>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 33.6 bits (77), Expect = 0.001

		 Identities = 69/332 (20%), Positives = 120/332 (36%), Gaps = 49/332 (14%)

		

		Query: 68  FFGVIGDRFGRKVALTSALFCMSVPTVLIGILPTYHTIGITATILMICVRILQGLS-MGG 126

		             G + DRFGR+  L  +L   +V   ++   P          +L I  RI+ G++   G

		Sbjct: 62  VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-------WVLYIG-RIVAGITGATG 113

		

		Query: 127 ALTGSISFVI--EHTSHKHQGFTGSISMSSICSGLLLGSFVSYIVKNILTASQFDSFGWR 184

		           A+ G+    I       +H GF  +     + +G +LG  +               F   

		Sbjct: 114 AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG-------------GFSPH 160

		

		Query: 185 IPFLLGFFILFAAFYIKKNTHETPNFKNLREQKKILQSPLKKVITNYW--FDILISIFIN 242

		            PF     +    F              L E  K  + PL++   N    F     + + 

		Sbjct: 161 APFFAAAALNGLNFLT--------GCFLLPESHKGERRPLRREALNPLASFRWARGMTVV 212

		

		Query: 243 APGSIIFYLTTIYLVSFLKISRNFTENEVNSLASVSYVIMIAV-----TLLSGYLSDIIG 297

		           A    +F++  +       +   F E+  +   + +  I +A      +L    ++  + 

		Sbjct: 213 AALMAVFFIMQLVGQVPAALWVIFGEDRFH-WDATTIGISLAAFGILHSLAQAMITGPVA 271

		

		Query: 298 RR--KIFVINLIIIIVTTSFLLNNFENGAFTSVIISQLILAILAASYIGPEPALQAEL-- 353

		            R  +   + L +I   T ++L  F     T   ++  I+ +LA+  IG  PALQA L  

		Sbjct: 272 ARLGERRALMLGMIADGTGYILLAF----ATRGWMAFPIMVLLASGGIG-MPALQAMLSR 326

		

		Query: 354 YPTNIRNTALSISYNTATSIFGGTTPLVFEYL 385

		                R   L  S    TS+     PL+F  +

		Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358

		

		

		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score = 56.1 bits (135), Expect = 6e-14

		 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

		

		Query: 1   MIDILLFVHITIAILLIIVILMQR-SGSDGISSISGGNNMGVVSAKTVGNFLTKSTIILT 59

		           M + LL V + +AI L+ +I++Q+  G+D  +S   G +  +  +   GNF+T+ T +L 

		Sbjct: 1   MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60

		

		Query: 60  TLFLINAIVLANLSSKKKSDLVSKINEIEENQAENSLPIA 99

		           TLF I ++VL N++S K +      N     + E + P A

		Sbjct: 61  TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAA 100

		

		

		>PF08280#M protein trans-acting positive regulator

		          Length = 530

		

		 Score = 28.7 bits (64), Expect = 0.037

		 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

		

		Query: 218 PNTKIYDQIYNIAIDEFLKQNSNKFDIIFSFCGLSFTNNLIEYFNLIYSSLN 269

		           P T+I+ Q+  + + + LK++S   DII ++C L+F+   ++Y  LIY + N

		Sbjct: 250 PQTRIFQQLKKLFVYDSLKKSSR--DIIETYCQLNFSAGDLDYLYLIYITAN 299

		

		

		>VACJLIPOPROT#VacJ lipoprotein signature.

		          Length = 251

		

		 Score =  235 bits (600), Expect = 7e-80

		 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

		

		Query: 57  YDPYEKFNRKVFVFN-SVLDYIILRPLAIGYKNITNDYVKARVNSFVSNVDTLLTAVNYG 115

		            DP E FNR ++ FN +VLD  I+RP+A+ +++      +  +++F  N++     VNY 

		Sbjct: 29  SDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYF 88

		

		Query: 116 LQLNYDKTMKSVWRFLINTTLGIGGLFDVAGKVGLPSNR---QTFGSTLAHYGVAPGPYL 172

		           LQ +  + M    RF +NT LG+GG  DVAG       R     FGSTL HYGV  GPY+

		Sbjct: 89  LQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYV 148

		

		Query: 173 VLPIIGSTNARDMTDLVITNYALNPLMYYTHNDFDLGVLAVSTINDRYVVLPFSDYVMKN 232

		            LP  GS   RD  D      AL P++ +      +G   +  I  R  +L  SD +++ 

		Sbjct: 149 QLPFYGSFTLRD--DGGDMADALYPVLSWLTWPMSVGKWTLEGIETRAQLLD-SDGLLRQ 205

		

		Query: 233 STDPYVAIRSALHRAREASVQ 253

		           S+DPY+ +R A  +  +    

		Sbjct: 206 SSDPYIMVREAYFQRHDFIAN 226

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score =  255 bits (652), Expect = 1e-84

		 Identities = 101/361 (27%), Positives = 166/361 (45%), Gaps = 21/361 (5%)

		

		Query: 27  TVEINLSTIKNNYLLLQDICKTSLVGAAVKANGYGLGAVQISKALIEENCRHFFVASSEE 86

		              ++L  +K N  +++     + V + VKAN YG G  +I  A+   +   F + + EE

		Sbjct: 6   QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLEE 63

		

		Query: 87  GVNLRNALGLDVNILVLNGVFEHDALELI-EYNLTPVLNNLKQIEIWQKFSNLKNRLLPC 145

		            + LR   G    IL+L G F    LE+  ++ LT  +++  Q++  Q  + LK  L   

		Sbjct: 64  AITLRER-GWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQN-ARLKAPL-DI 120

		

		Query: 146 YLHFNTGINRLGLSSDEIEQLINDRDLLKGLDLQYIISHLAISEEIDNPYNLEQLNRFKA 205

		           YL  N+G+NRLG   D +  +      +  +    ++SH A +E  D       + R + 

		Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARIEQ 178

		

		Query: 206 YLQYFPNVKASLANSGGIFLGQDYHFDLARSGAALYGLNPLTKN---------PV-TLKA 255

		             +     + SL+NS       + HFD  R G  LYG +P  +          PV TL +

		Sbjct: 179 AAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSS 237

		

		Query: 256 PIIHLQNLTLDSHIGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQGEVFINSRGVPIVG 315

		            II +Q L     +GY   +T + +  I  +  GYADG+ R+      V ++      VG

		Sbjct: 238 EIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVG 297

		

		Query: 316 RVSMDLINIDVTDLPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSRYKRKY 375

		            VSMD++ +D+T  P  +  +G   E+ G     D +A+  GT+GYE++  L  R     

		Sbjct: 298 TVSMDMLAVDLTPCP--QAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVT 355

		

		Query: 376 I 376

		           +

		Sbjct: 356 V 356

		

		

		>PF06438#Heme acquisition protein HasAp

		          Length = 205

		

		 Score = 31.1 bits (70), Expect = 0.006

		 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

		

		Query: 71  DAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSSRPTSAKVRGSDLKYNLTIN 130

		           D          G N GGF+P      G  ++       +S+   +A + G DL Y L  N

		Sbjct: 29  DVNHRPGQVVDGSNTGGFNP--GPFDGSQYA------LKSTASDAAFIAGGDLHYTLFSN 80

		

		Query: 131 LEEAFHGIEKNISF 144

		                 G   +I+ 

		Sbjct: 81  PSHTLWGKLDSIAL 94

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  150 bits (381), Expect = 2e-42

		 Identities = 86/389 (22%), Positives = 148/389 (38%), Gaps = 72/389 (18%)

		

		Query: 34  KKTRNLMGKVIGIDLGTTNSCVAVMEG----KEPKVIE-NAEGERTTPSIIAFANGEKLV 88

		           KK R +    + IDLGT N+ + V        EP V+    +   +  S+ A       V

		Sbjct: 3   KKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA-------V 55

		

		Query: 89  GQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWVEADNNKY 148

		           G  AK+     P N I A++         PM  KD  I  +                  +

		Sbjct: 56  GHDAKQMLGRTPGN-IAAIR---------PM--KDGVIADF------------------F 85

		

		Query: 149 SPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIIN 208

		              ++    ++++   +         + ++ VP      +R+A +++ + AG   + +I 

		Sbjct: 86  VTEKMLQHFIKQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIE 142

		

		Query: 209 EPTAAALAYGFEKSASKTIAVYDLGGGTFDVSILEIADGVFEVKSTNGDTFLGGEDFDTR 268

		           EP AAA+  G   S +    V D+GGGT +V+++ +   V      +    +GG+ FD  

		Sbjct: 143 EPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEA 197

		

		Query: 269 ILNHLIDVFKKENGIDLSKDPLALQRLKEAAEKAKKELSSAVTTD----INLPYITADSS 324

		           I+N++   +    G             +  AE+ K E+ SA   D    I +        

		Sbjct: 198 IINYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEG 244

		

		Query: 325 GPKHLNIKFTRAELEKLVDDLIEKTIEPCRKALQD-AGFKASDIQE--VVLVGGMTRMPK 381

		            P+   +  +   LE L + L    +     AL+      ASDI E  +VL GG   +  

		Sbjct: 245 VPRGFTLN-SNEILEALQEPLTG-IVSAVMVALEQCPPELASDISERGMVLTGGGALLRN 302

		

		Query: 382 VQEAVKKIFGREPHKGVNPDEVVALGAAI 410

		           +   + +  G       +P   VA G   

		Sbjct: 303 LDRLLMEETGIPVVVAEDPLTCVARGGGK 331

		

		

		>V8PROTEASE#V8 serine protease family signature.

		          Length = 336

		

		 Score = 52.7 bits (126), Expect = 1e-09

		 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 32/196 (16%)

		

		Query: 56  AVSAYDDTSSWTGTGFINDKNNGYIITNTHVVGGASIGTYFVTFY----------NGEQA 105

		            +     T ++  +G +  K+   ++TN HVV       + +  +          NG   

		Sbjct: 92  YIQVEAPTGTFIASGVVVGKDT--LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFT 149

		

		Query: 106 EAKLIYYDIWQDYAVLKVE----SKDIPASATQISFA-SELPKLNQKVFVVGNTEAQGFS 160

		             ++  Y    D A++K      +K I       + + +   ++NQ + V G    +   

		Sbjct: 150 AEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK--- 206

		

		Query: 161 FHTGYLSDLYNIAGLMPQC-TYVINL--NTTGGASGSPVLNDKIEAIGVLYGGGKTHSLA 217

		                ++ ++   G +       +    +TTGG SGSPV N+K E IG+ +GG   +   

		Sbjct: 207 ----PVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP-NEF- 260

		

		Query: 218 LHGDYVVRTLESLKNN 233

		              +  V   E+++N 

		Sbjct: 261 ---NGAVFINENVRNF 273

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score = 85.6 bits (212), Expect = 3e-20

		 Identities = 63/359 (17%), Positives = 122/359 (33%), Gaps = 58/359 (16%)

		

		Query: 23  VGIDFGTTNSLIAIAANRKVKVIKSIDDKELIPTTIDFTSNNFTIGKNKGLRSIKRLFGK 82

		           + ID GT N+LI +     V    S+              +   +G +      K++ G+

		Sbjct: 13  LSIDLGTANTLIYVKGQGIVLNEPSVVAIR--QDRAGSPKSVAAVGHDA-----KQMLGR 65

		

		Query: 83  TLKEILNT-PALFSLVKDYLDVNSSELKLNFANKQLRVPEIAAEVFIYLKNQAEEQ-LKT 140

		           T   I    P    ++ D+                     +  ++  +   Q        

		Sbjct: 66  TPGNIAAIRPMKDGVIADF--------------------FVTEKMLQHFIKQVHSNSFMR 105

		

		Query: 141 NLTKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYD 200

		              + ++ VP       R  +  +A+ AG   + LI EP AAA   GL  ++    +V D

		Sbjct: 106 PSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVD 165

		

		Query: 201 LGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKK 260

		           +GGGT +V++++        +  +    +GG+  D  I  Y+   +    S+     A++

		Sbjct: 166 IGGGTTEVAVIS-----LNGVVYSSSVRIGGDRFDEAIINYVRRNY---GSLIGEATAER 217

		

		Query: 261 AKETL-TYKDSFNNDNISINKQTLEQLILPLVERTINIAQECLEQAGNPNID-------- 311

		            K  + +         I +  + L + +        N   E L++     +         

		Sbjct: 218 IKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277

		

		Query: 312 ------------GVILVGGATRIPLIKDELYKAFKIDILSDIDPDKAVVWGAALQAENL 358

		                       G++L GG   +  +   L +   I ++   DP   V  G     E +

		Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMI 336

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score = 48.6 bits (116), Expect = 2e-08

		 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 35/190 (18%)

		

		Query: 188 ASAISCLTNDEKNLGSLIIDMGDKTTSFGIFFAGKLIYTGHVNIGSFHISSDI----AKV 243

		           A+AI       +  GS+++D+G  TT   +     ++Y+  V IG       I     + 

		Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205

		

		Query: 244 FG--IDLVTAEKLKILYGNAMIPLFEKDSIINMEDFQVDTHHTLNTSVTIYKLAEVIRAR 301

		           +G  I   TAE++K   G+A    +  D +  +E    +    +    T+    E++ A 

		Sbjct: 206 YGSLIGEATAERIKHEIGSA----YPGDEVREIEVRGRNLAEGVPRGFTL-NSNEILEAL 260

		

		Query: 302 AEEILSMVKA------------EYDKATKGQVEVFRVVITGGGSQLRGLKELSNKIFEKQ 349

		            E +  +V A              D + +G      +V+TGGG+ LR L  L  +     

		Sbjct: 261 QEPLTGIVSAVMVALEQCPPELASDISERG------MVLTGGGALLRNLDRLLMEE---- 310

		

		Query: 350 SRIGKPEIIA 359

		              G P ++A

		Sbjct: 311 --TGIPVVVA 318

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 27.3 bits (60), Expect = 0.032

		 Identities = 9/14 (64%), Positives = 12/14 (85%)

		

		Query: 155 ISKPQDIADVILFL 168

		           ++KP DIAD +LFL

		Sbjct: 225 LAKPSDIADAVLFL 238

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score =  191 bits (487), Expect = 4e-55

		 Identities = 105/457 (22%), Positives = 188/457 (41%), Gaps = 68/457 (14%)

		

		Query: 4   IRNIAIIAHVDHGKTTLVDNMLKQSGTFRANQAVAE--RAMDSNDLERERGITILAKCTA 61

		           I NI ++AHVD GKTTL +++L  SG      +V +     D+  LER+RGITI    T+

		Sbjct: 3   IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62

		

		Query: 62  LMWNDIRINIVDTPGHADFGGEVERILSMVDGVVLLVDASEGPMPQTKFVLSKALNLGLK 121

		             W + ++NI+DTPGH DF  EV R LS++DG +LL+ A +G   QT+ +      +G+ 

		Sbjct: 63  FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122

		

		Query: 122 PIVVINKIDRDDQRIKEVINEVFELFVA----------------------------LEAN 153

		            I  INKID++   +  V  ++ E   A                            +E N

		Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182

		

		Query: 154 NDQL-----DFPIVYASGRAGRASLTFDDKINP------LDNLADDLAPLFDLIVQHVPK 202

		           +D L        +         +    +  + P       +N+   +  L ++I      

		Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG--IDNLIEVITNKFYS 240

		

		Query: 203 PLADDKAPFSMLVTTREYNSFFGRVLTGRVQSGTVKINQNVKVLNRENKVLETGRITKIL 262

		                ++     V   EY+    R+   R+ SG + +  +V++  +E       +IT++ 

		Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-----KITEMY 295

		

		Query: 263 AFRGLERIAINDATAGDIIAVAGVE---NANVADTICSPEVTEAVPSLPIDPPTLSMTFS 319

		                E   I+ A +G+I+ +       N+ + DT   P         P   P L  T  

		Sbjct: 296 TSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLP--QRERIENP--LPLLQTTVE 351

		

		Query: 320 VNDSPLAGSEGTKVTSSLIGARLMREL-ESNVALKVTEAAEKNAFQVAGRGELQLGILIE 378

		            +       +   +  +L       E+ +S+  L+    +  +   ++  G++Q+ +   

		Sbjct: 352 PSKP----QQREMLLDAL------LEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCA 401

		

		Query: 379 TMRRE-GFELSISRPEVLFQTDEKGNKQEPMEEIQVD 414

		            ++ +   E+ I  P V++       K E    I+V 

		Sbjct: 402 LLQEKYHVEIEIKEPTVIYMERPLK-KAEYTIHIEVP 437

		

		

		

		 Score = 29.4 bits (66), Expect = 0.049

		 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

		

		Query: 406 EPMEEIQVDVDDDYVGVVVKSLALRKAEMTDMRPSGGGKSRVTFIGPSRGLIGYHSQFLT 465

		           EP    ++    +Y+           A + D +     +  ++   P+R +  Y S    

		Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595

		

		Query: 466 ETRGTGIMNRIFHGYADYKG 485

		            T G  +      GY    G

		Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615

		

		

		>PF07675#Cleaved Adhesin

		          Length = 1358

		

		 Score = 29.3 bits (65), Expect = 0.010

		 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

		

		Query: 54  DLSNIAVGQTVTVKWQGKPIFITNRTPDKIAEARAVKMSE 93

		           +L+  AVGQ VT+KW   P    N  P+         +SE

		Sbjct: 597 NLTGSAVGQKVTLKWSA-PNGTPNPNPNPNPNPGTTTLSE 635

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 53.6 bits (129), Expect = 3e-10

		 Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 38/247 (15%)

		

		Query: 7   TLMITGGTGSFGNAVLSRFLKS-------DIINDIKEIRIFSRDEKKQEDMRIAFNNPKL 59

		             ++TG  G  G  V  R L++       D +ND  ++ +       ++        P  

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSL-------KQARLELLAQPGF 54

		

		Query: 60  KCYIGDVRNYKSIDE--AMHGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAI 117

		           + +  D+ + + + +  A    + VF +     V      P    ++N+ G  N+L    

		Sbjct: 55  QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114

		

		Query: 118 NNKVTKVIVLST---------------DKAVYPINAMGLSKALMEKLAIAKARMRSPGET 162

		           +NK+  ++  S+               D   +P++    +K   E +A   + +     T

		Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174

		

		Query: 163 VLCVTRYGNVMASRGS---VIPLFINQIKQGKELTI-TEPSMTRFLMSLVDSVDLVLYAF 218

		            L   R+  V    G     +  F   + +GK + +     M R    + D  + ++   

		Sbjct: 175 GL---RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231

		

		Query: 219 EHGHQGD 225

		           +     D

		Sbjct: 232 DVIPHAD 238

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 32.5 bits (74), Expect = 0.002

		 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

		

		Query: 54  DNSRDYYANATGVVEQVSAHQGEIVKKGDILLVID--KNIAETTKSRAAALLNTKQEDYN 111

		             S++       +V+++   +GE V+KGD+LL +      A+T K++++ L    ++   

		Sbjct: 94  GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ--T 151

		

		Query: 112 RKEAL 116

		           R + L

		Sbjct: 152 RYQIL 156

		

		

		>DNABINDINGHU#Prokaryotic integration host factor signature.

		          Length = 91

		

		 Score = 56.2 bits (136), Expect = 2e-14

		 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

		

		Query: 2  MITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 59

		          M  K  LI K+ +    L+K+D   +VD +   ++  L + +++++  FGNF +R+R 

		Sbjct: 1  MANKQDLIAKVAEATE-LTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERA 57

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 30.8 bits (69), Expect = 0.025

		 Identities = 35/261 (13%), Positives = 74/261 (28%), Gaps = 18/261 (6%)

		

		Query: 466 VASSIGTNIADNNLSIDNYSIGNRTIAQQNLTPTLQLAGGIIDDGGMRVTSTDNGRQVLT 525

		               + T+ A+NN ++D +     T              G I  G    T    G     

		Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAI----AGAIKGGKEGDTFDYKGVTFTI 287

		

		Query: 526 QAVDSLVNNYRSSKLLQDSYQSQFMSSQSYLDSLNDRYSDLTTTGNSIATEIGKRLSYEE 585

		                   N    K+       +   + + + +        T   +           +  

		Sbjct: 288 DTKTGNDGN---GKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTF 344

		

		Query: 586 AKSIGITDSQYLALQQMNSDSTSATDHTGSSNRKGTSTSATGSIGVNTMFGSGMTTVGSS 645

		                   ++   L+  N+    +      +     +     ++   TMF     +  S+

		Sbjct: 345 DDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVST 404

		

		Query: 646 NTLDQDQGKSVNQQQSY---NEALSKIKSATKD-----GRLSNANSNVQSLSNNLNSNFS 697

		              +       +        + ALSK+ +          R  +A +N+ +   NLNS  S

		Sbjct: 405 LINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARS 464

		

		Query: 698 EQQSV--GQEIAQ-TKQNMQQ 715

		             +      E++  +K  + Q

		Sbjct: 465 RIEDADYATEVSNMSKAQILQ 485

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 48.4 bits (115), Expect = 6e-09

		 Identities = 16/97 (16%), Positives = 38/97 (39%)

		

		Query: 127 DFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGDTLNSLGKYQEAIENF 186

		           D  E   +   +  + GKY++A +++          +  +   G    ++G+Y  AI ++

		Sbjct: 34  DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93

		

		Query: 187 DLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223

		                   + P   ++    L+  G+  EA     ++

		Sbjct: 94  SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130

		

		

		

		 Score = 43.8 bits (103), Expect = 2e-07

		 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 3/131 (2%)

		

		Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQE 283

		            +   D     Y+ A +  Q GKY++A K F ++      +   +   G     +G+   

		Sbjct: 29  NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88

		

		Query: 284 AIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSYDLA---IKYKSDYAESYLEKG 340

		           AI +Y               +      + G+  +A     LA   I  K+++ E      

		Sbjct: 89  AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVS 148

		

		Query: 341 IVLVNLGKYKE 351

		            +L  +   KE

		Sbjct: 149 SMLEAIKLKKE 159

		

		

		

		 Score = 42.2 bits (99), Expect = 7e-07

		 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

		

		Query: 62  EEYFNIGRSLYKLGKYKKAIKNYDLAIKYKTDCAKCYNNKGRALNELANHQEAITNYDLA 121

		           E+ +++  + Y+ GKY+ A K +          ++ +   G     +  +  AI +Y   

		Sbjct: 37  EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96

		

		Query: 122 IKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIA---IKYKPSFAE 164

		              DI       +      + G+  EA     +A   I  K  F E

		Sbjct: 97  AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142

		

		

		

		 Score = 41.1 bits (96), Expect = 2e-06

		 Identities = 18/95 (18%), Positives = 30/95 (31%)

		

		Query: 164 EAYNNKGDTLNSLGKYQEAIENFDLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223

		           E   +        GKY++A + F             +   G     +GQ+  AI +Y   

		Sbjct: 37  EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96

		

		Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVI 258

		                      ++ A  L+Q G+  EA        

		Sbjct: 97  AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQ 131

		

		

		

		 Score = 35.3 bits (81), Expect = 2e-04

		 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

		

		Query: 178 KYQEAIENF-----DLA--LKYAPRYPEAYYNKGISLINLGQHQEAIKNYDISLKYKPDY 230

		           +YQ A+E+F      +A   + +    E  Y+   +    G++++A K +          

		Sbjct: 10  EYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69

		

		Query: 231 ANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQEAIKNYDL 290

		           +  +         +G+Y  AI ++                        G+  EA     L

		Sbjct: 70  SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129

		

		Query: 291 A---IKYKPNF 298

		           A   I  K  F

		Sbjct: 130 AQELIADKTEF 140

		

		

		

		 Score = 34.5 bits (79), Expect = 3e-04

		 Identities = 15/87 (17%), Positives = 28/87 (32%)

		

		Query: 112 QEAITNYDLAIKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGD 171

		           ++A   +      D   +  +   G   + +G+Y  AI  Y+              +  +

		Sbjct: 53  EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112

		

		Query: 172 TLNSLGKYQEAIENFDLALKYAPRYPE 198

		            L   G+  EA     LA +      E

		Sbjct: 113 CLLQKGELAEAESGLFLAQELIADKTE 139

		

		

		

		 Score = 33.7 bits (77), Expect = 6e-04

		 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

		

		Query: 263 DNEDAYNLKGCIFSILGKQQEAIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSY 322

		             E  Y+L        GK ++A K +          +  +   G   + +G+Y  AI SY

		Sbjct: 35  TLEQLYSL-AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93

		

		Query: 323 DLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLA 359

		                               L+  G+  EA+    LA

		Sbjct: 94  SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130

		

		

		

		 Score = 28.7 bits (64), Expect = 0.024

		 Identities = 15/86 (17%), Positives = 28/86 (32%)

		

		Query: 304 NKGTSFRKLGKYQDAIKSYDLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLAFKYK 363

		           +   +  + GKY+DA K +          +  +L  G     +G+Y  A  +++      

		Sbjct: 41  SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100

		

		Query: 364 SNLIEEYEAIIKALRQLGNDLMANEF 389

		                      + L Q G    A   

		Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESG 126

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score = 34.8 bits (79), Expect = 3e-04

		 Identities = 16/38 (42%), Positives = 25/38 (65%)

		

		Query: 277 EGLQVGKAQGIQIGEAKGIQIGEAKGIQIGKAEGKAEE 314

		           +G Q G A+G Q G  +G Q G A+G++ G AE K+++

		Sbjct: 54  QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQ 91

		

		

		

		 Score = 32.8 bits (74), Expect = 0.001

		 Identities = 15/36 (41%), Positives = 22/36 (61%)

		

		Query: 267 QQEGKELGILEGLQVGKAQGIQIGEAKGIQIGEAKG 302

		            ++G + GI EG Q G  QG Q G A+G++ G A+ 

		Sbjct: 52  HEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 28.3 bits (63), Expect = 0.035

		 Identities = 9/22 (40%), Positives = 12/22 (54%)

		

		Query: 103 NLLIFGPSGVGKSHLAAAIGYA 124

		            L+I G SG GK  +A A+   

		Sbjct: 162 TLMITGESGTGKELVARALHDY 183

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 27.9 bits (62), Expect = 0.007

		 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

		

		Query: 18  AEFKESAIKLAIE-SKQPVAQTARELGITKSSLYNWVNKY 56

		           AE +   I  A+  ++    + A  LG+ +++L   + + 

		Sbjct: 434 AEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 35.7 bits (82), Expect = 2e-05

		 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

		

		Query: 42  FINREGYGVALASLDNTIVGFIAWSKSLLFVSDKTRIHIEVLVIDENYRGKQIGKKLMEY 101

		           ++  EG    L  L+N  +G I    +           IE + + ++YR K +G  L+  

		Sbjct: 59  YVEEEGKAAFLYYLENNCIGRIKIRSNW-----NGYALIEDIAVAKDYRKKGVGTALLHK 113

		

		Query: 102 LEEIAK 107

		             E AK

		Sbjct: 114 AIEWAK 119

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 64.5 bits (157), Expect = 9e-13

		 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 19/134 (14%)

		

		Query: 336 VMGHVDHGKTSLLDALKSTDIAAGELG------------------GITQHIGAYRVTLAD 377

		           V+ HVD GKT+L ++L     A  ELG                  GIT   G       +

		Sbjct: 8   VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67

		

		Query: 378 GRAITFIDTPGHEAFSEMRSRGAKVTDIVIIVVAADDGIKTQTVEAINHAKAAGVPIIVA 437

		            + +  IDTPGH  F     R   V D  I++++A DG++ QT    +  +  G+P I  

		Sbjct: 68  TK-VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFF 126

		

		Query: 438 INKIDKPDIDIERV 451

		           INKID+  ID+  V

		Sbjct: 127 INKIDQNGIDLSTV 140

		

		

		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.

		          Length = 1291

		

		 Score = 31.5 bits (71), Expect = 0.034

		 Identities = 64/289 (22%), Positives = 95/289 (32%), Gaps = 59/289 (20%)

		

		Query: 419 TGNFTGDASNPGNTAGVITFAANGTLASA-----SADANVAVTNNITAIEASGV---GVV 470

		           T   TG+ +    T G    A  G +AS      + D   +   NI A    G       

		Sbjct: 278 TSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPND 337

		

		Query: 471 QLSGTHTAELRLGNAGSVFQLADGTVINGKVNQ-------TAVVGGALAAGAITLDGSAT 523

		           + S T     +     S    ++  VIN   +        T V+ G  A G  T+     

		Sbjct: 338 KPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINR 397

		

		Query: 524 IT----GDIGNGGGAAAL-----------QGITLANDA----------TKTLTLGGANII 558

		           I     G I  GG  A+L            GI L+N A          T  +T+ G   +

		Sbjct: 398 INTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRV 457

		

		Query: 559 GSNVGG-TIDFQANGGTIKLTSTQNNILVDFDLDITTDQTGVVDASSLTNA--------- 608

		            + VGG  +   +     K  +   N    F+ DI+  +   +   + T           

		Sbjct: 458 NNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNG 517

		

		Query: 609 --QTLTISGTIGTIGANNKTLGQFNIGSSKTALNGGNVAINELVIGNNG 655

		              TL  SG    +  N          ++ T +   N  INELV+  NG

		Sbjct: 518 GFNTLDFSGVTNKVNINKLI-------TASTNVAVKNFNINELVVKTNG 559

		

		

		

		 Score = 31.5 bits (71), Expect = 0.041

		 Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

		

		Query: 143 NAQAAATKNAQNVVAPFNGGAA----IANNDLSGVGTIDWGAADSTLVFNLANPTTQKAP 198

		           +AQ    +  Q +  PF GG      I   + +  GTI  G   ++L  N A+    K  

		Sbjct: 369 SAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKGG 428

		

		Query: 199 LVLGNNA----VIANGVNGTL---------NVTNGFIQVSDKSFATVKAINIGDGQGFIF 245

		           + L N A    ++   + G +         N   G+      +    KA          F

		Sbjct: 429 INLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATF 488

		

		Query: 246 NTDATVGNALNLQAGGATINFNGTD-GTGRLVLLSKNGAATDFNV 289

		           N D ++G  +NL+    T NF G D G G    L  +G     N+

		Sbjct: 489 NNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNI 533

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 34.1 bits (78), Expect = 0.002

		 Identities = 32/183 (17%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

		

		Query: 381 LLLIILFIFLYKAADSIPMAMSSP-LFLDLSFTTHEIAVIYKAYGLLIMIVGGALGGVLA 439

		           +L+ +  +  +   + + + +S P +  D +        +  A+ +L   +G A+ G L+

		Sbjct: 15  ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAF-MLTFSIGTAVYGKLS 73

		

		Query: 440 AKMGIFHSVLIGGVIQLLSPLMFMILATIGYDIKPF-ILTVTVQNFCAGFAGTIISIYFA 498

		            ++GI   +L G +I         ++  +G+      I+   +Q   A     ++ +  A

		Sbjct: 74  DQLGIKRLLLFGIIINCFGS----VIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129

		

		Query: 499 SLCNSEFVATQYSIIASFSSLSRIILASLGGICAKYLTWPVFFLGNTLFSMLFIPIFYKI 558

		                E     + +I S  ++   +  ++GG+ A Y+ W    L   + +++ +P   K+

		Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI-TIITVPFLMKL 188

		

		Query: 559 YRK 561

		            +K

		Sbjct: 189 LKK 191

		

		

		>BONTOXILYSIN#Bontoxilysin signature.

		          Length = 1196

		

		 Score = 30.3 bits (68), Expect = 0.046

		 Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

		

		Query: 132 KVNIKNFNSLINSLSNKLITDFENNYLDSAFQKLDNITNNILNDLNEFGAE 182

		            ++I++  +  NS   +++ +  + Y    F       +NI+ D++     

		Sbjct: 810 FLDIQSIKNFFNSQVEQVMKEILSPYQLLLFASKGP-NSNIIEDISGKNTL 859

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 37.3 bits (86), Expect = 7e-04

		 Identities = 31/290 (10%), Positives = 62/290 (21%), Gaps = 1/290 (0%)

		

		Query: 353 LNGALSQVTGNIGNTNSLATISIGAGTATLGGAVIKATTIDLTDAASVLTLTNANA-VLT 411

		           L+           N     TI +        G                L  +  N     

		Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196

		

		Query: 412 GAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATLGGAVIKATTTDLTD 471

		                                +            A               +    T  + 

		Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256

		

		Query: 472 AASVLTLTNANAVLTGAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISIGAGTAT 531

		           A +      A A+  G   +T     V         +   G +  T +   +++     T

		Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316

		

		Query: 532 LGGAVIKATTTDLTDAASVLTLTNANAVLTGAIDNTKGVDNVGVLNLNGALSQVTGNIGN 591

		            G A + A T   +       +           + +  + ++   N     S++T N   

		Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376

		

		Query: 592 TNSLATISVGAGTATLGGAVIKATTIDLTDAASVLTLTNANAVLTGAIDN 641

		             + A                 A+ +             + A    +ID+

		Sbjct: 377 YTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426

		

		

		

		 Score = 35.4 bits (81), Expect = 0.002

		 Identities = 44/295 (14%), Positives = 67/295 (22%), Gaps = 5/295 (1%)

		

		Query: 503 LNGALSQVTGNIGNTNSLATISIGAGTATLGGAVIKATTTDLTDAASVLTLTNANAVLTG 562

		           L+           N     TI +        G                L  +  N     

		Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196

		

		Query: 563 AIDNTKGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATLGGAVIKATTIDLTDA 622

		                     V V     + + VT     T         A            T +DL   

		Sbjct: 197 TYAVGANKYRVDV----NSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKT 252

		

		Query: 623 ASVLTLTNANAVLTGAIDNTTGVDNVGVLNLNGALSQVTGNIGNTNSLATISVGAGTATL 682

		                 T     + GAI      D      +   +   TGN GN     TI+ G      

		Sbjct: 253 TKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTIN-GEKVTLT 311

		

		Query: 683 GGAVIKATTIDLTDAASVLTLTNANAVLTGAIDNTKGVDNVGVLNLNGALSQVTGNIGNT 742

		              +                    + V      + K  +    L+   A + V G    T

		Sbjct: 312 VADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKIT 371

		

		Query: 743 NSLATISIGAGTATLGGAVIKATTIDLTDAASVLTLTNANAVLTGAIDNTTGVDN 797

		            + A  +  A    +  A             S L   +A A      +    +D+

		Sbjct: 372 VNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDS 426

		

		

		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein

		           signature.

		          Length = 533

		

		 Score = 30.7 bits (69), Expect = 0.005

		 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

		

		Query: 131 YVDFVDLSMFKVFTGAGVG-AAFIKEKINSKDIKDGVTKTFNGTTKNKTNFAYQLSLGTS 189

		           Y D V    F ++ G G G  ++   KI++KD+            K  T      +LG +

		Sbjct: 445 YADLVTTESFSIYGGVGAGLGSYTYAKIDNKDV------------KGYTGMVASGALGVA 492

		

		Query: 190 FEVAQGVKAEL 200

		              A+GV  +L

		Sbjct: 493 INAAEGVCVDL 503

		

		

		>OUTRMMBRANEA#Outer membrane protein A signature.

		          Length = 346

		

		 Score = 40.7 bits (95), Expect = 2e-06

		 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 21/187 (11%)

		

		Query: 6   KLLLIAATSATILSSSLSFAEGMDNEWYLRIDTGAAMFNEEKDKATGVKLKSNTTVPVDL 65

		           K   IA   A    ++++ A   DN WY     G + +++            N       

		Sbjct: 2   KKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAF 61

		

		Query: 66  GIGYYISENCRADLTLGTIIGGKLKKSGAATNAPFTGTNVSASHKPTITRLLINGYVDLT 125

		           G GY ++     +  +G    G++   G+  N  +    V  + K               

		Sbjct: 62  G-GYQVNPYVGFE--MGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPIT--------- 109

		

		Query: 126 NFDMFDVFAGAGVGPALVKEKITYNGITGLSSNTKNRTNISYKLTLGTSAQIADGVKVEL 185

		             D  D++   G     V    T + + G + +T     +S     G    I   +   L

		Sbjct: 110 --DDLDIYTRLGGM---VWRADTKSNVYGKNHDTG----VSPVFAGGVEYAITPEIATRL 160

		

		Query: 186 AYSWIDD 192

		            Y W ++

		Sbjct: 161 EYQWTNN 167

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 32.8 bits (75), Expect = 0.007

		 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

		

		Query: 383 NILVTGL-GPAGFSLSYYLLRSGHNVVAIDGL 413

		             LVTG  G  GF +S  LL +GH VV ID L

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNL 33

		

		

		>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.

		          Length = 1147

		

		 Score = 28.5 bits (63), Expect = 0.033

		 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 25/99 (25%)

		

		Query: 49  IEGITEIGENTVIYPFSSIGQPPQILKYANERSSTIIGSNNTIR-EYVTVQAGSQGG--- 104

		           +EG+ +I  N   Y F+      Q+L + N  SS ++GS+N I  E V++  G  GG   

		Sbjct: 277 VEGVADIDPN---YKFN------QLLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGPGA 327

		

		Query: 105 --------GMVTRVGNNNLFMVGVHIGHDCKIGNNVVFA 135

		                   G   + GNN   ++ VH+    K G+ +V A

		Sbjct: 328 RHDWNATVGYKDQQGNNVATIINVHM----KNGSGLVIA 362

		

		

		>ADHESNFAMILY#Adhesin family signature.

		          Length = 309

		

		 Score = 94.5 bits (235), Expect = 2e-24

		 Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 27/250 (10%)

		

		Query: 51  KQAFAGMMTYLALLFLTFLSL-----TSYAKPKIVVSITPIGSIVSMLVKDKADIESLAI 105

		           K+    ++ +L+ + L   +      TS  K K+V + + I  I   +  DK D+ S+  

		Sbjct: 2   KKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP 61

		

		Query: 106 SSDCPHHYNLKPSDLVKVKNSDIAIYI--------NEQFDGFAEKLIDNYSKNIIKISDI 157

		               PH Y   P D+ K   +D+  Y         N  F    E      +K+   +SD 

		Sbjct: 62  IGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDG 121

		

		Query: 158 KSLTTI-------KDNWHIWLDLNNAVILLQEFARIFSENFPELQEDINNNLSTALKELN 210

		             +  +       K++ H WL+L N +I  +  A+  S   P  +E    NL     +L+

		Sbjct: 122 VDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLD 181

		

		Query: 211 KLQEIKNNELATI----KDVILLSDSSEYFFLNTNIKTAKLY---SESQTSLRYISKLED 263

		           KL +   ++   I    K ++    + +YF     + +A ++   +E + +   I  L +

		Sbjct: 182 KLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVE 241

		

		Query: 264 LIKESNNKCL 273

		            ++++    L

		Sbjct: 242 KLRQTKVPSL 251

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 32.3 bits (73), Expect = 0.018

		 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 4/157 (2%)

		

		Query: 321 TKNTKSLQKLYMQLTSAQKTIETLKSKAEKIETQIKVGGEDKNKIKKLEKKLTSKNNKAD 380

		                   +L   L  A        +K + +E +       K  ++K  +   + +    

		Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245

		

		Query: 381 RLFQKIEK--IDIPANKISIESQETVPVTTASTQVSAFQAQQARINEAQQGVLVQKNQQH 438

		              + +E     + A +  +E      +  ++   +  +  +A     +        +  

		Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA--EKADLEHQ 303

		

		Query: 439 IAAEKTKKQRQAEDKQRTEREKKKQEAQKQLSEIKKQ 475

		                  +Q    D   +   KK+ EA+ Q  E + +

		Sbjct: 304 SQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340

		

		

		

		 Score = 32.0 bits (72), Expect = 0.026

		 Identities = 21/193 (10%), Positives = 51/193 (26%)

		

		Query: 324 TKSLQKLYMQLTSAQKTIETLKSKAEKIETQIKVGGEDKNKIKKLEKKLTSKNNKADRLF 383

		                 L  +    +K +E   + +     +IK    +K  ++  + +L      A    

		Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206

		

		Query: 384 QKIEKIDIPANKISIESQETVPVTTASTQVSAFQAQQARINEAQQGVLVQKNQQHIAAEK 443

		                                     + + +   +                 +   A  +

		Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266

		

		Query: 444 TKKQRQAEDKQRTEREKKKQEAQKQLSEIKKQEQAIKTAADKAKEVAASAKKETSRTALR 503

		              +           + K  EA+K   E +K +   ++    A   +     + SR A +

		Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326

		

		Query: 504 TMQDKMNGYSEQL 516

		            ++ +     EQ 

		Sbjct: 327 QLEAEHQKLEEQN 339

		

		

		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

		           signature.

		          Length = 522

		

		 Score = 39.8 bits (92), Expect = 8e-06

		 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

		

		Query: 162 HPEKYNFNYYISG---SEEIAPIKIFDDGEFTYLQFRDKNAEISGIFAVDDSLRESLVNY 218

		           +P   N+NYY +    S+ I P +IFDDG FTY  F++   +   IF V    + S+ + 

		Sbjct: 395 NPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQ-PAIFVVQPDGKLSMTD- 452

		

		Query: 219 RLAQDNPNMVIL-------EQVFPKLAIRKGKKVTCVFNQSF 253

		             A  +PNM           ++  K  + K K +  V N+ +

		Sbjct: 453 --AAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGY 492

		

		

		

		 Score = 33.6 bits (76), Expect = 6e-04

		 Identities = 15/33 (45%), Positives = 20/33 (60%)

		

		Query: 61 IELARDEEIVSISMGDTTSWQIVPAGHRIFIKP 93

		          I+L +DE I  I+ G    W IVP  + IFI+P

		Sbjct: 67 IQLEKDETISYITTGFNKGWSIVPNSNHIFIQP 99

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score =  193 bits (493), Expect = 3e-64

		 Identities = 42/211 (19%), Positives = 68/211 (32%), Gaps = 2/211 (0%)

		

		Query: 22  KSGEYFIDARKWYNFKYILPLSHRSLLLLICTIFTLLLTLICININILLPTNQKVSYLIK 81

		           +   YF +A  W   K       + L  ++  +   L T   + +  L P      Y+I 

		Sbjct: 9   ELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVIT 68

		

		Query: 82  DDAEKQAA-ITNTKHSTLANPYI-SVANIMLQNYVNQREEYNYDILKEQFTFIKNASTSI 139

		            D     A I    H      Y  +V    L  YV  RE +     +E F  +   S   

		Sbjct: 69  VDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARP 128

		

		Query: 140 VYMQFANFMHIDNPLSPVIRYQKLYRRSINILSINNINDNEAVVTFESLAKNSTGAILEN 199

		              +++ F   DNP SP           + I  ++ +  N A V F   +   + +   +

		Sbjct: 129 EQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNSTKTD 188

		

		Query: 200 MVWEARIGFIMDSISTSTSPDMPFNFTVTSY 230

		            V   +                P  + V SY

		Sbjct: 189 AVATIKYKVDGTPSKEVDRFKNPLGYQVESY 219

		

		

		>PF04335#VirB8 type IV secretion protein

		          Length = 227

		

		 Score =  179 bits (456), Expect = 1e-58

		 Identities = 39/209 (18%), Positives = 82/209 (39%), Gaps = 4/209 (1%)

		

		Query: 36  TQNWYEERSDKLLVQRNLLIILIILLTIFMVISTLVIAFVVKSKQFDPFVIQLNSNTGRA 95

		             +W  ++       + L  ++  +         + +A +   K  +P+VI ++ NTG A

		Sbjct: 17  AASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEA 76

		

		Query: 96  SVVEPISSP-VLTTDESLTRYFIKKYITARETYNPVDFATIARTTIRLFSTSSVYYNYLG 154

		           S+   +     +T DE++ +YF+  Y+  RE +            + + S       +  

		Sbjct: 77  SIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAR-EEYFDAVMVMSARPEQDRWSR 135

		

		Query: 155 YIR-NKDFDPTLKYKEENTTFLVIKSWSKIAADKYIVRFSVNETSGNQL-VYNKIAVVSY 212

		           + + +    P          F+ IK  S +  +   V F+    +G+     + +A + Y

		Sbjct: 136 FYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNSTKTDAVATIKY 195

		

		Query: 213 AYVPMQLTDSELDVNPVGFQVNGYRVDDD 241

		                   + +   NP+G+QV  YR D +

		Sbjct: 196 KVDGTPSKEVDRFKNPLGYQVESYRADVE 224

		

		

		>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein

		           signature.

		          Length = 522

		

		 Score = 31.3 bits (70), Expect = 0.001

		 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

		

		Query: 71  IEFAKNEEIQNIILGDAYAWKITPLANRLFIKPLEKDIRTNM 112

		           I+  K+E I  I  G    W I P +N +FI+P  K +++N+

		Sbjct: 67  IQLEKDETISYITTGFNKGWSIVPNSNHIFIQP--KSVKSNL 106

		

		

		

		 Score = 27.4 bits (60), Expect = 0.029

		 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

		

		Query: 93  TPLANRLFIKPLEKDIRTNMTIITNKRIYEFDIASTELMMGNERDLVYVIKFYYPKKN 150

		           +P  N + + P +   RTN+ + TNK +Y+F +   +    N       +K  YP+++

		Sbjct: 262 SPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQ--KDNFASAYLTVKLEYPQRH 317

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 32.6 bits (74), Expect = 0.002

		 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

		

		Query: 67  QIPSNIVKPVMEVD-DNIPEIPKLPDPPKLETPTAPPPPPVVKVPPVLPPTTPVEENKDK 125

		             P  +V+P  E +    P         K +    P P PV KV        PVE     

		Sbjct: 68  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127

		

		Query: 126 TFPLPPVSLPSTSGTLVESDAE 147

		            F     + P++S     +   

		Sbjct: 128 PFENTAPARPTSSTATAATSKP 149

		

		

		>FLAGELLIN#Flagellin signature.

		          Length = 507

		

		 Score = 30.8 bits (69), Expect = 0.025

		 Identities = 35/261 (13%), Positives = 74/261 (28%), Gaps = 18/261 (6%)

		

		Query: 466 VASSIGTNIADNNLSIDNYSIGNRTIAQQNLTPTLQLAGGIIDDGGMRVTSTDNGRQVLT 525

		               + T+ A+NN ++D +     T              G I  G    T    G     

		Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAI----AGAIKGGKEGDTFDYKGVTFTI 287

		

		Query: 526 QAVDSLVNNYRSSKLLQDSYQSQFMSSQSYLDSLNDRYSDLTTTGNSIATEIGKRLSYEE 585

		                   N    K+       +   + + + +        T   +           +  

		Sbjct: 288 DTKTGNDGN---GKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTF 344

		

		Query: 586 AKSIGITDSQYLALQQMNSDSTSATDHTGSSNRKGTSTSATGSIGVNTMFGSGMTTVGSS 645

		                   ++   L+  N+    +      +     +     ++   TMF     +  S+

		Sbjct: 345 DDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVST 404

		

		Query: 646 NTLDQDQGKSVNQQQSY---NEALSKIKSATKD-----GRLSNANSNVQSLSNNLNSNFS 697

		              +       +        + ALSK+ +          R  +A +N+ +   NLNS  S

		Sbjct: 405 LINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARS 464

		

		Query: 698 EQQSV--GQEIAQ-TKQNMQQ 715

		             +      E++  +K  + Q

		Sbjct: 465 RIEDADYATEVSNMSKAQILQ 485

		

		

		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

		           chaperone signature.

		          Length = 168

		

		 Score = 48.4 bits (115), Expect = 6e-09

		 Identities = 16/97 (16%), Positives = 38/97 (39%)

		

		Query: 127 DFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGDTLNSLGKYQEAIENF 186

		           D  E   +   +  + GKY++A +++          +  +   G    ++G+Y  AI ++

		Sbjct: 34  DTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93

		

		Query: 187 DLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223

		                   + P   ++    L+  G+  EA     ++

		Sbjct: 94  SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130

		

		

		

		 Score = 43.8 bits (103), Expect = 2e-07

		 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 3/131 (2%)

		

		Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQE 283

		            +   D     Y+ A +  Q GKY++A K F ++      +   +   G     +G+   

		Sbjct: 29  NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88

		

		Query: 284 AIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSYDLA---IKYKSDYAESYLEKG 340

		           AI +Y               +      + G+  +A     LA   I  K+++ E      

		Sbjct: 89  AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVS 148

		

		Query: 341 IVLVNLGKYKE 351

		            +L  +   KE

		Sbjct: 149 SMLEAIKLKKE 159

		

		

		

		 Score = 42.2 bits (99), Expect = 7e-07

		 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

		

		Query: 62  EEYFNIGRSLYKLGKYKKAIKNYDLAIKYKTDCAKCYNNKGRALNELANHQEAITNYDLA 121

		           E+ +++  + Y+ GKY+ A K +          ++ +   G     +  +  AI +Y   

		Sbjct: 37  EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96

		

		Query: 122 IKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIA---IKYKPSFAE 164

		              DI       +      + G+  EA     +A   I  K  F E

		Sbjct: 97  AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142

		

		

		

		 Score = 41.1 bits (96), Expect = 2e-06

		 Identities = 18/95 (18%), Positives = 30/95 (31%)

		

		Query: 164 EAYNNKGDTLNSLGKYQEAIENFDLALKYAPRYPEAYYNKGISLINLGQHQEAIKNYDIS 223

		           E   +        GKY++A + F             +   G     +GQ+  AI +Y   

		Sbjct: 37  EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96

		

		Query: 224 LKYKPDYANAYYNKATSLMQLGKYQEAIKNFDSVI 258

		                      ++ A  L+Q G+  EA        

		Sbjct: 97  AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQ 131

		

		

		

		 Score = 35.3 bits (81), Expect = 2e-04

		 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

		

		Query: 178 KYQEAIENF-----DLA--LKYAPRYPEAYYNKGISLINLGQHQEAIKNYDISLKYKPDY 230

		           +YQ A+E+F      +A   + +    E  Y+   +    G++++A K +          

		Sbjct: 10  EYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYD 69

		

		Query: 231 ANAYYNKATSLMQLGKYQEAIKNFDSVIKYQCDNEDAYNLKGCIFSILGKQQEAIKNYDL 290

		           +  +         +G+Y  AI ++                        G+  EA     L

		Sbjct: 70  SRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFL 129

		

		Query: 291 A---IKYKPNF 298

		           A   I  K  F

		Sbjct: 130 AQELIADKTEF 140

		

		

		

		 Score = 34.5 bits (79), Expect = 3e-04

		 Identities = 15/87 (17%), Positives = 28/87 (32%)

		

		Query: 112 QEAITNYDLAIKYDIDFAEAYNNKGVSYKKLGKYQEAIRLYNIAIKYKPSFAEAYNNKGD 171

		           ++A   +      D   +  +   G   + +G+Y  AI  Y+              +  +

		Sbjct: 53  EDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAE 112

		

		Query: 172 TLNSLGKYQEAIENFDLALKYAPRYPE 198

		            L   G+  EA     LA +      E

		Sbjct: 113 CLLQKGELAEAESGLFLAQELIADKTE 139

		

		

		

		 Score = 33.7 bits (77), Expect = 6e-04

		 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

		

		Query: 263 DNEDAYNLKGCIFSILGKQQEAIKNYDLAIKYKPNFAAAYCNKGTSFRKLGKYQDAIKSY 322

		             E  Y+L        GK ++A K +          +  +   G   + +G+Y  AI SY

		Sbjct: 35  TLEQLYSL-AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93

		

		Query: 323 DLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLA 359

		                               L+  G+  EA+    LA

		Sbjct: 94  SYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130

		

		

		

		 Score = 28.7 bits (64), Expect = 0.024

		 Identities = 15/86 (17%), Positives = 28/86 (32%)

		

		Query: 304 NKGTSFRKLGKYQDAIKSYDLAIKYKSDYAESYLEKGIVLVNLGKYKEAKENFNLAFKYK 363

		           +   +  + GKY+DA K +          +  +L  G     +G+Y  A  +++      

		Sbjct: 41  SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100

		

		Query: 364 SNLIEEYEAIIKALRQLGNDLMANEF 389

		                      + L Q G    A   

		Sbjct: 101 IKEPRFPFHAAECLLQKGELAEAESG 126

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score = 34.8 bits (79), Expect = 3e-04

		 Identities = 16/38 (42%), Positives = 25/38 (65%)

		

		Query: 277 EGLQVGKAQGIQIGEAKGIQIGEAKGIQIGKAEGKAEE 314

		           +G Q G A+G Q G  +G Q G A+G++ G AE K+++

		Sbjct: 54  QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQ 91

		

		

		

		 Score = 32.8 bits (74), Expect = 0.001

		 Identities = 15/36 (41%), Positives = 22/36 (61%)

		

		Query: 267 QQEGKELGILEGLQVGKAQGIQIGEAKGIQIGEAKG 302

		            ++G + GI EG Q G  QG Q G A+G++ G A+ 

		Sbjct: 52  HEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEA 87

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 28.3 bits (63), Expect = 0.035

		 Identities = 9/22 (40%), Positives = 12/22 (54%)

		

		Query: 103 NLLIFGPSGVGKSHLAAAIGYA 124

		            L+I G SG GK  +A A+   

		Sbjct: 162 TLMITGESGTGKELVARALHDY 183