S.No | Start | End | Bias | Virulence | Insertion elements | Prediction |
1 | SPCG_0001 | SPCG_0020 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0001 | -1 | 15 | -4.451660 | chromosomal replication initiation protein | |
SPCG_0002 | 0 | 17 | -4.606237 | DNA polymerase III subunit beta | |
SPCG_0003 | 0 | 18 | -4.408705 | hypothetical protein | |
SPCG_0004 | 0 | 19 | -5.003728 | GTP-dependent nucleic acid-binding protein EngD | |
SPCG_0005 | 1 | 22 | -5.944586 | peptidyl-tRNA hydrolase | |
SPCG_0006 | 1 | 22 | -5.954545 | transcription-repair coupling factor | |
SPCG_0007 | 0 | 22 | -4.850976 | S4 domain-containing protein | |
SPCG_0008 | -1 | 21 | -4.691417 | hypothetical protein | |
SPCG_0009 | -1 | 22 | -4.616155 | hypothetical protein | |
SPCG_0010 | -1 | 20 | -3.772234 | mesJ/ycf62 family protein | |
SPCG_0011 | 0 | 22 | -2.923634 | hypoxanthine-guanine phosphoribosyltransferase | |
SPCG_0012 | 0 | 19 | -2.319940 | cell division protein FtsH | |
SPCG_0013 | 4 | 21 | -5.112967 | transcriptional regulator ComX1 | |
SPCG_0014 | 2 | 25 | -2.481287 | ***IS630-Spn1, transposase Orf1 | |
SPCG_0015 | 2 | 27 | -1.090407 | hypothetical protein | |
SPCG_0016 | 2 | 28 | -0.086908 | hypothetical protein | |
SPCG_0017 | 2 | 28 | 0.402249 | hypothetical protein | |
SPCG_0018 | 0 | 26 | 2.639635 | hypothetical protein | |
SPCG_0019 | 0 | 24 | 3.177917 | adenylosuccinate synthetase | |
SPCG_0020 | -3 | 27 | 3.471379 | cytidine/deoxycytidylate deaminase family |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0012 | HTHFIS | 36 | 6e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |
2 | SPCG_0109 | SPCG_0151 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0109 | 2 | 20 | -4.666578 | argininosuccinate synthase, truncation | |
SPCG_0110 | 2 | 25 | -7.059513 | hypothetical protein | |
SPCG_0111 | 6 | 31 | -7.628500 | transporter truncation | |
SPCG_0112 | 5 | 30 | -8.370068 | hypothetical protein | |
SPCG_0113 | 4 | 29 | -8.792579 | hypothetical protein | |
SPCG_0114 | 2 | 30 | -9.769176 | hypothetical protein | |
SPCG_0115 | 4 | 24 | -5.514598 | hypothetical protein | |
SPCG_0116 | 1 | 18 | -1.610914 | hypothetical protein | |
SPCG_0117 | 1 | 18 | -1.226110 | hypothetical protein | |
SPCG_0118 | -2 | 15 | 2.436458 | hypothetical protein | |
SPCG_0119 | -3 | 17 | 3.477152 | hypothetical protein | |
SPCG_0120 | -2 | 21 | 5.195927 | surface protein A | |
SPCG_0121 | 1 | 27 | 6.039884 | tRNA-specific 2-thiouridylase MnmA | |
SPCG_0122 | 1 | 25 | 5.488837 | mutT/nudix family protein | |
SPCG_0123 | 1 | 26 | 5.325603 | tRNA uridine 5-carboxymethylaminomethyl | |
SPCG_0124 | 1 | 26 | 3.589144 | metallo-beta-lactamase superfamily protein | |
SPCG_0125 | 2 | 22 | 1.821516 | hypothetical protein | |
SPCG_0126 | 0 | 24 | 2.520432 | hypothetical protein | |
SPCG_0127 | 0 | 24 | 5.308858 | competence-induced protein Ccs1, truncated | |
SPCG_0128 | 0 | 24 | 4.658591 | hypothetical protein | |
SPCG_0129 | -1 | 25 | 4.719838 | hypothetical protein | |
SPCG_0130 | -2 | 22 | 2.555420 | hypothetical protein | |
SPCG_0131 | -1 | 20 | 0.752957 | ribosomal-protein-alanine acetyltransferase | |
SPCG_0132 | 1 | 22 | -2.766494 | DNA-binding/iron metalloprotein/AP endonuclease | |
SPCG_0133 | 2 | 26 | -7.657357 | degenerate transposase | |
SPCG_0134 | 2 | 28 | -9.051114 | degenerate transposase | |
SPCG_0135 | 2 | 34 | -12.004864 | hypothetical protein | |
SPCG_0136 | 1 | 33 | -11.610958 | glycosyl transferase family protein | |
SPCG_0137 | 1 | 33 | -11.795574 | glycosyl transferase family protein | |
SPCG_0138 | 1 | 29 | -10.193195 | ABC transporter ATP-binding protein | |
SPCG_0139 | 1 | 28 | -10.161825 | hypothetical protein | |
SPCG_0140 | 1 | 29 | -10.630530 | hypothetical protein | |
SPCG_0141 | 1 | 29 | -9.686101 | hypothetical protein | |
SPCG_0142 | 2 | 30 | -9.978213 | UDP-glucose dehydrogenase | |
SPCG_0143 | 1 | 27 | -9.263814 | transcriptional regulator | |
SPCG_0144 | 2 | 29 | -9.699129 | bacteriocin | |
SPCG_0145 | 2 | 26 | -8.611182 | lantibiotic biosynthesis protein | |
SPCG_0146 | 4 | 21 | -5.171890 | lantibiotic biosynthesis protein | |
SPCG_0147 | 1 | 13 | -3.277529 | lantibiotic efflux protein | |
SPCG_0148 | 0 | 15 | -0.574373 | hypothetical protein | |
SPCG_0149 | -2 | 13 | 1.554486 | hypothetical protein | |
SPCG_0150 | -1 | 14 | 2.213225 | hypothetical protein | |
SPCG_0151 | -2 | 19 | 3.653874 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0112 | PRTACTNFAMLY | 27 | 0.023 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0120 | GPOSANCHOR | 67 | 7e-14 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0125 | BACINVASINB | 25 | 0.047 | Salmonella/Shigella invasin protein B signature. | |
>BACINVASINB#Salmonella/Shigella invasin protein B signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0131 | SACTRNSFRASE | 30 | 0.002 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. |
3 | SPCG_0167 | SPCG_0176 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0167 | 2 | 21 | -1.383762 | hypothetical protein | |
SPCG_0168 | 3 | 23 | -3.032292 | hypothetical protein | |
SPCG_0169 | 0 | 24 | -4.750234 | hypothetical protein | |
SPCG_0170 | 0 | 25 | -4.914936 | tetracycline resistance determinant leader | |
SPCG_0171 | -1 | 24 | -4.739460 | tetracycline resistance protein TetM | |
SPCG_0172 | 0 | 24 | -5.213880 | rRNA methylase | |
SPCG_0173 | 1 | 25 | -4.858248 | resolvase | |
SPCG_0174 | 1 | 21 | -4.341351 | transposase | |
SPCG_0175 | 0 | 18 | -4.098287 | hypothetical protein | |
SPCG_0176 | 0 | 17 | -3.986584 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0167 | IGASERPTASE | 39 | 7e-05 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0171 | TCRTETOQM | 1111 | 0.0 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0173 | HTHTETR | 27 | 0.032 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. |
4 | SPCG_0196 | SPCG_0201 | Y ![]() | N | N | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0196 | -1 | 22 | 3.598267 | hypothetical protein | |
SPCG_0197 | -1 | 24 | 4.276564 | mccC family protein | |
SPCG_0198 | -1 | 24 | 4.360369 | hypothetical protein | |
SPCG_0199 | -1 | 22 | 3.877181 | hypothetical protein | |
SPCG_0200 | 0 | 22 | 3.753408 | magnesium transporter CorA family protein | |
SPCG_0201 | -2 | 20 | 3.936342 | excinuclease ABC subunit A |
5 | SPCG_0251 | SPCG_0290 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0251 | -1 | 24 | -4.208349 | hypothetical protein | |
SPCG_0252 | -1 | 23 | -5.200963 | hypothetical protein | |
SPCG_0253 | -2 | 25 | -6.807982 | hypothetical protein | |
SPCG_0254 | -1 | 31 | -8.204838 | hypothetical protein | |
SPCG_0255 | -3 | 32 | -7.959950 | hypothetical protein | |
SPCG_0256 | -1 | 31 | -7.397713 | pyruvate formate-lyase-activating enzyme | |
SPCG_0257 | 0 | 30 | -5.755868 | DeoR family transcriptional regulator | |
SPCG_0258 | 1 | 29 | -5.135979 | transcriptional regulator | |
SPCG_0259 | 3 | 29 | -4.096254 | PTS system transporter subunit IIA | |
SPCG_0260 | 1 | 18 | -1.378321 | PTS system transporter subunit IIB | |
SPCG_0261 | 0 | 16 | -0.834919 | PTS system transporter subunit IIC | |
SPCG_0262 | -1 | 14 | -0.266736 | formate acetyltransferase | |
SPCG_0263 | -1 | 11 | 1.352030 | fructose-6-phosphate aldolase | |
SPCG_0264 | -1 | 12 | 2.690722 | glycerol dehydrogenase | |
SPCG_0265 | -2 | 14 | 3.452183 | leucyl-tRNA synthetase | |
SPCG_0266 | 1 | 22 | 2.710005 | acetyltransferase | |
SPCG_0267 | 2 | 21 | 2.045596 | acetyltransferase | |
SPCG_0268 | 2 | 19 | 2.358238 | hypothetical protein | |
SPCG_0269 | 0 | 14 | 2.549482 | Holliday junction DNA helicase RuvB | |
SPCG_0270 | 0 | 14 | 2.171158 | hypothetical protein | |
SPCG_0271 | 0 | 16 | 3.066434 | undecaprenyl pyrophosphate synthase | |
SPCG_0272 | 0 | 15 | 3.393081 | phosphatidate cytidylyltransferase | |
SPCG_0273 | -2 | 16 | 3.350148 | eep protein | |
SPCG_0274 | -2 | 16 | 3.021681 | prolyl-tRNA synthetase | |
SPCG_0275 | -2 | 17 | 2.901660 | glycosyl hydrolase family protein | |
SPCG_0276 | -2 | 19 | 2.780758 | glucosamine--fructose-6-phosphate | |
SPCG_0277 | -2 | 20 | 2.292715 | oxidoreductase | |
SPCG_0278 | 0 | 27 | 1.865551 | alkaline amylopullulanase | |
SPCG_0279 | 7 | 39 | 1.596956 | IS1380-Spn1 transposase | |
SPCG_0280 | 2 | 24 | 3.485991 | hypothetical protein | |
SPCG_0281 | 2 | 24 | 3.556767 | hypothetical protein | |
SPCG_0282 | 2 | 23 | 3.397949 | 30S ribosomal protein S12 | |
SPCG_0283 | 1 | 22 | 3.280402 | 30S ribosomal protein S7 | |
SPCG_0284 | 0 | 21 | 3.602487 | elongation factor G | |
SPCG_0285 | -2 | 18 | 3.776211 | DNA polymerase III PolC | |
SPCG_0286 | -1 | 18 | 3.142958 | hypothetical protein | |
SPCG_0287 | 0 | 20 | 3.366604 | hypothetical protein | |
SPCG_0288 | -2 | 23 | 3.337697 | hypothetical protein | |
SPCG_0289 | -2 | 25 | 4.176309 | aminopeptidase PepS | |
SPCG_0290 | -1 | 24 | 3.337906 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0253 | PF05272 | 29 | 0.011 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0267 | SACTRNSFRASE | 42 | 8e-08 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0284 | TCRTETOQM | 619 | 0.0 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family |
6 | SPCG_0301 | SPCG_0316 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0301 | -2 | 18 | 3.119746 | hypothetical protein | |
SPCG_0302 | -1 | 20 | 3.747513 | dihydropteroate synthase | |
SPCG_0303 | -1 | 17 | 2.921658 | dihydrofolate synthetase | |
SPCG_0304 | 2 | 21 | 1.835711 | GTP cyclohydrolase I | |
SPCG_0305 | 2 | 22 | 0.781906 | bifunctional folate synthesis protein | |
SPCG_0306 | 3 | 30 | -2.520363 | hypothetical protein | |
SPCG_0307 | 1 | 28 | -3.579628 | hypothetical protein | |
SPCG_0308 | 3 | 29 | -3.695470 | 50S ribosomal protein L13 | |
SPCG_0309 | 0 | 28 | -4.356020 | 30S ribosomal protein S9 | |
SPCG_0310 | -2 | 26 | -7.041753 | hypothetical protein | |
SPCG_0311 | 0 | 27 | -6.953861 | hypothetical protein | |
SPCG_0312 | -2 | 27 | -7.324003 | 6-phospho-beta-glucosidase | |
SPCG_0313 | 0 | 29 | -6.784763 | hypothetical protein | |
SPCG_0314 | -1 | 29 | -6.589679 | PTS system cellobiose transporter subunit IIB | |
SPCG_0315 | -1 | 26 | -5.944686 | PTS system transporter subunit IIB | |
SPCG_0316 | 1 | 24 | -3.995751 | cellobiose phosphotransferase system IIA |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0311 | TYPE4SSCAGA | 29 | 0.005 | Type IV secretion system CagA exotoxin signature. | |
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. |
7 | SPCG_0346 | SPCG_0357 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0346 | 1 | 21 | -4.575563 | capsular polysaccharide biosynthesis protein | |
SPCG_0347 | 2 | 26 | -6.231676 | capsular polysaccharide biosynthesis protein | |
SPCG_0348 | 3 | 30 | -8.349591 | capsular polysaccharide biosynthesis protein | |
SPCG_0349 | 2 | 31 | -9.377404 | capsular polysaccharide biosynthesis protein | |
SPCG_0350 | 1 | 31 | -9.926491 | glucosyl-1-phosphate transferase | |
SPCG_0351 | 2 | 34 | -10.440611 | glycosyltransferase activity enhancer | |
SPCG_0352 | 2 | 34 | -10.545387 | ss-1,4-galactosyltransferase | |
SPCG_0353 | 2 | 34 | -10.257004 | polysaccharide polymerase | |
SPCG_0354 | 2 | 34 | -9.466423 | ss-1,3-N-acetylglucosaminyltransferase | |
SPCG_0355 | 0 | 28 | -6.430985 | ss-1,4-galactosyltransferase | |
SPCG_0356 | -1 | 24 | -5.554640 | capsular polysaccharide synthesis protein | |
SPCG_0357 | -1 | 20 | -4.479829 | transporter |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0356 | PF05704 | 252 | 1e-85 | Capsular polysaccharide synthesis protein | |
>PF05704#Capsular polysaccharide synthesis protein |
8 | SPCG_0376 | SPCG_0431 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0376 | 0 | 23 | 3.195770 | mevalonate kinase | |
SPCG_0377 | 1 | 23 | 3.100846 | diphosphomevalonate decarboxylase | |
SPCG_0378 | 1 | 23 | 2.806488 | phosphomevalonate kinase | |
SPCG_0379 | 1 | 24 | 2.610903 | isopentenyl pyrophosphate isomerase | |
SPCG_0380 | 3 | 24 | 1.694090 | hypothetical protein | |
SPCG_0381 | 2 | 20 | 1.682503 | sensor histidine kinase | |
SPCG_0382 | 1 | 14 | -1.502880 | DNA-binding response regulator | |
SPCG_0383 | 3 | 20 | -3.368713 | hypothetical protein | |
SPCG_0384 | 6 | 19 | -2.263938 | DNA alkylation repair enzyme, truncation | |
SPCG_0385 | 7 | 21 | -3.170507 | DNA alkylation repair enzyme, truncation | |
SPCG_0386 | 6 | 21 | -3.106149 | hypothetical protein | |
SPCG_0387 | 6 | 20 | -3.036994 | choline binding protein G | |
SPCG_0388 | 6 | 22 | -3.054288 | hypothetical protein | |
SPCG_0389 | 4 | 24 | -1.356846 | hypothetical protein | |
SPCG_0390 | 0 | 18 | -3.245421 | degenerate transposase | |
SPCG_0391 | 0 | 19 | -3.131045 | degenerate transposase | |
SPCG_0392 | -1 | 18 | -3.227365 | degenerate transposase | |
SPCG_0393 | -1 | 18 | -3.240472 | degenerate transposase | |
SPCG_0394 | -2 | 16 | -2.134762 | PTS system mannitol-specific transporter subunit | |
SPCG_0395 | -2 | 11 | -0.810283 | transcriptional regulator | |
SPCG_0396 | -3 | 18 | 0.946139 | PTS system mannitol-specific transporter subunit | |
SPCG_0397 | -2 | 20 | 1.795168 | mannitol-1-phosphate 5-dehydrogenase | |
SPCG_0398 | 0 | 23 | 2.671808 | hypothetical protein | |
SPCG_0399 | -1 | 23 | 2.896139 | trigger factor | |
SPCG_0400 | -1 | 24 | 3.991836 | helicase | |
SPCG_0401 | 0 | 25 | 4.031937 | signal peptidase I | |
SPCG_0402 | 0 | 21 | 4.308876 | ribonuclease HIII | |
SPCG_0403 | -1 | 20 | 4.125026 | hypothetical protein | |
SPCG_0404 | 0 | 20 | 4.082175 | hypothetical protein | |
SPCG_0405 | -2 | 17 | 4.243344 | mutS2 family protein | |
SPCG_0406 | 0 | 19 | 3.659091 | hypothetical protein | |
SPCG_0407 | -2 | 19 | 3.250221 | sodium:alanine symporter family protein | |
SPCG_0408 | -2 | 18 | 2.918512 | hypothetical protein | |
SPCG_0409 | -3 | 16 | 2.597348 | exfoliative toxin | |
SPCG_0410 | -2 | 16 | 2.748622 | seryl-tRNA synthetase | |
SPCG_0411 | -1 | 13 | 1.880317 | hypothetical protein | |
SPCG_0412 | -1 | 11 | 2.317104 | aspartate kinase | |
SPCG_0413 | 1 | 12 | 3.041490 | enoyl-CoA hydratase | |
SPCG_0414 | 1 | 14 | 2.663779 | MarR family transcriptional regulator | |
SPCG_0415 | 1 | 14 | 2.823391 | 3-oxoacyl-ACP synthase | |
SPCG_0416 | 0 | 15 | 2.841078 | acyl carrier protein | |
SPCG_0417 | -1 | 13 | 3.251075 | enoyl-(acyl-carrier-protein) reductase | |
SPCG_0418 | 0 | 13 | 2.997830 | acyl-carrier-protein S-malonyltransferase | |
SPCG_0419 | -1 | 13 | 2.673165 | 3-ketoacyl-ACP reductase | |
SPCG_0420 | -2 | 13 | 3.129521 | 3-oxoacyl-(acyl carrier protein) synthase II | |
SPCG_0421 | -1 | 15 | 3.060549 | acetyl-CoA carboxylase biotin carboxyl carrier | |
SPCG_0422 | -1 | 15 | 3.048567 | (3R)-hydroxymyristoyl-ACP dehydratase | |
SPCG_0423 | -1 | 14 | 2.909086 | acetyl-CoA carboxylase biotin carboxylase | |
SPCG_0424 | -1 | 18 | 2.713721 | acetyl-CoA carboxylase subunit beta | |
SPCG_0425 | 0 | 26 | 3.603857 | acetyl-CoA carboxylase subunit alpha | |
SPCG_0426 | 1 | 32 | 3.849828 | hypothetical protein | |
SPCG_0427 | 1 | 32 | 4.128669 | transcription antitermination protein NusB | |
SPCG_0428 | 0 | 29 | 4.590601 | hypothetical protein | |
SPCG_0429 | 0 | 28 | 4.288743 | elongation factor P | |
SPCG_0430 | -1 | 26 | 4.349817 | aspartyl/glutamyl-tRNA amidotransferase subunit | |
SPCG_0431 | 0 | 24 | 3.581808 | aspartyl/glutamyl-tRNA amidotransferase subunit |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0381 | PF06580 | 36 | 2e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0382 | HTHFIS | 65 | 1e-14 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0387 | V8PROTEASE | 74 | 3e-17 | V8 serine protease family signature. | |
>V8PROTEASE#V8 serine protease family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0419 | DHBDHDRGNASE | 127 | 8e-38 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0421 | RTXTOXIND | 27 | 0.023 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D |
9 | SPCG_0624 | SPCG_0635 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0624 | -3 | 17 | 3.866263 | glucokinase | |
SPCG_0625 | -1 | 21 | 3.498752 | thymidylate synthase | |
SPCG_0626 | 0 | 20 | 3.928996 | hypothetical protein | |
SPCG_0627 | -1 | 21 | 3.572455 | hypothetical protein | |
SPCG_0628 | -2 | 23 | 3.549422 | tRNA delta(2)-isopentenylpyrophosphate | |
SPCG_0629 | -2 | 23 | 2.946513 | GTP-binding protein HflX | |
SPCG_0630 | -1 | 21 | 2.263311 | hypothetical protein | |
SPCG_0631 | -3 | 21 | 2.044442 | ribonuclease Z | |
SPCG_0632 | 0 | 23 | 1.424518 | short chain dehydrogenase/reductase family | |
SPCG_0633 | 2 | 25 | 2.083777 | transcriptional regulator | |
SPCG_0634 | 2 | 26 | 1.169616 | hypothetical protein | |
SPCG_0635 | 2 | 27 | 1.690207 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0624 | PF03309 | 35 | 2e-04 | Bvg accessory factor | |
>PF03309#Bvg accessory factor | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0632 | DHBDHDRGNASE | 80 | 5e-20 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase |
10 | SPCG_0644 | SPCG_0652 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0644 | 0 | 16 | -4.579830 | undecaprenyldiphospho-muramoylpentapeptide | |
SPCG_0645 | 3 | 25 | -7.055255 | cell division protein DivIB | |
SPCG_0646 | 4 | 32 | -9.642499 | hypothetical protein | |
SPCG_0647 | 4 | 32 | -9.586963 | hypothetical protein | |
SPCG_0648 | 3 | 28 | -7.127731 | hypothetical protein | |
SPCG_0649 | 1 | 21 | -3.541787 | HesA/MoeB/ThiF family protein | |
SPCG_0650 | 2 | 23 | -2.832838 | ABC transporter ATP-binding protein | |
SPCG_0651 | 1 | 22 | -2.858857 | hypothetical protein | |
SPCG_0652 | 2 | 21 | -2.867122 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0645 | IGASERPTASE | 41 | 7e-06 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. |
11 | SPCG_0833 | SPCG_0879 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0833 | -1 | 14 | -3.230028 | hypothetical protein | |
SPCG_0834 | -2 | 17 | -4.300061 | hypothetical protein | |
SPCG_0835 | -2 | 21 | -5.717741 | type I restriction-modification system, M | |
SPCG_0836 | -2 | 25 | -6.750763 | type I restriction-modification system subunit | |
SPCG_0837 | -2 | 21 | -4.656543 | type I restriction-modification system subunit | |
SPCG_0838 | -2 | 15 | -3.208542 | hypothetical protein | |
SPCG_0839 | -2 | 15 | -2.952745 | hypothetical protein | |
SPCG_0840 | -2 | 15 | -2.547322 | phage integrase family integrase/recombinase | |
SPCG_0841 | -2 | 16 | -2.254038 | type I restriction-modification system subunit | |
SPCG_0842 | -2 | 15 | -1.987243 | type I restriction-modification system, R | |
SPCG_0843 | -2 | 15 | -2.370527 | IS1380-Spn1 transposase | |
SPCG_0844 | -1 | 23 | -4.785540 | hypothetical protein | |
SPCG_0845 | 2 | 26 | -5.179573 | degenerate transposase | |
SPCG_0846 | 3 | 26 | -5.040595 | hypothetical protein | |
SPCG_0847 | 3 | 27 | -5.499388 | hypothetical protein | |
SPCG_0848 | 3 | 29 | -5.270663 | phosphosugar-binding transcriptional regulator | |
SPCG_0849 | 4 | 29 | -4.705865 | N-acetylmannosamine-6-phosphate 2-epimerase | |
SPCG_0850 | 3 | 28 | -4.862685 | N-acetylneuraminate lyase | |
SPCG_0851 | 2 | 26 | -5.221075 | sodium:solute symporter family protein | |
SPCG_0852 | 1 | 28 | -6.484377 | hypothetical protein | |
SPCG_0853 | 1 | 28 | -5.889578 | neuraminidase | |
SPCG_0854 | -1 | 30 | -6.805877 | Gfo/Idh/MocA family oxidoreductase | |
SPCG_0855 | 1 | 34 | -8.508658 | ROK family protein | |
SPCG_0856 | 2 | 35 | -8.824609 | hypothetical protein | |
SPCG_0857 | 1 | 32 | -6.355155 | V-type ATP synthase subunit I | |
SPCG_0858 | 1 | 31 | -4.944532 | V-type ATP synthase subunit K | |
SPCG_0859 | 2 | 32 | -5.867856 | v-type sodium ATP synthase subunit E | |
SPCG_0860 | 2 | 28 | -5.097097 | v-type sodium ATP synthase subunit C | |
SPCG_0861 | 1 | 24 | -3.721185 | V-type ATP synthase subunit F | |
SPCG_0862 | 1 | 24 | -3.822003 | V-type ATP synthase subunit A | |
SPCG_0863 | 3 | 22 | -5.744880 | V-type ATP synthase subunit B | |
SPCG_0864 | 3 | 16 | -5.312595 | V-type ATP synthase subunit D | |
SPCG_0865 | -1 | 20 | -1.315386 | degenerate transposase | |
SPCG_0866 | -2 | 14 | -1.002527 | degenerate transposase | |
SPCG_0867 | -3 | 13 | -0.210597 | hypothetical protein | |
SPCG_0868 | -2 | 16 | 0.295532 | hypothetical protein | |
SPCG_0869 | -1 | 15 | 0.528421 | transcriptional repressor | |
SPCG_0870 | -2 | 14 | 0.338847 | x-prolyl-dipeptidyl aminopeptidase | |
SPCG_0871 | -2 | 15 | 0.017154 | DNA polymerase III DnaE | |
SPCG_0872 | 3 | 32 | 0.784235 | 6-phosphofructokinase | |
SPCG_0873 | 3 | 27 | -0.441515 | pyruvate kinase | |
SPCG_0874 | -2 | 19 | -2.212903 | hypothetical protein | |
SPCG_0875 | 2 | 20 | -3.376817 | hypothetical protein | |
SPCG_0876 | 1 | 19 | -3.013370 | hypothetical protein | |
SPCG_0877 | 1 | 19 | -1.563526 | hypothetical protein | |
SPCG_0878 | 0 | 19 | -1.719701 | IS1381 transposase protein A | |
SPCG_0879 | 3 | 21 | -4.930807 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0857 | PF06580 | 30 | 0.035 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0869 | ARGREPRESSOR | 115 | 9e-36 | Bacterial arginine repressor signature. | |
>ARGREPRESSOR#Bacterial arginine repressor signature. |
12 | SPCG_0906 | SPCG_0919 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0906 | 1 | 16 | 3.940159 | gamma-glutamyl kinase | |
SPCG_0907 | 2 | 17 | 3.782719 | gamma-glutamyl phosphate reductase | |
SPCG_0908 | 3 | 17 | 1.850248 | pyrroline-5-carboxylate reductase | |
SPCG_0909 | 3 | 19 | -0.083222 | thymidylate kinase | |
SPCG_0910 | 2 | 17 | -1.345578 | DNA polymerase III subunit delta' | |
SPCG_0911 | 0 | 17 | -2.101116 | DNA replication intiation control protein YabA | |
SPCG_0912 | -2 | 12 | -0.040280 | tetrapyrrole methylase family protein | |
SPCG_0913 | -2 | 15 | -0.073127 | hypothetical protein | |
SPCG_0914 | 0 | 18 | 1.277847 | hypothetical protein | |
SPCG_0915 | 1 | 21 | 3.080269 | IS1381 transposase protein B | |
SPCG_0916 | 2 | 21 | 3.375445 | IS1381 transposase protein A | |
SPCG_0917 | 1 | 21 | 4.115479 | tRNA (uracil-5-)-methyltransferase Gid | |
SPCG_0918 | 2 | 21 | 3.698257 | uridylate kinase | |
SPCG_0919 | 2 | 22 | 3.123659 | ribosome recycling factor |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0906 | CARBMTKINASE | 49 | 1e-08 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. |
13 | SPCG_0963 | SPCG_0993 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0963 | 2 | 17 | -1.770661 | mutT/nudix family protein | |
SPCG_0964 | 1 | 15 | -2.325530 | hypothetical protein | |
SPCG_0965 | 1 | 14 | -2.090191 | 5'-methylthioadenosine/S-adenosylhomocysteine | |
SPCG_0966 | 2 | 15 | -2.539220 | hypothetical protein | |
SPCG_0967 | 3 | 18 | -1.335581 | DNA polymerase III subunit epsilon | |
SPCG_0968 | 3 | 17 | -1.981485 | hypothetical protein | |
SPCG_0969 | 4 | 19 | -0.432955 | IS630-Spn1 transposase | |
SPCG_0970 | 3 | 16 | 0.389847 | hypothetical protein | |
SPCG_0971 | 3 | 14 | 0.022362 | hypothetical protein | |
SPCG_0972 | 0 | 11 | 0.336882 | hypothetical protein | |
SPCG_0973 | -1 | 14 | -1.385691 | cytochrome c-type biogenesis protein CcdA | |
SPCG_0974 | -1 | 14 | -1.217855 | thioredoxin | |
SPCG_0975 | 0 | 14 | -1.074247 | amino acid permease family protein | |
SPCG_0976 | 0 | 15 | -1.445558 | adhesion lipoprotein | |
SPCG_0977 | 0 | 15 | -1.408243 | hypothetical protein | |
SPCG_0978 | -1 | 23 | -3.206065 | hypothetical protein | |
SPCG_0979 | 1 | 19 | 0.015836 | hypothetical protein | |
SPCG_0980 | 0 | 13 | -0.526482 | histidine triad protein E , truncation | |
SPCG_0981 | -1 | 14 | -0.805296 | hypothetical protein | |
SPCG_0982 | -1 | 14 | -1.384918 | hypothetical protein | |
SPCG_0983 | -2 | 14 | -1.439518 | hypothetical protein | |
SPCG_0984 | -3 | 14 | -1.377925 | peptidase T | |
SPCG_0985 | -1 | 18 | -3.738817 | ferrochelatase | |
SPCG_0986 | 0 | 19 | -4.152137 | hypothetical protein | |
SPCG_0987 | 1 | 17 | -3.729149 | degenerate transposase | |
SPCG_0988 | -1 | 14 | -1.785665 | degenerate transposase | |
SPCG_0989 | -1 | 14 | -0.533096 | large conductance mechanosensitive channel | |
SPCG_0990 | -1 | 15 | 1.008867 | gtrA family protein | |
SPCG_0991 | -1 | 17 | 2.126981 | hypothetical protein | |
SPCG_0992 | 0 | 16 | 3.015193 | *hypothetical protein | |
SPCG_0993 | 1 | 18 | 3.552776 | aspartate-semialdehyde dehydrogenase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0974 | ADHESNFAMILY | 27 | 0.046 | Adhesin family signature. | |
>ADHESNFAMILY#Adhesin family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0976 | ADHESNFAMILY | 228 | 1e-75 | Adhesin family signature. | |
>ADHESNFAMILY#Adhesin family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0977 | PRTACTNFAMLY | 32 | 0.013 | Pertactin virulence factor family signature. | |
>PRTACTNFAMLY#Pertactin virulence factor family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0989 | MECHCHANNEL | 93 | 1e-27 | Bacterial mechano-sensitive ion channel signature. | |
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0991 | ACRIFLAVINRP | 30 | 0.008 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. |
14 | SPCG_1005 | SPCG_1034 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1005 | 0 | 16 | -3.549703 | hypothetical protein | |
SPCG_1006 | 2 | 25 | -5.099496 | hypothetical protein | |
SPCG_1007 | 3 | 29 | -6.035742 | RNA methyltransferase | |
SPCG_1008 | 10 | 44 | -8.507345 | hypothetical protein | |
SPCG_1009 | 9 | 45 | -8.859833 | iron-compound ABC transporter iron | |
SPCG_1010 | 8 | 45 | -8.972001 | hypothetical protein | |
SPCG_1011 | 8 | 45 | -10.327001 | iron-compound ABC transporter permease | |
SPCG_1012 | 7 | 45 | -11.138565 | iron-compound ABC transporter permease | |
SPCG_1013 | 8 | 46 | -11.104415 | iron-compound ABC transporter ATP-binding | |
SPCG_1014 | 8 | 50 | -11.883004 | hypothetical protein | |
SPCG_1015 | 5 | 39 | -9.731638 | hypothetical protein | |
SPCG_1016 | 5 | 34 | -9.173124 | hypothetical protein | |
SPCG_1017 | 4 | 31 | -7.587775 | hypothetical protein | |
SPCG_1018 | 4 | 32 | -7.074634 | phage-associated protein | |
SPCG_1019 | 1 | 25 | -5.336420 | hypothetical protein | |
SPCG_1020 | 1 | 22 | -5.108623 | resolvase family site-specific recombinase | |
SPCG_1021 | 2 | 16 | -3.109208 | hypothetical protein | |
SPCG_1022 | 1 | 18 | -2.958001 | hypothetical protein | |
SPCG_1023 | 0 | 18 | -3.209457 | hypothetical protein | |
SPCG_1024 | 1 | 19 | -3.285701 | hydrolase | |
SPCG_1025 | 0 | 20 | -4.103556 | hypothetical protein | |
SPCG_1026 | 0 | 25 | -5.872049 | neopullulanase | |
SPCG_1027 | 1 | 32 | -8.953205 | hypothetical protein | |
SPCG_1028 | 1 | 28 | -8.699738 | hypothetical protein | |
SPCG_1029 | 2 | 26 | -8.055529 | transcriptional regulator | |
SPCG_1030 | 1 | 21 | -7.643669 | hypothetical protein | |
SPCG_1031 | 2 | 17 | -7.293765 | phosphoesterase | |
SPCG_1032 | 2 | 15 | -5.366559 | hypothetical protein | |
SPCG_1033 | 2 | 17 | -4.281009 | Tn5252, ORF 10 protein | |
SPCG_1034 | 0 | 16 | -4.478328 | Tn5252, ORF 9 protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1005 | THERMOLYSIN | 29 | 0.033 | Thermolysin metalloprotease (M4) family signature. | |
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1009 | FERRIBNDNGPP | 60 | 2e-12 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1020 | FLGHOOKAP1 | 35 | 9e-04 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1034 | PF01540 | 28 | 0.013 | Adhesin lipoprotein | |
>PF01540#Adhesin lipoprotein |
15 | SPCG_1081 | SPCG_1091 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1081 | 2 | 19 | 0.515216 | L-lactate dehydrogenase | |
SPCG_1082 | -1 | 13 | 0.429913 | DNA gyrase subunit A | |
SPCG_1083 | -3 | 15 | -6.553419 | hypothetical protein | |
SPCG_1084 | -2 | 14 | -5.096737 | FNT family protein | |
SPCG_1085 | -2 | 16 | -5.710415 | O-acetylhomoserine sulfhydrylase, truncation | |
SPCG_1086 | -2 | 15 | -5.480484 | O-acetylhomoserine sulfhydrylase, truncation | |
SPCG_1087 | -1 | 17 | -5.840659 | hypothetical protein | |
SPCG_1088 | 0 | 19 | -5.310450 | hypothetical protein | |
SPCG_1089 | -1 | 24 | 3.026007 | tRNA pseudouridine synthase B | |
SPCG_1090 | -2 | 22 | 2.861914 | hypothetical protein | |
SPCG_1091 | -2 | 24 | 3.394256 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1087 | RTXTOXIND | 34 | 7e-04 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D |
16 | SPCG_1102 | SPCG_1127 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1102 | 2 | 25 | -0.527744 | hypothetical protein | |
SPCG_1103 | 2 | 29 | -0.209156 | IS1381 transposase protein B | |
SPCG_1104 | 1 | 25 | -0.956339 | galactose mutarotase | |
SPCG_1105 | 1 | 25 | -0.541685 | galactose-6-phosphate isomerase subunit LacA | |
SPCG_1106 | -1 | 20 | -2.130043 | galactose-6-phosphate isomerase subunit LacB | |
SPCG_1107 | -1 | 18 | -1.862834 | tagatose-6-phosphate kinase | |
SPCG_1108 | -1 | 19 | -2.653951 | tagatose 1,6-diphosphate aldolase | |
SPCG_1109 | -2 | 18 | -3.680723 | transcription antiterminator LacT | |
SPCG_1110 | -2 | 18 | -3.352420 | PTS system lactose-specific transporter subunit | |
SPCG_1111 | -2 | 15 | -3.574444 | PTS system lactose-specific transporter subunit | |
SPCG_1112 | 0 | 18 | -2.050577 | 6-phospho-beta-galactosidase | |
SPCG_1113 | 1 | 25 | -1.154246 | hypothetical protein | |
SPCG_1114 | 1 | 26 | -0.724416 | lactose phosphotransferase system repressor | |
SPCG_1115 | 1 | 31 | 0.175234 | degenerate transposase | |
SPCG_1116 | 2 | 34 | 1.252052 | degenerate transposase | |
SPCG_1117 | 0 | 25 | 1.357368 | ribonucleotide-diphosphate reductase subunit | |
SPCG_1118 | 0 | 23 | 0.850751 | ribonucleotide-diphosphate reductase subunit | |
SPCG_1119 | 0 | 18 | 0.366838 | nrdH-redoxin | |
SPCG_1120 | -2 | 17 | -0.790153 | phosphocarrier protein HPr | |
SPCG_1121 | -2 | 13 | -0.640153 | phosphoenolpyruvate-protein phosphotransferase | |
SPCG_1122 | 0 | 16 | -3.388995 | hypothetical protein | |
SPCG_1123 | 2 | 22 | -5.039446 | hypothetical protein | |
SPCG_1124 | 2 | 20 | -3.329478 | degenerate transposase | |
SPCG_1125 | 0 | 14 | -1.334448 | hypothetical protein | |
SPCG_1126 | 1 | 13 | 0.700894 | HAD superfamily hydrolase | |
SPCG_1127 | 2 | 14 | 0.257570 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1102 | BCTERIALGSPF | 26 | 0.026 | Bacterial general secretion pathway protein F signa... | |
>BCTERIALGSPF#Bacterial general secretion pathway protein F | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1107 | BINARYTOXINA | 28 | 0.037 | Clostridial binary toxin A signature. | |
>BINARYTOXINA#Clostridial binary toxin A signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1115 | PREPILNPTASE | 30 | 0.004 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1121 | PHPHTRNFRASE | 813 | 0.0 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1122 | TONBPROTEIN | 39 | 6e-05 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. |
17 | SPCG_1212 | SPCG_1239 | Y ![]() | N | Y | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1212 | -1 | 12 | -3.687602 | phosphoenolpyruvate carboxylase | |
SPCG_1213 | -2 | 21 | -5.075281 | cell division protein FtsW | |
SPCG_1214 | -1 | 25 | -6.237657 | IS1381 transposase protein A, truncation | |
SPCG_1215 | 0 | 22 | -5.821037 | hypothetical protein | |
SPCG_1216 | -1 | 20 | -4.850991 | hypothetical protein | |
SPCG_1217 | -2 | 20 | -4.762302 | resolvase family site-specific recombinase | |
SPCG_1218 | -2 | 19 | -4.089899 | hypothetical protein | |
SPCG_1219 | -1 | 18 | -3.292375 | degenerate transposase | |
SPCG_1220 | -1 | 19 | -3.215543 | degenerate transposase | |
SPCG_1221 | 1 | 20 | -5.925428 | degenerate transposase | |
SPCG_1222 | 2 | 25 | -7.451373 | hypothetical protein | |
SPCG_1223 | 4 | 28 | -7.751733 | daunorubicin resistance transmembrane protein | |
SPCG_1224 | 4 | 25 | -6.668088 | hypothetical protein | |
SPCG_1225 | 1 | 23 | -5.891059 | hypothetical protein | |
SPCG_1226 | 1 | 20 | -5.998954 | hypothetical protein | |
SPCG_1227 | 0 | 16 | -4.155807 | methionyl-tRNA synthetase | |
SPCG_1228 | -2 | 12 | -2.942629 | chloramphenicol acetyltransferase | |
SPCG_1229 | -3 | 12 | -1.591379 | IS1239 transposase | |
SPCG_1230 | -1 | 13 | -1.599188 | DNA processing protein DprA | |
SPCG_1231 | -1 | 12 | -2.505900 | licC protein | |
SPCG_1232 | 0 | 12 | -2.817356 | licB protein | |
SPCG_1233 | 0 | 13 | -3.304226 | choline kinase | |
SPCG_1234 | -2 | 14 | -0.192913 | zinc-containing alcohol dehydrogenase | |
SPCG_1235 | -1 | 16 | 0.330090 | 2-C-methyl-D-erythritol 4-phosphate | |
SPCG_1236 | -2 | 15 | 0.742147 | polysaccharide biosynthesis protein | |
SPCG_1237 | 0 | 16 | 1.658384 | licD1 protein | |
SPCG_1238 | 1 | 17 | 2.786942 | licD2 protein | |
SPCG_1239 | 1 | 18 | 3.124673 | carbamoyl phosphate synthase large subunit |
18 | SPCG_1253 | SPCG_1259 | Y ![]() | N | N | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1253 | -1 | 17 | -4.545541 | hypothetical protein | |
SPCG_1254 | 0 | 22 | -6.725438 | Cof family protein | |
SPCG_1255 | 0 | 26 | -7.818058 | hypothetical protein | |
SPCG_1256 | 1 | 25 | -6.196285 | choline binding protein PcpA | |
SPCG_1257 | 1 | 23 | -6.631941 | surface protein A | |
SPCG_1258 | 3 | 22 | -7.156865 | rgg protein | |
SPCG_1259 | 2 | 17 | -1.012270 | hypothetical protein |
19 | SPCG_1268 | SPCG_1390 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1268 | -2 | 17 | -6.558166 | hypothetical protein | |
SPCG_1269 | -2 | 23 | -8.507468 | hypothetical protein | |
SPCG_1270 | -2 | 24 | -8.778296 | hypothetical protein | |
SPCG_1271 | -1 | 26 | -9.662045 | hypothetical protein | |
SPCG_1272 | -1 | 26 | -9.785576 | glutamate dehydrogenase | |
SPCG_1273 | 1 | 32 | -12.004761 | glutamate dehydrogenase | |
SPCG_1274 | 2 | 33 | -11.204732 | site-specific recombinase | |
SPCG_1275 | 3 | 29 | -10.014799 | hypothetical protein | |
SPCG_1276 | 3 | 29 | -9.926083 | Tn5252, relaxase | |
SPCG_1277 | 3 | 28 | -8.994677 | Tn5252, ORF 9 protein | |
SPCG_1278 | 2 | 29 | -9.427709 | Tn5252, ORF 10 protein | |
SPCG_1279 | 1 | 30 | -9.982038 | hypothetical protein | |
SPCG_1280 | 1 | 31 | -9.950246 | DNA-dependent ATPase I and helicase II | |
SPCG_1281 | 0 | 33 | -10.819694 | hypothetical protein | |
SPCG_1282 | 0 | 33 | -11.058680 | hypothetical protein | |
SPCG_1283 | 1 | 34 | -11.815412 | hypothetical protein | |
SPCG_1284 | 0 | 35 | -11.540149 | hypothetical protein | |
SPCG_1285 | 1 | 33 | -10.675388 | hypothetical protein | |
SPCG_1286 | 0 | 35 | -11.458365 | phosphoserine phosphatase | |
SPCG_1287 | 2 | 35 | -11.658162 | hypothetical protein | |
SPCG_1288 | 3 | 35 | -11.598188 | hypothetical protein | |
SPCG_1289 | 1 | 32 | -11.215081 | hypothetical protein | |
SPCG_1290 | 0 | 29 | -9.705261 | hypothetical protein | |
SPCG_1291 | 0 | 30 | -9.517963 | replication initiation protein Rep(RC) | |
SPCG_1292 | 1 | 27 | -8.079564 | chloramphenicol acetyltransferase | |
SPCG_1293 | 1 | 28 | -7.567986 | hypothetical protein | |
SPCG_1294 | 2 | 27 | -6.679512 | hypothetical protein | |
SPCG_1295 | 4 | 29 | -5.584424 | hypothetical protein | |
SPCG_1296 | 4 | 28 | -5.984868 | transcriptional regulator | |
SPCG_1297 | 3 | 27 | -6.208387 | hypothetical protein | |
SPCG_1298 | 2 | 27 | -6.045405 | hypothetical protein | |
SPCG_1299 | 3 | 25 | -5.469966 | hypothetical protein | |
SPCG_1300 | 3 | 21 | -4.215073 | hypothetical protein | |
SPCG_1301 | 3 | 20 | -3.875226 | parvulin-like peptidyl-prolyl isomerase | |
SPCG_1302 | 3 | 21 | -3.883362 | hypothetical protein | |
SPCG_1303 | 3 | 20 | -3.021903 | hypothetical protein | |
SPCG_1304 | 3 | 19 | -2.947903 | hypothetical protein | |
SPCG_1305 | 2 | 18 | -3.057959 | SNF2 family protein | |
SPCG_1306 | 1 | 18 | -2.433405 | hypothetical protein | |
SPCG_1307 | 1 | 18 | -2.342910 | hypothetical protein | |
SPCG_1308 | 2 | 18 | -2.397676 | hypothetical protein | |
SPCG_1309 | 1 | 19 | -3.030385 | hypothetical protein | |
SPCG_1310 | 0 | 20 | -2.931703 | hypothetical protein | |
SPCG_1311 | 1 | 20 | -3.754552 | hypothetical protein | |
SPCG_1312 | 2 | 23 | -5.119622 | hypothetical protein | |
SPCG_1313 | 3 | 22 | -5.532943 | hypothetical protein | |
SPCG_1314 | 1 | 26 | -6.257124 | hypothetical protein | |
SPCG_1315 | -1 | 23 | -5.648177 | hypothetical protein | |
SPCG_1316 | -2 | 17 | -3.864430 | hypothetical protein | |
SPCG_1317 | 0 | 20 | -1.593374 | hypothetical protein | |
SPCG_1318 | 1 | 22 | -1.379422 | hypothetical protein | |
SPCG_1319 | 1 | 23 | -1.370734 | hypothetical protein | |
SPCG_1320 | 0 | 25 | -0.558074 | hypothetical protein | |
SPCG_1321 | 0 | 25 | -0.956569 | hypothetical protein | |
SPCG_1322 | 3 | 26 | -2.198276 | hypothetical protein | |
SPCG_1323 | 4 | 29 | -3.617793 | erythromycin ribosome methylase | |
SPCG_1324 | 2 | 23 | -4.052306 | streptothricin acetyltransferase | |
SPCG_1325 | 1 | 24 | -4.110777 | aminoglycoside phosphotransferase type III | |
SPCG_1326 | 0 | 24 | -5.334032 | omega2 protein | |
SPCG_1327 | 0 | 24 | -5.194330 | rRNA methylase | |
SPCG_1328 | 1 | 25 | -4.858248 | resolvase | |
SPCG_1329 | 1 | 22 | -4.488437 | transposase | |
SPCG_1330 | 2 | 21 | -3.044926 | hypothetical protein | |
SPCG_1331 | 1 | 22 | -3.777478 | hypothetical protein | |
SPCG_1332 | 0 | 21 | -3.846516 | hypothetical protein | |
SPCG_1333 | -1 | 20 | -4.395462 | hypothetical protein | |
SPCG_1334 | -1 | 22 | -3.345346 | hypothetical protein | |
SPCG_1335 | 1 | 26 | -3.764981 | hypothetical protein | |
SPCG_1336 | 2 | 26 | -3.969202 | hypothetical protein | |
SPCG_1337 | 3 | 27 | -4.027652 | hypothetical protein | |
SPCG_1338 | 1 | 27 | -3.753378 | hypothetical protein | |
SPCG_1339 | 2 | 26 | -2.371257 | type II DNA modification methyltransferase | |
SPCG_1340 | 3 | 20 | -0.558841 | replication initiator A, N-terminal | |
SPCG_1341 | 1 | 14 | 1.544598 | hypothetical protein | |
SPCG_1342 | 1 | 15 | 2.040067 | hypothetical protein | |
SPCG_1343 | 1 | 14 | 2.588623 | 50S ribosomal protein L7/L12 | |
SPCG_1344 | 0 | 15 | 3.110059 | 50S ribosomal protein L10 | |
SPCG_1345 | 0 | 14 | 3.022709 | chlorohydrolase | |
SPCG_1346 | 0 | 15 | 2.728357 | ABC transporter ATP-binding protein/permease | |
SPCG_1347 | 0 | 13 | 1.191276 | ABC transporter ATP-binding protein/permease | |
SPCG_1348 | -1 | 13 | -0.482439 | bifunctional methionine sulfoxide reductase A/B | |
SPCG_1349 | -1 | 11 | -1.562393 | homoserine kinase | |
SPCG_1350 | -1 | 12 | -2.446096 | homoserine dehydrogenase | |
SPCG_1351 | 0 | 16 | -2.959706 | adaptor protein | |
SPCG_1352 | -1 | 17 | -3.346828 | hypothetical protein | |
SPCG_1353 | 0 | 17 | -1.655962 | hypothetical protein | |
SPCG_1354 | 0 | 18 | -0.283327 | glycosyl transferase family protein | |
SPCG_1355 | 0 | 16 | 0.596547 | group 1 glycosyl transferase | |
SPCG_1356 | -2 | 15 | 2.110828 | licD3 protein | |
SPCG_1357 | -2 | 15 | 2.063853 | hypothetical protein | |
SPCG_1358 | -2 | 14 | 2.577975 | psr protein | |
SPCG_1359 | -1 | 15 | 3.845069 | prephenate dehydratase | |
SPCG_1360 | -1 | 15 | 4.255092 | shikimate kinase | |
SPCG_1361 | -1 | 17 | 4.334525 | 3-phosphoshikimate 1-carboxyvinyltransferase | |
SPCG_1362 | -1 | 18 | 4.195631 | hypothetical protein | |
SPCG_1363 | -1 | 18 | 3.864998 | prephenate dehydrogenase | |
SPCG_1364 | 0 | 19 | 2.799282 | chorismate synthase | |
SPCG_1365 | 0 | 21 | 2.003273 | 3-dehydroquinate synthase | |
SPCG_1366 | -1 | 19 | 2.354770 | shikimate 5-dehydrogenase | |
SPCG_1367 | -1 | 16 | 2.780758 | 3-dehydroquinate dehydratase | |
SPCG_1368 | -1 | 16 | 2.568212 | hypothetical protein | |
SPCG_1369 | -1 | 16 | 2.650868 | hypothetical protein | |
SPCG_1370 | -2 | 19 | 3.349170 | ABC transporter ATP-binding protein | |
SPCG_1371 | -1 | 24 | 3.497184 | alpha-amylase | |
SPCG_1372 | -1 | 23 | 3.254025 | alanyl-tRNA synthetase | |
SPCG_1373 | -2 | 25 | 3.118355 | hypothetical protein | |
SPCG_1374 | -1 | 26 | 3.163351 | spermidine/putrescine ABC transporter | |
SPCG_1375 | -1 | 26 | 3.475182 | spermidine/putrescine ABC transporter permease | |
SPCG_1376 | 0 | 25 | 3.859365 | spermidine/putrescine ABC transporter permease | |
SPCG_1377 | -2 | 24 | 3.818497 | spermidine/putrescine ABC transporter | |
SPCG_1378 | -1 | 18 | 2.810228 | UDP-N-acetylenolpyruvoylglucosamine reductase | |
SPCG_1379 | -1 | 17 | 2.246324 | hypothetical protein | |
SPCG_1380 | -1 | 17 | 2.532702 | hypothetical protein | |
SPCG_1381 | -1 | 17 | 2.377090 | alpha-acetolactate decarboxylase | |
SPCG_1382 | -1 | 16 | 2.352498 | hypothetical protein | |
SPCG_1383 | -2 | 15 | 2.268637 | amino acid ABC transporter amino acid-binding | |
SPCG_1384 | -2 | 18 | 3.068593 | phosphate transport system regulatory protein | |
SPCG_1385 | -1 | 19 | 3.748842 | phosphate transporter ATP-binding protein | |
SPCG_1386 | 1 | 20 | 3.899688 | phosphate transporter ATP-binding protein | |
SPCG_1387 | 3 | 19 | 4.117568 | phosphate ABC transporter permease | |
SPCG_1388 | 2 | 22 | 3.337998 | phosphate ABC transporter permease | |
SPCG_1389 | 3 | 22 | 2.766419 | phosphate ABC transporter substrate-binding | |
SPCG_1390 | 2 | 23 | 3.129771 | NOL1/NOP2/sun family protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1290 | BCTERIALGSPC | 29 | 0.016 | Bacterial general secretion pathway protein C signa... | |
>BCTERIALGSPC#Bacterial general secretion pathway protein C | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1299 | PYOCINKILLER | 26 | 0.017 | Pyocin S killer protein signature. | |
>PYOCINKILLER#Pyocin S killer protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1308 | GPOSANCHOR | 30 | 0.035 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1324 | SACTRNSFRASE | 289 | e-103 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1328 | HTHTETR | 27 | 0.032 | TetR bacterial regulatory protein HTH signature. | |
>HTHTETR#TetR bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1345 | UREASE | 37 | 1e-04 | Urea amidohydrolase (urease) protein signature. | |
>UREASE#Urea amidohydrolase (urease) protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1351 | BACINVASINB | 28 | 0.038 | Salmonella/Shigella invasin protein B signature. | |
>BACINVASINB#Salmonella/Shigella invasin protein B signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1356 | INTIMIN | 30 | 0.012 | Intimin signature. | |
>INTIMIN#Intimin signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1374 | MYCMG045 | 45 | 3e-07 | Hypothetical mycoplasma lipoprotein (MG045) signature. | |
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1383 | ADHESNFAMILY | 30 | 0.008 | Adhesin family signature. | |
>ADHESNFAMILY#Adhesin family signature. |
20 | SPCG_1401 | SPCG_1439 | Y ![]() | N | Y | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1401 | -2 | 16 | 3.025403 | HPr kinase/phosphorylase | |
SPCG_1402 | -2 | 18 | 3.871434 | 30S ribosomal protein S21 | |
SPCG_1403 | -2 | 17 | 4.564569 | glucosamine-6-phosphate isomerase | |
SPCG_1404 | -2 | 18 | 3.954084 | S-adenosylmethionine--tRNA | |
SPCG_1405 | 0 | 15 | 1.470514 | choline binding protein | |
SPCG_1406 | 0 | 17 | 1.068914 | acetyltransferase | |
SPCG_1407 | 0 | 17 | 0.065132 | NAD synthetase | |
SPCG_1408 | 0 | 19 | -3.028444 | nicotinate phosphoribosyltransferase | |
SPCG_1409 | 0 | 19 | -6.437065 | hypothetical protein | |
SPCG_1410 | 1 | 23 | -6.753961 | hypothetical protein | |
SPCG_1411 | 0 | 19 | -1.203172 | hypothetical protein | |
SPCG_1412 | 0 | 19 | -1.228928 | hypothetical protein | |
SPCG_1413 | 1 | 19 | -0.748187 | hypothetical protein | |
SPCG_1414 | 1 | 17 | -3.604578 | U32 family peptidase | |
SPCG_1415 | -1 | 19 | -5.225931 | hypothetical protein | |
SPCG_1416 | -1 | 22 | -6.579609 | U32 family peptidase | |
SPCG_1417 | 3 | 34 | -10.202069 | hypothetical protein | |
SPCG_1418 | 3 | 35 | -9.658357 | hypothetical protein | |
SPCG_1419 | 4 | 35 | -9.535803 | type II DNA modification methyltransferase | |
SPCG_1420 | 5 | 34 | -8.681872 | hypothetical protein | |
SPCG_1421 | 5 | 35 | -9.038086 | AraC family transcriptional regulator | |
SPCG_1422 | 6 | 34 | -7.968285 | ABC transporter ATP-binding protein/permease | |
SPCG_1423 | 6 | 31 | -7.409064 | ABC transporter ATP-binding protein | |
SPCG_1424 | 6 | 29 | -6.377054 | hypothetical protein | |
SPCG_1425 | 4 | 28 | -5.589747 | hypothetical protein | |
SPCG_1426 | 4 | 25 | -4.633675 | ABC transporter ATP-binding protein | |
SPCG_1427 | 2 | 26 | 0.506783 | hypothetical protein | |
SPCG_1428 | 2 | 21 | 0.636898 | hypothetical protein | |
SPCG_1429 | -1 | 21 | 0.823917 | hypothetical protein | |
SPCG_1430 | -2 | 14 | 1.251268 | hypothetical protein | |
SPCG_1431 | -2 | 9 | 1.169389 | hypothetical protein | |
SPCG_1432 | -2 | 9 | 0.315333 | IS66 family Orf1 | |
SPCG_1433 | -2 | 9 | 0.427478 | GMP synthase | |
SPCG_1434 | 1 | 17 | 0.536776 | GntR family transcriptional regulator | |
SPCG_1435 | 2 | 19 | 0.353311 | membrane protein | |
SPCG_1436 | 3 | 20 | -0.212006 | hypothetical protein | |
SPCG_1437 | 4 | 22 | -0.280899 | cppA protein | |
SPCG_1438 | 4 | 21 | 1.346664 | platelet activating factor | |
SPCG_1439 | 3 | 19 | 2.119863 | cof family protein |
21 | SPCG_1448 | SPCG_1460 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1448 | 2 | 17 | 1.096338 | amino acid ABC transporter permease | |
SPCG_1449 | 4 | 20 | -3.993247 | hypothetical protein | |
SPCG_1450 | 4 | 21 | -4.611774 | methylated-DNA--protein-cysteine | |
SPCG_1451 | 3 | 19 | -4.488171 | acetyltransferase | |
SPCG_1452 | 1 | 15 | -3.505585 | hypothetical protein | |
SPCG_1453 | -1 | 16 | -2.758305 | hemolysin | |
SPCG_1454 | -3 | 16 | -2.124171 | hypothetical protein | |
SPCG_1455 | -2 | 18 | 0.387180 | ABC transporter ATP-binding protein | |
SPCG_1456 | 0 | 27 | 1.814332 | glutamine amidotransferase subunit PdxT | |
SPCG_1457 | 1 | 31 | 1.695094 | pyridoxal biosynthesis lyase PdxS | |
SPCG_1458 | 3 | 30 | 1.278697 | NADH oxidase | |
SPCG_1459 | 1 | 26 | 1.863775 | thiamine biosynthesis protein ApbE | |
SPCG_1460 | 2 | 25 | 0.558117 | oxidoreductase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1448 | HTHFIS | 29 | 0.027 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1451 | SACTRNSFRASE | 30 | 0.003 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1458 | NUCEPIMERASE | 34 | 0.001 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. |
22 | SPCG_1469 | SPCG_1480 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1469 | 2 | 31 | 0.967950 | Gfo/Idh/MocA family oxidoreductase | |
SPCG_1470 | 3 | 35 | 1.671990 | DEAD/DEAH box helicase | |
SPCG_1471 | 4 | 43 | 2.051223 | hypothetical protein | |
SPCG_1472 | 3 | 35 | 1.073917 | hypothetical protein | |
SPCG_1473 | 3 | 35 | 0.933542 | hypothetical protein | |
SPCG_1474 | 3 | 32 | 0.953488 | elongation factor Tu | |
SPCG_1475 | 3 | 19 | -0.425025 | glycerol uptake facilitator protein | |
SPCG_1476 | 2 | 25 | 0.256345 | cell wall surface anchor family protein | |
SPCG_1477 | 2 | 22 | -0.181454 | hypothetical protein | |
SPCG_1478 | 2 | 25 | 0.298952 | hypothetical protein | |
SPCG_1479 | 3 | 27 | 0.484156 | transposase, IS630-Spn1 related, Orf2 | |
SPCG_1480 | 2 | 23 | 0.029581 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1474 | TCRTETOQM | 81 | 2e-18 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family |
23 | SPCG_1490 | SPCG_1504 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1490 | 3 | 23 | 2.503019 | hypothetical protein | |
SPCG_1491 | 2 | 25 | 1.970624 | F0F1 ATP synthase subunit epsilon | |
SPCG_1492 | 1 | 23 | 1.095228 | F0F1 ATP synthase subunit beta | |
SPCG_1493 | 1 | 18 | -0.333330 | F0F1 ATP synthase subunit gamma | |
SPCG_1494 | -1 | 15 | -0.699702 | F0F1 ATP synthase subunit alpha | |
SPCG_1495 | 0 | 15 | -3.425461 | F0F1 ATP synthase subunit delta | |
SPCG_1496 | 0 | 15 | -2.772876 | F0F1 ATP synthase subunit B | |
SPCG_1497 | -1 | 16 | -2.081404 | F0F1 ATP synthase subunit A | |
SPCG_1498 | 1 | 14 | -0.630464 | F0F1 ATP synthase subunit C | |
SPCG_1499 | 1 | 14 | -0.240604 | IS1239 transposase | |
SPCG_1500 | 2 | 17 | -0.059811 | acetyltransferase | |
SPCG_1501 | 2 | 16 | 0.827928 | hypothetical protein | |
SPCG_1502 | 0 | 14 | 0.929957 | transcription elongation factor GreA | |
SPCG_1503 | 1 | 15 | 2.057616 | hypothetical protein | |
SPCG_1504 | 2 | 18 | 2.253550 | acetyltransferase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1500 | SACTRNSFRASE | 37 | 1e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1503 | PF03544 | 30 | 0.029 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1504 | SACTRNSFRASE | 32 | 7e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. |
24 | SPCG_1523 | SPCG_1551 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1523 | 3 | 21 | 2.165636 | hypothetical protein | |
SPCG_1524 | 2 | 21 | 1.907513 | cof family protein/peptidyl-prolyl cis-trans | |
SPCG_1525 | 1 | 22 | 3.517209 | 30S ribosomal protein S18 | |
SPCG_1526 | -1 | 17 | 3.106308 | single-stranded DNA-binding protein | |
SPCG_1527 | 0 | 17 | 3.013687 | 30S ribosomal protein S6 | |
SPCG_1528 | -1 | 15 | 3.168193 | asparaginyl-tRNA synthetase | |
SPCG_1529 | 1 | 11 | 2.757866 | hypothetical protein | |
SPCG_1530 | -2 | 15 | 2.823083 | aspartate aminotransferase | |
SPCG_1531 | -1 | 17 | 1.976488 | hypothetical protein | |
SPCG_1532 | -1 | 16 | 1.905728 | hypothetical protein | |
SPCG_1533 | -2 | 17 | 2.738590 | hypothetical protein | |
SPCG_1534 | -3 | 18 | 2.692208 | hypothetical protein | |
SPCG_1535 | -3 | 18 | 2.928711 | hypothetical protein | |
SPCG_1536 | -1 | 17 | 3.174110 | peptide deformylase | |
SPCG_1537 | -1 | 17 | 3.265714 | glutathione S-transferase | |
SPCG_1538 | -1 | 17 | 3.383766 | cation transporter E1-E2 family ATPase | |
SPCG_1539 | 1 | 19 | 2.693161 | cation efflux family protein | |
SPCG_1540 | 0 | 16 | 3.063249 | ABC transporter ATP-binding protein | |
SPCG_1541 | -2 | 15 | 2.339750 | tRNA CCA-pyrophosphorylase | |
SPCG_1542 | -1 | 15 | 1.479154 | dihydrodipicolinate reductase | |
SPCG_1543 | 1 | 15 | 1.465779 | degV family protein | |
SPCG_1544 | -1 | 14 | 2.161167 | hypothetical protein | |
SPCG_1545 | 0 | 14 | 2.998423 | phosphoglucosamine mutase | |
SPCG_1546 | 0 | 17 | 2.887057 | hypothetical protein | |
SPCG_1547 | 0 | 18 | 3.531460 | hypothetical protein | |
SPCG_1548 | 0 | 21 | 4.524327 | pyridine nucleotide-disulfide oxidoreductase | |
SPCG_1549 | 0 | 21 | 4.130525 | hypothetical protein | |
SPCG_1550 | 1 | 19 | 3.686441 | hypothetical protein | |
SPCG_1551 | 0 | 19 | 3.080558 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1530 | FLGPRINGFLGI | 29 | 0.028 | Flagellar P-ring protein signature. | |
>FLGPRINGFLGI#Flagellar P-ring protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1550 | FERRIBNDNGPP | 29 | 0.027 | Ferrichrome-binding periplasmic protein signature. | |
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. |
25 | SPCG_1587 | SPCG_1618 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1587 | 0 | 16 | 3.448329 | glycosyl transferase family protein | |
SPCG_1588 | 0 | 16 | 3.605146 | UDP-glucose 4-epimerase | |
SPCG_1589 | 2 | 16 | 0.134413 | hypothetical protein | |
SPCG_1590 | 2 | 18 | -2.495012 | oxidoreductase, DadA family protein | |
SPCG_1591 | 2 | 20 | -4.500343 | hypothetical protein | |
SPCG_1592 | 3 | 19 | -3.900728 | bcl-2 family protein | |
SPCG_1593 | 3 | 17 | -1.902370 | hypothetical protein | |
SPCG_1594 | 2 | 17 | -1.557996 | hypothetical protein | |
SPCG_1595 | 1 | 16 | -0.742356 | hypothetical protein | |
SPCG_1596 | 0 | 17 | 0.971880 | hypothetical protein | |
SPCG_1597 | 0 | 19 | 1.671810 | snf2 family protein | |
SPCG_1598 | -2 | 17 | 2.578968 | cation transporter E1-E2 family ATPase | |
SPCG_1599 | 1 | 23 | -1.318940 | acyltransferase family protein | |
SPCG_1600 | 1 | 23 | -2.273010 | cadmium resistance transporter | |
SPCG_1601 | 4 | 33 | 1.802958 | 30S ribosomal protein S15 | |
SPCG_1602 | 1 | 24 | 1.570495 | hypothetical protein | |
SPCG_1603 | 0 | 21 | 1.704148 | hypothetical protein | |
SPCG_1604 | -2 | 24 | 2.470124 | hypothetical protein | |
SPCG_1605 | -2 | 23 | 2.694327 | hypothetical protein | |
SPCG_1606 | -2 | 22 | 3.346780 | threonyl-tRNA synthetase | |
SPCG_1607 | 1 | 24 | 2.825319 | sensor histidine kinase | |
SPCG_1608 | 0 | 23 | 1.622673 | DNA-binding response regulator | |
SPCG_1609 | 0 | 22 | 1.587933 | hypothetical protein | |
SPCG_1610 | 0 | 21 | 0.821568 | rrf2 family protein | |
SPCG_1611 | -1 | 22 | 0.337026 | hypothetical protein | |
SPCG_1612 | -1 | 23 | -0.926083 | iron-dependent transcriptional regulator | |
SPCG_1613 | -1 | 21 | 1.166789 | IS1167, transposase | |
SPCG_1614 | -1 | 23 | 3.294181 | hypothetical protein | |
SPCG_1615 | -3 | 22 | 3.739242 | hypothetical protein | |
SPCG_1616 | -3 | 22 | 4.114536 | hypothetical protein | |
SPCG_1617 | -3 | 21 | 4.022102 | D-tyrosyl-tRNA(Tyr) deacylase | |
SPCG_1618 | -4 | 20 | 3.270342 | GTP pyrophosphokinase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1588 | NUCEPIMERASE | 181 | 5e-57 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1596 | TCRTETA | 30 | 0.014 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1608 | HTHFIS | 79 | 6e-19 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |
26 | SPCG_1650 | SPCG_1676 | Y ![]() | Y ![]() | N | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1650 | 3 | 19 | -1.177040 | hypothetical protein | |
SPCG_1651 | 2 | 26 | -0.580946 | hypothetical protein | |
SPCG_1652 | 2 | 23 | -1.459144 | hypothetical protein | |
SPCG_1653 | 1 | 22 | -0.734818 | hypothetical protein | |
SPCG_1654 | 0 | 22 | -0.487132 | sugar ABC transporter permease | |
SPCG_1655 | -1 | 20 | -2.539023 | sugar ABC transporter permease | |
SPCG_1656 | -1 | 23 | -2.976513 | sugar ABC transporter sugar-binding protein | |
SPCG_1657 | 0 | 24 | -3.610736 | PTS system transporter subunit IIBC | |
SPCG_1658 | -1 | 23 | -3.761453 | N-acetylmannosamine-6-phosphate 2-epimerase | |
SPCG_1659 | 0 | 25 | -4.553741 | Gfo/Idh/MocA family oxidoreductase | |
SPCG_1660 | -1 | 21 | -3.163057 | neuraminidase B | |
SPCG_1661 | -2 | 17 | -2.164159 | ABC transporter permease | |
SPCG_1662 | -1 | 16 | -1.316380 | ABC transporter permease | |
SPCG_1663 | -2 | 16 | -0.157009 | ABC transporter substrate-binding protein | |
SPCG_1664 | -1 | 17 | 2.450313 | hypothetical protein | |
SPCG_1665 | -1 | 18 | 3.340257 | sialidase A (neuraminidase A) | |
SPCG_1666 | 0 | 25 | 4.912435 | hypothetical protein | |
SPCG_1667 | -1 | 23 | 5.358306 | hypothetical protein | |
SPCG_1668 | 0 | 20 | 4.848518 | acetyl xylan esterase | |
SPCG_1669 | -2 | 16 | 4.268485 | ATP-dependent DNA helicase RecG | |
SPCG_1670 | -1 | 17 | 3.277162 | alanine racemase | |
SPCG_1671 | 0 | 19 | 1.672392 | 4'-phosphopantetheinyl transferase | |
SPCG_1672 | -1 | 17 | 0.338814 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
SPCG_1673 | -1 | 14 | -1.434434 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
SPCG_1674 | -1 | 13 | -2.221583 | preprotein translocase subunit SecA | |
SPCG_1675 | 2 | 20 | -6.730789 | hypothetical protein | |
SPCG_1676 | -1 | 13 | -3.973808 | ABC transporter ATP-binding protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1656 | MALTOSEBP | 30 | 0.026 | Maltose binding protein signature. | |
>MALTOSEBP#Maltose binding protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1657 | PREPILNPTASE | 32 | 0.003 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1663 | MALTOSEBP | 33 | 0.003 | Maltose binding protein signature. | |
>MALTOSEBP#Maltose binding protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1665 | GPOSANCHOR | 38 | 2e-04 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1670 | ALARACEMASE | 351 | e-122 | Alanine racemase signature. | |
>ALARACEMASE#Alanine racemase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1671 | ENTSNTHTASED | 27 | 0.017 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1674 | SECA | 1055 | 0.0 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1676 | PF05272 | 31 | 0.004 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein |
27 | SPCG_1696 | SPCG_1720 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1696 | -3 | 19 | 3.259746 | sucrose-6-phosphate hydrolase | |
SPCG_1697 | -2 | 20 | 3.446881 | sucrose operon repressor | |
SPCG_1698 | 0 | 23 | 3.438141 | 3-hydroxy-3-methylglutaryl-CoA reductase | |
SPCG_1699 | -1 | 20 | 1.539290 | hydroxymethylglutaryl-CoA synthase | |
SPCG_1700 | -3 | 18 | 2.559414 | hypothetical protein | |
SPCG_1701 | -3 | 16 | 2.645785 | IS1381 transposase protein B | |
SPCG_1702 | -3 | 17 | 3.233364 | IS1381 transposase protein A, truncation | |
SPCG_1703 | -2 | 17 | 3.752916 | hypothetical protein | |
SPCG_1704 | -2 | 18 | 4.271542 | hypothetical protein | |
SPCG_1705 | -1 | 18 | 4.622661 | serine/threonine protein kinase | |
SPCG_1706 | -1 | 16 | 4.618268 | phosphatase | |
SPCG_1707 | 0 | 17 | 4.943245 | rRNA methyltransferase RsmB | |
SPCG_1708 | 0 | 15 | 4.988463 | methionyl-tRNA formyltransferase | |
SPCG_1709 | 0 | 15 | 4.515261 | primosome assembly protein PriA | |
SPCG_1710 | 1 | 13 | 3.767516 | primosome assembly protein PriA | |
SPCG_1711 | -1 | 14 | 3.229342 | DNA-directed RNA polymerase subunit omega | |
SPCG_1712 | 0 | 18 | 3.705054 | guanylate kinase | |
SPCG_1713 | 0 | 20 | 3.753071 | hypothetical protein | |
SPCG_1714 | 0 | 22 | 2.162161 | hypothetical protein | |
SPCG_1715 | 0 | 24 | 2.971077 | hypothetical protein | |
SPCG_1716 | -1 | 25 | 3.902992 | hypothetical protein | |
SPCG_1717 | -2 | 24 | 2.960343 | hypothetical protein | |
SPCG_1718 | -2 | 21 | 3.051857 | iojap-like protein | |
SPCG_1719 | -2 | 21 | 2.872110 | isochorismatase family protein | |
SPCG_1720 | -1 | 24 | 3.545777 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1713 | RTXTOXIND | 42 | 5e-06 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1720 | ENTSNTHTASED | 28 | 0.019 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. |
28 | SPCG_1872 | SPCG_1883 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1872 | 1 | 22 | -3.331610 | alpha-galactosidase | |
SPCG_1873 | 0 | 19 | -3.387795 | msm operon regulatory protein | |
SPCG_1874 | 1 | 18 | -4.001357 | biotin--protein ligase | |
SPCG_1875 | 1 | 16 | -3.773506 | *******************RNA methyltransferase | |
SPCG_1876 | 0 | 13 | -1.681654 | aminoglycoside phosphotransferase | |
SPCG_1877 | 0 | 15 | -0.918637 | recombination regulator RecX | |
SPCG_1878 | 2 | 17 | 0.016900 | hypothetical protein | |
SPCG_1879 | 1 | 14 | 1.151847 | hypothetical protein | |
SPCG_1880 | 2 | 14 | 2.369723 | IS1167, transposase | |
SPCG_1881 | 3 | 17 | 3.966109 | chaperonin GroEL | |
SPCG_1882 | 1 | 17 | 3.946437 | co-chaperonin GroES | |
SPCG_1883 | 1 | 18 | 3.279053 | single-stranded DNA-binding protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1876 | CARBMTKINASE | 31 | 0.006 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. |
29 | SPCG_1899 | SPCG_1906 | Y ![]() | N | Y | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1899 | 3 | 19 | -1.104278 | hypothetical protein | |
SPCG_1900 | 2 | 19 | -2.080057 | hypothetical protein | |
SPCG_1901 | 0 | 22 | -2.815158 | hypothetical protein | |
SPCG_1902 | 1 | 24 | -4.258825 | degenerate transposase | |
SPCG_1903 | -1 | 22 | -4.484725 | degenerate transposase | |
SPCG_1904 | 1 | 26 | -5.225466 | hypothetical protein | |
SPCG_1905 | 3 | 29 | -6.059322 | hypothetical protein | |
SPCG_1906 | 4 | 33 | -6.780550 | hypothetical protein |
30 | SPCG_1915 | SPCG_1958 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1915 | 1 | 17 | -3.262310 | transcriptional regulator | |
SPCG_1916 | -1 | 14 | -2.314685 | acetyltransferase | |
SPCG_1917 | -1 | 14 | -2.341701 | hypothetical protein | |
SPCG_1918 | -2 | 13 | -2.164831 | hypothetical protein | |
SPCG_1919 | 0 | 16 | 1.829576 | transcriptional regulator PlcR | |
SPCG_1920 | 3 | 24 | 3.613946 | hypothetical protein | |
SPCG_1921 | 4 | 25 | 3.577540 | hypothetical protein | |
SPCG_1922 | 6 | 33 | 4.429698 | ABC transporter ATP-binding protein | |
SPCG_1923 | 5 | 30 | 4.062440 | nucleoside diphosphate kinase | |
SPCG_1924 | 4 | 29 | 4.059540 | DNA-directed RNA polymerase subunit beta' | |
SPCG_1925 | 2 | 21 | 3.607749 | hypothetical protein | |
SPCG_1926 | -1 | 16 | 2.432610 | hypothetical protein | |
SPCG_1927 | -3 | 17 | 2.403901 | *hypothetical protein | |
SPCG_1928 | -2 | 16 | 2.632196 | hypothetical protein | |
SPCG_1929 | -3 | 16 | 3.454342 | DNA-entry nuclease | |
SPCG_1930 | -2 | 14 | 3.026179 | UDP-N-acetylglucosamine | |
SPCG_1931 | -2 | 14 | 1.716366 | hypothetical protein | |
SPCG_1932 | -2 | 13 | 1.529993 | phosphopantetheine adenylyltransferase | |
SPCG_1933 | -1 | 13 | 1.785977 | type II DNA modification methyltransferase | |
SPCG_1934 | -2 | 15 | 1.973312 | asparagine synthetase AsnA | |
SPCG_1935 | -1 | 15 | 1.936863 | hypothetical protein | |
SPCG_1936 | -2 | 14 | 3.217786 | membrane protein | |
SPCG_1937 | -2 | 16 | 3.089537 | spoU rRNA methylase family protein | |
SPCG_1938 | -2 | 19 | 3.586946 | acylphosphatase | |
SPCG_1939 | -1 | 19 | 4.004370 | OxaA-like protein precursor | |
SPCG_1940 | -1 | 20 | 4.083328 | pyruvate formate-lyase-activating enzyme | |
SPCG_1941 | -2 | 20 | 4.053570 | diaminopimelate decarboxylase | |
SPCG_1942 | -2 | 19 | 3.849463 | pur operon repressor | |
SPCG_1943 | -3 | 22 | 4.621231 | cmp-binding-factor 1 | |
SPCG_1944 | -3 | 23 | 4.471716 | competence-induced protein Ccs50 | |
SPCG_1945 | -1 | 22 | 3.306290 | hypothetical protein | |
SPCG_1946 | -2 | 19 | 3.079034 | ribulose-phosphate 3-epimerase | |
SPCG_1947 | -2 | 18 | 3.067926 | ribosome-associated GTPase | |
SPCG_1948 | -1 | 17 | 1.054029 | dimethyladenosine transferase | |
SPCG_1949 | 1 | 17 | 0.654378 | hypothetical protein | |
SPCG_1950 | 0 | 18 | 1.403433 | ABC transporter ATP-binding protein | |
SPCG_1951 | 1 | 17 | 1.679387 | immunity protein | |
SPCG_1952 | 1 | 20 | 0.932664 | hypothetical protein | |
SPCG_1953 | 0 | 20 | 0.985479 | transcriptional regulator PlcR | |
SPCG_1954 | 0 | 17 | 4.166313 | primase-like protein | |
SPCG_1955 | -1 | 16 | 2.941061 | hydrolase | |
SPCG_1956 | -2 | 16 | 2.547402 | hypothetical protein | |
SPCG_1957 | -3 | 12 | 2.836972 | cell wall surface anchor family protein | |
SPCG_1958 | -1 | 17 | 3.579385 | 50S ribosomal protein L34 |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1916 | SACTRNSFRASE | 50 | 4e-10 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1921 | TYPE3IMSPROT | 31 | 0.014 | Type III secretion system inner membrane S protein ... | |
>TYPE3IMSPROT#Type III secretion system inner membrane S protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1932 | LPSBIOSNTHSS | 156 | 2e-51 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1939 | 60KDINNERMP | 117 | 1e-31 | 60kDa inner membrane protein signature. | |
>60KDINNERMP#60kDa inner membrane protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1946 | FLGHOOKAP1 | 28 | 0.036 | Flagellar hook-associated protein signature. | |
>FLGHOOKAP1#Flagellar hook-associated protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1957 | GPOSANCHOR | 35 | 4e-04 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. |
31 | SPCG_2038 | SPCG_2069 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_2038 | -1 | 19 | 3.314119 | hypothetical protein | |
SPCG_2039 | 0 | 20 | 3.282256 | glutamine amidotransferase, class-I | |
SPCG_2040 | -1 | 16 | 3.169162 | ABC transporter ATP-binding protein/permease | |
SPCG_2041 | -2 | 17 | 3.323097 | degenerate transposase | |
SPCG_2042 | -3 | 15 | 3.199396 | ABC transporter ATP-binding protein/permease | |
SPCG_2043 | -3 | 14 | 2.707746 | DNA mismatch repair protein MutS | |
SPCG_2044 | -2 | 13 | 1.074475 | transcriptional repressor | |
SPCG_2045 | -1 | 16 | 1.029634 | arginyl-tRNA synthetase | |
SPCG_2046 | 0 | 18 | 0.547193 | IS1381 transposase protein B | |
SPCG_2047 | 2 | 19 | 0.432064 | hypothetical protein | |
SPCG_2048 | 2 | 20 | 0.266823 | response regulator | |
SPCG_2049 | 2 | 21 | 0.067615 | sensor histidine kinase PnpS | |
SPCG_2050 | 2 | 21 | -0.592881 | phosphate ABC transporter substrate-binding | |
SPCG_2051 | 3 | 20 | -1.083364 | phosphate ABC transporter permease | |
SPCG_2052 | 1 | 18 | -0.524943 | phosphate ABC transporter permease | |
SPCG_2053 | -2 | 16 | 0.440338 | phosphate transporter ATP-binding protein | |
SPCG_2054 | -2 | 15 | 1.028723 | phosphate transport system regulatory protein | |
SPCG_2055 | -1 | 13 | 1.311218 | degenerate transposase | |
SPCG_2056 | -3 | 13 | 2.826452 | transcriptional regulator | |
SPCG_2057 | -3 | 14 | 4.143847 | NAD(P)H-dependent glycerol-3-phosphate | |
SPCG_2058 | -3 | 13 | 3.674733 | UTP-glucose-1-phosphate uridylyltransferase | |
SPCG_2059 | -1 | 16 | 3.271181 | hypothetical protein | |
SPCG_2060 | -3 | 12 | 3.328201 | 5-formyltetrahydrofolate cyclo-ligase | |
SPCG_2061 | -3 | 11 | 2.021380 | M20/M25/M40 family peptidase | |
SPCG_2062 | -2 | 10 | 1.053729 | 2,3,4,5-tetrahydropyridine-2,6-carboxylate | |
SPCG_2063 | -2 | 10 | 0.631490 | hypothetical protein | |
SPCG_2064 | -2 | 10 | 0.219303 | penicillin-binding protein 1B | |
SPCG_2065 | 1 | 25 | -0.385514 | tyrosyl-tRNA synthetase | |
SPCG_2066 | 1 | 26 | -0.295105 | cation transporter E1-E2 family ATPase | |
SPCG_2067 | 3 | 39 | 0.519916 | hypothetical protein | |
SPCG_2068 | 2 | 40 | 0.832399 | rRNA (guanine-N1-)-methyltransferase | |
SPCG_2069 | 2 | 42 | 0.982647 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2044 | ARGREPRESSOR | 177 | 2e-60 | Bacterial arginine repressor signature. | |
>ARGREPRESSOR#Bacterial arginine repressor signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2048 | HTHFIS | 96 | 4e-25 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2049 | PF06580 | 43 | 1e-06 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2058 | PF04605 | 29 | 0.009 | Virulence-associated protein D (VapD) | |
>PF04605#Virulence-associated protein D (VapD) | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2063 | TCRTETA | 31 | 0.005 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. |
32 | SPCG_2096 | SPCG_2132 | Y ![]() | Y ![]() | Y | Pathogenicity Island (biased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_2096 | 0 | 26 | -4.617123 | transketolase, C-terminal subunit | |
SPCG_2097 | 0 | 25 | -4.405868 | transketolase | |
SPCG_2098 | 0 | 23 | -4.006284 | PTS system ascorbate-specific transporter | |
SPCG_2099 | -1 | 21 | -3.973042 | PTS system transporter subunit IIB | |
SPCG_2100 | 1 | 25 | -5.208943 | BglG family transcriptional regulator | |
SPCG_2101 | 3 | 29 | -4.043594 | hypothetical protein | |
SPCG_2102 | 5 | 34 | -5.497389 | hypothetical protein | |
SPCG_2103 | 5 | 32 | -5.656844 | 50S ribosomal protein L32 | |
SPCG_2104 | 4 | 29 | -5.714703 | 50S ribosomal protein L33 | |
SPCG_2105 | 3 | 29 | -5.725127 | choline binding protein PcpA | |
SPCG_2106 | -2 | 17 | 2.658391 | degenerate transposase | |
SPCG_2107 | 0 | 18 | 4.006861 | degenerate transposase | |
SPCG_2108 | 1 | 20 | 4.435437 | degenerate transposase | |
SPCG_2109 | 0 | 21 | 4.847034 | hypothetical protein | |
SPCG_2110 | 0 | 22 | 4.980831 | hypothetical protein | |
SPCG_2111 | 0 | 23 | 5.403042 | glycosyl hydrolase-like protein | |
SPCG_2112 | -1 | 21 | 5.390975 | ROK family protein | |
SPCG_2113 | -2 | 19 | 4.777983 | hypothetical protein | |
SPCG_2114 | -2 | 19 | 4.509065 | hypothetical protein | |
SPCG_2115 | -2 | 18 | 3.918754 | hypothetical protein | |
SPCG_2116 | -3 | 19 | 3.790521 | cell wall antigen | |
SPCG_2117 | -3 | 19 | 3.147538 | hypothetical protein | |
SPCG_2118 | -1 | 26 | 2.227871 | arginine deiminase | |
SPCG_2119 | -1 | 20 | 2.299821 | ornithine carbamoyltransferase | |
SPCG_2120 | -1 | 15 | 2.144487 | carbamate kinase | |
SPCG_2121 | 0 | 13 | 2.079328 | hypothetical protein | |
SPCG_2122 | 0 | 12 | 1.830912 | hypothetical protein | |
SPCG_2123 | 1 | 19 | -2.322122 | hypothetical protein | |
SPCG_2124 | 1 | 21 | -3.462184 | hypothetical protein | |
SPCG_2125 | 2 | 24 | -4.468643 | iron-containing alcohol dehydrogenase | |
SPCG_2126 | 3 | 26 | -5.179843 | L-fucose isomerase | |
SPCG_2127 | 3 | 29 | -6.646046 | L-fuculose phosphate aldolase | |
SPCG_2128 | 4 | 30 | -7.341120 | hypothetical protein | |
SPCG_2129 | 2 | 30 | -6.824980 | alpha-galactosidase | |
SPCG_2130 | 1 | 28 | -6.310111 | hypothetical protein | |
SPCG_2131 | 0 | 28 | -6.174134 | glycosyl hydrolase | |
SPCG_2132 | 0 | 19 | -4.444743 | sugar ABC transporter permease |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2100 | LPSBIOSNTHSS | 29 | 0.045 | Lipopolysaccharide core biosynthesis protein signat... | |
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2118 | ARGDEIMINASE | 552 | 0.0 | Bacterial arginine deiminase signature. | |
>ARGDEIMINASE#Bacterial arginine deiminase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2120 | CARBMTKINASE | 406 | e-146 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2121 | RTXTOXINA | 37 | 2e-04 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2123 | GPOSANCHOR | 33 | 1e-04 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. |
33 | SPCG_2145 | SPCG_2153 | Y ![]() | N | N | Genomic Island |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_2145 | 0 | 18 | -3.333820 | hypothetical protein | |
SPCG_2146 | 0 | 19 | -3.386609 | hypothetical protein | |
SPCG_2147 | -1 | 15 | -0.120527 | hypothetical protein | |
SPCG_2148 | -1 | 20 | 2.253234 | hypothetical protein | |
SPCG_2149 | 0 | 22 | 3.063922 | hypothetical protein | |
SPCG_2150 | -1 | 18 | 3.219411 | hypothetical protein | |
SPCG_2151 | -1 | 19 | 3.510898 | hypothetical protein | |
SPCG_2152 | -2 | 20 | 4.278757 | glycerol uptake facilitator protein | |
SPCG_2153 | -1 | 18 | 3.408187 | hypothetical protein |
34 | SPCG_0040 | SPCG_0053 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0040 | -1 | 28 | 3.758717 | acyl carrier protein | |
SPCG_0041 | -2 | 27 | 3.327110 | degenerate transposase | |
SPCG_0042 | -2 | 21 | 4.241244 | degenerate transposase | |
SPCG_0043 | -3 | 21 | 4.704545 | bacteriocin BlpU | |
SPCG_0044 | -2 | 22 | 4.873173 | competence factor transporting ATP-binding | |
SPCG_0045 | 0 | 21 | 5.137532 | competence factor transport protein ComB | |
SPCG_0046 | 1 | 20 | 4.269736 | phosphoribosylaminoimidazole-succinocarboxamide | |
SPCG_0047 | 1 | 21 | 5.030266 | phosphoribosylformylglycinamidine synthase | |
SPCG_0048 | 0 | 20 | 5.384824 | amidophosphoribosyltransferase | |
SPCG_0049 | 0 | 21 | 5.038979 | phosphoribosylaminoimidazole synthetase | |
SPCG_0050 | -1 | 20 | 5.040838 | phosphoribosylglycinamide formyltransferase | |
SPCG_0051 | 0 | 21 | 5.330959 | vanZ protein | |
SPCG_0052 | 1 | 24 | 6.607216 | bifunctional | |
SPCG_0053 | 1 | 25 | 6.576841 | phosphoribosylamine--glycine ligase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0040 | NUCEPIMERASE | 26 | 0.016 | Nucleotide sugar epimerase signature. | |
>NUCEPIMERASE#Nucleotide sugar epimerase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0044 | ANTHRAXTOXNA | 30 | 0.027 | Anthrax toxin LF subunit signature. | |
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0045 | RTXTOXIND | 60 | 7e-12 | Gram-negative bacterial RTX secretion protein D signat... | |
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0047 | FLGMRINGFLIF | 31 | 0.036 | Flagellar M-ring protein signature. | |
>FLGMRINGFLIF#Flagellar M-ring protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0049 | BINARYTOXINA | 30 | 0.014 | Clostridial binary toxin A signature. | |
>BINARYTOXINA#Clostridial binary toxin A signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0050 | SUBTILISIN | 33 | 7e-04 | Subtilisin serine protease family (S8) signature. | |
>SUBTILISIN#Subtilisin serine protease family (S8) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0053 | ARGDEIMINASE | 31 | 0.008 | Bacterial arginine deiminase signature. | |
>ARGDEIMINASE#Bacterial arginine deiminase signature. |
35 | SPCG_0558 | SPCG_0571 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0558 | 2 | 15 | 0.768147 | leucine-rich protein | |
SPCG_0559 | 1 | 15 | 0.804371 | hypothetical protein | |
SPCG_0560 | 3 | 20 | 2.052639 | transmembrane protein Vexp1 | |
SPCG_0561 | 0 | 21 | 2.907835 | ABC transporter ATP-binding protein | |
SPCG_0562 | 0 | 22 | 2.461724 | transmembrane protein Vexp3 | |
SPCG_0563 | 1 | 22 | 2.042823 | pep27 protein | |
SPCG_0564 | 1 | 23 | 2.326968 | DNA-binding response regulator VncR | |
SPCG_0565 | -1 | 23 | 2.240318 | sensor histidine kinase VncS | |
SPCG_0566 | -2 | 28 | 2.187195 | fructose-bisphosphate aldolase | |
SPCG_0567 | -2 | 19 | 2.347741 | oxidoreductase | |
SPCG_0568 | -2 | 17 | 3.063561 | amino acid ABC transporter permease | |
SPCG_0569 | -2 | 17 | 3.077532 | amino acid ABC transporter permease | |
SPCG_0570 | -2 | 16 | 2.025083 | amino acid ABC transporter amino acid-binding | |
SPCG_0571 | -2 | 15 | 0.816324 | amino acid ABC transporter ATP-binding protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0558 | HTHFIS | 34 | 4e-04 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0561 | PF05272 | 32 | 0.003 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0564 | HTHFIS | 85 | 2e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0565 | PF06580 | 31 | 0.012 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0567 | ACRIFLAVINRP | 31 | 0.008 | Acriflavin resistance protein family signature. | |
>ACRIFLAVINRP#Acriflavin resistance protein family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0571 | PF05272 | 29 | 0.018 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein |
36 | SPCG_0615 | SPCG_0624 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0615 | 1 | 11 | -0.916231 | thioredoxin | |
SPCG_0616 | 1 | 11 | -0.222847 | bifunctional methionine sulfoxide reductase A/B | |
SPCG_0617 | 1 | 14 | -0.453463 | DNA-binding response regulator | |
SPCG_0618 | 0 | 14 | -0.685462 | sensor histidine kinase | |
SPCG_0619 | -1 | 14 | -0.946109 | hypothetical protein | |
SPCG_0620 | -2 | 12 | -0.985057 | zinc metalloprotease ZmpB | |
SPCG_0621 | -2 | 13 | 2.258397 | chorismate binding protein | |
SPCG_0622 | -1 | 13 | 1.181374 | hypothetical protein | |
SPCG_0623 | -1 | 13 | 2.114946 | surface protein | |
SPCG_0624 | -3 | 17 | 3.866263 | glucokinase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0615 | adhesinb | 27 | 0.049 | Adhesin B signature. | |
>adhesinb#Adhesin B signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0617 | HTHFIS | 95 | 1e-24 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0618 | PF06580 | 199 | 3e-61 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0620 | IGASERPTASE | 72 | 2e-14 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0624 | PF03309 | 35 | 2e-04 | Bvg accessory factor | |
>PF03309#Bvg accessory factor |
37 | SPCG_0742 | SPCG_0748 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0742 | -1 | 10 | 1.491503 | 3-ketoacyl-ACP reductase | |
SPCG_0743 | -1 | 11 | 0.455273 | mutT/nudix family protein | |
SPCG_0744 | -2 | 10 | 0.226862 | PEP-utilizing enzyme family protein | |
SPCG_0745 | -2 | 12 | 0.768388 | hypothetical protein | |
SPCG_0746 | -1 | 10 | 0.398209 | aminopeptidase N | |
SPCG_0747 | 0 | 13 | -1.055024 | DNA-binding response regulator CiaR | |
SPCG_0748 | -1 | 12 | -0.479972 | sensor histidine kinase CiaH |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0742 | DHBDHDRGNASE | 97 | 2e-26 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig... | |
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0744 | PHPHTRNFRASE | 69 | 2e-15 | Phosphoenolpyruvate-protein phosphotransferase sign... | |
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0747 | HTHFIS | 86 | 2e-21 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0748 | PF06580 | 35 | 6e-04 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase |
38 | SPCG_0941 | SPCG_0949 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_0941 | -1 | 13 | 1.111165 | endo-beta-N-acetylglucosaminidase | |
SPCG_0942 | 0 | 20 | 2.894164 | adherence and virulence protein A | |
SPCG_0943 | -1 | 19 | 3.131494 | metalloprotease | |
SPCG_0944 | -1 | 19 | 3.027037 | diacylglycerol kinase | |
SPCG_0945 | -2 | 18 | 2.839534 | GTP-binding protein Era | |
SPCG_0946 | -2 | 18 | 2.774923 | formamidopyrimidine-DNA glycosylase | |
SPCG_0947 | -2 | 18 | 2.495505 | dephospho-CoA kinase | |
SPCG_0948 | -2 | 16 | 1.618038 | multi-drug resistance efflux pump | |
SPCG_0949 | -3 | 14 | 1.383215 | preprotein translocase subunit SecG |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0941 | FLGFLGJ | 30 | 0.024 | Flagellar protein FlgJ signature. | |
>FLGFLGJ#Flagellar protein FlgJ signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0942 | FbpA_PF05833 | 684 | 0.0 | Fibronectin-binding protein | |
>FbpA_PF05833#Fibronectin-binding protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0945 | TCRTETOQM | 36 | 1e-04 | Tetracycline resistance protein TetO/TetQ/TetM family ... | |
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0948 | TCRTETA | 106 | 2e-27 | Tetracycline resistance protein signature. | |
>TCRTETA#Tetracycline resistance protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_0949 | SECGEXPORT | 30 | 3e-04 | Protein-export SecG membrane protein signature. | |
>SECGEXPORT#Protein-export SecG membrane protein signature. |
39 | SPCG_1136 | SPCG_1148 | N ![]() | Y ![]() | Y | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1136 | -3 | 19 | 0.758332 | acetoin dehydrogenase complex, E3 component, | |
SPCG_1137 | -1 | 13 | -2.113500 | lipoate-protein ligase | |
SPCG_1138 | -1 | 20 | -4.124403 | site-specific tyrosine recombinase XerS | |
SPCG_1139 | -2 | 18 | -3.842493 | voltage-gated chloride channel family protein | |
SPCG_1140 | -2 | 13 | -2.874191 | ribonuclease HII | |
SPCG_1141 | -3 | 11 | -2.086560 | ribosomal biogenesis GTPase | |
SPCG_1142 | -2 | 11 | -2.266678 | zinc metalloprotease ZmpD | |
SPCG_1143 | -1 | 13 | -1.419808 | immunoglobulin A1 protease | |
SPCG_1144 | 3 | 20 | 2.019691 | hypothetical protein | |
SPCG_1145 | 1 | 20 | 2.192607 | exonuclease RexA | |
SPCG_1146 | 0 | 18 | 1.185674 | exonuclease RexB | |
SPCG_1147 | 1 | 31 | -0.597807 | IS630-Spn1, transposase Orf1 | |
SPCG_1148 | -1 | 27 | -0.034669 | degenerate transposase |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1136 | MICOLLPTASE | 34 | 0.002 | Microbial collagenase metalloprotease (M9) signature. | |
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1141 | PF05272 | 29 | 0.020 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1142 | TONBPROTEIN | 33 | 0.008 | Gram-negative bacterial tonB protein signature. | |
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1143 | PF03544 | 35 | 0.001 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1148 | PREPILNPTASE | 30 | 0.004 | Type IV prepilin cysteine protease (C20) family sig... | |
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family |
40 | SPCG_1500 | SPCG_1507 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1500 | 2 | 17 | -0.059811 | acetyltransferase | |
SPCG_1501 | 2 | 16 | 0.827928 | hypothetical protein | |
SPCG_1502 | 0 | 14 | 0.929957 | transcription elongation factor GreA | |
SPCG_1503 | 1 | 15 | 2.057616 | hypothetical protein | |
SPCG_1504 | 2 | 18 | 2.253550 | acetyltransferase | |
SPCG_1505 | 0 | 18 | 2.623206 | acetyltransferase | |
SPCG_1506 | -1 | 16 | 2.429043 | UDP-N-acetylmuramate--L-alanine ligase | |
SPCG_1507 | 1 | 18 | 2.128102 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1500 | SACTRNSFRASE | 37 | 1e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1503 | PF03544 | 30 | 0.029 | Gram-negative bacterial tonB protein | |
>PF03544#Gram-negative bacterial tonB protein | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1504 | SACTRNSFRASE | 32 | 7e-04 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1505 | SACTRNSFRASE | 36 | 2e-05 | Streptothricin acetyltransferase signature. | |
>SACTRNSFRASE#Streptothricin acetyltransferase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1506 | ACETATEKNASE | 32 | 0.006 | Acetate kinase family signature. | |
>ACETATEKNASE#Acetate kinase family signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1507 | BLACTAMASEA | 30 | 0.005 | Beta-lactamase class A signature. | |
>BLACTAMASEA#Beta-lactamase class A signature. |
41 | SPCG_1670 | SPCG_1676 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1670 | -1 | 17 | 3.277162 | alanine racemase | |
SPCG_1671 | 0 | 19 | 1.672392 | 4'-phosphopantetheinyl transferase | |
SPCG_1672 | -1 | 17 | 0.338814 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
SPCG_1673 | -1 | 14 | -1.434434 | phospho-2-dehydro-3-deoxyheptonate aldolase | |
SPCG_1674 | -1 | 13 | -2.221583 | preprotein translocase subunit SecA | |
SPCG_1675 | 2 | 20 | -6.730789 | hypothetical protein | |
SPCG_1676 | -1 | 13 | -3.973808 | ABC transporter ATP-binding protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1670 | ALARACEMASE | 351 | e-122 | Alanine racemase signature. | |
>ALARACEMASE#Alanine racemase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1671 | ENTSNTHTASED | 27 | 0.017 | Enterobactin synthetase component D signature. | |
>ENTSNTHTASED#Enterobactin synthetase component D signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1674 | SECA | 1055 | 0.0 | SecA protein signature. | |
>SECA#SecA protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1676 | PF05272 | 31 | 0.004 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein |
42 | SPCG_1964 | SPCG_1969 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_1964 | -3 | 13 | 0.487195 | catabolite control protein A | |
SPCG_1966 | -3 | 16 | 0.399478 | DNA-binding response regulator | |
SPCG_1967 | -1 | 17 | -0.778951 | sensor histidine kinase | |
SPCG_1968 | -1 | 14 | -1.876380 | hypothetical protein | |
SPCG_1969 | 1 | 16 | -2.880710 | ABC transporter ATP-binding protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1964 | MALTOSEBP | 29 | 0.025 | Maltose binding protein signature. | |
>MALTOSEBP#Maltose binding protein signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1966 | HTHFIS | 74 | 9e-18 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1967 | PF06580 | 39 | 1e-05 | Sensor histidine kinase | |
>PF06580#Sensor histidine kinase | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_1969 | PF05272 | 30 | 0.017 | Virulence-associated E family protein | |
>PF05272#Virulence-associated E family protein |
43 | SPCG_2118 | SPCG_2123 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_2118 | -1 | 26 | 2.227871 | arginine deiminase | |
SPCG_2119 | -1 | 20 | 2.299821 | ornithine carbamoyltransferase | |
SPCG_2120 | -1 | 15 | 2.144487 | carbamate kinase | |
SPCG_2121 | 0 | 13 | 2.079328 | hypothetical protein | |
SPCG_2122 | 0 | 12 | 1.830912 | hypothetical protein | |
SPCG_2123 | 1 | 19 | -2.322122 | hypothetical protein |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2118 | ARGDEIMINASE | 552 | 0.0 | Bacterial arginine deiminase signature. | |
>ARGDEIMINASE#Bacterial arginine deiminase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2120 | CARBMTKINASE | 406 | e-146 | Bacterial carbamate kinase signature. | |
>CARBMTKINASE#Bacterial carbamate kinase signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2121 | RTXTOXINA | 37 | 2e-04 | Gram-negative bacterial RTX toxin determinant A family... | |
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2123 | GPOSANCHOR | 33 | 1e-04 | Gram-positive coccus surface protein anchor signature. | |
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. |
44 | SPCG_2155 | SPCG_2162 | N ![]() | Y ![]() | N | Pathogenicity Island (unbiased-composition) |
LocusTag | DNBias | CDNBias | %GCBias | Product | |
SPCG_2155 | -2 | 12 | 0.639868 | hypothetical protein | |
SPCG_2156 | -2 | 14 | 0.087749 | Hsp33-like chaperonin | |
SPCG_2157 | -2 | 11 | 1.050080 | NifR3 family TIM-barrel protein | |
SPCG_2158 | -2 | 13 | 0.160919 | choline binding protein A | |
SPCG_2159 | -1 | 19 | 0.532425 | hypothetical protein | |
SPCG_2160 | -2 | 14 | 0.952698 | sensor histidine kinase | |
SPCG_2161 | -1 | 16 | 2.675404 | DNA-binding response regulator | |
SPCG_2162 | -2 | 18 | 3.389764 | ATP-dependent Clp protease, ATP-binding subunit |
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2155 | PF05043 | 43 | 1e-06 | Transcriptional activator | |
>PF05043#Transcriptional activator | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2158 | IGASERPTASE | 63 | 3e-12 | IgA-specific serine endopeptidase (S6) signature. | |
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2161 | HTHFIS | 81 | 7e-20 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. | |||||
ORFs having significant similarity with Known Virulence factors | |||||
LocusTag | Hits | Score | E-value | Comments | |
SPCG_2162 | HTHFIS | 34 | 0.003 | FIS bacterial regulatory protein HTH signature. | |
>HTHFIS#FIS bacterial regulatory protein HTH signature. |