 bits (101), Expect = 3e-06 Identities = 39/113 (34%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 330 GASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGS 389 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 390 GASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGTSGGGPS 442 G G + GG SG G G ++ G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 42.8 bits (100), Expect = 3e-06 Identities = 33/80 (41%), Positives = 38/80 (47%) Query: 445 GPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGGNSGGH 504 G G G + G S G GG +G G GG + G G SS G G G+G G GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 505 GNGNGGGASGGSGSGSGHGS 524 GNG G G SGG G+ S Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 42.8 bits (100), Expect = 4e-06 Identities = 37/102 (36%), Positives = 44/102 (43%) Query: 240 GTSGGGASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGG 299 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 300 SASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGA 341 GG + GG SG G + + A G A +GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 42.0 bits (98), Expect = 7e-06 Identities = 32/80 (40%), Positives = 37/80 (46%) Query: 465 GTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGSGSGHGS 524 G G G + G S G +G G GG G N GGG+ G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 525 GNGGGNGNGGGGGNGGGSGN 544 GNGGGNGN GGG GG+ + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 41.6 bits (97), Expect = 9e-06 Identities = 41/113 (36%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 285 GASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGG 344 G G G + G S GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 345 GASGGGASGGGASGGGASGGGTSGGGTSGGGA-SGGGASGGGASGSGASGSGA 396 G GG + GG SG G + + G A S GA G S S + S A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 41.2 bits (96), Expect = 1e-05 Identities = 35/100 (35%), Positives = 42/100 (42%) Query: 325 GASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGG 384 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 385 GASGSGASGSGASGGGASGGGASGGGASGGGASGGGASGG 424 G G + G SG G + + A G A +GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 41.2 bits (96), Expect = 1e-05 Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 440 GPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGAGHG-GHGGGTGGGG 498 G G G + G S G GG +G G GG + G G S G G G G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 499 GNSGGHGNGNGGGASGGSGSGS 520 GN GG+GN GG +GG+ S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 41.2 bits (96), Expect = 1e-05 Identities = 32/89 (35%), Positives = 41/89 (46%) Query: 534 GGGGNGGGSGNGTGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGN 593 GG G G +G + +G NGG G G GG + G GSG+G G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 594 GGHGNGGGHGNGNGSGGAGNGGANGVGSG 622 G G G G G+G+GG + A V G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 40.5 bits (94), Expect = 2e-05 Identities = 40/111 (36%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 375 GASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGG 434 G G G + G S SG G +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 435 GTSGGGPSGGGPSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSGGGTSSGA 485 G GG + GG SG G G ++ G T G G S+GA Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 40.1 bits (93), Expect = 3e-05 Identities = 38/117 (32%), Positives = 46/117 (39%), Gaps = 2/117 (1%) Query: 185 GASGHGTSGRGAAGGGASSGGASGGGASGGGASGGSASGGGTSGGGASGGGASGGGTSGG 244 G G G + + G +GG +G G GG + G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 245 GASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGSA 301 G GG + GG SG G G ++ G T G G S G S A Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 38.9 bits (90), Expect = 6e-05 Identities = 33/85 (38%), Positives = 38/85 (44%) Query: 462 SGGGTSGGGTSGGGTSGGGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGSGSG 521 SGG G T TSG G G GG + G G +S + G G G+ G GSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 522 HGSGNGGGNGNGGGGGNGGGSGNGT 546 HG+G G GN GG G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 38.9 bits (90), Expect = 6e-05 Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 488 GGHGGGTGGGGGNSGGHGNG--NGGGASGGSGSGSGHGSGNGGGNGNGGGGGNGGGSGNG 545 GG G G G ++ G+ NG G G GG+ GSG S N G G G + GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 546 TGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGG 585 GGN G G+G+ G ++ G S G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 38.9 bits (90), Expect = 6e-05 Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 509 GGGASGGSGSGSGHGSGNGGGNGNGGGGGNGGGSGNGTGNGGNNGGGHGNGSSGGGTSGG 568 G G +G+ S G+ NGG G G GGG GSG + N GGG G+G GG SG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-NPWGGGSGSGIHWGGGSGH 62 Query: 569 NGHGNGGGTSSGSGNGGGNGS 589 G G + GSG GG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 38.5 bits (89), Expect = 7e-05 Identities = 40/113 (35%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 280 GTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGASGG 339 G G G + G S G G +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 340 GASG-GGASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGASGSGA 391 G G G SGGG+ GG A+ S GA G S + S A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 38.5 bits (89), Expect = 8e-05 Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Query: 230 GASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGGASGG 289 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 290 GASG-GGASGGSASGGGASGGGASGGGASGGGTSGGGASGGGASGGGAS 337 G G G SGG + GG A+ S GA G S + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 38.2 bits (88), Expect = 9e-05 Identities = 36/99 (36%), Positives = 44/99 (44%) Query: 168 GRGNSVGNASGGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGGGASGGSASGGGTS 227 GRG++ G S G GG +G G G + G G SS GG SG G G SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 228 GGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGA 266 GG + GG SG G + + G A +GG A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 38.2 bits (88), Expect = 1e-04 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Query: 554 GGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNGGGHGNGNGSGGAGN 613 GG G G + G S G+ NGG T G G G +GSG + + GGG G+G GG Sbjct: 3 GGDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 614 GGANGVGSGNGGHGNGGGHGN 634 G G +GG GG+ + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 37.8 bits (87), Expect = 1e-04 Identities = 38/106 (35%), Positives = 44/106 (41%), Gaps = 1/106 (0%) Query: 303 GGGASGGGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGAS 362 G G + G S G GG +G G GG + G G S GG SG G GG SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 363 G-GGTSGGGTSGGGASGGGASGGGASGSGASGSGASGGGASGGGAS 407 G G SGGG+ GG A+ S GA G S + Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/83 (34%), Positives = 37/83 (44%) Query: 479 GGTSSGAGHGGHGGGTGGGGGNSGGHGNGNGGGASGGSGSGSGHGSGNGGGNGNGGGGGN 538 GG G G H GG +G G SG S + G G+G G GGG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 539 GGGSGNGTGNGGNNGGGHGNGSS 561 G G GNG GG+ GG+ + + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 37.4 bits (86), Expect = 2e-04 Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 250 GTSGGGASGGGASGGGASGGGTSGGGASGGGTSGGG-ASGGGASGGGASGGSASGGGASG 308 G G G + G S G GG +G G GG + G G +S GGG+ G GGG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 309 GGASGGGASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGAS 357 G G G SGGG+ GG A+ S GA G S + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 36.6 bits (84), Expect = 3e-04 Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 315 GASGGGTSGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTSGG 374 G G G + G S G GG +G G GG + G G S GG SG G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 375 GASGGGASGGGASGSGASGSGASGGGASGGGASGGGASGGGASGGGASGGGTSGGGTS 432 G GG G SG GSG G ++ G G G S G S Sbjct: 63 GNGGG----NGNSG---GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 35.8 bits (82), Expect = 5e-04 Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Query: 270 GTSGGGASGGGTSGGGASGGGASGGGASGGSASGGGASGGGASGGGASGGGTSGGGASGG 329 G G G + G S G GG +G G GG++ G G S GG SG SG GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG---SGIHWGGG 59 Query: 330 GASGGGASGGGASGG-GASGGGASGGGASGGGASGGGTSGGGTSGGGASGGGASGGGA 386 G G G + GG G G ++ G T G G S G S A Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 35.5 bits (81), Expect = 6e-04 Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 155 GTTGSTAGGTAATGRGNSVGNASGGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGG 214 G G A + GN G +G G GG + G G S GG S G GG SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 215 GASGGSASGGGTSGGGASGGGASGGGTSGGGASGGGTSGGGASGGGASGGGAS 267 G GG+ + GG SG G G ++ G T G G S G S Sbjct: 63 GNGGGNGNSGGGSGTG--GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 35.5 bits (81), Expect = 7e-04 Identities = 38/96 (39%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 128 NAGSGRGSSGGANDGNGAIGAAGIGVGGTTGSTAGGTAATGRGNSVGNASGGGTSGGGAS 187 + G GRG + GA+ +G I GG TG GG A+ G G S N GG SG G Sbjct: 2 SGGDGRGHNTGAHSTSGNIN------GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 188 GHGTSGRGAAGGGASSGGASGGGASGGGASGGSASG 223 G SG G GG +SGG SG G + + A G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 35.5 bits (81), Expect = 8e-04 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 540 GGSGNGTGNGGNNGGGHGNGSSGGGTSGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNG 599 GG G G G ++ G+ NG G G GGG S GSG N G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGL-------GVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 600 GGHGNGNGSGGAGNGGANGVGSGNGG 625 G G+G+G+GG G G+G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.002 Identities = 28/70 (40%), Positives = 36/70 (51%) Query: 566 SGGNGHGNGGGTSSGSGNGGGNGSGHGNGGHGNGGGHGNGNGSGGAGNGGANGVGSGNGG 625 SGG+G G+ G S SGN G +G G GG + G + + G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 626 HGNGGGHGNG 635 HGNGGG+GN Sbjct: 62 HGNGGGNGNS 71 Score = 30.1 bits (67), Expect = 0.028 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 111 GGNGEGAGAGGIGSGGDNAG--SGRGSSGGANDGNGAIGAAGIGVGGTTGSTAGGTAATG 168 GG+G G G + G+ G +G G GGA+DG+G + GG +GS +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW-SSENNPWGGGSGSGIHWGGGSG 61 Query: 169 RGNSVGNASGGGTSGGGASGHGTSGRGAAGGGASSGGASGGGASGGGASGGSAS 222 GN GN + GG SG G + + A G A S +GG A A SA+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 624 bits (1610), Expect = 0.0 Identities = 172/683 (25%), Positives = 295/683 (43%), Gaps = 75/683 (10%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWR 128 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ + GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRIAFVNKMDRVGADFFRVQRQIGERLKGVAVPIQIPVGAEEHFQGVVDLVKM 188 K +P I F+NK+D+ G D V + I E+L V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 189 KAIVWDDESQGVKFTYEDIPANLVELAHEWREKMVEAAAEASEELLEKYLTDHNSLTEDE 248 + + Q + E +++LLEKY+ SL E Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYM-SGKSLEALE 199 Query: 249 IKAALRKRTIANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAILGHDLDDKEAER 308 ++ R + P+ GSA N G+ +++ + + S Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 309 HPSDDEPFSALAFKIMTDPFVGQLIFFRVYSGVVESGDTLLNATKDKKERLGRILQMHAN 368 FKI +L + R+YSGV+ D++ + K+K ++ + Sbjct: 244 --RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSING 300 Query: 369 ERKEIKEVRAGDIAAAVG--LK-EATTGDTLCDPGKPIILEKMEFPEPVISQAVEPKTKA 425 E +I + +G+I LK + GDT P + E++E P P++ VEP Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQ 356 Query: 426 DQEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEIIVDRMKREFGVEATVGKP 485 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + +P Sbjct: 357 QREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEP 416 Query: 486 QVAYRETVRTVAEDVEGKFVKQSGGRGQYGHAVIKLEPNP-GKGYEFLDEIKGGVIPREF 544 V Y E + E + + + + P P G G ++ + G + + F Sbjct: 417 TVIYME---RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSF 473 Query: 545 IPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRRAK 604 AV +GI + G L G+ V D K+ +G Y+ S FRM + ++ +++A Sbjct: 474 QNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAG 532 Query: 605 PVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKLVRAEVPLAEMFGYS 664 LLEP ++ ++ P++++ D + + ++ E+P + Y Sbjct: 533 TELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ--LKNNEVILSGEIPARCIQEYR 590 Query: 665 TSLRSATQGRATYTMEFKHYAET 687 + L T GR+ E K Y T Sbjct: 591 SDLTFFTNGRSVCLTELKGYHVT 613
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 3e-04 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%) Query: 270 AKPADANAEGEDAGAQKETPLAQFTQNLNQMAKDGR-IDPLIGRESEVERVVQVLCR--R 326 KP D + LA+ + +++ D + PL+GR + ++ + +VL R + Sbjct: 103 PKPFDL----TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158 Query: 327 RKNNPLLVGEAGVGKTAIAEGLAYRITRGEVPDILANAQVYSLD-MGALLAGTKYRGDFE 385 ++ GE+G GK +A L R P + N D + + L G + +G F Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHE-KGAFT 217 Query: 386 QRLKTVLKELKERPHAILFIDEI 408 ++ LF+DEI Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEI 240 Score = 32.5 bits (74), Expect = 0.009 Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%) Query: 564 QDDRSKLQTLDRDLKSVVFGQDPAIDALAAAIKMARAGLGKLDKPIGAFLFSGPTGVGKT 623 + SKL+ +D +V G+ A+ + + + D + + +G +G GK Sbjct: 123 KRRPSKLEDDSQDGMPLV-GRSAAMQEIYRVLARL----MQTDLTL---MITGESGTGKE 174 Query: 624 EVAR---QLAFTLGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKKPHC 680 VAR + +M+ S L G + G T A T+ Sbjct: 175 LVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGR 226 Query: 681 V-------LLLDEIEKAHPDIFNVLLQVMDHGTLT---DNNGRKADFRNVIIIMTTNAGA 730 L LDEI D LL+V+ G T ++D R I+ TN Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATNKDL 283 Query: 731 ESM 733 + Sbjct: 284 KQS 286
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 27.4 bits (60), Expect = 0.015 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 23 QTERLALEEQVAQLRNEAQTLHAELEQLRDERNALAAERDTLSAKIDDAQVKLNAILEKL 82 Q + +E Q+ E QT E ++ D A + DT + D A KL KL Sbjct: 112 QAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 171 Query: 83 ----PRTKNVPDAENQLDLLAPQANDEGE 107 P AE ++ +A + E Sbjct: 172 QSLDPADPGYAQAEAAVEQAGKEATEAKE 200
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 29.0 bits (64), Expect = 0.039 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 144 AALAALSGLPCIALAQGDASASSASFASSVS--YAPAAA--SPADADSALSTAPAAAAAS 199 A AA GL A+ A AS AS A++ + YAP+A + +SA + AP A Sbjct: 5 ARWAATLGLTATAVCGPLAGASLASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTL 64 Query: 200 PASGAARGAEAVSADAASAV--ASGASSASPARAASAAQL--APVVVTA 244 + A G +A A + + A G SA A + APVVVT Sbjct: 65 TCAPTASGTHPAAAAACAELRAAHGDPSALAAEDSVMCTREYAPVVVTV 113
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.9 bits (93), Expect = 8e-06 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 64 AITLAAPARRVVSLAPHVTELIYAAG----GGAKLVGAVSYSDYPPAAKAIARVGSNKAL 119 A A R+V+L EL+ A G G A + + PP ++ VG Sbjct: 28 AHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEP 87 Query: 120 DLERIAALKPDLIVVWRHGNAEHETERLRALGIPLYFSEPRH-LDDVAASLDKLGLLLGT 178 +LE + +KP +V E A G FS+ + L SL ++ LL Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 179 HEIASAAADAYRRRIAQLRARYADK--PPVTVFFQAWDKPLITLNGDH-IVSDVIALCGG 235 A Y I ++ R+ + P+ + D + + G + + +++ G Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPL-LLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 236 RNVFAR 241 N + Sbjct: 207 PNAWQG 212
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.003 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 49 GTVNVWGGDGWRDRDHWRGGDDRWHGGWRGGGNWRGGNDWHGGRGNGWQGGRGPAGGRN 107 G + G G D W ++ W GG G +W GG HG G G G G N Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW-GGGSGHGNGGGNGNSGGGSGTGGN 80
>PF05860#haemagglutination activity domain. Length = 117 Score = 64.8 bits (158), Expect = 3e-14 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 23/138 (16%) Query: 72 AQVVG-AGANAPSVIQTQNGLQQVNITKPSGAGVSLNTYSQFDVPKVGVIVNNSPTLTNT 130 AQ+ S I T+ + + +G+ + + + +F VP G N+PT Sbjct: 1 AQITPDTTLPINSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNPT---- 55 Query: 131 QQAGYINGNPNLSPNGAARIIINQVNSNNPSQLKGYVEIAGQRAEMIISNSSGLVVDGGG 190 + II++V + S + G + A + + N +G++ Sbjct: 56 ----------------NIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQNA 98 Query: 191 FINTSRAILTTGTPNLNA 208 ++ + + + L Sbjct: 99 RLDIGGSFVGSTANRLKF 116
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.005 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 26 PSPADQAAAARANAEQDRQAQQQRDAQQRDAAVRAPSVRSEVPKVEAYPALPAETPCFRI 85 P+PA + AE +Q + + ++DA + ++ EA + A T + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDAT--ETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 86 DRFTLDVPNSLPDTTK 101 + + + TK Sbjct: 1086 AQSGSETKETQTTETK 1101
>PF03309#Bvg accessory factor Length = 271 Score = 33.6 bits (77), Expect = 0.002 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 21/169 (12%) Query: 118 LAARGRVDPEKRRPRDEHVAALDQLREMLEEQREQQHLNVRAVDIRIRQDADLAVTQVRH 177 + + R+ E DE +D L + A + + Sbjct: 26 VVQQWRIRTEPEVTADELALTIDGL------------IGDDAERLT-----GASGLST-- 66 Query: 178 VDAVVRAVRIDADRHRDVVHLVVREQAIALGLP-GVEHLAAQRQDRLVFLVAAHLRGAAR 236 V +V+ VR+ +++ V V+ E + G+P V++ DR+V +AA+ + Sbjct: 67 VPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCLAAYHKYGTA 126 Query: 237 RIALDEEQLVARDVLGLAVGQLAGQHRDAGALLLLDLLARARARLRLLD 285 I +D + DV+ A G+ G G + D A A LR ++ Sbjct: 127 AIVVDFGSSICVDVVS-AKGEFLGGAIAPGVQVSSDAAAARSAALRRVE 174
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.8 bits (113), Expect = 5e-07 Identities = 42/292 (14%), Positives = 80/292 (27%), Gaps = 20/292 (6%) Query: 379 RAQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTPSRQTTGATPPQPAPRAQTA----- 433 + R D QA V + + PP PA ++T Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETTETVAE 1042 Query: 434 -----APTAETARKRAPANPARAPLYAWHEKPAERIAPAAS--VHETLRSIEASAAQWTA 486 + T E + A A+ A K + + + E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 487 LAGATSTAATPVTARESMAAPAAPSGGAAASAAPDGHAPTSAETAAPNDHAPTSAETVAP 546 A V ++ P S + + P AE A ND E + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP-QAEPARENDPTVNIKEPQSQ 1161 Query: 547 DGHVPTSAETAAPDSHAPTSAETAAPDSHAPTSAETAAPDGHAPTSAE----TATPNDHA 602 + + A S T + + ++ P+ P + + + + N Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNT-GNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 603 STSAETAAPDSHAPTSAETAAPDGHASTITEAAAPNGHVSATVETSAVAAPV 654 + + H A T++ D + + + N + + + A A V Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN-AVLSDARAKAQFV 1271 Score = 45.4 bits (107), Expect = 2e-06 Identities = 52/311 (16%), Positives = 96/311 (30%), Gaps = 43/311 (13%) Query: 558 APDSHAPTSAETAAPDSHAPTSAETAAPDGHAPTSAETATPNDHASTSAETAAPDSHAPT 617 + P + + P S + E A D ATP++ T AE + +S Sbjct: 994 TTNITTPNNIQADVP-SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 618 SAETAA--PDGHASTITEAAAPNGHVSATVETSAVAAPVGITQAAPPIAADTCPAGEHVI 675 E A + + A N V A +T+ VA T+ E Sbjct: 1053 KNEQDATETTAQNREVAKEAKSN--VKANTQTNEVAQSGSETKETQTTETKETATVE--- 1107 Query: 676 AAVEPAGTSDSAAIGAGAIAHAEAGAAASTAETASPIGVDTHIAPSREADRTAQTAPTAP 735 E A T +T V + ++P +E T Q Sbjct: 1108 ---------------------KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 736 SPAEATPHVDAPHALDVAARALVGNTAATAHGAAAVDGSAQRADTASPAASTSGPPAPVA 795 + T ++ P + NT A A S +G V Sbjct: 1147 RENDPTVNIKEPQSQT--------NTTADTEQPAKETSSNVEQPVTESTTVNTGN--SVV 1196 Query: 796 ASAASSDRAAPQPVATAAPASIATSGALGTMKAIGAAGPQPSTIAAQRASAIDDTGQPPS 855 + ++ A QP + ++ + +++++ +P+T ++ S + Sbjct: 1197 ENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV-PHNVEPATTSSNDRSTV---ALCDL 1252 Query: 856 TGHSTHAAVSN 866 T +T+A +S+ Sbjct: 1253 TSTNTNAVLSD 1263 Score = 39.3 bits (91), Expect = 2e-04 Identities = 47/311 (15%), Positives = 84/311 (27%), Gaps = 39/311 (12%) Query: 703 ASTAETASPIGVDTHIAPSREADRTA-QTAPTAPSPAEATPHVDAPHALDVAARALVGNT 761 + T + I D PS + AP P PA ATP + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATP----------SETTET-VA 1041 Query: 762 AATAHGAAAVDGSAQRADTASPAASTSGPPAPVAASAASSDRAAPQPVATAAPASIATSG 821 + + V+ + Q A + VA A S+ +A Q + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNRE------VAKEAKSNVKANTQ-------TNEVAQS 1088 Query: 822 ALGTMKAIGAAGPQPSTIAAQRASAIDDTGQPPSTGHSTHAAVSNELGRRPHAAPDAVTP 881 T + + +T+ + + ++ ++ + E + Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 882 ALPPAAAARAAAVPTSASAVQRQALASESAEAAQGVARAAAAGDSRETTQVSPAGARPDK 941 P + T+ +A Q S+ Q V + + +P P Sbjct: 1149 NDPTVNIKEPQS-QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE-NPENTTPAT 1206 Query: 942 AAPSAAVANPIAPLPGASAITAHEDAPTSAAPDAATPVIAAMDSAMPNAVAPASAIA--S 999 P+ S+ S A S + VA + + Sbjct: 1207 TQPTVNSE---------SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 1000 NAGMSPASASA 1010 NA +S A A A Sbjct: 1258 NAVLSDARAKA 1268 Score = 34.7 bits (79), Expect = 0.005 Identities = 37/279 (13%), Positives = 65/279 (23%), Gaps = 33/279 (11%) Query: 300 PPPASAMPAPTIAAAKPAAATMPPSGLSKAERLAAPTGGAAAPLAAPAAAVTSPAAFAPA 359 PPPA A P+ T + + + T A A A Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR--EVAKEAKSNVKAN--TQ 1081 Query: 360 ATGIAKPIGSTAAVAALGKRAQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTPSRQTT 419 +A+ T + A + + ++ P Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 420 GATP-PQPAPRAQTAAPTAETARKRAPANPARAPLYAWHEKPAERIAPAASVHETLRSIE 478 A P + P P ++T PA+ ET ++E Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAK---------------------ETSSNVE 1180 Query: 479 ASAAQWTALAGATSTAATPVTARESMAAPAA-------PSGGAAASAAPDGHAPTSAETA 531 + T + S P + P P S H A T+ Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 532 APNDHAPTSAETVAPDGHVPTSAETAAPDSHAPTSAETA 570 + + + + + + S A A + Sbjct: 1241 SNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.009 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Query: 216 GAVAGDSGIAPGAGALGLPKGGATASGVAAKPAPAG---GFGARPGGGAVGVAVAAGVSA 272 GA + I G LG+ G + SG +++ P G G G GGG+ ++ Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 273 AGGSGPGVGLVGVTKPAPAGGFGTRPGGASAAAGALSAGAVAA 315 GGSG G L V P G GA A ++SAGA++A Sbjct: 72 GGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 1e-22 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 7 TVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLD 66 T+++ +D+ IR + AL G V A DL + D+ +PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 VIRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHL--RRR 123 ++ ++ ++PV+V+SA+ + A + GA DYL KPF ++EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 NQAGAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPL 160 + + V A++ ++R + T L Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 82.7 bits (204), Expect = 8e-24 Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Query: 8 IIVVQLLSALGVIGLVLLQHGKGADMGAAFGSGASGSLFGATGSANFLSRTTAVLATIFF 67 ++VV L+ A+G++GL++LQ GKGADMGA+FG+GAS +LFG++GS NF++R TA+LAT+FF Sbjct: 5 LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFF 64 Query: 68 VATLALTYLGSYKSAPSVGVLGAAPAPAASAPAASQTPAASA 109 + +L L + S K+ APA + PA Sbjct: 65 IISLVLGNINSNKTNKGSEWEN-LSAPAKTEQTQPAAPAKPT 105
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 30.3 bits (68), Expect = 0.011 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 117 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 169 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 170 GSQQHGFFAGHGVNFLSWNWLPLLPVFVIYFISGIA 205 GS ++G + GV + P+ IY G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>PF01540#Adhesin lipoprotein Length = 475 Score = 28.9 bits (64), Expect = 0.015 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 13 RTGRALADLLLKQQDFEVTALVRRPDFA--LPGAKVVVADLTGDFSSAFN-GITHAIYAA 69 + G+ AD LKQ + L + PD++ L +A+ T F A + G AI + Sbjct: 35 KNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDYPAIISK 94 Query: 70 GSAESEGATEEEQIDRDAVARAAD 93 SA E A E+Q A + AD Sbjct: 95 LSAAVENAKSEQQKVDQANKKIAD 118
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 745 bits (1925), Expect = 0.0 Identities = 279/1104 (25%), Positives = 502/1104 (45%), Gaps = 100/1104 (9%) Query: 3 LARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLPGASPETVATS 62 +A FI RP+ +LA+ + +AG A ++LPV+ P + P + V A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVAEMTSMS-SVGNARIVLQFNLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+S S S G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 SLKSNPTYRKVNPADSPIMVVSLTS--KTASPAKLYDAASTVLQQSLSQIDGIGQVSLSG 179 ++ + S +MV S + + D ++ ++ +LS+++G+G V L G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGP------HRYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QATKAAQYKDLVI-AYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLVILYRSPGAN 292 + ++ + + + + V L DV+ V E+ + +NG+ A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVSLVVMVVFLF 352 +DT + +KA L +L P ++V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDAIVVLENIAR 412 L+N RATLIP++AVP+ ++GTF + G+S+N L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ I++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLVVSLTLTPMMCARLLPEAHAPRDE--GRVARWLERGFEWMQRGYERTLSWALRHPF 529 A+S++V+L LTP +CA LL A E G W F+ Y ++ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 TILMTLVATIALNIALYIVVPKGFFPQQDTGLMIGGIQADQTTSFQAMKLRFTEMMRIIR 589 L+ +A + L++ +P F P++D G+ + IQ + + + ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 ANP-----NVANVAGFT-GGAQTNSGFMFVALKDKPQR---KLSADQVIQQLRPQLAEVA 640 N +V V GF+ G N+G FV+LK +R + SA+ VI + + +L ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GARTFLQAAQDIRAGGRQSNAQYQFT-LLGDSTAELYKWGP-ILTEALQKRPELADVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPQY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLKQIYISTSGGSASGVQTTNAAAGTYVATTARASTAGAAAQSAAAIAADSARNQ 818 PE + ++Y+ ++ G V + +V + R R Sbjct: 779 RMLPEDVDKLYVRSANGEM--VPFSAFTTSHWVYGSPRLE-----------------RYN 819 Query: 819 ALNSIASSG--KSSASSGAAVSTSKSTMVPLSAIASFGPSTTPLAVNHQGLFVATTISFN 876 L S+ G SSG A++ ++ Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLAS------------------------------K 849 Query: 877 LPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAALAAVYIVL 936 LP G+ G + P L+ + V++ L Sbjct: 850 LPAGIGY------------------DWTGMSYQERLSG----NQAPALVAISFVVVFLCL 887 Query: 937 GILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKKNAIMMVDF 996 LYES+ PV+++ +P VG LL LF + + ++G++ IG+ KNAI++V+F Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 997 AIDA-SRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAEMRAPLGIAIA 1055 A D ++GK +A A +R RPI+MT++A +LG LPLA G G+ + +GI + Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 1056 GGLIVSQMLTLYTTPVVYLYMDRL 1079 GG++ + +L ++ PV ++ + R Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 96.1 bits (239), Expect = 4e-22 Identities = 83/503 (16%), Positives = 167/503 (33%), Gaps = 25/503 (4%) Query: 2 NLARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLP-GASPETVA 60 N + L+ I + F++LP S LP+ D L LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD----VAEMTSMSSVGNAR----IVLQFNLNRDIDGAARDVQAAI 112 + + +L + V + S G A+ + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPASLKSNPTYRKVNPADSPIMVVSLTSKT-----ASPAKLYDAASTVLQQSLS 167 + A+ +L + + L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVSLSGSAN-PAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGPHR 226 + V +G + ++E++ + G+ L D+ +++A + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLV 283 +LY L + N V S ++ V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVS 343 +PG + D A + L + LPA I S R S + I+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFV 881 Query: 344 LVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDA 403 +V + + +W + + VP+ IVG A L + ++ L+ G +A Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 404 IVVLENI-ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFRE 462 I+++E + G ++A R +L SL+ + LP+ + G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 463 FALTLSLAIAVSLVVSLTLTPMM 485 + + + + ++++ P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVF 1024 Score = 59.9 bits (145), Expect = 5e-11 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 4/225 (1%) Query: 870 ATTISFNLPPGVSLSKATQVIYQTMAEV--GVPPTIQGS-FQGTAQAFQESLKDQPILIL 926 A + L G + + I +AE+ P ++ T Q S+ + + Sbjct: 286 AAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF 345 Query: 927 AALAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIV 986 A+ V++V+ + ++ + +P +G L F + + + G++L IG++ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 987 KKNAIMMVDFAIDASRQGKSSF-DAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045 +AI++V+ + K +A ++ ++ M +P+AF G Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLRVWAEKRRDRR 1090 + I I + +S ++ L TP + + + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 802 bits (2074), Expect = 0.0 Identities = 285/1035 (27%), Positives = 500/1035 (48%), Gaps = 31/1035 (2%) Query: 4 SRVFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVITLAVTSKTLPLTQ--VQDLADTRLAMKISQVSGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S+++GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L Y L D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQYNDAVV-AYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANV 293 + +++ + +G V L DVA++ G EN + A ++ +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFL 353 + T +KA L +LQ P + V D T ++ ++ +V L A+ LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLIERV----IERYGVALQWVLDRQR 528 +S +V+L L P +CA LL+ E H + G + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLK-PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 529 ATLVVAVLTLALTALLYVVIPKGFFPTQDTGVIQAITQAPQSVSYGAMAERQQALAAEIL 588 L++ L +A +L++ +P F P +D GV + Q P + + + L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 589 KH--PDVVSLTSFIGVDGANITLNSGRMLINLKPRDERS---ESASDVIRSLQRQVANVT 643 K+ +V S+ + G + N+G ++LKP +ER+ SA VI + ++ + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 644 GISLYMQPVQDLTIDSTVSPTQYQFMLTS---PNPDEFATWVPKLVDRLRKEPS-LADVA 699 + P I + T + F L D +L+ + P+ L V Sbjct: 659 DGFVI--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 700 TDLQNSGKSVYIEIDRTSAARFGITPATVDNALYDAYGQRIVSTIFTQSNQYRVILESEP 759 + +E+D+ A G++ + ++ + A G V+ + ++ ++++ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 760 QMQHYTDSLNGIYLPSAGGGQVPLSAIATFHERPAPLLVSHLSQFPATTISFNLAPGASL 819 + + + ++ +Y+ SA G VP SA T H + + P+ I APG S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 820 GEAVKAIDAAERELGLPASFQTRFQGAALAFQASLSNQLFLILAAIVTMYIVLGVLYESY 879 G+A+ ++ +L PA + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 880 IHPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERV 939 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 940 EGKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQ 999 EGK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1000 VLTLFTTPVIYLGFD 1014 +L +F PV ++ Sbjct: 1015 LLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 4e-08 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%) Query: 84 AARGEMPVVLNALGTVTPLANV-TVRTQLSGYLQAVSFQEGQIVKKGDVLAQIDPRP--- 139 + G++ +V A G +T ++ + ++ + +EG+ V+KGDVL ++ Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 140 ----YQISLANAQGALARDEALLATARLDLKRYQTLVAQ---DSIAKQTADTQASLVKQY 192 Q SL A+ R + L + L+ L + +++++ SL+K+ Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE- 193 Query: 193 EGTVQIDRAAIDSAKLNLAYARITAPVSG 221 Q + L + A Sbjct: 194 ----QFSTWQNQKYQKELNLDKKRAERLT 218 Score = 38.3 bits (89), Expect = 5e-05 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%) Query: 141 QISLANAQGALARDEALLAT--ARLDLKRYQTLVAQDSIAKQTADTQASLVKQY-EGTVQ 197 + ++ + L ++L+ + L A++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 198 ID--RAAIDSAKLNLAYARITAPVSGRV-GLRQVDPGNYVTPSDT--------NGIVVIT 246 I + + + I APVS +V L+ G VT ++T + + V Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 247 QLQPMSVIFTTSEDNLPAILKQVGAGGKLSVTAYNRNNTTPLETGV-LDTLDNQIDTATG 305 +Q + F AI+K V A+ L V LD D G Sbjct: 371 LVQNKDIGFINVG--QNAIIK---------VEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 306 TV 307 V Sbjct: 420 LV 421
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 2e-07 Identities = 60/266 (22%), Positives = 95/266 (35%), Gaps = 11/266 (4%) Query: 97 YATGMLVLAPLG----DRFDRRTLILLQIAGLSAALVVAAAAPTLGVLAAASLAIGILAT 152 YA AP+ DRF RR ++L+ +AG + + A AP L VL + GI Sbjct: 52 YALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA 111 Query: 153 IAQQAVPFAAEIAPPAARGQAVGTVMSGLLLGILLARTAAGFVAEYFGWRAVFAASVAAL 212 A + A+I R + G + + G++ G + + FAA AAL Sbjct: 112 TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA--AAL 169 Query: 213 AALAAVIVA-RLPRSSPTSTLPYGKLLASMWQLVRELRGLR--EASMTGGAIFAAFSAFW 269 L + LP S P + + R RG+ A M I Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 270 PVLTLLLAGAPFHLGPQAAGL-FGIVGAAGALAAPY-AGRFADKRGPRAIISLAIALIAA 327 L ++ FH G+ G +LA G A + G R + L + Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 328 SFAIFALSGASLIGLVIGVIVLDVGV 353 + + A + + I V++ G+ Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI 315
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.0 bits (163), Expect = 3e-15 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 19/266 (7%) Query: 1 MADHSIKGKTVIIAGGAKNLGGLIARDLAAQGAQAVAIHYNSAASKGAAAETVAAIEAAG 60 M I+GK I G A+ +G +AR LA+QGA A+ YN + + V++++A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLE----KVVSSLKAEA 56 Query: 61 ARAVALQADLTAAGAVEKLFVDTVAAIGRPDIAINTVGKVLKKPFVEITEAEYDEMAAVN 120 A A AD+ + A++++ +G DI +N G + +++ E++ +VN Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 121 SKTAFFFLKEAGRHVND--NGKIVTLVTSLLGAFTPFYAAYAGMKAPVEHFTRAAAKEFG 178 S F + +++ D +G IVT+ ++ G AAYA KA FT+ E Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 179 ARGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSKTGL--------TDIGDVV 230 I V PG +T + + A +L F KTG+ +DI D V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF-KTGIPLKKLAKPSDIADAV 235 Query: 231 PFIRHLVSD-GWWITGQTILINGGYT 255 F LVS IT + ++GG T Sbjct: 236 LF---LVSGQAGHITMHNLCVDGGAT 258
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.9 bits (116), Expect = 6e-08 Identities = 39/277 (14%), Positives = 74/277 (26%), Gaps = 10/277 (3%) Query: 328 EPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAVAAPAAAGSGPAASAPAAPV 387 P+ + + A PPA P+ + S + A A Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 388 RHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPA 447 A A ++ A A + + T + A A T P Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 448 SIPAPAPASAPASTPAPASTPAPASAPAPASAPAPAPTTNPASSIAPAAAPFASAIPPAR 507 S +P + T P + PA + P + T A + PA ++ P Sbjct: 1127 S--QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 508 AEKFAPAVTATTAGSASTPASAAAPS----SPSSPSSPWLPPLLPPLLSPDAPSPPADTA 563 + +T + P+ S + P + + + + + ++ Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 564 RTAPLAPAAS----PATAAAAATNATATAGAMQSAPR 596 T L S + A A ++ + Sbjct: 1245 STVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQ 1281 Score = 41.2 bits (96), Expect = 1e-05 Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 6/222 (2%) Query: 306 DPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSAS 365 + T +++ K A K V + E A+ +T T A V A + Sbjct: 1060 ETTAQNREVAKEA-KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 366 SAVAAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPA---PAS 422 + + P A PA + + PA ++ Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 423 TPAPASAPTPASAPTPTPASAPTPASIPAPAPASAPASTPAPASTPAPASAPAPASAPAP 482 P + T + + P + P S+ P + + P + Sbjct: 1179 VEQPVTESTTVNT-GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Query: 483 APTTNPASSIAPAAAPFASAIPPARAEKFAPAVTATTAGSAS 524 ++N S++A + ++ A A + Sbjct: 1238 TTSSNDRSTVALCDLTSTNTN-AVLSDARAKAQFVALNVGKA 1278
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.018 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 390 LKAGEEADARTPAA---LRRGRKLVVQIGE----------TFGEKNAPMFVEQLDALRLA 436 L+ E P A L G I + F EKN + ++LD L Sbjct: 127 LEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKE 186 Query: 437 DKLALDLAPVMVYGDDVTHVVTEEGIANLLMCRDADEREHAIRGVAGYTEIGRGRDRRLV 496 K + P + +VT EG + I + E + + LV Sbjct: 187 SKDKFNKIP-----AEKKLIVTSEGAFKYF-SKAYGVPSAYIWEINTEEEGTPEQIKTLV 240 Query: 497 ERLRERGV 504 E+LR+ V Sbjct: 241 EKLRQTKV 248
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 31.0 bits (69), Expect = 0.023 Identities = 24/110 (21%), Positives = 56/110 (50%) Query: 52 GPAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSA 111 G A + +KSA++ ++A+ A+S AK+ ++ + + ++A+ ++ + + Sbjct: 249 GIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTL 308 Query: 112 KSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAKSAMSAMSAMSAMSAMS 161 ++A+ + KSA++ SA +KS+ + K+A S + S A+ Sbjct: 309 ETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNSTKKAIR 358
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.004 Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 174 ARRRPRRPVSPTSPTSPTSPTSPTSPTSPTSPTSP 208 P P +P +P +P +P P +P +P +P +P Sbjct: 288 QPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNP 322
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.8 bits (132), Expect = 4e-10 Identities = 84/376 (22%), Positives = 143/376 (38%), Gaps = 47/376 (12%) Query: 205 PSAQLLATFGTFAAAF-LVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSY 263 S + A +G A + L++ V G L DR GR+ VL +++ AV + P Sbjct: 37 HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL 96 Query: 264 DSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRR----GFMGSFLEFGTLIG 319 +L + R+V G TG A +IA+ + R GFM + FG + G Sbjct: 97 W--------VLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 320 YVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIG-LYIRMRLEETPAFKRQAEAR 378 V+G L S PF A L + L L E+ +R+ R Sbjct: 148 PVLGG-----LMGGFSP--------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 379 EAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAH-G 437 EA + P A FR A L+ V ++ AL + + H+D G Sbjct: 195 EALN---PLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIG 249 Query: 438 LVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGG 497 + L ++ + + TG ++ +G + ++ +G+ A +LL + F Sbjct: 250 ISLAAFGILHSLAQAMITGPVAARLGERRALM---LGMIADGTGYILLAFATRGWMAFPI 306 Query: 498 LLILGALLSCFTGVMPSALPALFPTEI---RYGALAIGFNVSVSLFGGTT-PLAAAWLVD 553 +++L G+ AL A+ ++ R G L G +++ PL + Sbjct: 307 MVLLA-----SGGIGMPALQAMLSRQVDEERQGQLQ-GSLAALTSLTSIVGPLLFTAIYA 360 Query: 554 ATGNLMMPAYYLMGAA 569 A+ ++ GAA Sbjct: 361 ASITTWNGWAWIAGAA 376 Score = 31.3 bits (71), Expect = 0.012 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%) Query: 401 LLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLA--TGRL 458 L VG+ LI V LP L +H ++ IL+ + +M A G L Sbjct: 15 ALDAVGIGLIMPV--------LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 459 SDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPA 518 SD GR+PV+ V L A+ ++ +++ G ++ G ++ TG + A A Sbjct: 67 SDRFGRRPVL---LVSLAGAAVDYAIMATAPFLWVLYIGRIVAG--ITGATGAVAGAYIA 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 7e-21 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64 ILV +D+ AI +++ L AG+ NA I+ DLV+ D ++P ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL---R 121 ++ + +P+++++A+ + E GA DY+ KPF EL+ I L + Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 RRAPQLTEDVVSINGL 137 RR +L +D L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 42.9 bits (101), Expect = 1e-06 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 26/106 (24%) Query: 328 LVTNAIRY----TPEGGTIRVEWRRDGAQAVFSVADSGLGIPAAELPRLTERFYRVDRSR 383 LV N I++ P+GG I ++ +D V ++G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG------------------SLAL 304 Query: 384 SRDTGGTGLGLAIVKHVLQR---HDAQLSIQSEEGRGSTFTARFPA 426 TG GL V+ LQ +AQ+ + ++G+ P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIPG 349
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.4 bits (86), Expect = 3e-04 Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 16/262 (6%) Query: 367 QQIGEQLAKVEQLQGALRAHSGAAVNGPNGLISAREALDIEMKKLDVLR---NQQAEQFK 423 + + + A + + L A+N + + L+ E L+ + + E Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203 Query: 424 AIRQREADAKGGDAAVRVRAYLGDSRYATPKEKHSLEVQDENKKFAEAISDLDKNSKEYA 483 ++ A + + E ++ K ++ A Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 484 DALKRHQDNVAQINESYANKNRKHTSEGGLNAELARLAGMNRLIEAEAKRSEASLKAQRD 543 + K + + A + L AE A L ++++ A + L A R+ Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 544 AGLMDSETYFQRLHDIQAKALDQQIANAKQ---RADIASAKKEKSTYETANAEYLRLAEE 600 A Q + Q +I+ A + R D+ ++++ K E AE+ +L E+ Sbjct: 324 A-------KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE---AEHQKLEEQ 373 Query: 601 RKKIDADLTDALAKYQAQRAAN 622 K +A A R A Sbjct: 374 NKISEASRQSLRRDLDASREAK 395
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 9e-05 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 88 FMRPIGGIVIGGIADKVGRRAALTVTIALMTAGTAMIGFAPTYKDAGLGAPLMIVVARLL 147 M+ V+G ++D+ GRR L V++A A++ AP ++ + R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 148 QGFSAGGEMGGATAYLRERVSAERHGYYTSWIQASIGFAIILASVLAVFI 197 G + G A AY+ + + + ++ A GF ++ VL + Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM 154
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 1e-04 Identities = 49/274 (17%), Positives = 87/274 (31%), Gaps = 15/274 (5%) Query: 767 EKYVHKLREESDVIGMTARQKAEYEARTKGANDAQARMAGLVAGRADAYKSLEKAIADKD 826 KLR+ + A + E EAR A + K+LE A Sbjct: 95 SNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALA 154 Query: 827 AKAAA--GARTNIDNLTRELALMNQQMVVAKALEEFQADLSSKKFEKFGFNADAARAAAA 884 A+ A A N + + + + KA E + K E A A + Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEG----AMNFSTADS 210 Query: 885 ARGKQAFDETVASAAAQTARVSTNAAAARAAKGGGVHSLESERMLDNIRQRIAQLRVEAV 944 A+ K E A AA + A + + + A L Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFST-------ADSAKIKTLEAEKAALEARQA 263 Query: 945 ATDKLTQSQKDLLAFDQKVTDLRSKRKKLSDDDKSLLRDQQAIRGMYEQASQLEKEVRYR 1004 +K + + D K + +K+ L Q + Q+ + + + R Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS-R 322 Query: 1005 DAINKLKERSAQIDAELGDYAAERQRDVQRELGA 1038 +A +L+ +++ + A RQ ++R+L A Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQ-SLRRDLDA 355
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.033 Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 2/46 (4%) Query: 372 GRQAGVIANEWWDFPELLGEGPEID--EDGDFIVRQYDESGKEIFG 415 GR N W + E P ED D V +E GK F Sbjct: 24 GRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFL 69
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.5 bits (61), Expect = 0.036 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 56 AIDPSLLEYGAPLRRLGYIVEKEIDRAAP-FARMREPVAPFSDEWRAREELKSKRWESPD 114 A+ L + G + + I + +D+ P F +PV PF DE A+ + K W + Sbjct: 96 ALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKE 155 Query: 115 DAPPG-----ASPKSV 125 D+ G SP Sbjct: 156 DSGRGWRRVVPSPDPK 171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.004 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 12/64 (18%) Query: 209 VIAAAAGTVVYAGNGLRGYGNLLIVKHDADFLTTYAHNRALLVKEGQTVAQGQKIAEMGD 268 ++A A G + ++G +K + + ++VKEG++V +G + ++ Sbjct: 82 IVATANGKLTHSGR-------SKEIKP---IENSIV--KEIIVKEGESVRKGDVLLKLTA 129 Query: 269 TDND 272 + Sbjct: 130 LGAE 133
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.012 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 3/216 (1%) Query: 389 LIAAQQKIVDANKASQEAAAREAADKAALADSLRTVTAEYERTKSAQQHLSDAVKHDNAV 448 L A + + ++A A + ++T+ AE ++ Q L A++ Sbjct: 146 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 205 Query: 449 IDTRIALLTKQGKMTDSVRAQLEAQRKQMIAFDTEHITPTRKHGSGSAIAEMNAETQTGM 508 A + ++ A+ K + + K + AE A Sbjct: 206 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK--IKTLEAEKAALEARQA 263 Query: 509 AIRQLIEQQAEKQLQAQRQLGVIDAETYYRRLTDLQKSALNDQIALASRRADVLRSSSDK 568 + + +E ++ ++AE + Q+ A+R++ + + Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAE-KAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Query: 569 RAYTEAAAAVEKLQLQQKGLDTSLQDTLTGLSQRRD 604 A + A +KL+ Q K + S Q L R+ Sbjct: 323 EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 9e-19 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%) Query: 162 IYLIEDDEVQARCYAAILQHAGYSVRVLPDGERALREIQRAAPDLIVLDRRLPDIDGLEI 221 I + +DD L AGY VR+ + R I DL+V D +PD + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 222 IAWVRERCAPLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARV-NALRRRASI 280 + +++ LP+LV++ ++A E GA DYL KP E + + AL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 281 SKQFEGTIEIGGYRI 295 + E + G + Sbjct: 126 PSKLEDDSQDGMPLV 140
>PF03895#Serum resistance protein DsrA. Length = 79 Score = 39.4 bits (92), Expect = 4e-06 Identities = 21/77 (27%), Positives = 40/77 (51%) Query: 998 VARAAYGGIAAATALTMIPEVDKDKTIAVGIGGGTYRGYQAVALGATARITENIKVRAGV 1057 +++ G+A +AL+M+ + + +V G YR A+A+G +RIT+ +AGV Sbjct: 1 LSKELQTGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGV 60 Query: 1058 GMSSGGTTAGIGASMQW 1074 ++ GAS+ + Sbjct: 61 AFNTYNGGMSYGASVGY 77
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 127 bits (321), Expect = 2e-37 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 10/151 (6%) Query: 87 FQCGEPAQPVAQQPQPAPAAAPAAEPIRLNADAMFAFDRADAASMTEQGRQQLSQLAQRL 146 F GE A VA P PAPA + L +D +F F++A + +G+ L QL +L Sbjct: 191 FGQGEAAPVVA--PAPAPAPEVQTKHFTLKSDVLFNFNKAT---LKPEGQAALDQLYSQL 245 Query: 147 TDRHAQTVSIV--GYTDRLGSDAYNRQLSQARAKTVGDYLIAAGVPADSVHAEGRGASDP 204 ++ + S+V GYTDR+GSDAYN+ LS+ RA++V DYLI+ G+PAD + A G G S+P Sbjct: 246 SNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP 305 Query: 205 LV--QCDQ-RERAALIACLAPNRRVEVVAAG 232 + CD ++RAALI CLAP+RRVE+ G Sbjct: 306 VTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 59/353 (16%), Positives = 120/353 (33%), Gaps = 55/353 (15%) Query: 27 VDTQMFSLVIPALLTAWGIGKGQAGLIGGATLAAGAIGGLLAGMIADRFGRVRALQITVC 86 ++ + ++ +P + + + A + +IG + G ++D+ G R L + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 87 WFSLFTFLSAFAQNFEQLLVL-KTLQGLGFGGEWTAGAVLLSETIRARHRGKAMGIVQSA 145 + + +F LL++ + +QG G V+++ I +RGKA G++ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 146 WGFGWGGAVLLYTLVFSWLPPEWAWRVLFAIGVLPALLVLYIRRAIPEPPRDDAR----- 200 G G + ++ ++ W L I ++ + V ++ + + + R Sbjct: 148 VAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 201 ----------------------VAVSTSAAAAQTAPARASAKSIFDPSV------LRMTI 232 + VS + R DP + + + Sbjct: 204 IILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVL 263 Query: 233 VGGLIGVGAHGGYHAITTWLPTYLKTERHLSVLGTG------AYLAVIIVAFIIGCMTSA 286 GG+I G + +P +K LS G ++VII +I G Sbjct: 264 CGGIIFGTVAG----FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG----- 314 Query: 287 YLQDRIGRRRNLMLFSACCVVTVNLYVMLPLDNVAMLLLGFPLGFFAAGIPAT 339 L DR G +L ++V+ L + + F G+ T Sbjct: 315 ILVDRRGPL--YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 454 bits (1169), Expect = e-149 Identities = 166/808 (20%), Positives = 267/808 (33%), Gaps = 89/808 (11%) Query: 65 GTLYLELVVN-ALSTGRIVPVRYRDGVYYARA----GDLAQASVRTGAQP-------DAL 112 GT +++ +N R V D LA + T + DA Sbjct: 76 GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135 Query: 113 VDL-SRLDGVQVEYESAEQRLKLTVPPDWLPRQTLG--SPRLYDRTPAAVSFGLLFNYDV 169 V L S + + + +QRL LT+P ++ + G P L+D A L NY+ Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA----GLLNYNF 191 Query: 170 YANSPT--LGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRY 227 NS +G + A+ + G Y GS ++ W Sbjct: 192 SGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLE 251 Query: 228 SDQDRLR-TYTAGDVITGALSWSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTA 286 D LR T GD T + + G + D + PD P G A Sbjct: 252 RDIIPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQ 310 Query: 287 VDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDALGRQVATTIPFYVANTLLQ 346 V + NG V PGPFT+N++ +G+ V +A G T+P+ L + Sbjct: 311 VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQR 370 Query: 347 KGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGF 406 +G + YS++AG R + T HGL T+ G + +R+ G Sbjct: 371 EGHTRYSITAGEYRSGNAQQE---KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGI 427 Query: 407 DLGIGMFGVLGVAATQSRLAGASGRQY---------------------AFGYSYASQRF- 444 +G G L V TQ+ Q+ GY Y++ + Sbjct: 428 GKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 445 SVSLQRIQRTNGFRDLS--------VYDLPANVAYRLVRSSTQATGALNLGALG----GT 492 + + R NG+ + R Q T LG Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 493 LGAGYFDVRGADGTRTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIV--PLG- 549 Y+ D N ++ W TL S+ K + G L L V P Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINW---TLSYSLTKNAWQKGRDQMLALNVNIPFSH 604 Query: 550 ----------EPGVVTGALARDANNSFSERVQYSRSVPSDGGLGWNL--AYAGGGSHYQ- 596 + +++ D N + ++ D L +++ YAGGG Sbjct: 605 WLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664 Query: 597 ---QADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDDAFVLID 653 A +R Y A G + + V G V+ V ++D VL+ Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDDIKQL--YYGVSGGVLAHANGVTLGQPLNDTVVLVK 722 Query: 654 TQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAV 713 G V ENQ +TD G+ ++P+A Y + +D L NV + V Sbjct: 723 APGAKDAKV--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 714 RDHGGALVTFPIRRIVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSA 773 F R + + +P+ G+ V E S + +V G+ YL G+ Sbjct: 781 TRGAIVRAEFKARVG-IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL 839 Query: 774 LNHLRVR--TPDGRTCRATFAADVDAAQ 799 ++V+ + C A + ++ Q Sbjct: 840 AGKVQVKWGEEENAHCVANYQLPPESQQ 867
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.9 bits (153), Expect = 2e-12 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 401 RVLVVDDQEMNRIVLRYQLDALGHHARLCASGDEALRALGTAAYDVVLTDCRMPGMDGIA 460 +LV DD R VL L G+ R+ ++ R + D+V+TD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 461 LTAAIRAH-PDARVRATPIVGVTALVSDAEHARCVDAGMTLCIGKP----TTLDALERAL 515 L I+ PD P++ ++A + + + G + KP + + RAL Sbjct: 65 LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 516 VE 517 E Sbjct: 120 AE 121
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.025 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 203 GAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGATGAAEGAEGAEAVADAVSAANVA 262 G+G+ GG +GG+K A A + A AA AEA A A + + A Sbjct: 31 GSGSGGGGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRD-A 89 Query: 263 DTADTANSANSANSANSANSANSANSANSANSANSATA 300 T + N A N++ + ++ A++ N+A A Sbjct: 90 LTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAED 127
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 47.7 bits (113), Expect = 6e-08 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 26/154 (16%) Query: 119 GSGFIVGADGIILTTAYVVGQASEATVRLIDRR-----------EFKA-RVLAVDDSSDV 166 SG +VG +LT +VV L F A ++ D+ Sbjct: 104 ASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 167 AVLQIDATK--------LPTVRLGDSSRVRTGEPVLTIGTPDGSANTVTTGIVSATARML 218 A+++ + + + +++ + + + G P G T + ++ Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP-GDKPVATMW--ESKGKIT 219 Query: 219 PDGGRFPFFQTDVTGNLDNSGGPVFNRAGEVIGI 252 G + TG NSG PVFN EVIGI Sbjct: 220 YLKGEAMQYDLSTTGG--NSGSPVFNEKNEVIGI 251
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 27.6 bits (61), Expect = 0.039 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 190 VDIREEALHELIDRLDDLASEFHSAF--LHEAGK 221 + R + L + + L LA F AF H+AG Sbjct: 283 LTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGF 316
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.041 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 99 NGATVMVYGEVAGTIQGSPAPLYQRPRFVDDAQW----DAYAERVDAFARYTRAQGV-RL 153 T + + G + P + + A+ ++ +A+ + Sbjct: 207 KEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKD 266 Query: 154 GYHHHMGAYVESPADVARLMASTSDAVGLL 183 G H + A + +P DV ++A+ + +GL Sbjct: 267 GAHVELAANIGTPKDVDGVLANGGEGIGLY 296
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%) Query: 41 LLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKDA 82 L G G GKSTLI TL G+ + D + KD+ Sbjct: 601 LEGTGGIGKSTLINTLVGL------DFFSDT-HFDIGTGKDS 635
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (301), Expect = 5e-35 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 16/261 (6%) Query: 7 LEGKVALITGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAAGGAAHVVSLD 66 +EGK+A ITGA+ G+G+ A+ L+ GA + E+L+++ + ++A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VTDYQSIRAAVAHAETEAGTIDILVNNSGVSTMQKLVDVSPADFEYVFDTNTRGAFFVAQ 126 V D +I A E E G IDILVN +GV + +S ++E F N+ G F ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 EVAKRMMMRAGSGNAKPACRIINIASVAGLRPFSQIGLYAMSKAAVVHMTRAMALEWGRH 186 V+K MM R I+ + S P + + YA SKAA V T+ + LE + Sbjct: 126 SVSKYMMDRRSGS-------IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 187 GINVNAICPGYIDTEINHYLWETEQGQ---------KLQSMLPRRRVGKPQDLDGLLLLL 237 I N + PG +T++ LW E G ++ +P +++ KP D+ +L L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 238 AADESQFINGSIVSADDGLGL 258 + ++ I + D G L Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 26.6 bits (59), Expect = 0.037 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 87 SVQIFISDMANFPGMNEVWDAWVAQGATPPRATV 120 S+ + +A F G N W +WV Q T + Sbjct: 284 SLLYIPALVAQFAGGNSGWKSWVEQNLTKGDHPI 317
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 119 bits (299), Expect = 2e-38 Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 37 TKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGR 96 K +L + ++ L K+++ V+A F + L GE V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 97 NPKTGEAIPIAARRVVTFHASQKLKALVE 125 NP+TGE I I A +V F A + LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.033 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 36/179 (20%) Query: 513 APWDAMSDLFNRHLLDYSPRSLNDLKLSADGGALRVRGGIKLWNQVPPGVWLPADMKGSL 572 AP + FN L P+++ DL +G ++PPG + D+ + Sbjct: 40 APLSSAELYFNPRFLADDPQAVADLSRFENG------------QELPPGTY-RVDIYLNN 86 Query: 573 TLLDERHLAFTPTQVSVLGIP--QAKLLRALGIELSSLAPLKRRGAELRGDSLVLDQYTV 630 + R + F +P L ++G+ +S++ + + L Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLA---DDACVPLTSM-- 141 Query: 631 FPPPVLIGHMSQATVEPDG----LRLTFRPAPNAPVLRPPANLPGSYLWLEGGDTKMFN 685 + AT + D L LT P A + LW G + + N Sbjct: 142 ---------IHDATAQLDVGQQRLNLTI---PQAFMSNRARGYIPPELWDPGINAGLLN 188
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 0.002 Identities = 17/180 (9%), Positives = 43/180 (23%), Gaps = 1/180 (0%) Query: 661 AAERAR-QAADGGRDRRERVRRAAAARQQAADRRDRVARRRHRLAEARRDRVVARLRDQR 719 E+ R Q + + + + R L + + + + Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 720 AGLVQPAADRAEQRVDGRAEARHVADRLRRARDHRRDRRDRRADRLRQLLDGARRQRGGE 779 L + A+R R D + + L + Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 780 RRAARRDRVAERADRAAERRRERGERRERAGAEARHEVARLRDGAAQLADHAARARDRRA 839 + ++ + + E + E ++ + D L A+ +R+ Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 40.4 bits (94), Expect = 1e-05 Identities = 27/78 (34%), Positives = 37/78 (47%) Query: 448 PPDVEPPPEVEPPPPDRPPVEPELPLPPEPEPPAPLVPPEPEPPVVEIALPPPLPEPEPS 507 P D+EPP V+PPP EPE PEP AP+V +P+P P + +P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 508 RPLLIVPEPPQAERESMA 525 R + V P + E+ A Sbjct: 112 RDVKPVESRPASPFENTA 129 Score = 38.4 bits (89), Expect = 4e-05 Identities = 22/75 (29%), Positives = 26/75 (34%) Query: 432 SALMLDEVDVPPEVEPPPDVEPPPEVEPPPPDRPPVEPELPLPPEPEPPAPLVPPEPEPP 491 S M+ D+ P P EP E EP P P E P+ E P P P+P Sbjct: 46 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105 Query: 492 VVEIALPPPLPEPEP 506 V E P Sbjct: 106 VQEQPKRDVKPVESR 120 Score = 34.2 bits (78), Expect = 0.001 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 424 PVLPAIVPSALMLDEVDVPPEVEPPPDVEPPPEVEPPPPDRPPVEPELPLPPEPEPPAPL 483 P+ +V A + V P EP + EP PE P PP PV E P P P P+ Sbjct: 44 PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 103 Query: 484 VPPE--PEPPVVEIALPPPLP 502 + P+ V + P P Sbjct: 104 KKVQEQPKRDVKPVESRPASP 124
>cloacin#Cloacin signature. Length = 551 Score = 46.6 bits (110), Expect = 2e-07 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%) Query: 128 GGSGTISKGLDGSGSGSGGGNAISTTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGS 187 G+ + S ++G +G G G S G S GGSGSG G +G +GGG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG-IHWGGGSGHGNGGGNG 69 Query: 188 TSGGGSTSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLP 244 SGGGS +GG ++ + AL T + AG+ + + ++ + P Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGP 126 Score = 42.4 bits (99), Expect = 5e-06 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 136 GLDGSGSGSGGGNAI-STTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGG-GSTSGGGS 193 G DG G +G + + GG G G GSG S + GG SG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 194 TSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQA 253 +GGG+ + G + + N A G + + GL + + L A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 254 LGG 256 L G Sbjct: 123 LKG 125 Score = 36.6 bits (84), Expect = 3e-04 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 10/128 (7%) Query: 153 TGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGSTSGGGSTS---GGGSTSGGTSTSSS 209 +GG G G +GA + +G G+ GG SG S + GGGS SG S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTG-LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 210 INALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQALGGVVQSL-GGAVSAL 268 + G GN+GG GS G + V + G +T GG+ S+ GA+SA Sbjct: 61 GHGNGGGNGNSGG-----GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Query: 269 GSGVTSGI 276 + + + + Sbjct: 116 IADIMAAL 123
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 53.7 bits (129), Expect = 3e-11 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 4 LFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAV 63 + A+ D +P++L L L ++F + F +L A+IG Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL--LGGF-VSLGDAVIGAMA 190 Query: 64 GLVSLFPFFAL-------RVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 116 G + L+ + MG D K+ A LGAW G ALP + +++S+ + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LLTR 120 LL Sbjct: 251 LLRN 254
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 138 bits (349), Expect = 2e-37 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 11/249 (4%) Query: 160 VQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGG----TSSMSVSANI 215 V V+ + E + G+ + +N G T + + +++ G S+ Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA 406 Query: 216 PIASAFN-LVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVP 274 S+FN + G L+ L ++ +LA P++V L A+F G E+PV Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 275 QSLGT-----ISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA 329 + +++ K G+ L + P + + L++ E S + S + + Sbjct: 467 SQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-STSSDLGAT 525 Query: 330 LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKEL 389 TR + V +G GE+ +GGL+D+ + DKVP LGD+P+IG F+ S + + + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 390 VIIVTPHLV 398 ++ + P ++ Sbjct: 586 MLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 5e-05 Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 79 AALRVSHPGLPIVALGSLGEPESALAALRAGVRDFIDFSAPAEDALRITRGLLDHVGDQP 138 ++ + P LP++ + + +A+ A G D++ + + I L +P Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 139 SRH 141 S+ Sbjct: 127 SKL 129
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 92.6 bits (230), Expect = 2e-22 Identities = 74/403 (18%), Positives = 153/403 (37%), Gaps = 16/403 (3%) Query: 18 FMQNLDSTVVATALPSMARELGVNVVFLSSAITSYLVALTVFIPVSGWIAERFGAKRVFI 77 F L+ V+ +LP +A + + T++++ ++ V G ++++ G KR+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 78 AAIAIFTAASVMCAAANGLAT-LVAARILQGAGGALMVPVGRLILYRGVSRHEMLAATTW 136 I I SV+ + + L+ AR +QGAG A + +++ R + + A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 137 LTMPALVGPLLGPPLGGFLTDALSWRAVFWINVPVGVAGAALAARLVPASAGERRAPADA 196 + +G +GP +GG + + W + + +P+ + + D Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 197 RGMLLVGAALAALMLGVETAGRDVLPAGAPALCLGAGVALGGLAIRHCRRVAHPVVDLSL 256 +G++L+ + ML + L + + ++H R+V P VD L Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVLSF---------LIFVKHIRKVTDPFVDPGL 252 Query: 257 L-GIPTFHAATIAGSLFRAGAGALPFLVPLTLQVGFGASASRSGAITLASA-LGSLVMRP 314 IP G +F AG + +VP ++ S + G++ + + ++ Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFV-SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 315 MTHAALHRAPMRTVLIAGSVSFAAVLAACATLSPAWPDAAVFALLLVGGLSRSLSFASLG 374 + + R VL G + + L ++ V G S + + Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIS 370 Query: 375 ALVFSDVPSERLSAATSFQGTAQQLMRAVGVAVAAGALHLAML 417 +V S + + A S L G+A+ G L + +L Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.027 Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 5/171 (2%) Query: 440 ASEVRSLAQRSSSAAKEIKDLINASVQKIHDGSALAGEAGKTMTEVTQAVARVTDIMGEI 499 + + S++ D S + + ++ V + E Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET 1061 Query: 500 AAASGEQSRGIEQVNQAIAQMDEVTQQNAALVEEAAAASKSLEEQGRHLTQAVSFFRASA 559 A + E ++ + +A Q +EV Q + E +K + + Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA-----KVET 1116 Query: 560 ASAAPQARHAAPAKPKAKRGVAAPAPAPRAAHAAPTFNKPAPALAAAATAS 610 + + PK ++ A A PT N P TA Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 93.3 bits (232), Expect = 3e-23 Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 64/380 (16%) Query: 44 ASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNASRWGLRGREDLG 103 A A + V LYG I + + + +GA + T S+ G +G+EDLG Sbjct: 12 ALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVE--TGTGIVDLGSKIGFKGQEDLG 69 Query: 104 DGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDF--VT 161 +G+ AI+ +E AS A + G RQ++IGLK G L +GR ++ D + Sbjct: 70 NGLKAIWQVE---QKASIAGTDSG--WGNRQSFIGLK-GGFGKLRVGRLNSVLKDTGDIN 123 Query: 162 PLGASGPGWGGNLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGQFGN 221 P + G N P R I +V+Y SP + G + Y ++ AG N Sbjct: 124 PWDSKSDYLGVNKIAEP-----EARLI----SVRYDSPEFAGLSGSVQYALNDNAG-RHN 173 Query: 222 NAAWSAGLSYANGPLKLGAGYLRINRNPNAANANGALSTTDGSATITGGSQQIWAVAGRY 281 + ++ AG +Y NG + G + QI + Y Sbjct: 174 SESYHAGFNYKNGGFFVQYGGAYKRH-------------HQVQENVNIEKYQIHRLVSGY 220 Query: 282 -AFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRY-VVTPRLSLAAA 339 ++ A A L + + + TL R+ VTPR+S A Sbjct: 221 DNDALYASVAVQQQDAK------LVEENYSHNSQTEVA---ATLAYRFGNVTPRVSYAHG 271 Query: 340 YTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLAAVYQRVSGGNGIPAFNATIWT 399 + + + + ++ +V A+Y FS RT A ++A + + G G F +T Sbjct: 272 FKGSFDATNYNN-----DYDQVVVGAEYDFSKRTSALVSAGWLQ--EGKGESKFVSTA-- 322 Query: 400 LTPSANGNQVVVALGLRHRF 419 +GLRH+F Sbjct: 323 -----------GGVGLRHKF 331
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 28.6 bits (64), Expect = 0.041 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 267 PTSGAAFMVAEWLRAQRDDGRTIVFIAPDEGHRYADTVYDDAWLRGQG 314 +G + R Q +DG ++ IAP E Y+ + G Sbjct: 334 KCAGGDLIHGA--REQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENG 379
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 50.3 bits (119), Expect = 5e-08 Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 14/153 (9%) Query: 1430 GPGADASGSNSTAVGGAASASGANATALGQASNASGNNSTALGQASSASGSGSTAVGQGA 1489 G A A G +S A+G A A+ A A+G S A+G NS A+G S A G + G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 1490 SASGDGSS------------AFGQGAIASGTNSTALG--AHSTASAPNSVAIGANSVASA 1535 +A DG + A G + A NS A+G +H A+ S+AIG S Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 1536 PNTVSFGSQGHERRLTNVAPGMDGTDAANMSQL 1568 N+VS G + R+LT++A G TDA N++QL Sbjct: 182 ENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 45.3 bits (106), Expect = 2e-06 Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 1136 GPAATASGASGIAIGDTANAAATGAVAIGQTAVATGGQAVSIGVANTASGDGAVAIGDPN 1195 G A+A G IAIG TA AA AVA+G ++ATG +V+IG + A GD AV G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 1196 VATGTGAVALGANNSANGQGAVALGNANVATGTGSLALGSTSTAAG--GGSIALGTNAIA 1253 A G VA+GA S + G VA+G + A S+A+G +S A G SIA+G + Sbjct: 122 TAQKDG-VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 1254 NNANDVALGSGSV 1266 + N V++G S+ Sbjct: 180 DRENSVSIGHESL 192 Score = 41.0 bits (95), Expect = 3e-05 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 32/300 (10%) Query: 367 GGQSQAASAGAIAIGQSALATGGQAVSVGVGNTANGNGAVAIGDPNVATGTGAVALGANN 426 G + A +IAIG +A A G AV+VG G+ A G +VAIG + A G AV GA + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 427 TATGQGAVALGNADIATGQGSVALGNVSTAAGAGSVAFGSNAVANNTNDVALGSGSVTAA 486 TA G VA+G ++ + G VA G N+ A+ N VA+G S AA Sbjct: 122 TAQKDG---------------VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 487 PNPTGSATIGGTTYSFEGTNPTSVVSVGAVGAERQITNVAAGQLTATSTDAVNGSQL--- 543 N S IG + T+ + VS+G RQ+T++AAG TDAVN +QL Sbjct: 166 -NHGYSIAIGDRS----KTDRENSVSIGHESLNRQLTHLAAG---TKDTDAVNVAQLKKE 217 Query: 544 -----YSTNQAINTLSTSTSTGLSSANSSIASLSTGLASSGNLASLSTSTSTGLSSANSS 598 +TN+ L + + + +SS+ ++ S + +L + + + Sbjct: 218 IEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDV 277 Query: 599 IASLSTSTSTGLSTTNSNIGSLSTGLSTTNSTVASLSTSTSTGLSSATSSITSLSTSTSS 658 + +++ TT + ++ T A + + + A++++ + S S+ + Sbjct: 278 LNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHT 337 Score = 38.7 bits (89), Expect = 2e-04 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 356 AQALASNAIAIGGQSQAASAGAIAIGQSALATGGQAVSVGVGNTANGNGAVAIGDPNVAT 415 A A ++IAIG ++AA A+A+G ++ATG +V++G + A G+ AV G + A Sbjct: 65 ASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ 124 Query: 416 GTGAVALGANNTATGQGAVALGNADIATGQGSVALGNVSTAAG--AGSVAFGSNAVANNT 473 G VA+GA + + G VA+G A + SVA+G+ S A S+A G + + Sbjct: 125 KDG-VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRE 182 Query: 474 NDVALGSGSV 483 N V++G S+ Sbjct: 183 NSVSIGHESL 192 Score = 36.0 bits (82), Expect = 0.001 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 289 AQATGSDSIAMGSEAAASSSSTTAIGQYATASNTNATALGAGGTSAATGVIASGAGAVAL 348 A A G SIA+G+ A A+ + A+G + A+ N+ A+G + + GA + A Sbjct: 65 ASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ 124 Query: 349 GGNSTQGAQALASN-AIAIGGQSQAASAGAIAIGQSALATGGQAVSVGVGN 398 GA+A S+ +A+G S+A + ++AIG S+ S+ +G+ Sbjct: 125 KDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGD 175 Score = 31.0 bits (69), Expect = 0.041 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Query: 204 GLNNMASLAGSTAIGIANTASGAGGTAIGLYNTAAGTGSVAMGIGSQATGNGTIALGYGG 263 GLN A S AIG A+ A+G + A G SVA+G S+A G+ + G Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 264 GGTSSNATLASGSNAIAIGGDATKGAQATGSDSIAMG--SEAAASSSSTTAIGQYATASN 321 + + ++ G ++A +S+A+G S AA+ + AIG + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 322 TNATALG 328 N+ ++G Sbjct: 182 ENSVSIG 188
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 32.1 bits (72), Expect = 0.002 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 160 GLVQQLSLREIQFESLTEAMTTNSSSGMLVFHMMAALAQFERSLISERTCAGMAAARARG 219 GL Q L + E+ ++ ++ LV L + + S + AAR Sbjct: 75 GLAQ--GLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAAR--- 129 Query: 220 QILGRRPALNEKQRAQALKLLLTQ-PIKCVAKQFNVHPRTLQRLQKAHQAT 269 Q++G+ P ++ + ++ LL Q P+ Q VHP LQR+ AT Sbjct: 130 QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.2 bits (229), Expect = 4e-23 Identities = 92/377 (24%), Positives = 136/377 (36%), Gaps = 57/377 (15%) Query: 1 MKKLLIALPLAAAATTHAQSSVTLYGVLEDGVDYVSNVQGKHL----VQLASGV-TAGSR 55 MKK LIAL LAA A + VTLYG ++ GV+ +V V+ +G+ GS+ Sbjct: 1 MKKSLIALTLAALPVA-AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 WGVRGTEDLGGGLSAIFRLESGFDINSGRLGSGLAFSRNAYVGVGDAKLGTLTLGRQWDS 115 G +G EDLG GL AI+++E I G G +R +++G+ G L +GR Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWG---NRQSFIGLK-GGFGKLRVGRLNSV 115 Query: 116 IVDY--VEPFTLNGNI-GGYYFAHPNDMDNTDNGFPISNAVKYRSPTIAGFTFGGLYAFG 172 + D + P+ + G A P IS V+Y SP AG + YA Sbjct: 116 LKDTGDINPWDSKSDYLGVNKIAEPEA-------RLIS--VRYDSPEFAGLSGSVQYALN 166 Query: 173 GQPGRFSDNATFSVGANYAAGPVGFGIGYLRINNPGVSTQGYQNYPGFTNAVYGNYLDAA 232 GR ++ ++ G NY G G Y+ + V Sbjct: 167 DNAGR-HNSESYHAGFNYKNGGFFVQYGGA-----------YKRHHQVQENVNIEKYQIH 214 Query: 233 RAQKVFGVGASYQVV---QWLKLLADFTNTNFQQGSAGHDATFQNYELSALVKPTPAVTI 289 R + A Y V Q L + ++ Q AT + + + A Sbjct: 215 RLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVA--ATLAYRFGNVTPRVSYAHGF 272 Query: 290 GAGYTYTTGRDHATNAEPKYHQFNLSVEYALSKRTSVYAMGAFQKAAGDAPVAQIAGFNP 349 + T + Y Q + EY SKRTS + + Sbjct: 273 KGSFDATNYNND-------YDQVVVGAEYDFSKRTSALVSAGWLQEG-----------KG 314 Query: 350 SGNQKQAVGRAGIRHVF 366 G G+RH F Sbjct: 315 ESKFVSTAGGVGLRHKF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 8e-18 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 13/163 (7%) Query: 3 IYLIEDDEIQAQYYQSMLVEHGWQVKLLLDGERAFREIQRMPPDLIILDRRLPDLDGLEV 62 I + +DD L G+ V++ + +R I DL++ D +PD + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 LMWVRKNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATET 122 L ++K ++PVL+++ + A E GA DY+ KP E + + RA Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI----GIIGRALAE 121 Query: 123 RTLSELIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLAR 165 R E + S EI +LAR Sbjct: 122 PKR---------RPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 0.005 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 895 LAPDDADAVLLRAELALDTGDFDEALSQFERLREQRPDAPESYANLIPALAALERRDDAI 954 ++ D + + A +G +++A F+ L + L A+ + D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 955 AALQRALELNSKHPGALNNGVQFYLRTQQYDKA---MELAQRYVGAHGELASAHTMCGLV 1011 + ++ K P + + L+ + +A + LAQ + E T + Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM 150 Query: 1012 YHNLKA 1017 +K Sbjct: 151 LEAIKL 156
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 274 bits (701), Expect = 5e-89 Identities = 94/439 (21%), Positives = 204/439 (46%), Gaps = 14/439 (3%) Query: 43 SALGLEEASIAPARRAAALIPTVMLALLIVLVLWATFFKIDIIAAGQGKVIPSTTVQQLS 102 + L L E ++ R A ++ L++ + + +++I+A GK+ S +++ Sbjct: 44 AHLELIETPVSRRPRLVAYF---IMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIK 100 Query: 103 TLEGGIVRELLVREGQIVKKGQPLVRLDPVVAQGAVTEQAATREGLMASIARLQAEADGK 162 +E IV+E++V+EG+ V+KG L++L + A+ + ++ R Q + Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI 160 Query: 163 ----------ATPLYPAGLKPEIVSEEEHVRAQRAEALNSTIEVLQQQRAAKQAEAADYR 212 Y + E V + ++ + + K+AE Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 213 GRIPQYVNNQHLLDDQIQRMLPLVGVGSVAPNEITNLQRERGNLAAQIITTREGAAQASA 272 RI +Y N + ++ L+ ++A + + + + ++ + Q + Sbjct: 221 ARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES 280 Query: 273 QIAEASHKIEEKISTFRSEAREELARKQVQLQALEGTLSGKQDILDRTLIRSPVNGIVKT 332 +I A + + F++E ++L + + L L+ ++ ++IR+PV+ V+ Sbjct: 281 EILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ 340 Query: 333 LYITTIGGVASPGKSVIDIVPTNDSLLIEARIQPQDIAYIRVGDDAKVRITAFDSGALGS 392 L + T GGV + ++++ IVP +D+L + A +Q +DI +I VG +A +++ AF G Sbjct: 341 LKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGY 400 Query: 393 LDAKVELISPDSQADERSGSLYYKVQVRTHSSVVATQVGDLNILPGMVADVDVITGRRTI 452 L KV+ I+ D+ D+R G L + V + + ++T ++ + GM ++ TG R++ Sbjct: 401 LVGKVKNINLDAIEDQRLG-LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Query: 453 MSYILRPIVRGMSRAMSER 471 +SY+L P+ ++ ++ ER Sbjct: 460 ISYLLSPLEESVTESLRER 478
>INTIMIN#Intimin signature. Length = 939 Score = 54.3 bits (130), Expect = 8e-09 Identities = 47/230 (20%), Positives = 78/230 (33%), Gaps = 14/230 (6%) Query: 902 ADGTHSLTASAVDLAGNTS-PASSTLPVRVDTTTTLPSLTLSSSSDTFGAGTSGTNHDNI 960 + +TA A D GN+S T+ V + ++D A GT + I Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGT--EAI 578 Query: 961 TSATQPTINGTAEAGSYVQLYDVTGGTTVSVGEAVAGSNGTWTTQLVSPLSGSASGVSHT 1020 T NG A+A V V+G +S A +G T L S G Sbjct: 579 TYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQ------- 631 Query: 1021 LVAVGVDPAGNTSAVSGPDVLVIDTSTPSPSTPALTPADQFNGNPST-TLNARPTLTGTA 1079 V V A TSA++ V+ +D + S + T + Sbjct: 632 -VVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKP 690 Query: 1080 EAGASVSLTDSGVVVGVGVA--DSTGHWTIQTSALFAGGHTITATAVDIA 1127 + V+ T + + D+ G+ + ++ G ++A D+A Sbjct: 691 VSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVA 740 Score = 45.8 bits (108), Expect = 3e-06 Identities = 63/332 (18%), Positives = 108/332 (32%), Gaps = 27/332 (8%) Query: 798 GADGRYQITAQQVDIAGNTSPSSSVTAMTLDTSEPAPVNLHLVDDTFGQGTAGTS--SDN 855 G Y++TA+ D GN+S + +T L S V+ V D T+ + ++ Sbjct: 520 GGSNVYKVTARAYDRNGNSSNNVLLTITVL--SNGQVVDQVGVTDFTADKTSAKADGTEA 577 Query: 856 LTKDSRVTISGTASAGD--VVTLMDGATSVGQVTADASGNWTIQTASLADGTHSLTASAV 913 +T + V +G A A ++ G + +A+ +G+ T +L + Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKA-TVTLKSDKPGQVVVSA 636 Query: 914 DLAGNTSPASSTLPVRVDTTTTLPSLTLSSSSDTFGAGTSGTNHDNITSATQPTINGTAE 973 A TS ++ + VD T + + T A D IT + Sbjct: 637 KTAEMTSALNANAVIFVDQTKA-SITEIKADKTTAVAN----GQDAITYTVKVMKGDKPV 691 Query: 974 AGSYVQLYDVTGGTTVSVGEAVAGSNGTWTTQLVSPLSGSASGVSHTLVAVGVDPAGNTS 1033 + V T +S +NG L S G + VS + V VD Sbjct: 692 SNQEVTF--TTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL-VSARVSDVAVDVKAPE- 747 Query: 1034 AVSGPDVLVIDTSTPSPSTPALTPADQFNGNPSTTLNARPTLTGTAEAGASVSLTDSGVV 1093 V L ID + P+ L + + + Sbjct: 748 -VEFFTTLTIDDGNIEIVGTGVK-----GKLPTVWLQYGQVNLKASGGNGKYTWRSANPA 801 Query: 1094 VGVGVADSTGHWTIQTSALFAGGHTITATAVD 1125 + V S+G T++ G TI+ + D Sbjct: 802 IAS-VDASSGQVTLK----EKGTTTISVISSD 828 Score = 44.7 bits (105), Expect = 6e-06 Identities = 62/362 (17%), Positives = 110/362 (30%), Gaps = 39/362 (10%) Query: 359 GHTVSTIADSNGNYSVQAPGTLAEGNNVFTVQ--AVDKAGNTSGTAQQNVTLDTVAATLP 416 G + + S +Y P + G+NV+ V A D+ GN+S +T+ L Sbjct: 497 GQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITV------LS 550 Query: 417 APQL-------DHGSDTGASNSDGITRATQPVLTGGGAEPNALVTVYADGVSIGQ----- 464 Q+ D +D ++ +DG T A V V + VS Sbjct: 551 NGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 465 -ATADSLGHYTIHSGVMADGTHQITARQIDIAGNTSALSGAALVTIDTSEPAPANLKLVD 523 A + G T+ + A TSAL+ A++ +D ++ + +K Sbjct: 611 SANTNGSGKATV---TLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADK 667 Query: 524 DTFGLHTAGTPSDGLTKDSRVTISGTASAGDVVTLMD--GATSVGQVTADASGNWTIQTA 581 T D +T +V + VT G S D +G + Sbjct: 668 TTA----VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT 723 Query: 582 SLADGTHSLTASAVDLAGNTSPASSTLPVTVDTINPPPALTLSPLSDTFGSGTSGTNHDN 641 S T ++ S + + + + + G+G G Sbjct: 724 -------STTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNI-EIVGTGVKGKLPTV 775 Query: 642 ITSATLPTFNGTAAAGSYVQLYDVTGGTTVSVGSAVADSSGGWTTTLTSPLSGSASGVSH 701 + G Y +V S TTT++ +S ++ Sbjct: 776 WLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISV-ISSDNQTATY 834 Query: 702 TL 703 T+ Sbjct: 835 TI 836 Score = 39.3 bits (91), Expect = 3e-04 Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 20/227 (8%) Query: 1535 ADGTYTFSAVAVDVAGNTSNPGVPVQVVVDTHAAAPSITLGTPYDTFGTGTSGTNSDELT 1594 Y +A A D GN+SN V + + V ++ T + T ++ +T Sbjct: 521 GSNVYKVTARAYDRNGNSSNN-VLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAIT 579 Query: 1595 RNTIPYMYGVAEPGARV--TVVENGNTIGTVNA-DSSTGSYSIQIPPATVDGTYTFQAMQ 1651 GVA+ V +V + +A + +G ++ + Sbjct: 580 YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVV----S 635 Query: 1652 VDVAGNTSAYSAPNYVTIDTVAATPT------LTALTPASDTFGVGTAGNNHD------N 1699 A TSA +A + +D A+ T TA+ D D Sbjct: 636 AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQE 695 Query: 1700 LTNASTIGIMGTAAEAGAALDLYQITVSGSITTSTSVAHTTAGAGGS 1746 +T +T+G + + E ++T++ + + V+ + Sbjct: 696 VTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVD 742
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (284), Expect = 2e-31 Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 12/180 (6%) Query: 114 QYQVRF--LGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELP 171 Q+ + R ++ R+ V+A AP +V L Sbjct: 163 QWTNNIGDAHTIGTRP-DNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK---HFTLK 218 Query: 172 TDTLFAFDKGGFEDISADGRRQLGDLVASIKAKILSINHLVVTGYTDRLGSDEHNARLSS 231 +D LF F+K + +G+ L L + + +VV GYTDR+GSD +N LS Sbjct: 219 SDVLFNFNK---ATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 232 ERARTVADYMIAEGIPAAKITAVGRGAADPVV--VCNNGEQ-PELIRCLQKNRRVEIRIK 288 RA++V DY+I++GIPA KI+A G G ++PV C+N +Q LI CL +RRVEI +K Sbjct: 276 RRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 94.9 bits (236), Expect = 4e-24 Identities = 76/349 (21%), Positives = 122/349 (34%), Gaps = 52/349 (14%) Query: 14 NILAGCLLPGIATAQSSVTLYGVIDEGIDYVNNSGGQHLW--RMRDGTYDGMYGSRWGLK 71 +++A L A + VTLYG I G++ + + GT GS+ G K Sbjct: 4 SLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFK 63 Query: 72 GSEDLGGGLSALFKLEAGFSLENGQMRQGGREFGRQAYVGLSKTDLGTVTFGRQYDSVVD 131 G EDLG GL A++++E S+ G RQ+++GL K G + GR + D Sbjct: 64 GQEDLGNGLKAIWQVEQKASIAGTDSGWG----NRQSFIGL-KGGFGKLRVGRLNSVLKD 118 Query: 132 F--VQPVTAVGQFGGPFVRGGDIDNTDNSFRVDNSIKYASPSFGGFTFGGMYSFTNSNAP 189 + P + + G I + S++Y SP F G + Y+ ++ Sbjct: 119 TGDINPWDSKSDYLG----VNKIAEPEARL---ISVRYDSPEFAGLSGSVQYALNDNAGR 171 Query: 190 GLGTTGMWSLGAAYSHGGFNAGAAYFYAKNPAARFTDGNFIGNTTGAAIGASGPFSYVGA 249 + + G Y +GGF Y ++ + + I + + Sbjct: 172 HNSES--YHAGFNYKNGGFFVQYGGAYKRH--HQVQENVNIEKYQIHRLVSG-------- 219 Query: 250 PRNERIMGIGADYAFGSATAGIDYTNTKFDDANGTTSSVTFSNYEVWGQY-----KVTPA 304 A YA + A ++ S EV VTP Sbjct: 220 ------YDNDALYA---SVAVQQQDAKLVEENYSHN-----SQTEVAATLAYRFGNVTPR 265 Query: 305 ATLGAAYVYTDGK-VNYNGARPKYHQVSLMGSYSVSKRTSFYAMAGFQQ 352 +Y + + Y QV + Y SKRTS AG+ Q Sbjct: 266 ----VSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQ 310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 6e-18 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 1/146 (0%) Query: 854 TVLIAEDNLLNRSLLLDQLTTLGVRVIEAKNGEEALALLLKEPVDVVMTDIDMPMMDGFQ 913 T+L+A+D+ R++L L+ G V N + D+V+TD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 914 LLAEMRRLGMTMPVYAVSASARPEDVAEGRARGFTDYLAKPVSLERLETVVRACCSAP-A 972 LL +++ +PV +SA + +G DYL KP L L ++ + P Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 973 GARADEDAQDELPGLPDVPPAYASAF 998 ED + L A + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIY 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 2e-07 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 10 KVVVADDHPIVLRAVTDYVNSLPGFHVVASVSSGDALLSAMREQEVNLVVTDFTMHQAND 69 ++VADD + + ++ G+ V S+ L + + +LVVTD M Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVM----P 58 Query: 70 DKDGLRLISHLMRAYERTPIIVFT 93 D++ L+ + +A P++V + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMS 82
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 50.7 bits (120), Expect = 2e-08 Identities = 52/159 (32%), Positives = 79/159 (49%) Query: 817 ATGNNASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGS 876 A G NASA G S A GA A A+ + A GA S A+G S A G + A GD + G+ Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 877 NAVASGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGSVA 936 + A G S + + + + ++A + ++ A+ S+A+G S Sbjct: 120 ASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 937 SEDNTVSVGSAGSERRITNVAAGVNATDAVNVGQLNSAV 975 +N+VS+G R++T++AAG TDAVNV QL + Sbjct: 180 DRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEI 218 Score = 41.4 bits (96), Expect = 2e-05 Identities = 71/331 (21%), Positives = 122/331 (36%), Gaps = 5/331 (1%) Query: 444 ATASGTNSTANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTAS 503 A A + N T S + A G A G +++A G +S A G + A+ Sbjct: 23 AFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAA 82 Query: 504 GDNSTASGTNASATGENSTASGTNASATGENSTATGTASTASGSNSTANGTNSTASGENS 563 + A G + ATG NS A G + A G+++ G ASTA ST+ + Sbjct: 83 KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVA 142 Query: 564 TATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANG 623 + + A S + + ++ A+ S A G + ENS + G +S A G Sbjct: 143 VGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Query: 624 TNST-----ASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTAS 678 T T A + ++ A +S+ G + + S + Sbjct: 203 TKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAET 262 Query: 679 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGNNSTASGTNASATGENSTATGTDS 738 NA + + + SNS A T TA + ++ + T E++ ++ Sbjct: 263 LENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEA 322 Query: 739 AASGTNSTANGTNSTASGDNSTASGTNASAT 769 AS + ++ T NS T +++T Sbjct: 323 LASANVYADSKSSHTLKTANSYTDVTVSNST 353 Score = 40.7 bits (94), Expect = 3e-05 Identities = 83/329 (25%), Positives = 126/329 (38%), Gaps = 6/329 (1%) Query: 524 SGTNASATGENSTATGTASTASGSNSTANGTNSTASGENSTATGTDSTASGSNSTANGTN 583 S A A + TA S + A G A G +++A G +S A G Sbjct: 19 SSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGAT 78 Query: 584 STASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASAT 643 + A+ + A G + ATG NS A G S A G ++ G STA D A G AS T Sbjct: 79 AEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD-GVAIGARAS-T 136 Query: 644 GENSTATGTDSTASGSNSTANGANSTASGDN--STASGTNASATGENSTATGTDSTASGS 701 + A G +S A NS A G +S + ++ S A G + ENS + G +S Sbjct: 137 SDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQL 196 Query: 702 NSTANGTNSTASGNNSTASGTNASATGENSTATGTDSAASGTNSTANGTNSTASGDNSTA 761 A GT T + N A + +T + + N+ A+ +S+ G + Sbjct: 197 THLAAGTKDTDAVN--VAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNY 254 Query: 762 SGTNASATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAAATGAGATATGNN 821 + + ++ T EN+ A + N +NS A TA + + Sbjct: 255 TDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEH 314 Query: 822 ASASGTSSTAGGANAIASGENSTANGANS 850 A+ + A S + T ANS Sbjct: 315 ANKKSAEALASANVYADSKSSHTLKTANS 343 Score = 39.9 bits (92), Expect = 5e-05 Identities = 75/315 (23%), Positives = 120/315 (38%), Gaps = 12/315 (3%) Query: 425 VSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASASGENSTATGT 484 +S N A G A G N++A G +S A G + A+ A A G S ATG Sbjct: 39 ISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGV 98 Query: 485 DSTASGSNSTANGTNSTASGDNSTASGTNA-----SATGENSTASGTNASATGENSTATG 539 +S A G S A G ++ G STA ++T + A G N+ A +NS A G Sbjct: 99 NSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIG 158 Query: 540 TASTASGSN--STANGTNSTASGENSTATGTDSTASGSNSTANGTNST-----ASGDNST 592 +S + ++ S A G S ENS + G +S A GT T A Sbjct: 159 HSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEI 218 Query: 593 ASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGT 652 + ++ A +S+ G + + S + NA + Sbjct: 219 EKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVL 278 Query: 653 DSTASGSNSTANGANSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTA 712 + + SNS A TA ++ + T E++ ++ AS + + ++ T Sbjct: 279 NMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTL 338 Query: 713 SGNNSTASGTNASAT 727 NS T +++T Sbjct: 339 KTANSYTDVTVSNST 353 Score = 38.0 bits (87), Expect = 2e-04 Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 39/425 (9%) Query: 635 ASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGTNASATGENSTATGT 694 A G NASA G +S A G + A+ + A GA S A+G NS A G + A G+++ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 695 DSTASGSNSTANGTNSTASGNNSTASGTNASATGENSTATGTDSAASGTNSTANGTNSTA 754 STA ST+ + A G N+ A +NS A G S + AN S A Sbjct: 120 ASTAQKDGVAIGARASTS--DTGVAVGFNSKADAKNSVAIGHSSHVA-----ANHGYSIA 172 Query: 755 SGDNSTASGTNASATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAAATGAG 814 GD S N+ + G S A+G+ T + N T EN A Sbjct: 173 IGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDT-DAVNVAQLKKEIEKTQENTNKRSAE 231 Query: 815 ATATGNNASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTAL 874 A N + + +SS G AN N +S ++ +A E+ A + D Sbjct: 232 LLANANAYADNKSSSVLGIAN----------NYTDSKSAETLENARKEAFAQSKDVLNMA 281 Query: 875 GSNAVASGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGS 934 +++ + ++ T S A ++ +A + A+ + S S + Sbjct: 282 KAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTA 341 Query: 935 VASEDNTVSVGSAGSERRITNVAAGVNATDAVNVGQLNSAVSGIRNQMDGMQGQIDTLAR 994 + D TVS + + R + + N++D + ++D Sbjct: 342 NSYTDVTVSNSTKKAIRESNQYT--------------DHKFRQLDNRLDKLDTRVD---- 383 Query: 995 DAYSGIAAATALTMIPDVDPGKTLAVGIGTANFKGYQASALGATARITQNLKVKTGVSYS 1054 G+A++ AL + + G ++ QA A+G+ R+ +N+ +K GV+Y+ Sbjct: 384 ---KGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNENVALKAGVAYA 440 Query: 1055 GSNYV 1059 GS+ V Sbjct: 441 GSSDV 445 Score = 35.6 bits (81), Expect = 0.001 Identities = 40/119 (33%), Positives = 53/119 (44%) Query: 821 NASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGSNAVA 880 + SA+ S+ A A + N S N A G A G NA A Sbjct: 8 SVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASA 67 Query: 881 SGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGSVASED 939 G+ S+A GA + A+ + A G GS ATG SVAIG + A G ++V G S A +D Sbjct: 68 KGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD 126 Score = 30.6 bits (68), Expect = 0.037 Identities = 74/299 (24%), Positives = 109/299 (36%), Gaps = 12/299 (4%) Query: 420 GLQGSVSANTGTASGDNSTASGDNATASGTNSTANGTNSTASGDNSTASGTNASASGENS 479 GL S A G + A+ A A G S A G NS A G S A G +A G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 480 TATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTASGTNASATGENSTATG 539 TA D A G+ ++ + T A G NS A N+ A G +S + +A S A G Sbjct: 122 TAQ-KDGVAIGARASTSDT-GVAVGFNSKADAKNSVAIGHSS-----HVAANHGYSIAIG 174 Query: 540 TASTASGSNSTANGTNSTASGENSTATGTDST-----ASGSNSTANGTNSTASGDNSTAS 594 S NS + G S A GT T A +T + Sbjct: 175 DRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLA 234 Query: 595 GTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDS 654 NA A ++S+ G + + S S N+ + N + NS A T Sbjct: 235 NANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLE 294 Query: 655 TASGSNSTANGANSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTAS 713 TA ++ + +++ A A+ + + T +NS + T S ++ Sbjct: 295 TAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNST 353
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 34.6 bits (79), Expect = 2e-04 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 18/135 (13%) Query: 198 VPLGDVRVDRFSGIGSTFADRNFSIGMTCTQPAGTYDIALTFSATADSSGAPGVLAITQG 257 V GD+ + G ++F++ M C GT + +T S+G G + Sbjct: 46 VNWGDIEIQNLVQSGGN--QKDFTVDMNCPYSLGTMKVTIT------SNGQTGNSILVPN 97 Query: 258 ASSASGVGIQLLMN-------GSPVTFGAVLDAGSATA-GATLTIPMTARYYQTGSV--V 307 S+ASG G+ + + G+ VT G+ + G T I + A+ G++ + Sbjct: 98 TSTASGDGLLIYLYNSNNSGIGNAVTLGSQVTPGKITGTAPARKITLYAKLGYKGNMQSL 157 Query: 308 TPGAANGIATFAVSY 322 G + AT SY Sbjct: 158 QAGTFSATATLVASY 172
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 782 bits (2021), Expect = 0.0 Identities = 290/861 (33%), Positives = 445/861 (51%), Gaps = 43/861 (4%) Query: 2 LAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEA 61 L A + L F+P FL Q ADLS + + PG Y V +++N Sbjct: 30 LFVACAFAAQAPLSSAELYFNPRFLA-DDPQAVADLSRFENGQELPPGTYRVDIYLNNGY 88 Query: 62 IERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHA 121 + RD+TF D + +PCL+ G++ A+ + + +DACV + + A Sbjct: 89 MATRDVTFN---TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDA 145 Query: 122 RTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASAR 181 + D Q RLN+T+PQA + RARG + P WD GI+A LL+Y S Sbjct: 146 TAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNR---IGG 202 Query: 182 SRTTLYAGLRGAVNLGAWRLSHTSSF-----LHGLDGRNRFQIVNTFVQRDIAGWNSRLT 236 + Y L+ +N+GAWRL +++ +N++Q +NT+++RDI SRLT Sbjct: 203 NSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLT 262 Query: 237 AGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYS 296 G+G T +IFDG F G QL +D+ MLPDS +G+AP +HG+A+ AQVTI+QNG+ IY+ Sbjct: 263 LGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYN 322 Query: 297 TYVPPGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQ 356 + VPPGPFTI+D+Y +SG+L+VTI EADG FT PYS+VP+L R+G RY++TAG+ Sbjct: 323 STVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGE 382 Query: 357 YR-DGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVT 415 YR P F +TL GL +++YGG A Y++ GIGKN+G++GA+S+D+T Sbjct: 383 YRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMT 442 Query: 416 HARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSE 475 A S L D S G + R LY K++ GT+ +L+ YRYST+GY +FAD R Sbjct: 443 QANS--TLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY 500 Query: 476 PAAL------------------GAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARST 517 KR +L+ TV Q+LGR ++Y + + QTYWG++ Sbjct: 501 NIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDE 560 Query: 518 VYQLGHSGNWGRASYGLYAAYSKGSGVPSSWN-VSLSLSMPLEVFFGGARVRAPAGGSAN 576 +Q G + + ++ L + +K + ++L++++P + A+ Sbjct: 561 QFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQW--RHAS 618 Query: 577 VSYFASRNNENHVNQQMTASGSSSEQ-RLNYSVGVAHS----SESDVSGSVSASYLAPFG 631 SY S + + G+ E L+YSV ++ S +G + +Y +G Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678 Query: 632 RYDASIGSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVQGVRFEMHPGVS 691 + Q + +GG+L H GV QPL +TV +V P + + E GV Sbjct: 679 NANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVR 738 Query: 692 TDRAGEAVIPRLNPYRVNRIVVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRA 751 TD G AV+P YR NR+ +D + +V++ N V+ VVPTR A+V+ F + VG++ Sbjct: 739 TDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKL 798 Query: 752 LFTLMRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVVRWGAARQNRCR 811 L TL + P GA ++ Q G+V +G+ +++G+P A G V+WG C Sbjct: 799 LMTL-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA-GKVQVKWGEEENAHCV 856 Query: 812 VNYALPGKAAIGAYLAVEAIC 832 NY LP ++ + A C Sbjct: 857 ANYQLPPESQQQLLTQLSAEC 877
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.2 bits (109), Expect = 3e-07 Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 14/214 (6%) Query: 229 ACRLSLRRAKSRRRV----ARARRRRAQRAALREPMGRHRAQPRHRQRRDQQDRVQRSGN 284 A + LR R + R + + P P ++ RV + Sbjct: 966 AWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPV 1025 Query: 285 DPQLQADREHHQLDRAAAVHQHAHERRLRAVDAAQSRAR---VAAGEFRRHAADEKRGEP 341 P A A Q + DA ++ A+ VA A+ + E Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 342 APGRARVERGERC-LKAHADEEERNQHEIGEAGEARVPQLAQVVAPREVGGRDERAERAV 400 A + + + K A E+ + ++ VP++ V+P+ +++ Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK----QEQSETVQP 1141 Query: 401 KAEPRRGPRRQQHVAERADQHGGAAA--GPARSI 432 +AEP R ++ E Q A PA+ Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.8 bits (69), Expect = 0.008 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 181 DYVIADPEPRGGRLAME-RGVTWAARRHDHRF--GAHYPWTLRLTPPQDGAPASVEIDT 236 DY I +PEP G++ + G AR D F G Y +T+R DG VE D+ Sbjct: 472 DYCITNPEPASGKMWIAGDGGNQPARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDS 530
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 3e-04 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 12 ATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGL-KRGRN 70 ++ ++A+ AG + ++ + ++++ S E + R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 71 RLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERR 117 L+ +L + +T ++ + C +G M ++ A L +E Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESY 138
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.0 bits (70), Expect = 0.009 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%) Query: 244 IGVYGFVLWLPSIVKNGSALGMVATGWLSALP-YLAATIAMLAASWASDRLGSRKGFVWP 302 V GFV +P ++K+ L G + P ++ I DR G Sbjct: 270 GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIG 329 Query: 303 FLLIGAAAFAASYTLGSTHFWLSYALLVVAGAAMYAPYGPFFAIVPELLPKNVAGGAMAL 362 + + AS+ L +T ++++ ++ V G + IV L + AG M+L Sbjct: 330 VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKT-VISTIVSSSLKQQEAGAGMSL 388 Query: 363 INSMGALGSFVGSYAVGYL 381 +N L G VG L Sbjct: 389 LNFTSFLSEGTGIAIVGGL 407 Score = 30.6 bits (69), Expect = 0.013 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%) Query: 35 AAAGINQDLGISKGLSSLIGALFFLGYFFFQIPGAIYAERRSVKTLVFWSLVLWGACASL 94 + I D ++ + F L + +++ +K L+ + +++ S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCF-GSV 94 Query: 95 TGVV--SNIPSLMAIRFLLGVVEAAVMPAML-IFISNWFTKRERSRANTFLILGNPVTVL 151 G V S L+ RF+ G AA PA++ + ++ + K R +A + + Sbjct: 95 IGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEG 153 Query: 152 WMSVVSGYLVHEFGWRHMFV 171 + G + H W ++ + Sbjct: 154 VGPAIGGMIAHYIHWSYLLL 173 Score = 30.6 bits (69), Expect = 0.014 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 268 TGWLSALPYLAATIAMLAASWASDRLGSRKGFVWPFLLIGAAAFAASYTLGSTHF-WLSY 326 T W++ L +I SD+LG ++ ++ ++ + +G + F L Sbjct: 51 TNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIM 108 Query: 327 ALLVVA-GAAMYAPYGPFFAIVPELLPKNVAGGAMALINSMGALGSFVG 374 A + GAA + +V +PK G A LI S+ A+G VG Sbjct: 109 ARFIQGAGAAAFPAL--VMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 26.6 bits (59), Expect = 0.046 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Query: 121 LKMIGEHGVQVALHTDVV-----VDVTVNVIGD 148 L + E+ VQV +HTD + V+ T+ I Sbjct: 235 LSVADEYDVQVMIHTDTLNESGFVEDTIAAIKG 267
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.8 bits (64), Expect = 0.033 Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 2/131 (1%) Query: 85 LPASDVPVSDVPVSDVPVSDMPVSDVPVSDMPVSDMPVSDVPVSDVPVSDMPVSDVPVSD 144 + A + S V ++P P+S V+ + P V + P+ + Sbjct: 28 VVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEP--EPIPE 85 Query: 145 APEQDTPSQDMRAPNKPAVDRPPEAKPRFGADARGGARAGRWFARPGSRGPTLDRPGPGP 204 P++ + P +P + + D + + Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145 Query: 205 RAAALPGLGWG 215 + + + G Sbjct: 146 TSKPVTSVASG 156
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 3e-05 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAQALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + E A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.009 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 51 EAAAAGVEASLSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRL-------KH 103 +A+ G L K E+ I+ + + +R L + + + Sbjct: 92 KASEKGAYDYLPKP--FDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149 Query: 104 LDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 152 + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 4e-07 Identities = 76/334 (22%), Positives = 117/334 (35%), Gaps = 13/334 (3%) Query: 95 ALALLLLVP-LGDLVDR--RRLMLVQSLALAATLIAV-GFASASAVLIAGMLGTGLLGTA 150 AL P LG L DR RR +L+ SLA AA A+ A VL G + G+ G Sbjct: 53 ALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT 112 Query: 151 MTQGLVSYAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVAGWRGVYFLSAATM 210 +Y A + ER R G G++ VL G +G + + AA + Sbjct: 113 GA-VAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFA--AAAL 169 Query: 211 LALAALLARKLPALAPASPRIGYPRLIASLFGLLRDERVLQIRGMLAMLMFAA--FNIFW 268 L L L + R R + R R + + L + F Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 269 SALALPLSAPPYTLSHTAIG-AFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLAS 327 +AL + + T IG + G L + A A G+ + + + Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 328 WLPLAFMPMSLWALVLGIVLLDAGGQAIHVTNQSMIFRARPDAHSRLIAAYMLFYSVGSG 387 L W +VLL +GG + + + + +L + S+ S Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSI 349 Query: 388 LGAIASTAVYATH--GWRG-VCMLGAAVSAAALI 418 +G + TA+YA W G + GAA+ L Sbjct: 350 VGPLLFTAIYAASITTWNGWAWIAGAALYLLCLP 383
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 32.1 bits (73), Expect = 0.012 Identities = 36/160 (22%), Positives = 49/160 (30%), Gaps = 16/160 (10%) Query: 217 AHSQAQLAQLEGRVNLYRQYQAKLREREFLATEAIPVLTWYEERQDAAIKLRELHRQRLH 276 A + E RQ + LRER + ++ + LR R Sbjct: 11 AQGKKCRGTQEADSA--RQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLSTS 68 Query: 277 Q-AQLKRQLAADSAMLLQLLEQKRIAAE------------RVRQFEAE-RDAALALQRQA 322 A L RQLA A + L E A+ VR E A A++ Sbjct: 69 DLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP 128 Query: 323 RDVERPVEDLVKHAEELQTLATVETNAADLAEHLRVLEQR 362 ER +V E L V AD E + + R Sbjct: 129 GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSR 168
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.5 bits (73), Expect = 0.006 Identities = 20/92 (21%), Positives = 27/92 (29%) Query: 379 AAVVVVRPICIGRRGGRAARDRFRRRAARGRGAAAREGAGGRRARRVEARCAAGHGAARG 438 A + + + G G A RF R G AA ++ R A Sbjct: 154 AEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKAS 213 Query: 439 RADRAGRVAREHRAGRTRRRVGRARRAGRRER 470 A ARE A +R+ R R Sbjct: 214 IEAAAANKAREQAAAEAKRKAEEQARQQAAIR 245
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.012 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 4/92 (4%) Query: 104 AAVRRREKAQAADVRG--ASKRAAQPAMAPPAAARIEPDVSRVSTAPGAPAAASAARAAP 161 A V + + V + K+ + P A E D + P + +A P Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 162 AAVNAGPAAATPAAREDAAPSALGDAARPPSQ 193 A + E + P Sbjct: 1172 AKET--SSNVEQPVTESTTVNTGNSVVENPEN 1201
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 56.6 bits (136), Expect = 6e-10 Identities = 59/344 (17%), Positives = 94/344 (27%), Gaps = 37/344 (10%) Query: 706 TVDAAEAPRGERRERGERRKPAPHVATLETVNRGESAHAETAEKPLYAPGAEAGVDADSN 765 TVD R G P V R ++ P D S Sbjct: 961 TVDLGAWKYKLRNVNGRYDLYNPEVE-----KRNQTVDTTNITTP-----NNIQADVPSV 1010 Query: 766 ARDGEERRRRRRGRRGGRREREDEVAGAVQAAEGSEGVTAEAEALEHAEHAQQRVAPVAN 825 + EE R + +E E++ +E E Sbjct: 1011 PSNNEEIARVDEAPV----PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 826 QAPEHAAQ-AGAGVAAAAAATVAAEAIAHVESGAKVEPQPAAEASAG-DTEQAEAVPARS 883 + + A A A +E + K E A +TE+ + VP + Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 884 IEAPAQAASTGQAEAVQAAPAAPAHVTPATADVAREPAAPAETASAETTPAEIPPAEAAP 943 + + Q+E VQ P A +EP + T + PA+ + Sbjct: 1127 SQVSPKQE---QSETVQ--PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 944 AEAPAAEASEVAASAVASAPAPAAEPAPAAEPHRPAPVSAAPASAAPAEADAAREPAAVA 1003 S + + P +P + S P + R +V Sbjct: 1182 PV----TESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP------KNRHRRSVRSVP 1231 Query: 1004 EPHVPAAAATPTPASVA------TTPGASLDTALAAAGLVWVNT 1041 PA ++ ++VA T A L A A A V +N Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNV 1275 Score = 47.4 bits (112), Expect = 4e-07 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 20/258 (7%) Query: 524 PRQEAAVKGITPERPAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPA 583 P E + + + +A P + P++ + A VP Sbjct: 983 PEVEKR------NQTVDTTNITTPNNIQADVP--SVPSNNEEIAR-------VDEAPVPP 1027 Query: 584 PAPAAQ-ETAARPARERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGR 642 PAPA ET A + + EK E+ A+ + + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 643 AQAPRAEREGKETREPREGREARGGRDNREGREARETREAREPREQREPREAREQRE-AR 701 + + E + ET+E + + E + ++ +Q + + Q E AR Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 702 ERAETVDAAEAPRGERRERGE---RRKPAPHVATLETVNRGESAHAETAEKPLYAPGAEA 758 E TV+ E ++ + +V T + + E P A Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 759 GVDADSNARDGEERRRRR 776 +S + + + R RR Sbjct: 1208 QPTVNSESSNKPKNRHRR 1225 Score = 46.2 bits (109), Expect = 9e-07 Identities = 39/259 (15%), Positives = 70/259 (27%), Gaps = 24/259 (9%) Query: 516 SKRAEET--KPRQEAAVKGITPERPAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGL 573 S+ E +QE+ + + A R+ A EA + V A Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT------------- 1080 Query: 574 FGAQPAAVPAPAPAAQETAARPARERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGR 633 Q V +ET +E A + + E+ + + + +Q Sbjct: 1081 ---QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 634 D-QAAAGGGRAQAPR---AEREGKETREPREGREARGGRDNREGREARETREAREPREQR 689 Q A R P E + + + A+ N E T Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 690 EPREAREQREARERAETVDAAEAPRGERRERGERRKPAPHVATLETVNRGESAHAETAEK 749 P + +++ P+ R AT + +R A + Sbjct: 1198 NPEN--TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTST 1255 Query: 750 PLYAPGAEAGVDADSNARD 768 A ++A A A + Sbjct: 1256 NTNAVLSDARAKAQFVALN 1274 Score = 32.7 bits (74), Expect = 0.010 Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 13/152 (8%) Query: 502 AEEAARELEAETGYSKRAEETKPRQEAAVKGITPERPAPSPAPQRQSAPEAAAPVAAAPA 561 E+A E E K + P+QE E P P R++ P + Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQE------QSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 562 SGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPARERAERGERGEKAERGERGG----D 617 + + + V P + + + Sbjct: 1163 NTTADTEQPA---KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 618 RNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAE 649 +NRHRR + + R+ + Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 109 bits (273), Expect = 8e-35 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Query: 2 TKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVG 61 K +L+A++A +L KD+ AV + A+S L+KG ++++ GFG+F + R AR G Sbjct: 3 NKQDLIAKVAEA-TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKSGEKVQVPEKHVPHFKPGKELRERV 90 RNP++GE++++ VP FK GK L++ V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 168 bits (426), Expect = 4e-53 Identities = 75/146 (51%), Positives = 99/146 (67%), Gaps = 3/146 (2%) Query: 74 AQAPAPAPVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDELAAKIQGMNVE--V 131 AP AP AP + ++ T ++D LF+F+KA LKP G+ LD+L +++ ++ + Sbjct: 195 EAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGS 254 Query: 132 VVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKVYTEGKGKRNPVTGNTC-KQ 190 VV GYTDRIGSD YN LS RRAQ+V YL+SKG+PA+K+ G G+ NPVTGNTC Sbjct: 255 VVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNV 314 Query: 191 KNRKQLIACLAPDRRVEVEVVGTQEV 216 K R LI CLAPDRRVE+EV G ++V Sbjct: 315 KQRAALIDCLAPDRRVEIEVKGIKDV 340
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 51.1 bits (122), Expect = 1e-09 Identities = 18/103 (17%), Positives = 37/103 (35%) Query: 13 MESAFDRAFAAHRAGRLDDAEHGYRAVLAANPADADALHLFGVLRHQQGRHEEAADLVGR 72 +E + AF +++G+ +DA ++A+ + D+ G R G+++ A Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 95 Query: 73 AVGLRPNDAALQLNLGNALKALGRLDDAIERFRNALTLAPAFP 115 + + + L G L +A A L Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKT 138 Score = 50.3 bits (120), Expect = 2e-09 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 10/149 (6%) Query: 100 AIERF-RNALTLAPAFPLAH------YNLGNAYAAQERHDDAVDAFKRALALTPGDASIH 152 A+E F + T+A ++ Y+L +++DA F+ L D+ Sbjct: 14 AMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFF 73 Query: 153 NNLGNALNALGRHDDALEAFRRALELRPGHAGAHNNLGMALAALGDTDAAIAHFRAA--- 209 LG A+G++D A+ ++ + + L G+ A + A Sbjct: 74 LGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Query: 210 IAAEPHFVAAHFNLGNALDAIGQHAQAQH 238 IA + F + + L+AI + +H Sbjct: 134 IADKTEFKELSTRVSSMLEAIKLKKEMEH 162 Score = 47.2 bits (112), Expect = 3e-08 Identities = 19/106 (17%), Positives = 39/106 (36%) Query: 39 VLAANPADADALHLFGVLRHQQGRHEEAADLVGRAVGLRPNDAALQLNLGNALKALGRLD 98 + + + L+ ++Q G++E+A + L D+ L LG +A+G+ D Sbjct: 28 LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 99 DAIERFRNALTLAPAFPLAHYNLGNAYAAQERHDDAVDAFKRALAL 144 AI + + P ++ + +A A L Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 42.2 bits (99), Expect = 1e-06 Identities = 17/104 (16%), Positives = 33/104 (31%) Query: 75 GLRPNDAALQLNLGNALKALGRLDDAIERFRNALTLAPAFPLAHYNLGNAYAAQERHDDA 134 + + +L G+ +DA + F+ L LG A ++D A Sbjct: 30 EISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 89 Query: 135 VDAFKRALALTPGDASIHNNLGNALNALGRHDDALEAFRRALEL 178 + ++ + + + L G +A A EL Sbjct: 90 IHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133 Score = 40.7 bits (95), Expect = 4e-06 Identities = 12/61 (19%), Positives = 22/61 (36%) Query: 188 NLGMALAALGDTDAAIAHFRAAIAAEPHFVAAHFNLGNALDAIGQHAQAQHAFEAALALQ 247 +L G + A F+A + + LG A+GQ+ A H++ + Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 248 P 248 Sbjct: 101 I 101 Score = 39.5 bits (92), Expect = 1e-05 Identities = 19/81 (23%), Positives = 34/81 (41%) Query: 254 LFGLANTLAARGRHRDALPHYERAVGLDPSFVLAWLNLGTAHHALGAHEMALRAFDQALR 313 L+ LA G++ DA ++ LD +L LG A+G +++A+ ++ Sbjct: 39 LYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAI 98 Query: 314 LDPSLTLAQMHRAVTLLTLRD 334 +D H A LL + Sbjct: 99 MDIKEPRFPFHAAECLLQKGE 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 7e-04 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 27/196 (13%) Query: 254 VVLAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSAIDALVVTVCVGLSNLVWLPLSGALS 313 V L +G+ ++ V ++ + H + A L P+ GALS Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHS-NDVTAHYGILLA-----LYALMQFACAPVLGALS 67 Query: 314 DRIGRRPVLIAFTALTILTAYPAMQWLVGSPSFLRLLGVELWLSFLYGSYNGAMVVALTE 373 DR GRRPVL+ A + ++ + FL +L + ++ + G+ + + Sbjct: 68 DRFGRRPVLLVSLAGAAVDYA-----IMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 374 VMPADVRT-------AGFSLAYSLATTIGGFTPAISTLLIHETGNKAAPGLWLGLAAICG 426 + D R A F +GG S AP Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP---------HAPFFAAAALNGLN 173 Query: 427 LIATLVLYRSPEARNQ 442 + L + Sbjct: 174 FLTGCFLLPESHKGER 189 Score = 31.3 bits (71), Expect = 0.007 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 21/168 (12%) Query: 55 AIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLALMALG 114 + + S + A + L+++ LM+ A VLGA D GRR L+++LA A+ Sbjct: 30 GLLRDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 115 TLTVATIPGYTTIGVLAPILVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYTSWQS 174 +AT P + VL +GR++ G + G Y+++I + + + S Sbjct: 87 YAIMATAP---FLWVL-----YIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMS 137 Query: 175 GSQQVAVVFAAFVGVLLNRALPVEQMTSWGWRIPFLIGCLIVPFLFLI 222 +V +G L+ P PF + FL Sbjct: 138 ACFGFGMVAGPVLGGLMGGFSP---------HAPFFAAAALNGLNFLT 176
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 126 bits (319), Expect = 1e-35 Identities = 89/386 (23%), Positives = 143/386 (37%), Gaps = 62/386 (16%) Query: 1 MKKTLIVAALSGVFATAAHAQSSVTLYGLIDAGITYTNNQGGHSAWS-----QSTGSVNG 55 MKK+LI L+ + A + VTLYG I AG+ + + + A + + G Sbjct: 1 MKKSLIALTLAALPVAAM---ADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 56 SRWGLRGAEDLGGGLKAIFVLENGFGINNGTLKQNGREFGRQAFVGLSHEQYGALTLGRQ 115 S+ G +G EDLG GLKAI+ +E I + RQ+F+GL +G L +GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLK-GGFGKLRVGRL 112 Query: 116 YDSVVDYLG--PLSLTGTQFGGTQFAHPFDNDNLNNSFRINNAVKYTSVNWAGLKFGALY 173 + D P G + A P + S V+Y S +AGL Y Sbjct: 113 NSVLKDTGDINPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQY 163 Query: 174 GFSNNNQFANNRAYSAGVSYSYAGFNIGAGYLQLNNNFGPTVSNASGAVALDNTFVGKRQ 233 ++N N+ +Y AG +Y GF + G ++ ++ Sbjct: 164 ALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQV------------QENVNIEKY 211 Query: 234 RVFGGGLNYTFGPATAGFVFTQSRVNRATAIGAGASGVSSGIALDGTFMRFNNYEVNARY 293 ++ Y A + + A + S S RF N Sbjct: 212 QIHRLVSGYD---NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFG----NVTP 264 Query: 294 AITPAWTVAGSYTYTAGFIENHHPGWNQFNLQTAYALSKRTDMYLQGVYQKVNNDGTGLG 353 ++ A GS+ T N++ ++Q + Y SKRT + + + +G G Sbjct: 265 RVSYAHGFKGSFDAT-----NYNNDYDQVVVGAEYDFSKRTSALVSAGWLQ---EGKGES 316 Query: 354 AYINGIGGMSSTEKQIAVTAGLRHRF 379 ++ A GLRH+F Sbjct: 317 KFV-----------STAGGVGLRHKF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 158 bits (400), Expect = 9e-48 Identities = 84/349 (24%), Positives = 144/349 (41%), Gaps = 46/349 (13%) Query: 6 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAI--ARIEKITGKTPAFHETDV 63 LVTG AG+IG H + LL G+ VV DNL + ++ AR+E + FH+ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRI 123 +D + +F + AV S+ P Y +NL L++L R ++ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 124 VFSSSATVYGVPERSPIDE----TFPLSATNPYGQTKLMAEQILRDVEAADPSWRVAT-- 177 +++SS++VYG+ + P P+S Y TK E + + + Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELM---AHTYSHLYGLPATG 175 Query: 178 LRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 237 LR+F G P G P ++ + A+ + + + V+ G RD+ Sbjct: 176 LRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFT 218 Query: 238 HVVDLARGHIAALDALERRDASLTV---------------NLGTGRGYSVLEVVRAFEKA 282 ++ D+A I D + D TV N+G +++ ++A E A Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 283 SGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 331 G ++ +PGDV E A+ A E IG+ E ++ + W Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.1 bits (177), Expect = 8e-16 Identities = 53/301 (17%), Positives = 108/301 (35%), Gaps = 50/301 (16%) Query: 288 VMVTGAGGSIGSELCRQILKFQPAQLIAFD-LSEYAMYRLTEELRERFPDLPVVPIIGDA 346 +VTGA G IG + +++L+ Q++ D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 347 KDSLLLDQVMSRYAPHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRH 406 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 407 FVLIST---------------DKAVNPTNVMGASKRLAE-MACQALQQTSARTQFETV-- 448 + S+ D +P ++ A+K+ E MA S Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY----SHLYGLPATGL 176 Query: 449 RFGNVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQA------ 498 RF V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 499 ------------SSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIEFSGLRPG 546 ++ ++ + PV+++D + L G + + L+PG Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPG 293 Query: 547 E 547 + Sbjct: 294 D 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 105 bits (264), Expect = 2e-28 Identities = 67/344 (19%), Positives = 130/344 (37%), Gaps = 42/344 (12%) Query: 3 RVIVTGANGFVGRALCRALLAAGHEVTGL-------------VRRRGVCAEGVSEWVHEA 49 + +VTGA GF+G + + LL AGH+V G+ R + G H+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ--FHKI 59 Query: 50 D--DFDGVADRWPTGLQVDAVVHLAARVHMMRDRSPDPDAAFRASNVAATMRVARAAQQQ 107 D D +G+ D + +G + V R+ + S + A+ SN+ + + + Sbjct: 60 DLADREGMTDLFASG-HFERVFISPHRLAV--RYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 108 GARRFVFLS--SVKAIAESDGGTPLCE-NSTPAPQDAYGRSKLEAERALEQLRDELSFDT 164 + ++ S SV + P +S P Y +K E Sbjct: 117 KIQHLLYASSSSVYGLNRKM---PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 165 VIVRPPLVYGPGVRAN--FLSLMRAVSRGVPLPL-GAVRARRSMVYVDNLADAVMRCVTE 221 +R VYGP R + +A+ G + + + +R Y+D++A+A++R Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 222 PAATNGCFHVADSDMPPTIAEL-LDDIGHHLGRPARLLPVPERLLRVAGALTGRAAQ--- 277 + + V +IA + +IG+ P L+ ++ G A+ Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGN--SSPVELM----DYIQALEDALGIEAKKNM 287 Query: 278 IDRLTSDLR---LDTTHIRTVLDWRPPRSSEEGLAETACWFKSL 318 + D+ DT + V+ + P + ++G+ W++ Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (425), Expect = 3e-51 Identities = 83/363 (22%), Positives = 136/363 (37%), Gaps = 58/363 (15%) Query: 13 KILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAE----LVVAD 68 K LVTG AGFIG +S+RL + V +DNL+ + +++ L A+ D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY-YDVSLKQARLELLAQPGFQFHKID 60 Query: 69 VTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVV 128 + D L + E + SL +A N+ G + + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--I 118 Query: 129 EHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRPT 188 +H+L SS +VYG +P D + P Sbjct: 119 QHLLYASSSSVYGLN------------------------------RKMPFSTDDSVDHPV 148 Query: 189 SVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKKV 248 S+Y ATK A E + +S P + LR VYGP + F++ E K Sbjct: 149 SLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF----KFTKAMLEGKS 204 Query: 249 IPLYEDGNVTRDFVSIDDVADAIVATLVRTPEA-----------------LSLFDIGSGQ 291 I +Y G + RDF IDD+A+AI+ P A +++IG+ Sbjct: 205 IDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSS 264 Query: 292 ATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGEL 351 ++D + + G + + GDV + D +G+ P+ ++K G+ Sbjct: 265 PVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNF 324 Query: 352 QTW 354 W Sbjct: 325 VNW 327
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.3 bits (68), Expect = 0.007 Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 195 LFTMVLMFLSPVFYPASALPEKYRFWLELNPLTLFIEQSRGILLEGRVPDFHPLGLAFL 253 L ++FLS +P LP ++ PL+ I+ R I+L V D A Sbjct: 184 LVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALC 242
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 58.3 bits (141), Expect = 7e-12 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 27/160 (16%) Query: 1 MKILVTGANGQVGWELARSLAVLGQVV-----------PLTRE--------------QAD 35 MK LVTGA G +G+ +++ L G V ++ + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 36 LGRPETLARIVEDAKPDVVVNAAAYTAVDAAETDGAAANVINGEA-VGVLAAATKRVGGL 94 L E + + + V + AV + + A N + +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 95 FVHYSTDYVFDGTKPSPYIETDPT-CPVNAYGASKLLGEL 133 ++ S+ V+ + P+ D PV+ Y A+K EL Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 176 bits (447), Expect = 5e-54 Identities = 90/350 (25%), Positives = 136/350 (38%), Gaps = 45/350 (12%) Query: 49 ILVTGGAGFIGANFVLDWLAQSDEAVLNVDKLT--YAGNLGTLK-SLQGNPKHVFARVDI 105 LVTG AGFIG + L + V+ +D L Y +L + L P F ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 106 CDRAAIDALLAQHKPRAIVHFAAESHVDRSIHGPADFVQTNVVGTFTLLEAARQYWSALG 165 DR + L A + V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN----- 116 Query: 166 TDAKAAFRFLHVSTDEVFGSLSPADPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 224 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 117 ----KIQHLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 225 LPVLTTNCSNNYGPYQFPEKLIPLMIANALGGKPLPVYGDGQNVRDWLYVGDHCSAIREV 284 LP YGP+ P+ + L GK + VY G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 285 L------------------ARGVPGETYNVGGWNEKKNLDVVHTLCDLLD-EARPKAGGS 325 A P YN+G + + +D + L D L EA+ Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN---- 286 Query: 326 YRDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVRWYLD 375 + +PG + D + L +G+ P T + G+ V WY D Sbjct: 287 ------MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.004 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 194 PTDEPSELTTELAAAAPVVSSEPADAAALPNAALPDVKTLPAEAAPEPISAEPTLPSCEA 253 +E ++L A+ + ++P + A P T P + + LPS Sbjct: 451 QAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGE 510 Query: 254 VATPVPAAPVNAPATPPIAAAGLV 277 A P A A +A AG+ Sbjct: 511 TANPF----FTAAALTVMATAGVA 530
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.034 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 437 ANALSVANPAALTAAANTVAGTLARAANGTPVAGAIGGLVAALPVANPAGALTSAANNAA 496 A A A A AA A T A ANG+ VA A G + VA A +L A ++A Sbjct: 228 AEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGR--GLIQVAQGAASLAQAISDAI 285 Query: 497 STIATVAGTNPAAAIGGVA 515 + + V + P+ G A Sbjct: 286 AVLGRVLASAPSVMAVGFA 304
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 2e-04 Identities = 45/349 (12%), Positives = 92/349 (26%), Gaps = 41/349 (11%) Query: 90 APDGRPTNALR---PARRAHRAHRARPARRPARKPPPAGRVRQMNANARQRP-----AQC 141 + N ++ P+ ++ AR P P PA A + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 142 NPQCACAPS--SRAAARRCRSGAELGYHRREQIARLQPDEARTHPPPPAAPHRRPLRRGV 199 N Q A + +R A+ +S + E +A+ + T Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNE-VAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 200 VARSRDVDRADRRAVD------RRGLARDRADPARAADVAHDLRRPARQHELALGAALQA 253 + + + + +A+PAR D +++ P Q A Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN---TTADTE 1169 Query: 254 DPGEKRRDAARTRI---RGLGRKSRTAVGPRAEGRCRLRAKRHRAEGKARGSRVARQRRL 310 P ++ + + + P + + +R R R Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Query: 311 RAA--RDPVSRARDRAAVAVQGQAARARRRGRGRARARPR--------AAEDERHRAGRP 360 + + DR+ VA+ + ARA+ + A + Sbjct: 1230 VPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMN 1289 Query: 361 DPAAAAV-----RRGRRARADGRPHRRRVPVRRFDADSGDGQAVSHARR 404 + V + + RR + G Q +S+ + Sbjct: 1290 NEGQYNVWVSNTSMNKNYSSS---QYRRFSSKSTQTQLGWDQTISNNVQ 1335
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 29.6 bits (66), Expect = 0.041 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Query: 336 AAAAMAAAAIVATVATAAEANAYPVTVRSCGRDVTFERAPARAVSNDVNLTEMMIALGLQ 395 AAAA+ A A +A ATA NA + A A DV++T + A+ Sbjct: 11 AAAALLAVAPIA--ATAMPVNAATTINADSAIN-----ANTNA-KYDVDVTPSISAIAAV 62 Query: 396 TRMAGYTGIAGWKTGNA 412 + I G TG+ Sbjct: 63 AKSDTMPAIPGSLTGSI 79
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 66/249 (26%), Positives = 101/249 (40%), Gaps = 26/249 (10%) Query: 12 ITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFVASIDVRDADAM 71 ITGA+ G+G A+AR A G ++ + +LE+ + +A DVRD+ A+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 72 R----RWLEQFDDAHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGAMNAVLPV 127 R + PI +L+ AGV + E A N G NA V Sbjct: 73 DEITARIEREMG---PIDILVNVAGVLRPGLI--HSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 128 IDRMRARGSGQVALISSLAALRGMAISPAYCASKAALKAWGDSVRPVLKRDGIRLSVVLP 187 M R SG + + S A AY +SKAA + + L IR ++V P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 188 GFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLPLL-PAVM 246 G +T M + LW+ + A+ + +G G+ L L P+ + Sbjct: 188 GSTETDM-------QWSLWADENGAEQVIKGSLET---------FKTGIPLKKLAKPSDI 231 Query: 247 ADAILGRLS 255 ADA+L +S Sbjct: 232 ADAVLFLVS 240
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 129 bits (326), Expect = 4e-37 Identities = 80/352 (22%), Positives = 136/352 (38%), Gaps = 52/352 (14%) Query: 4 RVLITGITGMVGSHLADFLLENTDWEIYGLCRWRSPLDNV-SHLLPRINEKNRIRL---- 58 + L+TG G +G H++ LLE ++ G+ DN+ + + + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGI-------DNLNDYYDVSLKQARLELLAQPG 53 Query: 59 ---VYGDLRDYLSIHEAVKQSTPDFVFHLAAQSYPKTSFDSPLDTLETNVQGTANVLEAL 115 DL D + + + VF + + S ++P ++N+ G N+LE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 116 RKNNIDAVTHVCASSEVFGRVPREKLPIDEE-CTFHPASPYAISKVGTDLIGRYYAEAYN 174 R N I + +SS V+G K+P + HP S YA +K +L+ Y+ Y Sbjct: 114 RHNKIQHLL-YASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 175 MTVMTTRMFTHTGPR-RGDVFAESTFAKQIAMIERGLIPPVVKTGNLDSLRTFADVRDAV 233 + R FT GP R D+ A F K + G V G + R F + D Sbjct: 171 LPATGLRFFTVYGPWGRPDM-ALFKFTKAML---EGKSIDVYNYGKM--KRDFTYIDDIA 224 Query: 234 RAYYMLVTINPI-----------------PGAYYNIGGTYSCTVGQMLDTLISMSTSKDV 276 A L + P P YNIG + + + L +D Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL------EDA 278 Query: 277 IRVETDPE--RLRPIDADLQVPNTRKFEAVTGWKPEISFEKTMEDLLNYWRA 326 + +E L+P D +T+ V G+ PE + + +++ +N++R Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 1e-07 Identities = 59/332 (17%), Positives = 105/332 (31%), Gaps = 82/332 (24%) Query: 1 MKVFLVGSTGYIGKTLFDA-CSRRWRTLGT-STRDGADIVFSLARAEAFPYEQVSA--GD 56 MK + G+ G+IG + + +G + D D+ AR E D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 ------------------VVAVAA------AISSPDACAKDYETAFQVNVTGTLTLIRGV 92 V ++ +P A Y N+TG L ++ G Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA----Y---ADSNLTGFLNILEG- 112 Query: 93 VARGA---RVIFFSSDTVYGASEQLLSEEAELT--PAGAYGAMKRRVEA---ELGENAAV 144 R +++ SS +VYG + ++ + P Y A K+ E + Sbjct: 113 -CRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 145 KVIRLSY--VFSLRDR-------FTQYLLGCAKEGKRADIFK--PFSRCVVYLSDVVEGV 193 L + V+ R FT+ +L EGK D++ R Y+ D+ E + Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 194 VSLIE-------RWD---------AIDERVINFVGPELVAREDFVEKIRNLAAPELDYGF 237 + L + +W RV N V D+++ + + E Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 238 SEP-EGDFFVNRPRIINVSSARFEKLLGRRPR 268 GD + + +++G P Sbjct: 288 LPLQPGDVLETSA---DTKALY--EVIGFTPE 314
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 38.0 bits (88), Expect = 2e-05 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 88 MAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMF 147 M M + +++ DI + + + + + ALG + +++ Sbjct: 94 MEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS----LLY 149 Query: 148 AWVMIIWFG---ASLGFIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKI 204 A +I G ASLG ++ AL+ + V + LSGA+F VD L FQ Sbjct: 150 ALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTA 209 Query: 205 VLWLPMVHGVEMLREGYFG 223 +LP+ H ++++R G Sbjct: 210 ARFLPLSHSIDLIRPIMLG 228
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 135 bits (342), Expect = 3e-37 Identities = 81/382 (21%), Positives = 138/382 (36%), Gaps = 71/382 (18%) Query: 5 IGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVL-VGAPAKRQSVTNPK 63 + IDLGT N+ + + V + R V VG AK+ P Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD----RAGSPKSVAAVGHDAKQMLGRTPG 68 Query: 64 NTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIKADNGDAWVEAHGEKLAPPQVSAEVLRK- 122 N + A++ + + V D V+ ++L+ Sbjct: 69 N-IAAIRPM------KDGVIADF---------------------------FVTEKMLQHF 94 Query: 123 MKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 182 +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 183 KAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYII 242 +E V D+GGGT +V++I + V + +GG+ FD+ II+Y+ Sbjct: 155 VSE--ATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYVR 203 Query: 243 GEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSS----QQTEINLPYITADASGPKHLN 298 + G + AE+ K E+ S+ + EI + P+ Sbjct: 204 RNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFT 250 Query: 299 LKVTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDD--VILVGGQTRMPKVQEKVKE 356 L + LEAL E L + SDI + ++L GG + + + E Sbjct: 251 LN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLME 309 Query: 357 FFGKEPRRDVNPDEAVAVGAAI 378 G +P VA G Sbjct: 310 ETGIPVVVAEDPLTCVARGGGK 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.002 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%) Query: 2 ENTQENPTDQTTEETGREAQAAEPAAQAAENAAPAAEAA--------LAEAQAKIAELQE 53 T E TE T + + A+ A + E A + K E Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 54 SFLRAKAETENVRRRAQ 70 +AK ETE + + Sbjct: 1108 KEEKAKVETEKTQEVPK 1124
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.041 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 70 LASLAACIAKRGFEVVFEADTAQAIGSAGYPALTP---AEIGARADVAVVLGGDGTMLGM 126 S+ + F ++ A Q G+A +PAL A + + G G+++ M Sbjct: 91 FGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAM 150 Query: 127 GRQLAPYKTPLIG---INHGRLGFITDIP 152 G + P IG ++ ++ IP Sbjct: 151 GEGVG----PAIGGMIAHYIHWSYLLLIP 175
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 8/249 (3%) Query: 26 GRAVLITGGATGIGASFVEHFARQGARVAFVDLDEKAGRALVARLADAAHEPVFVVCDLT 85 G+ ITG A GIG + A QGA +A VD + + +V+ L A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 86 DIGALRGAIDAIRVRIGPIAVLVNNAANDVRHAVADVTPESFDASIAVNLRHQFFAAQAV 145 D A+ I +GPI +LVN A + ++ E ++A+ +VN F A+++V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 146 IDDMKRLGGGAIVNLGSIGWMLKNAGYPVYATAKAAVQGLTRALARELGPFGIRVNTLVP 205 M G+IV +GS + YA++KAA T+ L EL + IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 206 GWVMTDKQRRLWLDDAGRAAIKAGQCIDAEL--------LPGDLARMALFLAADDSRLIT 257 G TD Q LW D+ G + G + P D+A LFL + + IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 258 AQDVVVDGG 266 ++ VDGG Sbjct: 248 MHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.011 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 10/204 (4%) Query: 7 AKLSGVVLACGIIAGCASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPT 66 K + V I Q P+ + N+ +A D A ++ + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP-PPAPATPSETTETVAENS 1044 Query: 67 REEPWSRIAQIQFQQGHYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQD 126 ++E + Q Q A+EA K + Q VA T+ Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT---NEVAQSGSETKETQTTETK 1101 Query: 127 SSLAGDAKSDAQALAKQLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAES 186 + + + A+ ++ ++ + P+Q+ + + +A+P E Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE------QSETVQPQAEPARENDPTVNI 1155 Query: 187 ETAAAPATPPAAPAQPAATPAPAP 210 + + A QPA + Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNV 1179 Score = 28.5 bits (63), Expect = 0.029 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 32/191 (16%) Query: 23 ASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPTREEPWSRIAQIQFQQG 82 + T P N AD +V ++ I + P P + Sbjct: 994 TTNITTP-----NNIQADVPSVPSNNEE---IARVDEAPVPPPAPATPSETTETV----- 1040 Query: 83 HYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAK 142 A + QE+ +K ++ A A +A E+ ++ ++ A+S ++ Sbjct: 1041 ----AENSKQESKTVEKNEQDATETTAQNR-EVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 143 QLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAESETAAAPATPPAAPAQP 202 Q +T ++ AT +K ++ E P+ + +P + QP Sbjct: 1096 QTTET---------KETATVEKEEKAKVETEKT--QEVPKVT---SQVSPKQEQSETVQP 1141 Query: 203 AATPAPAPAKA 213 A PA Sbjct: 1142 QAEPARENDPT 1152 Score = 28.1 bits (62), Expect = 0.038 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%) Query: 87 AIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAKQLRD 146 I A ++ + + V AT S ++A ++K +++ + K Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPS----ETTETVAENSKQESKTVEKN--- 1054 Query: 147 TLGEAALFPPEQQATKPVVKKRRIVRRAKP-VHEAPRAAESETAAAPATPPAAPAQPAAT 205 EQ AT+ + R + + AK V + E A + Q T Sbjct: 1055 ----------EQDATETTAQNREVAKEAKSNVKANTQTNE----VAQSGSETKETQTTET 1100 Query: 206 PAPAPAKAAG 215 A + Sbjct: 1101 KETATVEKEE 1110
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 66.6 bits (162), Expect = 3e-14 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 38/183 (20%) Query: 102 NLGSGVIVSSEGYILTNQHVVDGADQIEVALA------------DGRTATAKVIGSDPET 149 + SGV+V +LTN+HVVD AL +G ++ E Sbjct: 102 FIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 150 DLAVLKIN--------MTNLPTITLGRSDQSRVGDVVLAIGNPFGVGQTVTMGIISALGR 201 DLA++K + + T+ + +++V + G P ++ + Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-------KPVATMWE 213 Query: 202 NHLGINTFEN-FIQTDAPINPGNSGGALVDVNGNLLGINTAIYSRSGGSLGIGFAIPVST 260 + I + +Q D GNSG + + ++GI+ G+ + Sbjct: 214 SKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAV 264 Query: 261 ARN 263 N Sbjct: 265 FIN 267
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 403 bits (1037), Expect = e-133 Identities = 215/691 (31%), Positives = 324/691 (46%), Gaps = 88/691 (12%) Query: 6 TALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPV 65 T L+ A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 66 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQV 124 E+Q + S L + GFA++ ++GVLKVV DAK VP AP GD+VVT+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGI-GDEVVTRV 131 Query: 125 FELRNESANNLLPVLRPLI--SPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 182 L N +A +L P+LR L + ++ Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 183 SQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLA 242 V VPL A+A D+ +T+L + ++ V AD RTNA+L+ R Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 243 AAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFN 302 + +QLD GN V+ L+ A+A L + L G+ Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGIS-------------------- 290 Query: 303 QGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPG 362 S + S + Sbjct: 291 ---------------------STMQSEKQAAKPVAALDKNI------------------- 310 Query: 363 GMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATTSANLGIQWQ 422 +I+A +N+LI+TA+ V +L VI QLD RR QV +EA++ E+Q NLGIQW Sbjct: 311 -IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA 369 Query: 423 VANNALYAGTNLVTGQTGLGNSIVNLTAGAVT--NPGGTLGSLG---SITNGLNIGWLHN 477 N +T T G I AGA G SL S NG+ G Sbjct: 370 NKNAG-------MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG---- 418 Query: 478 MFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTA 537 F LL + S+ ++L+TP++VTLDN EA VGQ VP+ TGS + + Sbjct: 419 -FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTSGD 473 Query: 538 NAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQ 597 N FNT +R+ VG+ L VKPQI EG + L++ E S+V +++++ G TF R++ Sbjct: 474 NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV-ADAASSTSSDLGATFNTRTVN 532 Query: 598 STVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPV 657 + VL +GE +V+GGL+ + + KVPLLGDIP IG LFRS K K NLM+F+RP Sbjct: 533 NAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPT 592 Query: 658 IINDRETAQAVTSNRYDYIQGVTGAYKSDNN 688 +I DR+ + +S +Y + N Sbjct: 593 VIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 276 bits (706), Expect = 2e-93 Identities = 82/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGVTGEDDSADEPAEASG---IRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL ++ D S ++ S I Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLD---ITDSITAKVD 296 +++ VL ++ + ++++VA++ + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQRMI 320 C G+ + A ++ I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 134 bits (339), Expect = 1e-43 Identities = 78/126 (61%), Positives = 97/126 (76%), Gaps = 3/126 (2%) Query: 19 AMDD-WAAALAEQNQQPIETGATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRT 77 A+DD WA AL EQ ++ A VF+ L S DIDLI+DIPVK+TVELGRT Sbjct: 14 ALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRT 71 Query: 78 KIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSER 137 ++ I+ LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+G+R+TDIITPSER Sbjct: 72 RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131 Query: 138 IRKLNR 143 +R+L+R Sbjct: 132 MRRLSR 137
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 289 bits (741), Expect = e-101 Identities = 153/242 (63%), Positives = 191/242 (78%), Gaps = 1/242 (0%) Query: 11 RWLPAILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 R L + L + A LP S P GG ++SL VQT++ +T L+F+PA+LLMM Sbjct: 3 RLLSVAPVLLW-LITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 71 TSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTL 130 TSFTRIIIV LLR A+GT S PPNQVL+GLALFLT F+MSPV+D+ Y DAY+PFSE + Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 131 QMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVTSELKT 190 M +A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 191 GFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQ 250 FQIGFTIFIPFLIID+V+ASVLM++GMMMV PAT++LPFKLMLFVLVDGWQLL+GSLAQ Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 251 SF 252 SF Sbjct: 242 SF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 68.6 bits (168), Expect = 4e-19 Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 4 ENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATMV 63 ++++ ++A+Y+ L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLSTMIDYLRETLLRVATLG 88 + W ++ Y R+ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 162 bits (411), Expect = 3e-51 Identities = 117/250 (46%), Positives = 158/250 (63%), Gaps = 1/250 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP 60 M VT Q WL + WP +R+LAL++ AP+ RS P RVK+GLA + +AP+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 IPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSS 120 V VFS +W+ V Q LIG ALGFTMQ FAA+ AG+IIGL MGL FATF DP S Sbjct: 61 NDVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAI 180 PV+ R ++ +A+L FL F+GHL + + LVD+F +P+ L + + L G+ I Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF 240 F GL+LALP++ LL NLALG+LNR APQ+ IF +GFP+T+ VG+ L+ + P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VGRLFDTGVD 250 LF + Sbjct: 240 CEHLFSEIFN 249
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 44.0 bits (104), Expect = 3e-07 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 34/178 (19%) Query: 87 RALDAGARTLMFPGVETADEAAHAVRLTRFQAPDAPDGLRGVAGIVRAAAYGMRRDYVQT 146 RA G +MFP + T +E LR I++ + + V Sbjct: 380 RASTYGNLKVMFPMIATLEE------------------LRQAKAIMQEEKDKLLSEGVDV 421 Query: 147 ANAQIATIVQIESARGVDEAERIAATPGVDCVFVGPADL----------SASLGHLGDTK 196 ++ I + +E A A VD +G DL + + +L Sbjct: 422 SD-SIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPY 478 Query: 197 HPDVAAALEHVLAAGRRAGVPVGI---FAADTAGARQSLEAGFRVVALSADVVWLLRA 251 HP + ++ V+ A G VG+ A D L G ++SA + R+ Sbjct: 479 HPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARS 536
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.018 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 19/84 (22%) Query: 677 PASASGADGASGASGAGGE-----------PTEHANAGGNPAG-GGIAGGAAGTANNGSG 724 P GAS SG E +G G G +GG +GT N S Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 725 AAAPGGM-------PGANGAAMGV 741 AAP PGA G A+ + Sbjct: 84 VAAPVAFGFPALSTPGAGGLAVSI 107 Score = 29.7 bits (66), Expect = 0.050 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 681 SGADGASGASGAGGEPTEHANAGGNPAGGGIAGGAAGTANNGSGAAAPGGM-PGANGAAM 739 +G GAS G +E+ GG G GG +G N G + GG G N +A+ Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Query: 740 GVPPA 744 P A Sbjct: 85 AAPVA 89
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.046 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 293 KAAKGKKATKGADKSAKAADKGADKDKGAKPAAAPPVPARSRPAGPAQPAAPLKPATAPS 352 K + +KA A A+A A K+K AK A + + P A P Sbjct: 424 KLTEKEKAELQAKLEAEAK---ALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPG 480 Query: 353 PGAP 356 G Sbjct: 481 KGQA 484
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 504 bits (1300), Expect = 0.0 Identities = 247/348 (70%), Positives = 294/348 (84%), Gaps = 2/348 (0%) Query: 1 MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQEGGPNGKKTIQAVGKEA 60 M R FSNDL+IDLGTANTLIY++G+GIVL+EPSVV+IRQ+ K++ AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA-GSPKSVAAVGHDA 59 Query: 61 KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHESRMFSPSPRIIICVPCGST 120 KQMLG+ PGNI AIRPMKDGVIADF VTE+M++ FIK H + PSPR+++CVP G+T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIKEAAHGAGASQVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVGVISLG 180 QVERRAI+E+A GAGA +V+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GIVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240 G+VY SVR+GGD+FDEAI+NY+RRNYG LIGE TAE IK EIGSA+PG EV+E+EV+GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLSEGIPRSFTISSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL 300 NL+EG+PR FT++SNEILEAL +PL IVS+V +ALEQ PPEL +DI+ERGM+LTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKL-GSIFSYE 347 LR+LDRLL EETG+PV+VAEDPLTCV RG G ALE +D G +FS E Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.013 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 395 SNKIAKEIFVTIWDEKAADEGAADRIIEAKGLK-QISDTGALEAIIDEVLAANAKSVEEF 453 +N EIF I E D A KG+K ++SD LE + ++ L KS +EF Sbjct: 648 ANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK--LENV-NKNLKDFDKSFDEF 704 Query: 454 RAGKDKAFNALVGQAMKATKGKANPQQVN 482 + GK+K F+ + +KA KG +N Sbjct: 705 KNGKNKDFSK-AEETLKALKGSVKDLGIN 732
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 5e-12 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 24 ASRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQMFEG 83 A +T+ + E R HIL + + +A V+ A+Y HF K+ +F Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 84 LIEFIEETFFGLVNQIAANEPNGVLQA-RSIALMLLNFSAKNPGMTRVLTGEALVGEHER 142 + E E L + A P L R I + +L + ++ + H+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME----IIFHKC 117 Query: 143 LAERVNQMLERVEASIKQCLR---VALLEAQAHAAGGGAPPPVPLPDDYDPALRASLVIS 199 ++++ + ++ L+ A LP D A ++ Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKH-CIEAKM-------LPADLMTRRAAIIMRG 169 Query: 200 YVLG 203 Y+ G Sbjct: 170 YISG 173
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 31.7 bits (72), Expect = 0.004 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 261 LFAASSADEIFGSMPPEIVPSSKSASISRADRSVSRLPSLSITPGMLVIITSFSAFSTVA 320 A + + +P S S +++ + SL+ P +L+++TSF+ V Sbjct: 13 WLITPLAFAQLPGITSQPLPGG-GQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVF 71 Query: 321 SLPATRSALMLYDRPSSPKPIG 342 L R+AL P + +G Sbjct: 72 GL--LRNALGTPSAPPNQVLLG 91
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 5e-07 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 232 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLVMMTNIPGVMDKEG----NLLTDL 287 +PVI G G+ I+ DL KLA +NA+ +++T++ G G L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 288 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 325 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.7 bits (85), Expect = 9e-05 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 83 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQIDQAL 132 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 9e-23 Identities = 30/127 (23%), Positives = 60/127 (47%) Query: 1 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND 60 M+ LV DD+ L + L R GY VR N + A + + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 120 + L+ + +PD +LV++ + TA++A + GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQAEEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 45.2 bits (107), Expect = 4e-08 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVL 134 I+ + I + L+ VE + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.014 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 17 IIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGKTEIAR---RLAKL 73 ++G++ A + + ++ + T +++ G +G GK +AR K Sbjct: 139 LVGRSAAMQEI------YRVLARLMQ------TDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 ADAPFIKI 81 + PF+ I Sbjct: 187 RNGPFVAI 194
>FLAGELLIN#Flagellin signature. Length = 507 Score = 41.2 bits (96), Expect = 6e-06 Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 10/369 (2%) Query: 16 MNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQYTQNQTIVQTALQT 75 +N Q+ ++ +++SSG+ + + D+ A A + ++ L Q ++N + QT Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 76 EDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLLTLANTADGAGNYL 135 + L +N+ L + + A +G SDSD ++ +IQ + + ++N G + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136 Query: 136 FAGFQPTTQPFSNKPGGGVTY------AGDYGARAVQIADTRTVSQGDNGANVFMSVPFL 189 + G +T G + + + GD ++ + Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 190 GSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDNSVTPPTT 249 + +G + + T A T D T +T Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 250 TAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLD----TVIAALKS 305 + G GG+ V T V T++ T+ A + Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 306 PVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQTTN 365 + A+T ++ S + T S E + T+ Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 366 SLSNLTDTN 374 +N Sbjct: 377 YTANAAGDK 385
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.1 bits (68), Expect = 0.031 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 477 IAALTERMGKITNQLKLFVGRAKPRNERAHVARALRNVLALLKERMKDVELVITLRDETR 536 I LT + K +L+ + + + A A L +L + + + +E Sbjct: 41 IEKLTAALEKSKEELRAIKDQTE-ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQM 99 Query: 537 DAAVA---------ARFDPSRDEPALIARCEDLR--LEQVLINLLGNALDAVAAVDAPRI 585 +A A + F+ + + R D+R ++VL +L+G ++A + + Sbjct: 100 NAEYALKEVSDMFVSMFESMDN-EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETV 158 Query: 586 DVAIDATAATLA 597 +A D T + A Sbjct: 159 IIAEDLTPSDTA 170
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 445 bits (1145), Expect = e-156 Identities = 152/483 (31%), Positives = 231/483 (47%), Gaps = 47/483 (9%) Query: 4 RLQVIYIEDDELVRRASVQSLQLAGFDVVGFGSVEAAEKAIVGDATGVIVSDIRLPGASG 63 ++ +DD +R Q+L AG+DV + + I ++V+D+ +P + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LELLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLTETVRRALERR 123 +LL + ++ PD+PV++++ A++A GAYD++ KPF L + RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 ALVLENHALRRELAGQGVVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELI 183 +L ++GRS A++++ R++A + TD +++I G++G GKEL+ Sbjct: 123 K------RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARSLHELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEYASGGTLF 243 AR+LH+ RR+ PF+A+N A+P + ESE+FG+E GAFTGA R G+ E A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMSEHVAAGTFRRDL 303 LDEI MP+ Q +LLRVLQ G +G PIR + R+VAA D+ + + G FR DL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 LYRLNVVTIALPPLAERREDIVPLFEHFMLDAAVRYGRPAPLLTDRQRASLMQRDWPGNV 363 YRLNVV + LPPL +R EDI L HF + A + G + WPGNV Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHF-VQQAEKEGLDVKRFDQEALELMKAHPWPGNV 355 Query: 364 RELRNAADRFVLGVTEGIVG---------------------------------------- 383 REL N R + ++ Sbjct: 356 RELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQY 415 Query: 384 DAGPETDEHAEQSLKERVEQFERAVIAETLNRTGGAVATTADKLHVGKATLYEKMKRYGL 443 A + + E +I L T G AD L + + TL +K++ G+ Sbjct: 416 FASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475 Query: 444 SAK 446 S Sbjct: 476 SVY 478
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.8 bits (61), Expect = 0.025 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 97 EFVAVAMNYDPPMYVANYAQTRQ------LPFKVALDDGSVAK-QFGNVQLTPTTFVIGK 149 ++V A+ +P NY Q + +P ++ DDG+ F N+ L P FV+ Sbjct: 386 QYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEI-FDDGTFTYFGFKNITLQPAIFVVQP 444 Query: 150 DGKI 153 DGK+ Sbjct: 445 DGKL 448
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 7e-04 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Query: 57 GEALLVAQARDE--GIVGFVSVWEPERFVHHLYVAGTRLREGIGAALLRALPGW----PA 110 G+A + + G + S W + + VA ++G+G ALL W Sbjct: 64 GKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 111 ARYRLKCLVRNERALAFYRAHGF 133 L+ N A FY H F Sbjct: 124 CGLMLETQDINISACHFYAKHHF 146
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 28.9 bits (64), Expect = 0.025 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 8/84 (9%) Query: 158 ELYLPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADL 217 +L L +P E + GV V C H+ + P G++ P LD T Sbjct: 14 QLSLSIPDTIEPVI--GVKVG-----EFAC-HITEHPVGQILMFTLPSLDNNDEKETLLS 65 Query: 218 ADVIGQAGAKRALEVAAAGGHHML 241 ++ Q K L GGH +L Sbjct: 66 HNIFSQDILKPILSWDEVGGHPVL 89
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 78.5 bits (193), Expect = 4e-18 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%) Query: 81 QRRAAPQLPIDPDDP-----FYQFFRHFYGQIPGMGGGRQPQPDDQPSTSLGSGFIISAD 135 ++R + + +D I Q + T + SG ++ Sbjct: 62 EQREHANVILPNNDRHQITDTTNGHYAPVTYI---------QVEAPTGTFIASGVVV-GK 111 Query: 136 GYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGADKQSDVAVLKIDA-- 181 +LTN HV+D + L + A ++ + D+A++K Sbjct: 112 DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNE 171 Query: 182 ------SGLPIVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRALPDENYTPFI 235 + + + A+++V Q + G P +K + + + Sbjct: 172 QNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKITYLKGE--AM 226 Query: 236 QTDVPVNPGNSGGPLFNLNGEVIGINS 262 Q D+ GNSG P+FN EVIGI+ Sbjct: 227 QYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 126 bits (317), Expect = 2e-38 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 1/209 (0%) Query: 1 MARRTKEEALATRDRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFASKSELFD 60 MAR+TK+EA TR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMFDRVLLPIDELKAGT-GEPHADPLGRIREILIWCLLGAARDPQLRRVFSILFMKCEYV 119 +++ I EL+ + DPL +REILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 ADMGPLLQRNREGMRDALRNIEADLAQGVANGQLPADLDTWRATLMLHTLVSGFVRDMLM 179 +M + Q R ++ IE L + LPADL T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 180 LPGEIDAERHAEKLVDGCFDMLRTSPAMR 208 P D ++ A V +M P +R Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 4e-06 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 75/266 (28%) Query: 92 KIDPAPYIAQLNSAKATLAKAQANLATQNALVARYKVLVAANAVSKQQYDDAVAAQGQAA 151 +++ A+ + A + + + + + + + L+ A++K + +A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 152 ADVGAGKAAV-------------------------------------------ETAQINL 168 ++ K+ + + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 169 GYTDVVSPITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVDLTQSSLDGLKLRQDI 227 + + +P++ +V + T G V ++ TLM V + D + V + D + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVG- 383 Query: 228 QSGRIK-------TEGPGAAKVTLILEDGKPYPERGKLQFSDVTVDQTTGSVT--IRAI- 277 Q+ IK G KV I D DQ G V I +I Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNI--------------NLDAIEDQRLGLVFNVIISIE 429 Query: 278 -----FPNKQRVLLPGMFVRARIEEG 298 NK L GM V A I+ G Sbjct: 430 ENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 31.7 bits (72), Expect = 0.006 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 20/122 (16%) Query: 1 MRVERVPYRLITVATAAVFLAACGKKESAPPPQTPEVGVVTVQPQSVPVVSELPGRTSAY 60 R V Y ++ A L+ G+ E G +T +S + Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATAN----GKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 LVAQVRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAQLNSAKATLAKAQANLATQN 120 +V EG V+ G L K+ A +++L +A+ Sbjct: 111 IVK----------------EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 AL 122 L Sbjct: 155 IL 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1272 bits (3293), Expect = 0.0 Identities = 674/1035 (65%), Positives = 822/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP+AQYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLATPILPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TIT+TF GT+PDIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D+++YVAS+VKD +SR+NGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATITEATLL 240 QYAMRIWLD L Y LTPVDV + + QN QIA GQLGGTPA+PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDVA++ LGGE YN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ E+ +FP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SIN L+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ LPPKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNSSRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF+ S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLAVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLTQ 600 L+IY ++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T + L ++DY L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGRMFGRYAGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R + +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 LVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP-TLRGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMAA+ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDMNIWYVRNGSGGMVPFSAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPFSAF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 M ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTEKMGP 959 V++VVPLG++G LLAATL +NDV+F VGLLTT+GLSAKNAILIVEFA++L + E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKVRAVFSG 1034 +P+FFV +R F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.021 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 8/112 (7%) Query: 359 ATERQKALDAQTAELRTKTEQALASVRQADSQLSQLEG--KLAD----AQTAQTALQQQY 412 +++ LD + AE T + + + S+L+ L A+ A + +Y Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY 261 Query: 413 QDLSRNRDAWM--IEEVGQMLSSASQQLLLTGNTQLALIALQNADARLASSQ 462 + + +E++ + SA ++ L I + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.041 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%) Query: 73 VGYFLFEVPSNVILHKVGARVWIARIMVTWGIIS---ALTMFVSTPAMFYTM--RFLLGV 127 + L + K+ ++ I R+++ II+ ++ FV + RF+ G Sbjct: 56 TAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA 115 Query: 128 AEAGFFPGVILYLTYWYPAHRRGRMTTLFMTAVALSGVVGGPISGYILKTFDGMNGWRGW 187 A F V++ + + P RG+ L + VA+ VG I G I W Sbjct: 116 GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI-------HW 168 Query: 188 QWLFLLEGVPSVLVGILLLF 207 +L L+ + + V L+ Sbjct: 169 SYLLLIPMITIITVPFLMKL 188
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (284), Expect = 1e-32 Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 6/252 (2%) Query: 3 LSGKTAVVTGAGSGFGEGIAKTFAREGACVVVNDLHAAAAERVASEIALAGGRALAVAGD 62 + GK A +TGA G GE +A+T A +GA + D + E+V S + A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VSRGEDWQALRDAALAAFGSVQVVVNNAGTTHRNKPVLDITEAEYDRVYAINMKSLFWSV 122 V + G + ++VN AG + +++ E++ +++N +F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 QTFVPYFRGAGGGAFVNIASTAAVRPRPGLVWYNSTKGAMLTASKTLAAELGADRIRVNC 182 ++ Y G+ V + S A PR + Y S+K A + +K L EL IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 VNPVLGETGLTSEFMGVPDTPENR-----ARFVATIPLGRLSTPQDVANAALYLASDEAA 237 V+P ET + + E F IPL +L+ P D+A+A L+L S +A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 238 FVTGACLEVDGG 249 +T L VDGG Sbjct: 245 HITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.4 bits (99), Expect = 1e-06 Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 14/224 (6%) Query: 73 QKRELAAGTRTLESVLPAAAGVRSDAAAGRDAGAQVAAAAAAQREGAP-VTGRVKRVDAE 131 E A PA A + Q + + A T + + V E Sbjct: 1012 SNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKE 1071 Query: 132 RASGTPTPRSPRRATRATAEALDAGTPADEGEATQAPKERKATEAAKTSKTVRLSKAPKA 191 S ++ +E + T + AT KE KA + ++ V + + Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVE-KEEKAKVETEKTQEVPKVTSQVS 1130 Query: 192 PKAPKA--------PKAPKAPKAPKAPKAPKASKPPKASKPPK--PSKPPKPIAATAASQ 241 PK ++ P P + + +P K S +P+ + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 242 RTKTVRAPAANTTARANASPNAGTAVSAAPP-RGARAKQNRAAS 284 +V NTT A P + S P R R+ ++ + Sbjct: 1191 TGNSVVENPENTTP-ATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 3e-05 Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 3/141 (2%) Query: 174 SQQQADAARARHDARAARLKREREAAEARAAARRAASAAAAHAPASSAAAPAAPAADDAD 233 S+Q++ + RE A+ + +A + A + S Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 234 AKKRAIIAAALERARKKKEALAAQGAGPKNTEGVSAAVQAQIDAAEARRRRLAEQRDAAG 293 A A +E + ++ PK + + QA+ ++ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE---PARENDPTVNIKEPQS 1160 Query: 294 EPGRPDDANAAGDDASPPSKT 314 + D + S + Sbjct: 1161 QTNTTADTEQPAKETSSNVEQ 1181
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 1e-17 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 11/194 (5%) Query: 5 KIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVL 64 K K++ + TR+ IL A F+ G+ + +IA+ A +Y++F K LF+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 65 EYAFSALMEAERAIDLEGVAPVEAITR---LAHFVWDYYRDHPDLLRLLNNENLHEARYL 121 E + S + E E + ++ R + + LL + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 QKSTRIREMI-SPIVKTLDGVLERGQKAGLFRTDIDSLRFYVTLSGL------GYYMVSN 174 + + + ++ L+ +A + D+ + R + + G + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 175 RFTLAAIFGRDFSA 188 F L RD+ A Sbjct: 184 SFDLKKE-ARDYVA 196
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.4 bits (74), Expect = 0.001 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 30/126 (23%) Query: 6 LKIALFGATGMIGSRIAAEAARRGHQVTAL-------------SRNPAASGANVQAKAAD 52 +K + GA G IG ++ GHQV + +R + Q D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 53 LFDPASIA--------------AALAGQDVVASAYGPKQEEASKVVAVAKALVDGARKAG 98 L D + V S P S + +++G R Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLA--VRYSLENPHAYADSNLTGFLN-ILEGCRHNK 117 Query: 99 VKRVVV 104 ++ ++ Sbjct: 118 IQHLLY 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 9e-19 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 1 MSAARKVLLVEDDEAQANWAKLVLTRGRFDVTHCQTGGQAIRAMTKEVPDAVVLDMRLPD 60 M+ A +L+ +DD A L+R +DV R + D VV D+ +PD Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 VHGLEVLVWIRRNFFDVPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIA 117 + ++L I++ D+PV+V+S M ++A GA DY+ KP E + I Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 3e-11 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 13/159 (8%) Query: 5 VLIADDHPLVLLGVRHMLAGMG-DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPA 63 +L+ADD + + L+ G DV I A L +AA D+V+TD MP+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPD--- 59 Query: 64 ADGLAMLTAIRDGYPSVRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDEL----PRAL 119 + +L I+ P + V+V++ + + + GA L K DL EL RAL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 120 AAVYQGRPFVGTHAGAAGGGAMRGTDAPRQLSPREIEVV 158 A + + G + G A Q R + + Sbjct: 120 AEPKRRPS--KLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 20/331 (6%) Query: 41 AFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGRLLGRKRYF 100 +F VL+ ++NV+LP IA + W T++++ I + G L LG KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 101 VLCIVAFTICSFLCGIATDLGQLIVF-RVLQGLFGGGLQPNQQSIILDTF-PPEQRNRAF 158 + I+ S + + L++ R +QG G P +++ + P E R +AF Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAF 141 Query: 159 SISAVAIVVAPVLGPTLGGWITDNFSWRWVFLLNVPIGVLTSLAVIQLVEDPPWKRGRAR 218 + + + +GP +GG I W +LL +P+ +T + V L++ K R + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLLK-KEVRIK 196 Query: 219 GLSIDYIGITLIAIGLGCLQVMLDRGEDEDWFASTFIRTFAVLTVAGLVGATFWLLYAKK 278 G D GI L+++G+ + F +++ +F +++V + + Sbjct: 197 G-HFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 279 PVVDLSCLKDRNFALGCVTIATFAVVLYGSAVLVPQLAQQRLGYTAMLAG-LVLSPGALL 337 P VD K+ F +G + + G +VP + + + G +++ PG + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 338 ITLEIPIVSKLMPYVQTRFLVCFGFLLLAAS 368 + + I L+ +++ G L+ S Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 99.1 bits (247), Expect = 9e-25 Identities = 63/414 (15%), Positives = 134/414 (32%), Gaps = 91/414 (21%) Query: 51 KRPGKKPLVVLAIIVVLLLVGAFVW-WFATRNQVSTDDA--YTDGNAITIAPKVSGYVVA 107 + P + ++A ++ LV AF+ V+T + G + I P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 108 LAIDDNVYVHRGDLLLVIDKRDYQAQVDAARAQLGLAQAQLDAAQVQLDIA------HVQ 161 + + + V +GD+LL + +A ++ L A+ + Q+ ++ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 162 FPAQYRQAQA---QIEAAQASFRQALAAYERQHAVDARATSQQAIDVADAQRLTADANVA 218 P + ++ + ++ + ++ Q + + +D A+RLT A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-----KYQKELNLDKKRAERLTVLARIN 224 Query: 219 TARAQA----------------------------RTASLVPQQIRQAQTAVEQRRQQVLQ 250 + ++R ++ +EQ ++L Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 251 AQA-----------------------------QLEAAQLALSYCEVRAPSDGWITRRNVQ 281 A+ +L + +RAP + + V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 282 -LGSFLQAGAALFAIVTPQ---LWVTANFKESQLERMRAGDRVSVSVDAYP---NLELHG 334 G + L IV P+ L VTA + + + G + V+A+P L G Sbjct: 345 TEGGVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403 Query: 335 HVDSIQLGSGSRFSAFPPENATGNFVKIVQRVPVKIAIDGGLPRDPPLGIGLSV 388 V +I L + + G ++ + G ++ PL G++V Sbjct: 404 KVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAV 448
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 4e-06 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 5/150 (3%) Query: 258 LIDKFHLSVQAAQIHLFVFLAAVAAGTIIGGPVG----DRIGRKYVIWTSILGVAPFTLM 313 L+ S H + LA A PV DR GR+ V+ S+ G A + Sbjct: 31 LLRDLVHSNDVTA-HYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 314 LPYANLFWTTVLTIVIGVVLASAFAAIIVYGQELIPGKVGTVAGLFFGLSFGLGGVGAAV 373 + A W + ++ + + A Y ++ G F FG G V V Sbjct: 90 MATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 374 LGQLADATSIAFVYKVCSFLPLIGVLTVFL 403 LG L S + + L + LT Sbjct: 150 LGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Score = 34.0 bits (78), Expect = 0.001 Identities = 61/294 (20%), Positives = 109/294 (37%), Gaps = 19/294 (6%) Query: 48 LILAIYPMLKSEFSLS---FAQIGLITLTYQITASLLQPVIGLYTDKRPQPFSLPVGMGF 104 LI+ + P L + S A G++ Y + PV+G +D+ + L V + Sbjct: 23 LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAG 82 Query: 105 TLTGLLLMAFAPTFPFLLVAAALVGCGSSVFHPESSRVARMASGGRH----GLAQSLFQV 160 +MA AP L + + G + + +A + G G + F Sbjct: 83 AAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 161 GGNAGSSLGPLLAALIVIPHGQRSIAWFSAAALVAIFVLVQIGRWYRRHPAAKKKAAHAA 220 G AG LG L+ PH +F+AAAL + L H ++ A Sbjct: 143 GMVAGPVLGGLMGG--FSPH----APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 221 HPTLSRRQVGLALGVLVMLVFSKYFYLASINSY----FTFYLIDKFHLSVQAAQIHLFVF 276 L+ + + V+ L+ +F + + + + D+FH I L F Sbjct: 197 LNPLASFRWARGMTVVAALMAV-FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAF 255 Query: 277 -LAAVAAGTIIGGPVGDRIGRKYVIWTSILGVAPFTLMLPYANLFWTTVLTIVI 329 + A +I GPV R+G + + ++ ++L +A W +V+ Sbjct: 256 GILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVL 309 Score = 31.7 bits (72), Expect = 0.005 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 6/185 (3%) Query: 27 TVYPVLGAISFSHLLNDMIQSLILAIYPMLKSEFSLSFAQIGLITLTYQITASLLQPVI- 85 TV L A+ F L + + + I+ + F IG+ + I SL Q +I Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFG--EDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 86 GLYTDKRPQPFSLPVGMGFTLTGLLLMAFAPTFPFLLVAAALVGCGSSVFHPESSRVARM 145 G + + +L +GM TG +L+AFA L+ G + ++R Sbjct: 268 GPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQ 327 Query: 146 ASGGRHGLAQSLFQVGGNAGSSLGPLLAALIVIPHGQ--RSIAWFSAAALVAIFV-LVQI 202 R G Q + S +GPLL I AW + AAL + + ++ Sbjct: 328 VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387 Query: 203 GRWYR 207 G W Sbjct: 388 GLWSG 392
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.6 bits (134), Expect = 7e-11 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 11/154 (7%) Query: 80 RIAVEQAQAAVAARRAELQMRRADAARRADLDALVVSKESRENSAQTASSAEAQYQQALA 139 + ++ +++ A L + E + Q Sbjct: 261 YVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ----TTDNIGLLTL 316 Query: 140 ALDAAKLNLERTRVVAPVDGYVTNLQVF-KGDYASAGQAKLAIV-DSHSFWVYGYFEETK 197 L + + + + APV V L+V +G + + + IV + + V + Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKD 376 Query: 198 LPRVKIGAKAEMRLMS-----GGVLKGHVESISR 226 + + +G A +++ + G L G V++I+ Sbjct: 377 IGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Score = 46.7 bits (111), Expect = 5e-08 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 46 VAPDVSGAVVELPVHDNQFVKQGDLVMQIDPSHFRIAVEQAQAAVAARRAELQMRRA--D 103 + P + V E+ V + + V++GD+++++ + Q+++ R E + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 104 AARRADLDALVVSKE------SRENSAQTASSAEAQYQQALAALDAAKLNLERTR 152 + L L + E S E + S + Q+ +LNL++ R Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.007 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 483 PAGDARRTGASGASGASGASRASRASGASGASGASGASGASGASGASGASGASGASGASS 542 P G GAS SG S S + G SG+ G G G +G SG +G + Sbjct: 24 PTGLGVGGGASDGSGWS--SENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 543 TAGASATASASAAGHAPAGAAAPASPAGIRAAASARASMPA 583 +A A+ A A P GA A A ++A A + A Sbjct: 82 SAVAAPVAFGFPALSTP-GAGGLAVSISAGALSAAIADIMA 121 Score = 32.0 bits (72), Expect = 0.008 Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 15/124 (12%) Query: 485 GDAR--RTGASGASG-----ASGASRASRASGASGAS-------GASGASGASGASGASG 530 GD R TGA SG +G AS SG S G SG+ G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 531 ASGASGASGASSTAGASATASASAAGHA-PAGAAAPASPAGIRAAASARASMPAPAAAAT 589 G +G SG S G + +A A+ PA + A + +A A ++ A AA Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAAL 123 Query: 590 APAF 593 F Sbjct: 124 KGPF 127 Score = 29.7 bits (66), Expect = 0.040 Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 10/115 (8%) Query: 508 SGASGASGASGASGASG-----ASGASGASGASGASGASSTAGASATASASAAGHAPAGA 562 SG G +GA SG +G GAS SG SS S S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 563 AAPASPAGIRAAASARASMPAPAAAATA---PAFASPVAGASTPMPAATAAARAA 614 G S + AA A PA ++P GA + +A A +A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTP--GAGGLAVSISAGALSA 114
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 28.6 bits (64), Expect = 0.026 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 227 EALAAGIREGMGIGVLPLYSAIAGLRNGD 255 + A IRE + +G+ L SAI L + Sbjct: 138 QIAAGKIRENIPLGLPALDSAITTLFYYN 166
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 2e-05 Identities = 26/174 (14%), Positives = 51/174 (29%), Gaps = 9/174 (5%) Query: 498 RTRAHAP--ARASRVVPPASPPVSPPVSRRACKVRHRRARRRRSRARARPRASRDGPTAR 555 R + P + ++ V + + V R P + P + Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATP-SE 1035 Query: 556 RPSCRARCLPQD------KSKSASTPTAACTRCAATRRAVRARAARPSGSARSRPGAAAR 609 A Q+ + A+ TA A ++ + + A+S Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 610 ATLPTRRRARSARRGKARPRARRAASRRRARSCGRGAELRRGACEPRAERVRER 663 T T+ A + KA+ + + S + + +P+AE RE Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.6 bits (71), Expect = 0.012 Identities = 19/83 (22%), Positives = 39/83 (46%) Query: 361 ELVQVLEDLAVELRGHQVIGEEALQRILERREHRERGEEREGDRHERHEREHRREREAAR 420 E+ + +DL LR + + +E +++ + ++ + E + ++ E +EA R Sbjct: 606 EVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANR 665 Query: 421 DLRDAVFRAALRGEARETLDGVE 443 D R + L+G RE D +E Sbjct: 666 DARAIAYAQNLKGIKRELSDKLE 688
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.8 bits (191), Expect = 4e-19 Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 19/249 (7%) Query: 40 VLVIGGSSGIGAAAARAFAVLDADVTIASRDANKLAGAARAIDG-PRPVRQAVLDTTDAP 98 + G + GIG A AR A A + + KL ++ R D D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 99 AVDA----FFAEAGPFDHVVMSAAHTPGGPVRKLPLADAQAAMDSKFWGAY----RVARA 150 A+D E GP D +V A G + L + +A G + V++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 151 ARIAPGGSLTFVSGFLSVRPSASAVLQGAINAALEALARGLALELAP--VRVNTVSPGLV 208 GS+ V + P S + AA + L LELA +R N VSPG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 209 ATPLWSKL--DDAAREAMYASAAAR----LPARRVGQPEDIANAIVYLAATR--YATGST 260 T + L D+ E + + +P +++ +P DIA+A+++L + + + T Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHN 250 Query: 261 VLVDGGGAI 269 + VDGG + Sbjct: 251 LCVDGGATL 259
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.039 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 10/102 (9%) Query: 35 ALGAAAAPGRALAAGATATADTGAASLAGGSLRRSPAGEP---------EAAHGAFWPNG 85 A R +G + +A G GG+ R +P P A A Sbjct: 319 AAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRV 378 Query: 86 ARLVISISMQFEAGGQPPTGADSPFPPVDFPPQVPVDLASAT 127 + +++ A Q A P + P+D+A A+ Sbjct: 379 LPEPVKLTLTGGADAQGDIVATEL-PSIPGTSIGPLDVALAS 419
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.025 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 22 AATLAPAHADTTGLIEPAHLSVDGSLPAAQRDAQILAARRYDTFWHNGDPALARAALADD 81 AA+LA A +D ++ S + A A + + R W + P R AL D Sbjct: 274 AASLAQAISDAIAVLGRVLASAPSVM--AVGFASLTYSSRTAEQWQDQTPDSVRYALGMD 331 Query: 82 FADRTPPP 89 A PP Sbjct: 332 AAKLGLPP 339
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (341), Expect = 8e-37 Identities = 84/396 (21%), Positives = 159/396 (40%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRIGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D++G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASIILFVISSWMCGLAPT-LPFLLASRVLQGAVAGPMIPLSQALLLSSYPRAKAPMALA 145 L II+ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWSMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAAAVTWMIYRSRESAVRRAPI 205 L + GP +GG I+ W ++ IP+ I V +++ ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM-ITIITVPFLMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVIWVGSLQIMLDKGKDLDWFASTTIVVLALTALIAFAFFVVWELTAEHPVVD 265 D G+ L+ + G + ML F ++ + + ++++F FV P VD Sbjct: 200 DIKGIILMSV--GIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRMRNFSGGTIALSVGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGFFAILL 324 L + F G + + +G G + ++P ++ + + G +++ P I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKFLSRTDPRYIATAAFLTFALCFWMRSRYTTGVDEWSLMAPTFVQGIAMAGFFIP 384 + G + R P Y+ ++ F S + + FV G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGHRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 71.4 bits (175), Expect = 1e-15 Identities = 36/270 (13%), Positives = 85/270 (31%), Gaps = 28/270 (10%) Query: 94 ADSQVALQQAEANLAQTVRQVRGLYVNDDQYRAQVALRQSDLS--------------KAQ 139 + Q Q E NL + + + ++Y + +S L Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVL 255 Query: 140 DDLRRRLAVAQTGAVSQEEISHARDAVKAAQASLDAAGQQLASNRALTANTTVADHPNVL 199 + + + V + ++ + +A+ Q + L N+ Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN-EILDKLRQT--TDNIG 312 Query: 200 AAAAKVRDAYLNNARNTLPAPVTGYVAKRSVQ-VGQRVSPGTPLMSVVPLNAV-WVDANF 257 ++ + + APV+ V + V G V+ LM +VP + V A Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 258 KEVQLKHMRIGQPVELTADIYGSSVKYHGKVIGFSAGTGAAFSLLPAQNATGNWIKVVQR 317 + + + +GQ + + + + +G ++G + + +V Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTR--YGYLVG-------KVKNINLDAIEDQRLGLVFN 423 Query: 318 LPVRVELDPKELKEHPLRIGLSMQVDVDIK 347 + + +E + + + M V +IK Sbjct: 424 VIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Score = 47.1 bits (112), Expect = 8e-08 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 28/207 (13%) Query: 29 VIAIAAIAYGLYYLLVARFHETTDDAYVNGNVV------QITPQVTGTVIAVKADDTQTV 82 ++A + + + +++ + A NG + +I P V + + ++V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 83 KSGDPLVVLDPADSQVALQQAEANLAQT---------------VRQVRGLYVNDDQYRAQ 127 + GD L+ L ++ + +++L Q + ++ L + D+ Y Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 128 VA----LRQSDLSKAQ-DDLRRRLAVAQ-TGAVSQEEISHARDAVKAAQASLDAAGQQLA 181 V+ LR + L K Q + + + + E + + +L Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 182 SNRALTANTTVADHPNVLAAAAKVRDA 208 +L +A H VL K +A Sbjct: 239 DFSSLLHKQAIAKH-AVLEQENKYVEA 264
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (435), Expect = 5e-48 Identities = 102/435 (23%), Positives = 172/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E V + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVINKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I INKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AARDGDMRPLFEAILQHVPVRP 198 + SL P A + + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGDVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 QGLERVQVDSAEAGDIVLINGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSP 318 E ++D A +G+IV++ E + + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 33.7 bits (77), Expect = 0.002 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPA 446 V+++ EPY + E+ + + ++D L IPA Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQL-KNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.028 Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQVIATID---TEAKAGAAAAAAGAADVQPAAAPVAA 104 E+ ++ +++ +G++V V+ + EA ++ A ++ + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 105 PAPAAQPAAAAASSTAAASPAAS 127 + S Sbjct: 158 RSIELNKLPELKLPDEPYFQNVS 180
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.7 bits (71), Expect = 0.004 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 214 LMNQLKLAPAVRAEIRNDATRIAAAARARQRA-LARPGAPGAAASAGATLAASAAGSNGG 272 MN L A A + R AAA A+++A AA A T A A GS Sbjct: 203 RMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQ--AAIRAANTYAMPANGSVVA 260 Query: 273 AAAGKGAVAGAGASAPGAAATATAAA 298 AAG+G + A +A A A + A A Sbjct: 261 TAAGRGLIQVAQGAASLAQAISDAIA 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 297 bits (762), Expect = 2e-98 Identities = 127/461 (27%), Positives = 201/461 (43%), Gaps = 53/461 (11%) Query: 4 FDVEVIRADNEELSAERTAMRPSLAIISVSMIE-SGAAFLRTWQAE-IGMPVVWVGA--- 58 +DV + ++ L A L + V M + + L + +PV+ + A Sbjct: 28 YDVRIT-SNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNT 86 Query: 59 -----------ARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKALEPST 107 A D+ P P + + ++ + +++ + + + Sbjct: 87 FMTAIKASEKGAYDYLPK--PFDLTELIGIIGRA------LAEPKRRPSKLEDDSQDGMP 138 Query: 108 LVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYGMGEFVPVNCG 167 LV S MQ + + + D +++ GE+G GKE +A+ LH+ + + G FV +N Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-YGKRRNGPFVAINMA 197 Query: 168 AIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLED 227 AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+P+ Q +LLRVL+ Sbjct: 198 AIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQ 257 Query: 228 GAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVD 287 G +G P++ D R+VAA+NK L Q + GLFR DLYYRL V+ L +P L +R D Sbjct: 258 GEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDR-AED 316 Query: 288 KIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGV------- 340 L + FV E + E + +PGNVREL NL R+ Sbjct: 317 IPDLVRHFVQQAEKEGL--DVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVI 374 Query: 341 -----------------TVRQTGGWDTARLQRLIAHARSAAQPAPAESAPDVFVDRSKWD 383 + + + + + + ++ P + Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLA 434 Query: 384 MTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQI 424 E ++AAL A + A LG++R L +K+R+ + Sbjct: 435 EMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.043 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 9/108 (8%) Query: 119 LFQQKAFWRVIRTASEARAEAVYRDFAKQSETLAVNELQAAKLESQKALTDRQIAVA--- 175 ++A V + + T K E K T++ V Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 176 ------QERASRLQADLSIAREQRAAVATRQKDKLDETVALREQKSER 217 QE++ +Q ARE V ++ T A EQ ++ Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.017 Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 7/85 (8%) Query: 76 GRGPRAGGAHGGGGRPGGREGGGHGPYGSHG----GSREPRGDGGGYGAREPRGDGGYGS 131 GRG G G GG G G G S G P G G G G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG---IHWGGGSGH 62 Query: 132 RESRGDGGYGSREPRGDGGYGSREP 156 G+G G G P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 3e-15 Identities = 21/83 (25%), Positives = 35/83 (42%) Query: 4 RQASRQSGGTKARILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAM 63 R+ +++ T+ ILD A LF + G + S+ +I A V A+ +HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 64 LSRRLDQLNEERLRILDRFDAQL 86 + E L +F Sbjct: 63 WELSESNIGELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.2 bits (146), Expect = 4e-12 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 12/261 (4%) Query: 61 IGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAALLVLRTLFGVAMGGEWGVG 120 A + G L+D FGRRP L++++A ++ AP L L + R + G+ G V Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVA 116 Query: 121 SALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYPYIGWRGMFMIGVLPALLVLY 180 A + R G + A + G + V+ GL+ + F L L L Sbjct: 117 GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLT 176 Query: 181 VRAKVPES-PAWKQMEKRARPGLVATLKQNWKLSIYAVVLMTAF--NFFSHGTQDLYPTF 237 +PES ++ +R +A+ + +++ A ++ F L+ F Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 238 LREQHHFDPHTVSWITIVLNI-GAIVGGLTFGWLSERIGRRRAI---FIAAMIALPVLPL 293 ++ H+D T+ I ++ + G ++ R+G RRA+ IA +L Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 294 ----WAFSTGALALAAGAFLM 310 W + LA+G M Sbjct: 297 ATRGWMAFPIMVLLASGGIGM 317
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 306 bits (785), Expect = e-107 Identities = 155/255 (60%), Positives = 195/255 (76%) Query: 24 ALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVSYIA 83 ALP + NWIAVWRRNY+ W+K A+AS+ G+LA+P+IYLFGLG GLG+MVG V GVSY A Sbjct: 8 ALPGGSLNWIAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTA 67 Query: 84 FLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIVWAASKAML 143 FLAAG V +S M +A+FE++Y+ F RM QRTWEA+++T L LGDIVLGE+ WAA+KA L Sbjct: 68 FLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAAL 127 Query: 144 SGAAIMLVAGVLGYAKFPSMLVALPVIALAGIAFASLAMIVTALAPSYDFFMFYQTLALT 203 +GA I +VA LGY ++ S+L ALPVIAL G+AFASL M+VTALAPSYD+F+FYQTL +T Sbjct: 128 AGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVIT 187 Query: 204 PMLLLSGVFFPLAQLPEFAQHIAHALPLSNAVDLIRPAMLDRPATDVARHVAILAAYALG 263 P+L LSG FP+ QLP Q A LPLS+++DLIRP ML P DV +HV L Y + Sbjct: 188 PILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247 Query: 264 GFFVCARLFRRRMMR 278 FF+ L RRR++R Sbjct: 248 PFFLSTALLRRRLLR 262
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.9 bits (64), Expect = 0.019 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Query: 122 PHARPGQRP-----PELNPPSDPASAAAAGTGAPPGNAGVPGSASG 162 P+ PG RP P+LNP ++P + GT P + VP +G Sbjct: 343 PNENPGTRPNPEPDPDLNPDANPDTDGQPGTR--PDSPAVPDRPNG 386
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.0 bits (62), Expect = 0.039 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 20/146 (13%) Query: 25 TARQQ---QVFDLIRRAI--ERSGFPP---TRAEIAAELGFSSPNAAEEHLRALARKG-- 74 R+Q +V + AI +A LG EE Sbjct: 685 QRRRQFSIRVLVPLAEAILSACEDAEEADRIDIPVADVLGLVPTPVGEEGDEEGHEDASP 744 Query: 75 -----VIELAAGASRGIRLLGIDDAPHQLTLPHAALMQLSLPLVGRVAAGSPILAQEHIS 129 +++ + + G A L + + L + R + + Sbjct: 745 QVTDEILDYLEKPATQLGAEGWRLADMVL-----SASREDLDAIAREVFQKVLGNMCEVI 799 Query: 130 QHYACDPALFSSKPDYLLKVRGLSMR 155 H CD L + +P L VR + Sbjct: 800 DHLGCDVVLLTGRPSRLPAVRAIVEE 825
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.036 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 23/203 (11%) Query: 55 EQRRDFRFHRHVAGDEDHRAVFAERAREREREARQQRGR-----HGRQHDAAEREPARRA 109 +QR+D R D H AER ER R Q RQ A + +R++ Sbjct: 297 KQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKS 356 Query: 110 E--ACGRLLLLALEILENGLHGAHDERQADEGQR-----DEHAERRERDLDPERREI-AA 161 E A + L A+ ++ AHD G R A+R + D++ ++ AA Sbjct: 357 ELDAANKTLADAIAEIKQFNRFAHDPMAG--GHRMWQMAGLKAQRAQTDVNNKQAAFDAA 414 Query: 162 DPAVLRVDGRERDARDRGRQRE---RQVDDRVDEPLERERVA-----HQHPCDEKAEHRV 213 D A + +++E R ++ +++ + R H + K E+ Sbjct: 415 AKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKDYGHDYHPAPKTENIK 474 Query: 214 HERAAERGRKREPVRREHARRRR 236 + G + P + +R+R Sbjct: 475 GLGDLKPGIPKTPKQNGGGKRKR 497
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.1 bits (73), Expect = 8e-04 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 18/148 (12%) Query: 24 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAA---- 79 L+ +W L +L DL L + L+ L G A +GA A Sbjct: 138 LLLTWVLVALTFIDLDKMLLP--DQLTLPLLWGGLLFNLLGGFVSLGD-AVIGAMAGYLV 194 Query: 80 ----FALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGR 135 + + + GD KL A + W G V + G +G I Sbjct: 195 LWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRN 254 Query: 136 VPRVLAWFAPARGVPYGVALAAGGLLAV 163 ++ +P+G LA G +A+ Sbjct: 255 H-------HQSKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 144 bits (364), Expect = 3e-39 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 16/283 (5%) Query: 170 VVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA------- 222 +V + E ++ +L + RP QV + I EV LGI W+ A Sbjct: 322 IVTAAPDVMNDLERVIAQLDIRRP-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN 380 Query: 223 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDG--VLDALDQEGLITM 280 SG + G ++ S A S G Y + +L AL + Sbjct: 381 SGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLLTALSSSTKNDI 439 Query: 281 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGA----ITIQFKPYGVSLDFTPTVLADNR 336 LA P++ + A+F G E P+ TT T++ K G+ L P + + Sbjct: 440 LATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDS 499 Query: 337 ISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLA 396 + L++ EVS + S T+ + R V+ V + SG++ +GGLL SD Sbjct: 500 VLLEIEQEVSSVADAASSTSSDLGA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTAD 558 Query: 397 ELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGE 439 ++P L +PV+G LF S + K +++ + P +++ + Sbjct: 559 KVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYR 601
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%) Query: 22 GARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGA 81 GA ++ DAA V+ ++ + + ++ DV Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIA--AGDGDLVVTDVV-- 56 Query: 82 AMP----LSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPL----TVEL 133 MP L R+ P + V+V+ +N G DYL KP + + Sbjct: 57 -MPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 134 VHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADR 178 + RAL+ + + + G S A+ + R Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVG----RSAAMQEIYRVLAR 155
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.4 bits (68), Expect = 0.021 Identities = 16/59 (27%), Positives = 17/59 (28%) Query: 17 GAHEFAPDAAPAGAAPAGGHASAPDASGAARAREPAGVSGASAPGGAPQSGVAPSGHRP 75 G H AA A A V G + PGGA G P G P Sbjct: 232 GGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGP 290
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.005 Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 38 SVAESALAAGDAELAATLFERALKADPRSLPAQVGLGDAMYQTGELARAGVLYAQAAAAA 97 S+A + +G E A +F+ D +GLG G+ A Y+ A Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 98 PDDPRAQLGLARVALRERHLDDA 120 +PR A L++ L +A Sbjct: 101 IKEPRFPFHAAECLLQKGELAEA 123
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.7 bits (71), Expect = 0.004 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 40 RVAAARNELQNAADAAALAGAASLEAGAGAPAWAAAASAAAAALSLNASDGAALSSGDVQ 99 A A+ + + A A AA+ A PA + + AA + + GAA + + Sbjct: 226 AAAEAKRKAEEQARQQAAIRAANTYA---MPANGSVVATAAGRGLIQVAQGAASLAQAIS 282 Query: 100 TGYWNVTGVPAGLEPTTLAPGEYDVPAVQATVTRAPNQNGGPLSLLMGGLLGLVGTPAAA 159 V G P+ +A G + T + +Q + +G +G P + Sbjct: 283 DAI-AVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSV 341 Query: 160 TAVAVAGAPATV 171 AVA A TV Sbjct: 342 NLNAVAKASGTV 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 117 bits (295), Expect = 5e-35 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 4/210 (1%) Query: 1 MARKTREESLNTKNRILDAAELVLLEKGVGQTAMADIAEAAGMSRGAVYGHFNGKIEVCV 60 MARKT++E+ T+ ILD A + ++GV T++ +IA+AAG++RGA+Y HF K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVCDRAFSRAVEGFDLSDERPA---LATLRLAASHYLHQCGEPGSMQRVLEILYMKCEQS 117 + + + S E + L+ LR H L + ++EI++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENAPLMRRRALYELQTLRIAKALLRRAVAAGELDASLDVHLAGVYLLSLLEGIFGSMIW 177 E A + + + L++ + L+ + A L A L A + + + G+ + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 TTRLRGDRWRDAEAMLDAGVDTLRASPALR 207 + D ++A + ++ P LR Sbjct: 181 APQSF-DLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 5/133 (3%) Query: 67 EVRARVAGIVTARTYEEGQEVKRGAVLFRIDPAPFKAARDAAAGALEKARAAHLAALDKR 126 E++ IV +EG+ V++G VL ++ +A +L +AR Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 RRYDELVRDRAVSERDHTEALADERQAKAAVASARAELA-----RAQLQLDYATVTAPID 181 R + + E + + + + + + Q +L+ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 182 GRARRALVTEGAL 194 R E Sbjct: 218 TVLARINRYENLS 230 Score = 35.2 bits (81), Expect = 4e-04 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 10/100 (10%) Query: 102 KAARDAAAGALEKARAAHLAALDKRRRYDELVRDRAVSERDHTEALADERQAKAAVASAR 161 LE+ + L+A ++ + +L + E L RQ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK---------NEILDKLRQTTDNIGLLT 315 Query: 162 AELARAQLQLDYATVTAPIDGR-ARRALVTEGALVGQDQA 200 ELA+ + + + + AP+ + + + TEG +V + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1079 bits (2791), Expect = 0.0 Identities = 516/1032 (50%), Positives = 701/1032 (67%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSLYATYPGASAQVVEES 60 MA FFI RP+FAWV+++ +M+ G AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAVIEREMNGVPGLLYTSATS-SAGQASLSLTFKQGVSADLAAVDVQNRLKIVEARLPE 119 VT VIE+ MNG+ L+Y S+TS SAG +++LTF+ G D+A V VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGKVQFWGA 179 V++ GIS+EK++ + ++ S++ + ++ +Y ++NV L R+ GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAATVLADAPL 239 +YAMRIW D + LT D+ + ++ N ++ G +G + + A+++A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSFVNGKTATGMGIKLAPGSNAV 299 P+ FG + LR +DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359 T K ++A + EL FFP G+K PY+T FV++S+ +VV TL EA +LVF VM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N RATLIPT+ VPV LLGTF + A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALAVSIGF 479 +E+KLPP EAT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF+ + ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVADDHHE-KDGFFGWFNRFVARSTHRYTRRVGRVLERPLRW 538 S +AL LTPALCATLLKPV+ +HHE K GFFGWFN S + YT VG++L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGTPLAETMQSVRRVEEYVRTH 598 L++Y + A +L +LP++FLP+EDQG F+ M+ P G T + + +V +Y + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 SPSAY--TFALGGYNLYGEGPNGGMIFVTMKDWKERKRARDQVQAIIAEINAHFAGTPNT 656 + F + G++ G+ N GM FV++K W+ER + +A+I + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 MVFAINMPALPDLGLTGGFDFRLQDRGGLGYGAFVAAREKLLAEGRKDPV-LTDLMFAGT 715 V NMPA+ +LG GFDF L D+ GLG+ A AR +LL + P L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMEEINATLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DAADVTKLRVRNAKGEMVPLAAFATLHWTMGPPQLTRYNGFPSFTINGAASAGHSSGEAM 835 DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G A+ G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 A +E +AS LPAG GY W+G SY+ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLA 954 MLVVPLG++G + TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA + GA SGAQ A+G GV+GG++SATL AIF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVCVGRVF 1026 VP+FFV + R F Sbjct: 1021 VPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 2/104 (1%) Query: 379 APRLTLPIFAGGRNRANLDVADARKHIAVAEYEKTIQTAFREV--ADALAARDQIDAQLA 436 P L LP +N + +V I Q +E+ A R + A++ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 437 AQQAVYGADAERLRLAQRRYDSGVASYLELLDAQRSTFESGQEL 480 + + + RL + +L+ + E+ EL Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 670 bits (1729), Expect = 0.0 Identities = 224/842 (26%), Positives = 350/842 (41%), Gaps = 60/842 (7%) Query: 2 FMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVNDVFFGLQPIE 61 F A + FN FL+ D + DLS+F PGTY +D+ +N+ + + + Sbjct: 36 FAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVT 95 Query: 62 FVAHDDGQGARACVAPELVAQFGLKKSLVENLPRTMGGRCADLASL-DGVTIRYQKGEGR 120 F D QG C+ +A GL + V + C L S+ T + G+ R Sbjct: 96 FNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQR 155 Query: 121 LKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANANHAFGRGAQQNNAVQAYGTI 180 L +TI QA + Y+PPE W G++ +L+Y + N R ++ Sbjct: 156 LNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYN--FSGNSVQNRIGGNSHYAYLNLQS 213 Query: 181 GANWGAWRFRGDYQAQ-TRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFGEIYVDSDIF 239 G N GAWR R + + + ++ ++ + R + +RS L+ G+ Y DIF Sbjct: 214 GLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIF 273 Query: 240 STFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTKVSPGAFALS 299 + G + SDD MLP S RG+AP++ G+AR A V + Q+ +Y + V PG F ++ Sbjct: 274 DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTIN 333 Query: 300 NLN-TSVQGTLDVVVEEEDGTVQRFQVATAAVPFLAREGQLRYKTAIGQPRTFGGAGITP 358 ++ G L V ++E DG+ Q F V ++VP L REG RY G+ R+ P Sbjct: 334 DIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKP 393 Query: 359 WFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFGALSADVTHARATLWWNGR 418 F + +GLP T+YGG A Y + FG+G++ G GALS D+T A +TL + Sbjct: 394 RFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTL-PDDS 452 Query: 419 TKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGL----------- 467 G S R Y+K ++ +++ GYR+S Y NF + Sbjct: 453 QHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVK 512 Query: 468 ----------ANGKQRYSAMLSKRFGDTST-YFSYDQTTYW-ARPSDRRIGVTLTRAFSL 515 N + + ++++ G TST Y S TYW D + L AF Sbjct: 513 PKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFED 572 Query: 516 GALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGER-----------QTLTSSVSAGEGG 564 + L +S + G ++L +P + + S+S G Sbjct: 573 I---NWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629 Query: 565 TSVNAGYLYDGA---NGRTYQLYGGTTDGRASANASLRQRTPSYQ-----LTAQASTVAN 616 N +Y N +Y + G G + S T +Y+ S ++ Sbjct: 630 RMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYS-HSD 688 Query: 617 AYASASLEVDGSFVATRYGVTAHANGNAGDTRLLVSTDGVPGVPLS-GSYARTNARGYAV 675 V G +A GVT DT +LV G + + RT+ RGYAV Sbjct: 689 DIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQTGVRTDWRGYAV 746 Query: 676 IDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFNAARGRNVFVTLTGDG 735 + + Y + L + D+ N + V T GAI F A G + +TLT + Sbjct: 747 LPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNN 806 Query: 736 GAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICT---PAALPDT 792 P+PFGA V + + GIV + G YL+ + K+ V+ G + LP Sbjct: 807 K-PLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPE 864 Query: 793 LQ 794 Q Sbjct: 865 SQ 866
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 7e-14 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 10/203 (4%) Query: 5 RLTREQSKDLTRERLLSAAHAIFTKKGYVAASVEDIASAAGYTRGAFYSNFRSKAELLIE 64 R T++++++ TR+ +L A +F+++G + S+ +IA AAG TRGA Y +F+ K++L E Sbjct: 3 RKTKQEAQE-TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 LLKRDHEEAEADLQKIFE--SGGTREQMEA---HALEYYSQFFRNNPAFLLWGEAKLQAT 119 + + + G + H LE R + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 120 RDAKFRARFNEFVKEKRDRFTHYILTFAERVGTPLLLPADVLALGLMSLCDGVQSYHAAD 179 A + E DR + E P L A+ + G+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 180 PRHVTGDAAQQVLAGFFARVVLA 202 P+ D ++ A + ++L Sbjct: 182 PQSF--DLKKE--ARDYVAILLE 200
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 1e-04 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 32/200 (16%) Query: 1 MNRSGSRAALLIGVALIAAACHRKEAAPSAPRPVVAVPAQADGAAAAVSLPGEIQPRYAT 60 + SR L+ ++ + +VA A+G EI+P Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVAT---ANGKLTHSGRSKEIKP---- 101 Query: 61 PLSFRIAGKLVER-KVRLGDIVKKGQVVALLDTSDVARSAASAQAQLDAATHALTFAQQQ 119 I +V+ V+ G+ V+KG V+ L A+A +L A+ + Sbjct: 102 -----IENSIVKEIIVKEGESVRKGDVLLKLTALG-------AEADTLKTQSSLLQARLE 149 Query: 120 RERDRA--QARENLIAPAQLEQTENAYASARAQRDQAAQQLA----------LAKNQLQY 167 + R + ++ E P E + + + L + +L Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 168 ATLVADHAGYITAEQADTGQ 187 A+ + Sbjct: 210 DKKRAERLTVLARINRYENL 229 Score = 34.8 bits (80), Expect = 5e-04 Identities = 10/71 (14%), Positives = 27/71 (38%) Query: 100 ASAQAQLDAATHALTFAQQQRERDRAQARENLIAPAQLEQTENAYASARAQRDQAAQQLA 159 + A+++ + + + + + + IA + + EN Y A + QL Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 160 LAKNQLQYATL 170 ++++ A Sbjct: 277 QIESEILSAKE 287
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 433 bits (1114), Expect = e-137 Identities = 223/1062 (20%), Positives = 423/1062 (39%), Gaps = 75/1062 (7%) Query: 13 LSAWALRHQALVVYLIALATIAGILAYSRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQ 72 ++ + +R L + +AG LA +L ++ P + + +PGA A+ VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 73 VTDRIGRKLQEMPAIDYLRSYS-RPGESMLFFAMKDSAPVKDVPQTWYQVRKKVGDISMT 131 VT I + + + + Y+ S S G + + QV+ K+ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 132 LPPGVQGP-FFNDEFGDVYTNIYTLEGDG--FSPAQLHDYAD-QLRVVLLRVPGVAKVDY 187 LP VQ ++ Y + D + + DY ++ L R+ GV V Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 188 FGDPDQRIFVEIDNTRLARLGISPQQIAQAINAQNDVASPGVLTAAHD------RVFIRP 241 FG + + +D L + ++P + + QND + G L I Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 242 SGQYESVAAIADTLIRVN--GRTFRLGELATIKRGYDDPPVTQMRTIGRNANGRAVLGIG 299 ++++ +RVN G RL ++A ++ G + + NG+ G+G Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG------GENYNVIARINGKPAAGLG 290 Query: 300 VTMQPGGDVIRLGKALDASAKALQAQLPAGLALTEVSSMPHAVARSVDDFLEAVAEAVAI 359 + + G + + KA+ A LQ P G+ + V S+ + ++ + EA+ + Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 360 VLIVSLVSLG-LRTGMVVVISIPVVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAI 418 V +V + L +R ++ I++PVVL T + F ++ +++ +VLA+GLLVDDAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 419 IAVEMMA-VKLEQGFSRARAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRSI 477 + VE + V +E A + + ++ +V + F+P+A STG R Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 478 FEVSAIALIASWFAAVVLIPLLGYHMLPERKHPRQDAAGAPHAP-DAAHDHAHGHDIYDT 536 A+ S A++L P L +L + G + DH+ Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS-------V 523 Query: 537 RFYTRLRVWIKWCIERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEG 596 YT + + L I + + F +P F P D+ L ++LP G Sbjct: 524 NHYTNS---VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG 580 Query: 597 ASFNATLKEAERLEKLIAK--RPEIDHAVNFVGSGAPRFYLPLDQQLQLPNFAQFVITAK 654 A+ T K +++ K + ++ G Q N ++ K Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG---------QAQNAGMAFVSLK 631 Query: 655 SVDAR---EKLSAWLAPVLREQFPAARTRISRLENGPPV-------GYPVQ-FRVSGDSI 703 + R E + + + + R N P + G+ + +G Sbjct: 632 PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGH 691 Query: 704 ATVRAIAEKVAATMR---ADARATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASF 760 + ++ A + D + E+DQ KA+ L VS D+ Sbjct: 692 DALTQARNQLLGMAAQHPASLVSVRPNGLEDTA---QFKLEVDQEKAQALGVSLSDINQT 748 Query: 761 LAMTLSGTTLTQYRERDKLIAVDLRAPRAQRIDPASLAGLAMPTPNG-PVPLGSLGRFHD 819 ++ L GT + + +R ++ + ++A R+ P + L + + NG VP + H Sbjct: 749 ISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW 808 Query: 820 TLEYGVVWERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEIGGSVEE 879 + + P++ +Q + G + A ++ L ++LP G + G + Sbjct: 809 VYGSPRLERYNGLPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDWTGMSYQ 864 Query: 880 STKGQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGF 939 A + + + V L +S+S + V+L PLG++GV+ LF + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 940 VAMLGVIAMFGIIMRNSVILVDQIEQDIAA-GHGRFDAIVGATVRRFRPITLTAAAAVLA 998 M+G++ G+ +N++++V+ + + G G +A + A R RPI +T+ A +L Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 999 LIPLLRSNFFG-----PMATALMGGITSATVLTLFFLPALYA 1035 ++PL SN G + +MGG+ SAT+L +FF+P + Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 84.1 bits (208), Expect = 2e-18 Identities = 91/535 (17%), Positives = 182/535 (34%), Gaps = 67/535 (12%) Query: 550 IERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEGASFNATLKEAER- 608 I R + I L + +P +P+ P + V P A + + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-----GADAQTVQDT 60 Query: 609 ----LEKLIAKRPEIDH---AVNFVGSG--APRFYLPLDQQLQLPNFAQFVITAKSVDAR 659 +E+ + + + + GS F D P+ AQ V + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD-----PDIAQ-------VQVQ 108 Query: 660 EKLSAWLAPVLREQFP-AARTRISRLENGPPVGYPVQFRVSGDSIATVRAIAEKVAATMR 718 KL P + + +E V VS + T I++ VA+ ++ Sbjct: 109 NKLQL-----ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK 163 Query: 719 ADAR----ATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASFL--------AMTLS 766 +VQ A+ ++R LD + ++ DV + L A L Sbjct: 164 DTLSRLNGVGDVQLF---GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLG 220 Query: 767 GTTLTQYRERDKLIAVDLRAPRAQRIDPASLAGLAMPTPNG-PVPLGSLGRFHDTLE-YG 824 GT ++ + I R + +L +G V L + R E Y Sbjct: 221 GTPALPGQQLNASIIAQTRFKNPEEFGKVTLRV----NSDGSVVRLKDVARVELGGENYN 276 Query: 825 VVWERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEI----GGSVEES 880 V+ + +P + + GA +D AI AKL L+ P G ++ V+ S Sbjct: 277 VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLS 336 Query: 881 TKGQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGFV 940 + +++ L + + LQ+ L+ + P+ ++G L FG + Sbjct: 337 I--HEVVKTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393 Query: 941 AMLGVIAMFGIIMRNSVILVDQIEQDIAAGHGRF-DAIVGATVRRFRPITLTAAAAVLAL 999 M G++ G+++ +++++V+ +E+ + +A + + + A Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 1000 IPLL-----RSNFFGPMATALMGGITSATVLTLFFLPALYAAWFRVKPDERDPEP 1049 IP+ + + ++ + + ++ L PAL A + E Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK 508
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 0.005 Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 287 QRWLELFRHYAGDDPATQLKFREALANEPELMTGTWADDALLGFVREAMQHLAPARR 343 Q ++ + + P TQ + R +A +T DD +L + ++M H AR Sbjct: 95 QNGIKRVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDARS 151
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.4 bits (63), Expect = 0.029 Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 2/123 (1%) Query: 82 VSAPPSASTAVSTARSRLPSPLLLSAPASAPMTARARPSARRGPAPRASMGSVHVAARER 141 + AP + A + L P + P P P P V + + Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPV--VEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 142 EPSSRRAPGIPAVSEPMREPRSDAQASAEAGDAQRRLPRAPGVAADWRADLDSLGAARPL 201 + + +P AS A R + AA + R L Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Query: 202 RQA 204 + Sbjct: 161 SRN 163
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 335 bits (861), Expect = e-113 Identities = 127/357 (35%), Positives = 181/357 (50%), Gaps = 42/357 (11%) Query: 127 ERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALH 186 + + G LVG S A L R+ + L +++ GESGTGKEL ARALH Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 187 EASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTGASARKPGLVETAQGGTLFLDEIG 246 + R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+GGTLFLDEIG Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 247 DVPLSMQVKLLRLIESGTFRRVGGVEALCADFRLVAATHKPLKAMIGDGRFRPDLYYRIS 306 D+P+ Q +LLR+++ G + VGG + +D R+VAAT+K LK I G FR DLYYR++ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 307 AYPISLPAVRERPGDMPLLVDSILRRIAALGPVAGQHFVVAPDALARLEAYAWPGNIREL 366 P+ LP +R+R D+P LV +++ G +AL ++A+ WPGN+REL Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG---LDVKRFDQEALELMKAHPWPGNVREL 358 Query: 367 RNVLDRACLLTDDGVIRVEHLPDEVAGGARIEPGAPA----------------------- 403 N++ R L VI E + +E+ P A Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 404 -------------KLSDDELARIARA---FGGTRRALAERVGMSERTLYRRLRALGI 444 L++ E I A G + A+ +G++ TL +++R LG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.011 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 17/79 (21%) Query: 104 LLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATI 163 LL +L +I+ P L + + +I L L ++Q+E A + Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILS-----------------FLGKVQMEVTCALL 403 Query: 164 DAERPDVAVIDSIQTIYSE 182 + I IY E Sbjct: 404 QEKYHVEIEIKEPTVIYME 422
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 438 bits (1127), Expect = e-156 Identities = 207/353 (58%), Positives = 270/353 (76%) Query: 1 MPRPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLRGTDGFGLLD 60 M RPI A++ AL NLS+VR+ A ++VW++VKANAYGHG+ R++ + TDGF LL+ Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 L+EA+ LRE GW GPIL+LEGFF + D+++ D++ LTT VH++ Q++ L+ ARL P+++ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI 120 Query: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERGVAEQMATFERGA 180 LK+NSGMNRLG+ P++ W++ RA +G++TLM+HF++A+ G++ MA E+ A Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA 180 Query: 181 QGIAGARSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLASELI 240 +G+ RS +NSAA LWHP AHFDWVRPGI+LYGASPSG+ DIA+ GL+P MTL+SE+I Sbjct: 181 EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII 240 Query: 241 AVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIAPEGTPVVVDGVRTRIVGRVS 300 VQTL G+ VGYG + A D RIG+VA GYADGYPR AP GTPV+VDGVRT VG VS Sbjct: 241 GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS 300 Query: 301 MDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCAVAPRVPV 353 MDML VDLTP PQAG+G VELWG+ + IDDVAA TVGYELMCA+A RVPV Sbjct: 301 MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPV 353
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 37.1 bits (86), Expect = 8e-06 Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 5/63 (7%) Query: 7 RPRHARYRAVTSFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGFGVQYAASRA 66 R RY + G + G + GF + G GF VQY + Sbjct: 143 RLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNG-----GFFVQYGGAYK 197 Query: 67 TRA 69 Sbjct: 198 RHH 200
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.7 bits (108), Expect = 8e-08 Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 405 VAPVAQRSGVGLALLREAVRIARAERLDGVLLEVRPSNPRAIRLYERFGFVSVGRRRNYY 464 VA ++ GVG ALL +A+ A+ G++LE + N A Y + F+ Y Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLY 156 Query: 465 PAKHRSREDAI 475 + E AI Sbjct: 157 SNFPTANEIAI 167
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.7 bits (66), Expect = 0.043 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 5/128 (3%) Query: 426 QLDRLADLLADREERIERGHRLLEDHRDVRAAQRAHLALALVGERLAREADRAAHVGVAQ 485 + L E +R L E+ + V AQ+ L+ A + + ++ Sbjct: 163 EKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKK-LSAAQSEVVKMDGEIKTLNSRLSS 221 Query: 486 QAQDRQRGDALAGARFADERDALAAADRKRYVVDGERAAEAHAQPLDRQQRLMRRRRRRR 545 R A +R+ LA A K +D + Q R RRR Sbjct: 222 SIHARDA----EMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRR 277 Query: 546 RRAGAARD 553 AG R+ Sbjct: 278 VGAGKIRE 285
>PF06776#Invasion associated locus B Length = 214 Score = 30.7 bits (69), Expect = 0.016 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 52 RAAPSEQAARAAAPRRAARARAALARFARRAAAGVALAFVAAPAAHAVYAIAQYG 106 + P+E + A+ RR AR A A A ++ + + A + +G Sbjct: 28 QMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGW-SDRADAQGAVRSVHG 81
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 59.3 bits (143), Expect = 2e-12 Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 24/261 (9%) Query: 4 LDGKRILLTGLLSNRSIAYGIAKACKREGAEL-AFTYVGDRFKDRITEFAAEFGSELVFP 62 ++GK +TG + + I +A+ +GA + A Y ++ + ++ AE FP Sbjct: 6 IEGKIAFITG--AAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 CDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAY 122 DV D A ID + A ++ +D LV+ G I L+ E + +++ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLI-----HSLSDEEWEATFSVNST 118 Query: 123 SFPALAKAALPMLSD--DASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYLAVSLGAK 180 +++ + D S++T+ A + +KAA + L + L Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 181 GVRVNAISAGPIKTL-----------AASGIKSFGKILDFVESNSPLKRNVTIEQVGNAG 229 +R N +S G +T A IK + ++ PLK+ + +A Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF---KTGIPLKKLAKPSDIADAV 235 Query: 230 AFLLSDLASGVTAEVMHVDSG 250 FL+S A +T + VD G Sbjct: 236 LFLVSGQAGHITMHNLCVDGG 256
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 27.3 bits (60), Expect = 0.016 Identities = 12/38 (31%), Positives = 14/38 (36%) Query: 34 VPAPVYVAPAPVYAPPPPPVVYQPAPVYVPAPVYGPAP 71 V P P P P P + APV + P P P Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 98 Score = 25.7 bits (56), Expect = 0.044 Identities = 10/37 (27%), Positives = 10/37 (27%) Query: 35 PAPVYVAPAPVYAPPPPPVVYQPAPVYVPAPVYGPAP 71 P V P P P P APV P Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 92
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 13/271 (4%) Query: 74 AFTLPIALFALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFV 133 + L A + G +D + RR V+L+S +V ++A A + L + V Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVS-LAGAAVDYAIMATAPFLWV----LYIGRIV 105 Query: 134 GGCAGAMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVASVSPNAAF 193 G GA + + + E + S F AGP LGG + SP+A F Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPF 163 Query: 194 V---LSGLSYAGLIYALSRSIRGAAARPPVRERLATMLVQGVRYCGRARGIRGTLIRSSL 250 L RP R A + R+ + + + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRP--LRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 251 FGFLGSPVWALLPLFAKTQFGGEARTYGVLLASFGA-GAASGALGGAAGRARLGREALVR 309 +G AL +F + +F +A T G+ LA+FG + + A+ ARLG + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 310 LCTLTFAAGMLATAWSPCQAVAMLGLAVAGG 340 L + G + A++ +A + + Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Score = 35.2 bits (81), Expect = 5e-04 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 21 LAALRGPFAYRTFAAIWVAS-LVGNIGGSIQTVAASWLMTSMAPSPTMVSLVQTAFTLPI 79 LA+ R AA+ ++ +G + + T + + AF + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 80 ALF-ALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFVGGCAG 138 +L A+++G A R ++L M + + LA A A ++ + G Sbjct: 260 SLAQAMITGPVAARLGERRALMLG---MIADGTGYILLAFATRGWMAFPIMVLLASG--- 313 Query: 139 AMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVA 185 + PA Q+ ++ QV + + GP L I A Sbjct: 314 GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 21/126 (16%) Query: 87 TVRSQVDGQITHVRFREGQQVRAGDVLVEIDRRALQAAADQATAKLEQDKATLANARLEL 146 ++ + + + +EG+ VR GDVL+++ +A + + L Q + ++ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 147 ----------------ARHQRLAEMNAAPVQML-----DTWKARVNELHAQIRGDQAAVQ 185 Q ++E + L TW+ + + + +A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 186 NARVAV 191 + Sbjct: 218 TVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 758 bits (1958), Expect = 0.0 Identities = 273/1033 (26%), Positives = 496/1033 (48%), Gaps = 26/1033 (2%) Query: 9 FIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLPGADPVSVASTLAQP 68 FIR P+ ++ ++ AG A LPVA P + P + VSA PGAD +V T+ Q Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 69 LETQFSKIPYVTQMTSQSTLS-STSIVLQFSLERSIDAAANDVQSAIDAAAAQLPADLPS 127 +E + I + M+S S + S +I L F D A VQ+ + A LP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 128 PPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLSQIDGVGSVSIGGQQKP 185 + S +M+ +S T D DYV + + +LS+++GVG V + G Q Sbjct: 125 QGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 186 SIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVFNGT------TRSYTIYTNGQLTE 239 ++RI LD L L+ DV L + G GT + +I + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 240 PAQWNDAIV-AYRDGTPVRIRDIGQAVLGPEDNTLAAWIDGRRAISVGIYKKPGANTVST 298 P ++ + DG+ VR++D+ + LG E+ + A I+G+ A +GI GAN + T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 299 VDKIRARLPELEASLPPSLKIAVLADRTQTIRASLLDIELTLLLNVVLVVVVIYAFLGSV 358 I+A+L EL+ P +K+ D T ++ S+ ++ TL ++LV +V+Y FL ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 359 RTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENIARH-VE 417 R T+IP + VPV L G A++ GYS++ +++ M +A+G +VDDAIV+VEN+ R +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 418 AGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVTLSMTIIVSA 477 P +A K +S+ + I++ L AV +P+ G G ++R+F++T+ + +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 478 FVSLTLTPMMASYLLRAHRHDAGRPPRP--GLFERAFARTAAAYERALDVALRHRFVTLC 535 V+L LTP + + LL+ + G F F + Y ++ L L Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 536 AFFASVAASVFLYVGIPKGFFPQQDTGVITGISEAAQTISVEDMARHSMALAAIIRADPA 595 + VA V L++ +P F P++D GV + + + E + + + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 596 --VEHCQMAVGGSAYAGTTVNNGRWYITLKPRDQRDA---TADEVIRRLRPQFAKVPGVR 650 VE V G +++G N G +++LKP ++R+ +A+ VI R + + K+ Sbjct: 603 ANVES-VFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 651 MYLQAAQDVIIGARLARTQYQLTLQSA-DVGALTTWAPRLLARLSGLP-QLRDVASDQQV 708 + ++ ++L Q+ ALT +LL + P L V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 709 NGSALSVAIDRDQAARYGLTPEAIDGTLYDAFGSRQVAQYFTQLSTYKVIMETLPSLQRD 768 + + + +D+++A G++ I+ T+ A G V + + K+ ++ + Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 769 PGTLDRIYMKAPSGALVPLSSVARWTTDTVQPLSVNHQSHFPSVTISFNLAPGVSLGEAT 828 P +D++Y+++ +G +VP S+ + + + PS+ I APG S G+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 829 AAIEAARASLRMPPAVVGSFQGTAQAFQSTLATMPMLILSALIVAYLVLGALYGSFIHPW 888 A +E + ++P + + G + + + P L+ + +V +L L ALY S+ P Sbjct: 841 ALME--NLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 889 TILSTLPSAGVGAIATLWLFKYDFNLIALIGVILLIGIVKKNGIMMVDFAIAATRERNMT 948 +++ +P VG + LF ++ ++G++ IG+ KN I++V+FA + Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 949 SLDAIRSACLLRLRPIMMTTMTALFGALPLMLTPGMGSELRQPLGYAMVGGLLVSQVLTL 1008 ++A A +RLRPI+MT++ + G LPL ++ G GS + +G ++GG++ + +L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1009 FTTPVIYLYLDTL 1021 F PV ++ + Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 90.7 bits (225), Expect = 2e-20 Identities = 78/509 (15%), Positives = 163/509 (32%), Gaps = 37/509 (7%) Query: 4 NLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLP-GADPVSVA 62 N + L+ A I+ V + LP + LP+ + LP GA Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 63 STLAQPLETQF---SKIPYVTQMTSQSTLSSTS-------IVLQFSLERSIDAAANDVQS 112 L Q + + + S + + L+ ER + N ++ Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEER--NGDENSAEA 645 Query: 113 AIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAIS---------STLPLTTIDDYVETR 163 I A + L + I+ L + + L + Sbjct: 646 VIHRAKME----LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 164 LTKSLSQIDGVGSVSIGGQQ-KPSIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVF 222 L + + SV G + ++++D K + G+S D+ + +S G F Sbjct: 702 LGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761 Query: 223 NGTTRSYTIYTNGQ---LTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPEDNTLAAWIDG 279 R +Y P + V +G V + L +G Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNG 820 Query: 280 RRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTIRASLLDIELT 339 ++ + PG ++ A + L + LP + + R S Sbjct: 821 LPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPAL 875 Query: 340 LLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVG 399 + ++ V+V + + A S + + VP+ + G + D ++ + +G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 400 FVVDDAIVMVENI-ARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGII 458 +AI++VE + G+ ++A L + I SL+ + +LPL + +G Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 459 GRMFREFAVTLSMTIIVSAFVSLTLTPMM 487 + + ++ + +++ P+ Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.026 Identities = 34/188 (18%), Positives = 52/188 (27%), Gaps = 22/188 (11%) Query: 335 SDRLSLFADVGYTRNFHG--AAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANG 392 S+ + L Y RN + A N + + Y G L G Sbjct: 1331 SNNVQLGGVFTYVRNSNNFDKATSKNTL----AQVNFYSKYYADNHWYLGIDLGYGKFQS 1386 Query: 393 SLAGGQGR-IGLHAYRLGVY--HAFERAGLFVRAYAGAGWSR-----YRL--DRAAVLPG 442 L H + G+ AF + G +S + L R V P Sbjct: 1387 KLQTNHNAKFARHTAQFGLTAGKAFNLGNFGITPIVGVRYSYLSNADFALDQARIKVNPI 1446 Query: 443 AVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQLVARGYTEDGDPILAQNVGVQR 502 +V+ + + D Y + LG + P+ Y G A NV Q+ Sbjct: 1447 SVKTAFAQVDLS------YTYHLGEFSVTPILSARYDANQGSGKINVNGYDFAYNVENQQ 1500 Query: 503 LKGVSAGA 510 Sbjct: 1501 QYNAGLKL 1508
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.0 bits (83), Expect = 2e-04 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 116 IDDERVRRDLDAGKVVIITGFQGV---DPDGHITTL-GRGGSDTSAVAVAAALEADECLI 171 ++ E +++ ++ G +VI +G GV DG I + D + +A + AD +I Sbjct: 174 VEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 Query: 172 YTDVDGVYTTDPRVVEEARRLDSVTFEEMLEMA--------SLGSKVLQ-IRSVEFAGK 221 TDV+G E+ + L V EE+ + S+G KVL IR +E+ G+ Sbjct: 234 LTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 290
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 28.7 bits (63), Expect = 0.026 Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 50 VATAAVAPADAFAATAKTAQSAKGKKSAAKKSLRAASSSAEPRAKGARKR 99 +A+ A APA +A +A G+ +A LRA + + P A G Sbjct: 27 LASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTLTCAPTASGTHPA 76
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 5e-04 Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 49 VPSPSAGTVKEVKVKVGDAVSQGSLIVLLDGAQAAAQPAQANGAATSAAQPAAAPAAA 106 + VKE+ VK G++V +G +++ L A A + + A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Score = 31.0 bits (70), Expect = 0.014 Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 162 VPSPAAGVVKDIKVKVGDAVSEGSLIVVLEASGGAAA 198 + +VK+I VK G++V +G +++ L A G A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.012 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%) Query: 744 PVLIEQVLV-NLMKNAAEAMQEARPQAENGVIRVVADLEAGFVDIRVIDQGPGVDEATAE 802 P ++ Q LV N +K+ + G I + + G V + V + G + T E Sbjct: 256 PPMLVQTLVENGIKHGIA------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309 Query: 803 RLFEPFYSTKSDGMGMGLNICRSII 827 S G G+ N+ + Sbjct: 310 ----------STGTGL-QNVRERLQ 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (283), Expect = 2e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIAENAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLE 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARNESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.001 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 116 LNRRLPRAVARTREGDFSLNGLLGFDLFGKTVGVIGTGLI--GSVFARIMTGFGMRVLAH 173 L +P A A RE + G+ FD V ++G G++ A + TG G + L Sbjct: 60 LENLIPEAFAVVREASKRVFGMRHFD-----VQLLG-GMVLNERCIAEMRTGEG-KTLTA 112 Query: 174 SLPPHDDALIALGVRYVPLDALLAEAD 200 +LP + +AL GV V ++ LA+ D Sbjct: 113 TLPAYLNALTGKGVHVVTVNDYLAQRD 139
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 1e-06 Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 34/264 (12%) Query: 194 DADRRERRDERRYPPPVGELAADGAADRQPEAEQQQHERDVVRREARHVLEDRRDVREHG 253 + + R DE PPP A + + AE + E V + + E RE Sbjct: 1013 NNEEIARVDEAPVPPP---APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVA 1069 Query: 254 EEARRREHADAEHHQHLRVAQHAELARDAGRGHLEALRHAEGERRRGERADAGDGPERRA 313 +EA+ A+ Q VAQ ++ E A E+ + + E+ Sbjct: 1070 KEAKSNVKANT---QTNEVAQSGSETKETQT--TETKETATVEKEEKAKVET----EKTQ 1120 Query: 314 PAERLAERGAERHAEHVREREAGEHQRDRLRALVRRDEVARDHRADAEERAVAERGDDAR 373 ++ + + + + + E R+ + ++ ++ A+ A+ Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE-------PQSQTNTTADTEQPAK 1173 Query: 374 DHQRRVAGRDRAKQITDDEHADQREQRRLARHFRGDDGEDRRADRHAERIAGHEHARRRN 433 + V + + + + + R+ Sbjct: 1174 ETSSNV----------EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 434 RHAQIARDIRQEPHDDELGGTDAK 457 R R +R PH+ E T + Sbjct: 1224 R-----RSVRSVPHNVEPATTSSN 1242
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 5e-09 Identities = 95/399 (23%), Positives = 149/399 (37%), Gaps = 37/399 (9%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPNVARDLGVSIPAA---GMLVSGYALGVTIGAPILAVV 61 L +A+ A GIG +IM +LP + RDL S G+L++ YAL AP+L + Sbjct: 11 LSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 62 TAKMPRKAALLALIGVFIVGNLFCAIAPGYATLMVARVVTAFCHGAFFGIGSVVASNLVA 121 + + R+ LL + V A AP L + R+V G+ +A ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITD 125 Query: 122 PNKRAQAIALMFTGLTLANVLGVPLGTALGQAFGWRATFWAVTGIGALAAAALAFCVPKR 181 ++RA+ M V G LG +G F A F+A + L F +P+ Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 182 LEMPAAGIAREFGVLRNPQVLMVLGISVLASASLFTVFTYIAPI-----------LEDVT 230 + + RE NP + A+L VF + + ED Sbjct: 185 HKGERRPLRRE---ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 231 GFTPHDVTLVLLLFG-LGLTVGGTVGGKLADW---RRIPSLVATLASIGVVLAAFAGTMR 286 + + + L FG L + G +A RR L G +L AFA Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 287 TPLPALVTIFVWGVLAFAIVPPLQILIVDRAS-HAPNLASTLNQGAFNLGNALGAWLGGT 345 P +V + G+ +P LQ ++ + +L + +G L Sbjct: 302 MAFPIMVLLASGGI----GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 346 AIHAGVPLAK-LPW-AGAAL---AMAALALTLWSASLER 379 A + W AGAAL + AL LWS + +R Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 9e-08 Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 25/395 (6%) Query: 12 LILSVAVVGLGTGATLPLTALALTEAGHGTRIV---GILTAAQAGGGLAVVPFVTAITKR 68 ++ +VA+ +G G +P+ L + H + GIL A A A P + A++ R Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 69 LGARQVIVASVVVLAAATALMQFTSNLVVWGVLRVVCGAALMLLFTIGEAWVNQLADDAT 128 G R V++ S+ A A+M L V + R+V G G A++ + D Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDGDE 128 Query: 129 RGRVVAIYATNFTLFQMAGPVLVSQIAGMTH-----VRFALSGTLFLLAL----PSLASI 179 R R + F +AGPVL + G + AL+G FL S Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 180 RKTPIADEPHHDAHDRWTRVIPKMPALVVGTAFFALFDTLALSLLPIFAMAR--GVASEA 237 R+ + + A RW R + + AL+ L + +L IF R A+ Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 238 AVLFAAILLFGDTAMQFPIGWLADKLGRERVHLGAGCVVLALLPLLPAVVTTPWLCWPLL 297 + AA + A G +A +LG ER L G + +L A T W+ +P++ Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLG-ERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 298 FVLGAAAGSVYTL----SLVACGERFRGSALVTASSLVSASWSAASFGGPLVAGALMEQF 353 +L + + L S ER +G + ++L S S GPL+ A+ Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEER-QGQLQGSLAALT----SLTSIVGPLLFTAIYAAS 362 Query: 354 GGDALIGVLIVSAIAFVGAALWERRALPMQAARRG 388 I A ++ RR L A +R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRA 397
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 8e-07 Identities = 77/398 (19%), Positives = 124/398 (31%), Gaps = 59/398 (14%) Query: 50 VAPSVIAEWGVKKQA---LGPVFSASLFGMLLGALGLSVLADRIGRRPVLIGATLFFALA 106 V P ++ + G + + A L L+DR GRRPVL+ + A+ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 107 MLATPFATSIPILIALRFVTGLGLGCIMPNAMALVGECSPSAHRVKRM----MIVSCGFT 162 A + +L R V G+ G A A + + + R + G Sbjct: 87 YAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 163 LGAALGGFVSAALIPAFGWRAVFFVGGAVPLALAAAMAASLPESPQLLVLRGRHDAARAW 222 G LGG + F A FF A+ LPES H R Sbjct: 146 AGPVLGGLMGG-----FSPHAPFFAAAALNGLNFLTGCFLLPES---------HKGERRP 191 Query: 223 LAKFAPRLAVPPDTRLVVREAGPRGAPVAELFRSGRARVTLLLWAINF-MNLIDLYFLSN 281 L + A P+A + V L A+ F M L+ + Sbjct: 192 LRREALN-------------------PLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 282 WLPTVMRDAGYASGTAVIVGTVLQTGGVIGTLS----LGWFIERHGFARVLFACFACATI 337 W+ + A +G L G++ +L+ G R G R L Sbjct: 233 WVIFGEDRFHW---DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 338 AIGLIGSVAHAFVWLLAAVFVGGFCVVGGQPAVNALAGHYYPTSLRSTGIGWSLGVGRVG 397 L+ ++ V + + G PA+ A+ + G + + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 398 SVLGPLVGGQLIA--------LGWSNDALFHAAAVPVL 427 S++GPL+ + A W A + +P L Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.011 Identities = 15/74 (20%), Positives = 24/74 (32%) Query: 2 AGSAANTPRASSPPAGKPPRNPGQIGGSRQIASPPKSIVRGSPHRRCARRAPRRRPATHS 61 S NT + PA + N Q + S+V + A P + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 62 IPTPASLRRLRASP 75 P R +R+ P Sbjct: 1218 KPKNRHRRSVRSVP 1231
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 36.0 bits (83), Expect = 3e-05 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 3 RRADRLFQIAELLRGRRLTTAQQLADWL-----SVSPRTVYRDVRDLQLSGVPIEGEAGI 57 + R +I E++ + T +L D L +V+ TV RD+++L L VP + Sbjct: 2 NKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSYK 61 Query: 58 GYRLNRAASLPPLTF 72 Y L PL+ Sbjct: 62 -YSLPADQRFNPLSK 75
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 8e-04 Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 45/244 (18%) Query: 156 GNLFGMVGMAIAILTTVALIAKQAAWLGANLPLGLALVFGALVIGGAVGAVIAARVEMTK 215 G + G IA +T A+ ++ A G+ V+GG +G Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA---GPVLGGLMGGFSPH------ 160 Query: 216 MPELVAAMHSLIGLAAVCIAIAVVAEPEAFGL---VPQDASAPNFIPYGNRIELFIGTFV 272 P AA + + C + + E L ++ + + + F Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 273 GAITFSGSVIAFGKLSGKYRFR------------------LFQ----GAPVVYPGQ-HLI 309 A + G+ RF L Q G G+ + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 310 NLMLALAMLGFGILFFITQSWLPFGIMTAIAFALGVLIIIPIGGADMPVVVSMLNSYSGW 369 L + G+ +L F T+ W+ F IM +A GG MP + +ML+ Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLAS----------GGIGMPALQAMLSRQVDE 330 Query: 370 AAAG 373 G Sbjct: 331 ERQG 334
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.018 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 139 KAVLVAAALYPRFFPMLMTAAGTVKAARVLVL--GAGVAGLQAIATA 183 +A L+A + R P+LMT+ + L + GAG A+ Sbjct: 961 EATLMAVRM--RLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.8 bits (181), Expect = 1e-17 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 6/243 (2%) Query: 7 LFYKEILRFWKVSFQTVLAPVVTALLYLTIFGHALTGRVNVYPGVEYVSFLVPGLVMMSV 66 ++ + + + K + ++L + L+YL G L V GV Y +FL G+V S Sbjct: 19 VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSA 78 Query: 67 LQNA-FANSSSSLIQSKITGNLVFMLLPPLSSADIFGAYVLASVVRGLAVGAGVFVVTVW 125 + A F ++ + + ML L DI + + + GAG+ VV Sbjct: 79 MTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAA 138 Query: 126 FIPMSFAAPLYIVAFALFGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLSGVFYS 185 + + LY + +LG++ A +D +Q +I P+ FLSG + Sbjct: 139 LGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFP 198 Query: 186 THSLPPVWREVSRLNPFFYMIDGFRYGFFG--IADVNPLASLS---VVAGFFVLLALIAM 240 LP V++ +R P + ID R G + DV +V FF+ AL+ Sbjct: 199 VDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258 Query: 241 RLL 243 RLL Sbjct: 259 RLL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.037 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 34 LLGPNGAGKTTLISILAGL 52 L G G GK+TLI+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGL 619
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.026 Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 74 RTTQLAMGRNWRTATPAQQQQVIEQFKQLLIRTYSGALAQLKPDQQIQYPPFRADADATD 133 R + A ++ +Q +T + L+ L P + T+ Sbjct: 107 NLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTN 166 Query: 134 VVVRTVAMNNGQP 146 V R M+ P Sbjct: 167 VARRIALMDRTSP 179
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 223 bits (569), Expect = 3e-74 Identities = 85/220 (38%), Positives = 114/220 (51%), Gaps = 8/220 (3%) Query: 15 AAAALSGCATVQTPTKG--DPFEGFNRTMYTFNDKV-DQYALKPVARGYQWAVPQPMRDS 71 L GCA+ T +G DP EGFNRTMY FN V D Y ++PVA ++ VPQP R+ Sbjct: 11 GTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNG 70 Query: 72 VTNFFSNIGDVYIAANNLVQLKIADGVGDIMRVVINTVFGVGGLFDVATLAKLPKHAND- 130 ++NF N+ + + N +Q G+ R +NT+ G+GG DVA +A + Sbjct: 71 LSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEP 130 Query: 131 --FGVTLGHYGVPSGPYLVLPLLGPSTVRDTAGLAVDYAGNPLTYVRPDGVSWGLFGLNL 188 FG TLGHYGV GPY+ LP G T+RD G D A P+ +S G + L Sbjct: 131 HRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMAD-ALYPVLSWLTWPMSVGKWTLEG 189 Query: 189 VNTRANLLGAGDVLEAAAIDKYSFVRNAYLQRRQALIGGA 228 + TRA LL + +L + D Y VR AY QR + G Sbjct: 190 IETRAQLLDSDGLLR-QSSDPYIMVREAYFQRHDFIANGG 228