SPs0132	SPs0139	Y	Y	N	SPs0117	SPs0156
	SPs0132	1	16	3.073811	streptolysin O
	SPs0133	1	23	4.572149	hypothetical protein
	SPs0134	1	23	4.593600	hypothetical protein
	SPs0135	1	22	4.554293	hypothetical protein
	SPs0136	0	23	5.078304	cystathionine beta-lyase
	SPs0137	1	26	5.155873	leucyl-tRNA synthetase
	SPs0138	1	23	4.406285	PTS system ascorbate-specific transporter
	SPs0139	0	22	4.716451	PTS system 3-keto-L-gulonate specific
	132#SPs0132	TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin sig...	889	0.0
		>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin
		           signature.
		          Length = 574
		
		 Score =  889 bits (2299), Expect = 0.0
		 Identities = 566/574 (98%), Positives = 570/574 (99%)
		
		Query: 1   MKDMSNKKTFKKYSRVAGLLTAALIIGNLVTANAESNKQNTASTETTTTNEQPKPESSEL 60
		           MKDMSNKK FKKYSRVAGLLTAALI+GNLVTANA+SNKQNTA+TETTTTNEQPKPESSEL
		Sbjct: 1   MKDMSNKKIFKKYSRVAGLLTAALIVGNLVTANADSNKQNTANTETTTTNEQPKPESSEL 60
		
		Query: 61  TTEKAGQKTDDMLNSNDMIKLAPKEMPLESAEKEEKKSEDKKKSEEDHTEEINDKIYSLN 120
		           TTEKAGQK DDMLNSNDMIKLAPKEMPLESAEKEEKKSED KKSEEDHTEEINDKIYSLN
		Sbjct: 61  TTEKAGQKMDDMLNSNDMIKLAPKEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLN 120
		
		Query: 121 YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA 180
		           YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA
		Sbjct: 121 YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA 180
		
		Query: 181 LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH 240
		           LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH
		Sbjct: 181 LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH 240
		
		Query: 241 DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY 300
		           DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY
		Sbjct: 241 DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY 300
		
		Query: 301 KQIFYTVSANLPNNPADVFDKSVTFKELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK 360
		           KQIFYTVSANLPNNPADVFDKSVT KELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK
		Sbjct: 301 KQIFYTVSANLPNNPADVFDKSVTLKELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK 360
		
		Query: 361 SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK 420
		           SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK
		Sbjct: 361 SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK 420
		
		Query: 421 DNATFSRKNPAYPISYTSVFLKNNKIAGVNNRTEYVETTSTEYTSGKINLSHQGAYVAQY 480
		           DNATFSRKNPAYPISYTSVFLKNNKIAGVNNR+EYVETTSTEYTSGKINLSHQGAYVAQY
		Sbjct: 421 DNATFSRKNPAYPISYTSVFLKNNKIAGVNNRSEYVETTSTEYTSGKINLSHQGAYVAQY 480
		
		Query: 481 EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW 540
		           EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW
		Sbjct: 481 EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW 540
		
		Query: 541 WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK 574
		           WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK
		Sbjct: 541 WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK 574
		
		
SPs0275	SPs0284	Y	N	N	SPs0260	SPs0299
	SPs0275	-1	14	-3.148333	signal peptidase I
	SPs0276	-2	15	-3.350191	ribonuclease HIII
	SPs0277	-2	14	-3.764173	hypothetical protein
	SPs0278	-1	15	-3.007004	hypothetical protein
	SPs0279	-1	15	-3.042726	DNA mismatch repair protein
	SPs0280	0	16	-3.247217	hypothetical protein
	SPs0281	0	19	-1.683281	thioredoxin
	SPs0282	1	22	-1.132172	hypothetical protein
	SPs0283	1	22	0.202214	A/G-specific adenine glycosylase
	SPs0284	2	26	0.465474	hypothetical protein
SPs0410	SPs0451	Y	Y	Y	SPs0395	SPs0434
	SPs0410	4	29	-2.891462	hypothetical protein
	SPs0411	8	29	-2.763282	repressor protein
	SPs0412	9	22	-3.199166	hypothetical protein
	SPs0413	6	22	-1.912435	hypothetical protein
	SPs0414	7	21	-1.433058	hypothetical protein
	SPs0415	4	21	0.894700	hypothetical protein
	SPs0416	3	19	1.545687	hypothetical protein
	SPs0417	3	25	3.626153	hypothetical protein
	SPs0418	4	27	4.169573	hypothetical protein
	SPs0419	3	27	4.091023	phage associated integrase
	SPs0420	2	26	3.853690	hypothetical protein
	SPs0421	2	29	4.024056	hypothetical protein
	SPs0422	2	30	4.171570	DNA polymerase
	SPs0423	1	27	2.874309	phage associated DNA primase
	SPs0424	-1	28	1.613781	hypothetical protein
	SPs0425	-1	24	0.050568	hypothetical protein
	SPs0426	3	20	-1.440784	hypothetical protein
	SPs0427	2	19	-2.168330	hypothetical protein
	SPs0428	1	18	-2.420720	hypothetical protein
	SPs0429	1	17	-2.350815	terminase small subunit (g1p)
	SPs0430	2	17	-2.219007	hypothetical protein
	SPs0431	2	17	-1.475915	hypothetical protein
	SPs0432	0	20	-1.250650	hypothetical protein
	SPs0433	1	16	-0.229463	hypothetical protein
	SPs0434	3	16	0.370371	hypothetical protein
	SPs0435	3	18	-0.193181	hypothetical protein
	SPs0436	0	17	-0.571176	phage associated major head protein
	SPs0437	1	18	-1.374141	hypothetical protein
	SPs0438	4	20	-1.396542	hypothetical protein
	SPs0439	4	18	2.487439	hypothetical protein
	SPs0440	3	18	2.058978	hypothetical protein
	SPs0441	3	19	2.547119	hypothetical protein
	SPs0442	3	19	2.273713	hypothetical protein
	SPs0443	4	19	2.595396	hypothetical protein
	SPs0444	3	19	2.466523	hypothetical protein
	SPs0445	3	23	0.980621	hypothetical protein
	SPs0446	2	24	1.274709	hypothetical protein
	SPs0447	3	25	0.528253	phage associated hyaluronidase
	SPs0448	5	30	2.787676	hypothetical protein
	SPs0449	2	27	0.663127	hypothetical protein
	SPs0450	2	20	-0.233908	hypothetical protein
	SPs0451	3	19	-0.495313	hypothetical protein
	419#SPs0420	MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.	29	0.035
		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.
		          Length = 1104
		
		 Score = 29.3 bits (65), Expect = 0.035
		 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
		
		Query: 123 TSDVVILADGVIEIIDLKYGKGMPVSANQNPQMGLYALGAYASYDMV--YDFDRIKMTII 180
		           +  + ++ D  +E+I+          ANQ  +  +   G  +  D    Y FD  K   +
		Sbjct: 850 SKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNV 909
		
		Query: 181 QPRLDSVSSVDI 192
		           +  L++++SV I
		Sbjct: 910 KITLNNLNSVGI 921
		
		
	446#SPs0447	PF07212#Hyaluronoglucosaminidase	554	0.0
		>PF07212#Hyaluronoglucosaminidase
		          Length = 336
		
		 Score =  554 bits (1429), Expect = 0.0
		 Identities = 255/334 (76%), Positives = 288/334 (86%), Gaps = 2/334 (0%)
		
		Query: 1   MTETIPLRVQFKRMTAEEWARSTVILLEGEIGLETDTGYAKFGDGKNRFSKLKYLNKPDL 60
		           MTETIPLRVQFKRMTAEEW RS VILLE EIG ETDTGYAKFGDGKN+FSKLKYLNKPDL
		Sbjct: 1   MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYLNKPDL 60
		
		Query: 61  DAFAQKKETDNKIAKLESIKADKDTVYLKAESKIELDKKLSLAGGIVTGQLRLKPN-SGI 119
		            AFAQK+ET++KI KLES KADK+ VYLKAESKIELDKKL+L GG++TGQL+ KPN SGI
		Sbjct: 61  GAFAQKEETNSKITKLESSKADKNAVYLKAESKIELDKKLNLKGGVMTGQLQFKPNKSGI 120
		
		Query: 120 EKSSSTGGAINIDMSKSKGAAMVMYTNKDTTDGPLMILRSNKDTFDQSVQFVDYRGKTNA 179
		           + SSS GGAINIDMSKS+GA +V+Y+N DT+DGPLM LR+ K+TF+QS  FVDY GKTNA
		Sbjct: 121 KPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLMSLRTGKETFNQSALFVDYSGKTNA 180
		
		Query: 180 VNIVMRQPPTPNFSSALNITSANEGGSAMQIRGVEKALGTLKITHENPSVDKEYDKNAAA 239
		           VNI MRQP TPNFSSALNITS NE GSAMQIRGVEKALGTLKITHENP+V+  YD+NAAA
		Sbjct: 181 VNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEKALGTLKITHENPNVEANYDENAAA 240
		
		Query: 240 LSIDIVKKKKGGGDGTAAQGIFINSSSGTTGKLLRIRNKNEDKFYVNPDGGFHSYADSIV 299
		           LSIDIVKK+K GG GTAAQGI+INS+SGTTGKLLRIRN  +DKFYV  DGGF++   S +
		Sbjct: 241 LSIDIVKKQK-GGKGTAAQGIYINSTSGTTGKLLRIRNLGDDKFYVKHDGGFYAKKTSQI 299
		
		Query: 300 DGNLTVKNPTSGKHAATKDYVDKKFDELKKLIQK 333
		           DGNL +KNPT+  HAATK YVD +  +LK L+  
		Sbjct: 300 DGNLKLKNPTADDHAATKAYVDSEVKKLKALLMD 333
		
		
	447#SPs0448	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	28	0.039
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score = 28.3 bits (63), Expect = 0.039
		 Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
		
		Query: 109 SAKMDFNSNATINFNSRDNALVRKDGT--HTAFVHFSNATPKGYTGSALY------ASIG 160
		           S   DF   A I     +  L +K GT     ++ F    P+ Y   A        A+I 
		Sbjct: 511 STPADFRMLAPIVL---EQVL-KKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIV 566
		
		Query: 161 ITSSGDGVNSASSGRFAGLRSFRYAT---GYNHTAAVDQTELYGDNVLIADDFSINRGFK 217
		            T   +     S G         Y +    + +  +V  TEL G +V   +     R   
		Sbjct: 567 DTQLKNNEVILS-GEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRRPN 625
		
		Query: 218 FRPDKMEKVL 227
		            R DK+  + 
		Sbjct: 626 SRIDKVRYMF 635
		
		
SPs0500	SPs0584	Y	Y	Y	SPs0485	SPs0524
	SPs0500	0	19	-3.664142	hypothetical protein
	SPs0501	-1	17	-3.589993	late competence protein required for DNA uptake
	SPs0502	1	20	-4.050542	late competence protein
	SPs0503	0	21	-3.658456	hypothetical protein
	SPs0504	0	23	-4.675264	********hypothetical protein
	SPs0505	-1	25	-5.020445	hypothetical protein
	SPs0506	0	26	-5.550388	recombination regulator RecX
	SPs0507	2	31	-6.255301	integrase
	SPs0508	4	35	-8.542733	hypothetical protein
	SPs0509	4	33	-6.716900	hypothetical protein
	SPs0510	3	30	-4.430647	hypothetical protein
	SPs0511	2	30	-3.900847	hypothetical protein
	SPs0512	3	31	-3.971388	hypothetical protein
	SPs0513	3	27	-3.732158	hypothetical protein
	SPs0514	7	27	-3.630924	hypothetical protein
	SPs0515	4	24	-4.161809	phage associated Cro-like repressor
	SPs0516	1	23	-2.740281	hypothetical protein
	SPs0517	2	21	-2.934243	hypothetical protein
	SPs0518	1	18	-2.220873	hypothetical protein
	SPs0519	-1	19	-1.900257	hypothetical protein
	SPs0520	-1	20	-1.471707	hypothetical protein
	SPs0521	-1	19	-0.986864	phage associated helicase
	SPs0522	-1	24	-1.474847	hypothetical protein
	SPs0523	0	27	-0.535024	hypothetical protein
	SPs0524	4	27	-1.341931	hypothetical protein
	SPs0525	5	28	-1.893610	hypothetical protein
	SPs0526	3	25	-1.761316	hypothetical protein
	SPs0527	4	27	-1.229554	hypothetical protein
	SPs0528	5	27	-1.017118	hypothetical protein
	SPs0529	5	25	-1.341476	hypothetical protein
	SPs0530	4	23	-0.347099	hypothetical protein
	SPs0531	5	21	-0.103569	hypothetical protein
	SPs0532	6	22	-0.033603	hypothetical protein
	SPs0533	5	19	-0.305101	hypothetical protein
	SPs0534	3	18	0.013639	terminase large subunit
	SPs0535	4	19	0.104180	hypothetical protein
	SPs0536	4	20	-0.043605	hypothetical protein
	SPs0537	5	24	0.239499	hypothetical protein
	SPs0538	4	24	0.973540	hypothetical protein
	SPs0539	4	25	1.128843	hypothetical protein
	SPs0540	4	26	0.666010	hypothetical protein
	SPs0541	5	23	0.372848	hypothetical protein
	SPs0542	4	25	0.922149	hypothetical protein
	SPs0543	3	20	1.754249	hypothetical protein
	SPs0544	3	20	0.900814	hypothetical protein
	SPs0545	3	19	1.335099	hypothetical protein
	SPs0546	3	19	1.534971	hypothetical protein
	SPs0547	3	19	1.479537	hypothetical protein
	SPs0548	3	19	1.210968	hypothetical protein
	SPs0549	3	18	0.714544	minor structural protein
	SPs0550	3	17	1.372545	minor structural protein
	SPs0551	5	17	0.325380	hypothetical protein
	SPs0552	4	20	-1.058530	hypothetical protein
	SPs0553	4	20	-0.865324	hypothetical protein
	SPs0554	5	18	-0.625067	holin 2
	SPs0555	3	18	-2.266626	hypothetical protein
	SPs0556	4	19	-3.836804	hypothetical protein
	SPs0557	1	16	-1.661897	hypothetical protein
	SPs0558	-1	17	-3.218362	hypothetical protein
	SPs0559	-3	14	-0.022082	hypothetical protein
	SPs0560	-3	15	0.929061	protein SpeA
	SPs0561	-3	16	2.020817	hypothetical protein
	SPs0562	-3	15	2.246961	RNA methyltransferase
	SPs0563	-2	15	2.691046	two-component sensor histidine kinase
	SPs0564	-1	19	4.301154	hypothetical protein
	SPs0565	1	18	3.344793	hypothetical protein
	SPs0566	0	19	2.712237	transcription regulator
	SPs0567	1	16	2.300229	hyaluronidase
	SPs0568	3	18	1.774238	beta-glucosidase
	SPs0569	0	17	0.813529	transcriptional regulator
	SPs0570	1	17	-0.055458	sugar-binding transport protein
	SPs0571	1	16	1.758317	sugar-binding transport protein
	SPs0572	1	16	2.376157	hypothetical protein
	SPs0573	1	19	2.763016	hypothetical protein
	SPs0574	0	18	3.073064	two-component sensor histidine kinase
	SPs0575	1	18	3.275347	two-component response regulator
	SPs0576	1	19	4.227702	beta-galactosidase
	SPs0577	-1	18	3.299435	shikimate 5-dehydrogenase
	SPs0578	-2	17	1.926929	SAM-dependent methyltransferase
	SPs0579	-1	18	1.265202	hypothetical protein
	SPs0580	-1	19	1.504241	acetate kinase
	SPs0581	-1	21	2.422815	hypothetical protein
	SPs0582	-1	21	2.557801	3-dehydroquinate synthase
	SPs0583	0	20	1.739954	3-deoxy-7-phosphoheptulonate synthase
	SPs0584	1	25	4.608944	*hypothetical protein
	520#SPs0521	SECA#SecA protein signature.	31	0.011
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 31.0 bits (70), Expect = 0.011
		 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
		
		Query: 165 VIKH-YEKLAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRD 223
		           +I+   E+ AKG+  +V T S+E S LVS+   +AG +   ++ K   +E     QA   
		Sbjct: 438 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP 497
		
		Query: 224 GKLRILVN 231
		             + I  N
		Sbjct: 498 AAVTIATN 505
		
		
	537#SPs0538	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	31	0.004
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 30.8 bits (69), Expect = 0.004
		 Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
		
		Query: 8    EQSGAQEEAKEQTFDDILSDPKKQAEFDKRVAKAIDTARN-KWVAETEEKENEAK----- 61
		            E +    E  ++   ++ ++ +   E  +  ++  +T         T EKE +AK     
		Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118
		
		Query: 62   --RLAKMNAEQKAQHEKAKLEARIAELEAER--TLSEMKSAARTMLSEANINISDALLSQ 117
		               + K+ ++   + E+++     AE   E   T++  +  ++T  +      +    S 
		Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178
		
		Query: 118  LVSTTDADKTKNAVEAFSEAFSEAIEKEVKERLKSPTPKKSNGN 161
		            +        T N   +  E          +  + S +  K    
		Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222
		
		
	549#SPs0550	FLGFLGJ#Flagellar protein FlgJ signature.	37	3e-04
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score = 37.4 bits (86), Expect = 3e-04
		 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
		
		Query: 294 VFSQLYLESFWGDTPVGRAD----NNWGGI----TWTGATTRPSGINVSQGQSRAEGGYY 345
		           + +Q  LES WG   + R +     N  G+     W G  T  +      G+++     +
		Sbjct: 174 ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKF 233
		
		Query: 346 NHYASVDDYLKDYAYLLAEQGIY-AVKGKLTIDEYTRGLFRVGGATYDYAAAGYDHYAPL 404
		             Y+S  + L DY  LL     Y AV    + ++  + L   G AT  + A    +    
		Sbjct: 234 RVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQ 293
		
		Query: 405 MRDIRAGINRNNNGAMDNV 423
		           M+ I   +++  +  +DN+
		Sbjct: 294 MKSISDKVSKTYSMNIDNL 312
		
		
	552#SPs0553	FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signat...	29	0.007
		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin
		           signature.
		          Length = 405
		
		 Score = 28.9 bits (64), Expect = 0.007
		 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
		
		Query: 25  VSAPVKHVLDNNKKAMEALESAIVKISDD-----LKDNNFKWTESKNHRDRLQKVQDQHE 79
		           + APV   +D    +   L + +  +SD      LKDN F      +   R +   D   
		Sbjct: 38  IDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNEN 97
		
		Query: 80  IRI 82
		           +R+
		Sbjct: 98  VRL 100
		
		
	553#SPs0554	UREASE#Urea amidohydrolase (urease) protein signature.	28	0.009
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 27.8 bits (62), Expect = 0.009
		 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
		
		Query: 46  VARNAVEAVEQIAYDKDIK---GIEKLTEAKIAVRDELSKHNVYLSDK--QMEV 94
		              ++V  V Q + D  +    G+ K   A    R  + K ++  +     +EV
		Sbjct: 486 RTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEV 539
		
		
	559#SPs0560	BACTRLTOXIN#Bacterial toxin signature.	277	1e-96
		>BACTRLTOXIN#Bacterial toxin signature.
		          Length = 266
		
		 Score =  277 bits (711), Expect = 1e-96
		 Identities = 114/257 (44%), Positives = 161/257 (62%), Gaps = 19/257 (7%)
		
		Query: 11  MVFFVLVTFLGLTISQEVFA--QQDPDPSQLHRSS-LVKNLQNIYFLYEGDPVTHENVKS 67
		           ++ F L+    +  +  V A  Q DP P  LH+SS     + N+ +LY+   V+   VKS
		Sbjct: 11  ILIFALIL---VISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKS 67
		
		Query: 68  VDQLLSHDLIYNVSGP---NYDKLKTELKNQEMATLFKDKNIDIYGVEYYHLCYLCE--- 121
		           VD+ L+HDLIYN+S     NYDK+KTEL N+++A  +KD+ +D+YG  YY  CY      
		Sbjct: 68  VDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDN 127
		
		Query: 122 ---NAERSACIYGGVTNHEGNHLEIP--KKIVVKVSIDGIQSLSFDIETNKKMVTAQELD 176
		                    C+YGG+T HEGNH +    + ++V+V  +   ++SF+++T+KK VTAQELD
		Sbjct: 128 VGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELD 187
		
		Query: 177 YKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEP--EFTQSKYLMIYKDN 234
		            K R +L + K LY    S YETGYIKFI  N  +FW+D  P P  +F QSKYLM+Y DN
		Sbjct: 188 IKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDN 247
		
		Query: 235 ETLDSNTSQIEVYLTTK 251
		           +T+DS + +IEV+LTTK
		Sbjct: 248 KTVDSKSVKIEVHLTTK 264
		
		
	568#SPs0569	PF03309#Bvg accessory factor	30	0.012
		>PF03309#Bvg accessory factor
		          Length = 271
		
		 Score = 29.7 bits (67), Expect = 0.012
		 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
		
		Query: 18 LLCIDIGGTSLKFALCHN----GQLSQQSSFPT--PSSLEKFYQLLDQEVARYSAYHFSG 71
		          LL ID+  T     L        ++ QQ    T    + ++    +D  +    A   +G
		Sbjct: 2  LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDG-LIGDDAERLTG 60
		
		Query: 72 IAISS 76
		           +  S
		Sbjct: 61 ASGLS 65
		
		
	573#SPs0574	PF06580#Sensor histidine kinase	180	6e-54
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  180 bits (459), Expect = 6e-54
		 Identities = 71/324 (21%), Positives = 132/324 (40%), Gaps = 34/324 (10%)
		
		Query: 251 LSKAYRMQYNRSGDLLAYVAVRKSYLLAEAVRTVFVYGLVSLLLAWLLLQLL-FRVFRNY 309
		           L+ AYR    R G  L     +    +  A   + +   V+    W LL  +  +     
		Sbjct: 55  LTHAYRSFIKRQG-WLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFT 113
		
		Query: 310 IQQVSEITDTVEMVAAGDLSLTIDNSHMELELYHISEAINQMLASIKAYIDEVYVLEVEQ 369
		           +     I   V +V           + M   LY      +      +A ID+   +    
		Sbjct: 114 LPLALSIIFNVVVV-----------TFMWSLLYF---GWHFFKNYKQAEIDQWK-MASMA 158
		
		Query: 370 RDAQMRALQSQINPHFLYNTLEYIRMYALSCQQEELADVIYAFASLLRNNI--SQDKMTT 427
		           ++AQ+ AL++QINPHF++N L  IR   L     +  +++ + + L+R ++  S  +  +
		Sbjct: 159 QEAQLMALKAQINPHFMFNALNNIRALILE-DPTKAREMLTSLSELMRYSLRYSNARQVS 217
		
		Query: 428 LKEELAFCEKYIYLYQMRYPDSFAYHVKIDESIADLAIPKFVIQPLVENYFVHGIDYSRH 487
		           L +EL   + Y+ L  +++ D   +  +I+ +I D+ +P  ++Q LVEN   HGI     
		Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277
		
		Query: 488 DNALSIKALDETDHLLIQVLDNGRGISQERLADMEKRLQEHQTTGNISIGLQNVYLRLFH 547
		              + +K   +   + ++V + G              L    T  +   GLQNV  RL  
		Sbjct: 278 GGKILLKGTKDNGTVTLEVENTG-------------SLALKNTKESTGTGLQNVRERLQM 324
		
		Query: 548 HFRDRVSWSMAKEPNGGFIIQIRI 571
		            +       ++++  G     + I
		Sbjct: 325 LYGTEAQIKLSEKQ-GKVNAMVLI 347
		
		
	574#SPs0575	HTHFIS#FIS bacterial regulatory protein HTH signature.	85	1e-19
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 84.9 bits (210), Expect = 1e-19
		 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 6/133 (4%)
		
		Query: 4   KVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPGMT 63
		            +L+ DD+  I   L   +     G++V     +      ++     D++++DV MP   
		Sbjct: 5   TILVADDDAAIRTVLNQAL--SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61
		
		Query: 64  GLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQFKDC 123
		             DL+   K   P L  L++S    F    KA E     YL KP D   L   +      
		Sbjct: 62  AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRA 118
		
		Query: 124 LDAQQAESIRQEA 136
		           L   +    + E 
		Sbjct: 119 LAEPKRRPSKLED 131
		
		
SPs0597	SPs0675	Y	Y	Y	SPs0582	SPs0621
	SPs0597	0	20	-3.065469	phage associated integrase
	SPs0598	3	23	-3.525129	hypothetical protein
	SPs0599	1	21	-2.062595	hypothetical protein
	SPs0600	2	21	-1.174568	repressor protein
	SPs0601	1	22	-1.412284	hypothetical protein
	SPs0602	2	23	-1.453569	phage associated P1-type antirepressor
	SPs0603	6	30	-1.480257	hypothetical protein
	SPs0604	6	29	-2.084874	hypothetical protein
	SPs0605	9	33	-2.099737	hypothetical protein
	SPs0606	7	34	-2.271019	hypothetical protein
	SPs0607	9	29	-2.704613	hypothetical protein
	SPs0608	7	25	-2.205576	hypothetical protein
	SPs0609	6	25	-1.681380	hypothetical protein
	SPs0610	6	27	-0.864233	hypothetical protein
	SPs0611	5	25	-0.821471	hypothetical protein
	SPs0612	5	23	-1.104802	hypothetical protein
	SPs0613	4	27	-0.488806	recombination protein
	SPs0614	4	29	0.305108	single strand binding protein
	SPs0615	1	27	-2.047441	hypothetical protein
	SPs0616	2	22	-3.046858	hypothetical protein
	SPs0617	1	24	-3.099959	hypothetical protein
	SPs0618	1	26	-2.067563	hypothetical protein
	SPs0619	2	26	-1.628050	hypothetical protein
	SPs0620	2	25	-2.953013	hypothetical protein
	SPs0621	1	23	-2.456945	hypothetical protein
	SPs0622	0	24	-3.208511	hypothetical protein
	SPs0623	-1	24	-4.262688	hypothetical protein
	SPs0624	3	26	-4.533707	hypothetical protein
	SPs0625	1	22	-2.779431	hypothetical protein
	SPs0626	3	22	-1.098298	ABC transporter
	SPs0627	4	22	-0.138280	hypothetical protein
	SPs0628	4	22	0.121083	hypothetical protein
	SPs0629	5	22	0.693346	hypothetical protein
	SPs0630	3	22	0.764654	hypothetical protein
	SPs0631	3	22	1.129242	minor capsid protein
	SPs0632	2	22	0.859886	minor capsid protein
	SPs0633	1	21	0.627943	hypothetical protein
	SPs0634	0	23	1.747415	hypothetical protein
	SPs0635	1	24	1.610925	hypothetical protein
	SPs0636	2	22	2.095065	phage associated major head protein
	SPs0637	1	25	0.919259	hypothetical protein
	SPs0638	2	26	0.527686	hypothetical protein
	SPs0639	1	16	2.585858	hypothetical protein
	SPs0640	0	17	2.155143	phage associated minor capsid protein
	SPs0641	0	17	2.255224	tail protein
	SPs0642	0	17	2.095312	hypothetical protein
	SPs0643	0	17	2.578085	hypothetical protein
	SPs0644	1	21	3.552680	tail protein
	SPs0645	2	29	2.822747	hypothetical protein
	SPs0646	4	30	3.082133	hypothetical protein
	SPs0647	4	29	3.250892	hypothetical protein
	SPs0648	3	29	3.306057	phage associated hyaluronidase
	SPs0649	4	28	3.509265	hypothetical protein
	SPs0650	0	22	0.814965	hypothetical protein
	SPs0651	-1	20	-0.668714	hypothetical protein
	SPs0652	-1	17	-2.547871	hypothetical protein
	SPs0653	0	16	-2.928599	hypothetical protein
	SPs0654	1	17	-3.612572	hypothetical protein
	SPs0655	1	18	-5.478740	hypothetical protein
	SPs0656	-1	16	-2.088314	hypothetical protein
	SPs0657	1	19	-0.500753	protein SpeL
	SPs0658	-1	18	1.222605	hypothetical protein
	SPs0659	-3	20	1.863438	hypothetical protein
	SPs0660	-2	20	2.063597	two-component response regulator
	SPs0661	-2	19	1.980875	two-component sensor histidine kinase
	SPs0662	-1	17	0.987658	hypothetical protein
	SPs0663	2	22	1.200726	hypothetical protein
	SPs0664	3	22	1.015706	arginine repressor ArgR
	SPs0665	1	20	1.314176	hypothetical protein
	SPs0666	3	23	1.999616	arginine deiminase
	SPs0667	3	18	2.113016	hypothetical protein
	SPs0668	3	16	1.957644	ornithine carbamoyltransferase
	SPs0669	2	14	1.314651	hypothetical protein
	SPs0670	-1	14	0.933363	hypothetical protein
	SPs0671	-2	14	0.011304	carbamate kinase
	SPs0672	-2	16	-1.420641	asparagine synthetase AsnA
	SPs0673	0	18	-2.150646	hypothetical protein
	SPs0674	2	20	-2.772211	phosphopantetheine adenylyltransferase
	SPs0675	2	16	-2.243283	hypothetical protein
	601#SPs0602	ARGREPRESSOR#Bacterial arginine repressor signature.	27	0.046
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score = 27.1 bits (60), Expect = 0.046
		 Identities = 8/24 (33%), Positives = 15/24 (62%)
		
		Query: 151 GELAKILKQNGVNIGQNKLFQWLR 174
		            EL  ILK++G N+ Q  + + ++
		Sbjct: 23  DELVDILKKDGYNVTQATVSRDIK 46
		
		
	611#SPs0612	ANTHRAXTOXNA#Anthrax toxin LF subunit signature.	28	0.026
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.
		          Length = 800
		
		 Score = 27.8 bits (61), Expect = 0.026
		 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
		
		Query: 71  QAEAKVEKYKETIRRAMELSQKKKVDAGMFKVSLRKSKKVEILDETKIPLDYMQEKIEYK 130
		           +  A  E Y E+  +    ++K K +   FK S+    K E  +ET   +   Q+ ++  
		Sbjct: 30  EVNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKI 89
		
		Query: 131 PMKS-EISKALKSGIDISGVELIETESLQ 158
		           P    EI   L   I  + ++L+E + LQ
		Sbjct: 90  PKDVLEIYSELGGEIYFTDIDLVEHKELQ 118
		
		
	643#SPs0644	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	48	2e-07
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 47.8 bits (113), Expect = 2e-07
		 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 29/287 (10%)
		
		Query: 454 LTKESDETKKLKKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLADEIIKL 513
		            T +S + K L+ E+  L      L        +  +  +      +A  + L  E   L
		Sbjct: 136 STADSAKIKTLEAEKAALAARKADLE-------KALEGAMNFSTADSAKIKTLEAEKAAL 188
		
		Query: 514 AAKENKTAGEKRNLKNKIDELNGSIDGLNLAYDKNSNSLSHNADQIKSRISAMEAESTWQ 573
		            A++ +         N     +  I  L       +   +     ++  +      S   
		Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA----DLEKALEGAMNFS--- 241
		
		Query: 574 TAQQNLLNIEQKRSEVSKKLAENAELRKKWNEEANVSDSVRKEKIAELTEEEAKLKNMQT 633
		               +   I+   +E +   A  AEL K   E A    +    KI  L  E+A L+  + 
		Sbjct: 242 --TADSAKIKTLEAEKAALEARQAELEKA-LEGAMNFSTADSAKIKTLEAEKAALEAEKA 298
		
		Query: 634 QLQEEYNKTSATQQAAADAMAAAEESGSARQVIAYENMSEAQRTAIDNMRTKYSELLETT 693
		            L+ +    +A +Q+    + A+ E  + +Q+ A     E Q    +  R      L+ +
		Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASRE--AKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 356
		
		Query: 694 TSIFDAIE----------QKTALSVDQMNANLEKNRAATEQWATNLE 730
		                 +E          + +  S   +  +L+ +R A +Q    LE
		Sbjct: 357 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALE 403
		
		
		
		 Score = 30.8 bits (69), Expect = 0.032
		 Identities = 43/240 (17%), Positives = 77/240 (32%), Gaps = 33/240 (13%)
		
		Query: 454 LTKESDETKKLKKEQEGLVESNKQLRDSVREGVQERKKGLESVKESTAAHQKLADEIIKL 513
		            T +S + K L+ E+  L      L  ++   +         +K   A    L     +L
		Sbjct: 206 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL 265
		
		Query: 514 AAKENKTAGEKRNLKNKIDELNGSIDGL----------NLAYDKNSNSLSHNADQIKSRI 563
		                           KI  L      L          +   + N  SL  + D  +   
		Sbjct: 266 EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAK 325
		
		Query: 564 SAMEAESTWQTAQQNLLNIEQKRSEVSKKLAENAELRK-------KWNEEANVSDSVR-- 614
		             +EAE   Q  ++     E  R  + + L  + E +K       K  E+  +S++ R  
		Sbjct: 326 KQLEAEH--QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 383
		
		Query: 615 -----------KEKI-AELTEEEAKLKNMQTQLQEEYNKTSATQQAAADAMAAAEESGSA 662
		                      K+++   L E  +KL  ++   +E       T++  A+  A  E    A
		Sbjct: 384 LRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKA 443
		
		
	647#SPs0648	PF07212#Hyaluronoglucosaminidase	507	0.0
		>PF07212#Hyaluronoglucosaminidase
		          Length = 336
		
		 Score =  507 bits (1307), Expect = 0.0
		 Identities = 260/343 (75%), Positives = 287/343 (83%), Gaps = 15/343 (4%)
		
		Query: 1   MSENIPLRVQFKRMKAAEWARSDVILLESEIGFETDTGFARAGDGHNRFSDLGYISPLDY 60
		           M+E IPLRVQFKRM A EW RSDVILLESEIGFETDTG+A+ GDG N+FS L Y+     
		Sbjct: 1   MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYL----- 55
		
		Query: 61  NLLTNKPNIDGLATKVETAQKLQQ----KADKETVYTKAESKQELDKKLNLKGGVMTGQL 116
		               NKP++   A K ET  K+ +    KADK  VY KAESK ELDKKLNLKGGVMTGQL
		Sbjct: 56  ----NKPDLGAFAQKEETNSKITKLESSKADKNAVYLKAESKIELDKKLNLKGGVMTGQL 111
		
		Query: 117 KFKPAAT-VAYSSSTGGAVNIDLSSSRGAGVVVYSDNDTSDGPLMSLRTGKETFNQSALF 175
		           +FKP  + +  SSS GGA+NID+S S GAGVVVYS+NDTSDGPLMSLRTGKETFNQSALF
		Sbjct: 112 QFKPNKSGIKPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLMSLRTGKETFNQSALF 171
		
		Query: 176 VDYKGTTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQLRGSEKALGTLKITHENPSIG 235
		           VDY G TNAVNIAMRQPTTPNFSSALNITSGNENGSAMQ+RG EKALGTLKITHENP++ 
		Sbjct: 172 VDYSGKTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEKALGTLKITHENPNVE 231
		
		Query: 236 ADYDKNAAALSIDIVKKTNGA-GTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVKSDGGF 294
		           A+YD+NAAALSIDIVKK  G  GTAAQGIYINSTSGTTGKLLRIRNL DDKFYVK DGGF
		Sbjct: 232 ANYDENAAALSIDIVKKQKGGKGTAAQGIYINSTSGTTGKLLRIRNLGDDKFYVKHDGGF 291
		
		Query: 295 YAKETSQIDGNLKLKDPTANDHAATKAYVDKAISELKKLILKK 337
		           YAK+TSQIDGNLKLK+PTA+DHAATKAYVD  + +LK L++ K
		Sbjct: 292 YAKKTSQIDGNLKLKNPTADDHAATKAYVDSEVKKLKALLMDK 334
		
		
	648#SPs0649	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	34	0.001
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 34.4 bits (79), Expect = 0.001
		 Identities = 17/173 (9%), Positives = 44/173 (25%), Gaps = 7/173 (4%)
		
		Query: 117 TEIVNSARGVATRISEDTDKKLALINDTIDGIRREYRDADRKLSASYQAGIEGLKATMAN 176
		               +        +    +     +++                  + +   E        
		Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214
		
		Query: 177 DKIGLQAEIKA--SAQGLSQKYDNELRQLSAKITTTSSGTTEAYESKLAGLRAEFTRSNQ 234
		           +++ + A I    +   + +   ++   L  K    +       E+K      E  R  +
		Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHK-QAIAKHAVLEQENKYVEAVNEL-RVYK 272
		
		Query: 235 GTRTELESQISGLRAVQQTTASQISQEIRNREGAVSRVQQGLDSYQRRLQSAE 287
		               ++ES+I   +   Q        EI      + +    +      L   E
		Sbjct: 273 SQLEQIESEILSAKEEYQLVTQLFKNEIL---DKLRQTTDNIGLLTLELAKNE 322
		
		
	653#SPs0654	FLGFLGJ#Flagellar protein FlgJ signature.	87	2e-21
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score = 87.1 bits (215), Expect = 2e-21
		 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
		
		Query: 23  SLTAAQAILESGWGKHA-------PHNALFGIKADASWTGKSFDTKTQEEYQPGIVTDIV 75
		            L  AQA LESGWG+         P   LFG+KA  +W G   +  T E Y+ G    + 
		Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230
		
		Query: 76  DRFRAYDSWTDSIIDHGKFLNDNPRYKAVIGETDYKKACYAIKAAGYATASSYVELLIQL 135
		            +FR Y S+ +++ D+   L  NPRY AV      ++   A++ AGYAT   Y   L  +
		Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290
		
		Query: 136 IEEND 140
		           I++  
		Sbjct: 291 IQQMK 295
		
		
	656#SPs0657	BACTRLTOXIN#Bacterial toxin signature.	45	6e-08
		>BACTRLTOXIN#Bacterial toxin signature.
		          Length = 266
		
		 Score = 44.9 bits (106), Expect = 6e-08
		 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 36/222 (16%)
		
		Query: 6   LKEIYN-KEIIEKNNISINAKQGTQLIFNTDENTTVWNDNTFKKVISSNLSPSQERMFNV 64
		           +K +Y+   +      S++      LI+N  +      D    KV +  L+    + +  
		Sbjct: 51  MKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYD----KVKTELLNEDLAKKYK- 105
		
		Query: 65  GDHVNIFAIVKSYHVVCKEQFNYSD---------GGIIKTSDVKPEE---KAIYINIFGE 112
		            + V+++      +     + N            GGI K      +    + + + ++  
		Sbjct: 106 DEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYEN 165
		
		Query: 113 KELRTLTAKDKITFKNNIVTLQEIDVRLRKSLMGDSKIKLYEYD-SLYKKGFWDIHYKDG 171
		           K     T   ++      VT QE+D++ R  L+  +K  LYE++ S Y+ G+      +G
		Sbjct: 166 KRN---TISFEVQTDKKSVTAQELDIKARNFLI--NKKNLYEFNSSPYETGYIKFIENNG 220
		
		Query: 172 GIRHTNLFTYPD-----------YTDNETIDMSKVSHFDVHL 202
		                ++   P            Y DN+T+D SK    +VHL
		Sbjct: 221 NTFWYDMMPAPGDKFDQSKYLMMYNDNKTVD-SKSVKIEVHL 261
		
		
	659#SPs0660	HTHFIS#FIS bacterial regulatory protein HTH signature.	93	1e-23
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 92.6 bits (230), Expect = 1e-23
		 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
		
		Query: 2   LIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGI 61
		           L+ +D+  +R  +   +  + +    V    N    W        D+V+TD+ MP  N  
		Sbjct: 7   LVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 62  QLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLQQKLD 121
		            L   IK+  P   ++ ++  + F  A+ A + GA DYL KPF   D+ +++G + + L 
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRALA 120
		
		Query: 122 LSKKTETIQELVEQPQKEVSAIAMAIHE------RLADSDLTL 158
		             K+  +  E   Q    +   + A+ E      RL  +DLTL
		Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
		
		
	660#SPs0661	PF06580#Sensor histidine kinase	183	7e-55
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  183 bits (466), Expect = 7e-55
		 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 10/203 (4%)
		
		Query: 362 EKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGN- 420
		                + +L AL +QINPHF++N L+ I  +    D  +  E+  SL++  R +L   N 
		Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNA 213
		
		Query: 421 EYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIK 480
		             + LADEL  V  YL +   ++ D+L +E Q      D  +P +++Q LVEN I HGI 
		Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273
		
		Query: 481 EVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHY 540
		           ++ + G I +  +     + L V + G     ++  ++       G GL+NV +RL++ Y
		Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST-------GTGLQNVRERLQMLY 326
		
		Query: 541 GEGYHMTIHSQSDQFTEIQLSLP 563
		           G    + +  +  +   + + +P
		Sbjct: 327 GTEAQIKLSEKQGKVNAM-VLIP 348
		
		
	663#SPs0664	ARGREPRESSOR#Bacterial arginine repressor signature.	123	7e-39
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score =  123 bits (310), Expect = 7e-39
		 Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
		
		Query: 1   MNKKETRHRLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDT 60
		           MNK + RH  IR +I+   I TQ EL + L+K+G  +TQAT+SRD+KEL+LVKV + N +
		Sbjct: 1   MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59
		
		Query: 61  HYEALAISQTRWEH-RLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIV 119
		           +  +L   Q      +L+  + DA V +    H I+LKT+PG AQ+ G+++D +   EI+
		Sbjct: 60  YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119
		
		Query: 120 ATVCGDDTCLIVCEDNEQAKACYETL 145
		            T+CGDDT LI+C  ++  K   + +
		Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
		
		
	665#SPs0666	ARGDEIMINASE#Bacterial arginine deiminase signature.	579	0.0
		>ARGDEIMINASE#Bacterial arginine deiminase signature.
		          Length = 409
		
		 Score =  579 bits (1493), Expect = 0.0
		 Identities = 192/410 (46%), Positives = 277/410 (67%), Gaps = 9/410 (2%)
		
		Query: 5   TPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDE 64
		            PI+++SEIG+LKKVLLHRPG+E+ENL P  ++  LFDDIP+LE A++EH+ FA  L++ 
		Sbjct: 6   NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65
		
		Query: 65  GIEVLYLETLAAESLVTP-EIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEK 123
		            +E+ Y+E L +E LV+   +   FI +++ EA I+   T   +++   ++     +I K
		Sbjct: 66  LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSL-TIDNMISK 124
		
		Query: 124 TMAGVQKSELPEIPASEKGLTDLVESSYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSE 183
		            ++GV   EL    +S   L DLV  +  F IDPMPN+ FTRDPFA+IG GV++N MF++
		Sbjct: 125 MISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181
		
		Query: 184 TRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAA 243
		            R RET++ +YIF +HP+Y    VP+  +R E   +EGGDELVL+K +L +GIS+RT+A 
		Sbjct: 182 VRQRETIFAEYIFKYHPVYKE-NVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAK 240
		
		Query: 244 SIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSV 303
		           S+EKL +++FK    F  +LAF+   NR +MHLDTVFT +DY  FT     +    +Y +
		Sbjct: 241 SVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVL 300
		
		Query: 304 TYDNE--ELHIVEEKGDLADLLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAP 361
		           TY+    ++HI +EK  + D+L+  LG  K+D+I+C G +L+   REQWNDG+N L IAP
		Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359
		
		Query: 362 GVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
		           G ++ Y+RN +TN + E  G+K+ +I  SEL RGRGGPRCMSMP  REDI
		Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
		
		
	670#SPs0671	CARBMTKINASE#Bacterial carbamate kinase signature.	407	e-146
		>CARBMTKINASE#Bacterial carbamate kinase signature.
		          Length = 314
		
		 Score =  407 bits (1048), Expect = e-146
		 Identities = 141/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%)
		
		Query: 3   KQKIVVALGGNAIL--STDASAKAQQEALISTSKSLVKLIKEGHEVIVTHGNGPQVGNLL 60
		            +++V+ALGGNA+       S +   + +  T++ + ++I  G+EV++THGNGPQVG+LL
		Sbjct: 2   GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
		
		Query: 61  LQQAAADSEKN-PAMPLDTCVAMTEGSIGFWLVNALDNELQAQGIQKEVAAVVTQVIVDA 119
		           L   A  +    PA P+D   AM++G IG+ +  AL NEL+ +G++K+V  ++TQ IVD 
		Sbjct: 62  LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121
		
		Query: 120 KDPAFENPTKPIGPFLTEEDAKKQMAESGASFKEDAGRGWRKVVPSPKPVGIKEANVIRS 179
		            DPAF+NPTKP+GPF  EE AK+   E G   KED+GRGWR+VVPSP P G  EA  I+ 
		Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKK 181
		
		Query: 180 LVDSGVVVVSAGGGGVPVVEDATSKTLTGVEAVIDKDFASQTLSELVDADLFIVLTGVDN 239
		           LV+ GV+V+++GGGGVPV+ +     + GVEAVIDKD A + L+E V+AD+F++LT V+ 
		Sbjct: 182 LVERGVIVIASGGGGVPVILED--GEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239
		
		Query: 240 VYVNFNKPDQTKLEEVTVSQMKEYITQDQFAPGSMLPKVEAAIAFVENKPNAKAIITSLE 299
		             + +    +  L EV V ++++Y  +  F  GSM PKV AAI F+E     +AII  LE
		Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLE 298
		
		Query: 300 NIDNVLSANAGTQII 314
		                L    GTQ++
		Sbjct: 299 KAVEALEGKTGTQVL 313
		
		
	673#SPs0674	LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signat...	153	2e-50
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein
		           signature.
		          Length = 166
		
		 Score =  153 bits (388), Expect = 2e-50
		 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
		
		Query: 5   IGLYTGSFDPVTNGHLDIVKRASGLFDQIYVGIFDNPTKKSYFKLEVRKAMLTQALADFT 64
		             +Y GSFDP+T GHLDI++R   LFDQ+YV +  NP K+  F ++ R   + +A+A   
		Sbjct: 2   NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61
		
		Query: 65  NVIVVTSHERLAIDVAKELRVTHLIRGLRNATDFEYEENLEYFNHLLAPNIETVYLISRN 124
		           N  V +  E L ++ A++ +   ++RGLR  +DFE E  +   N  LA ++ETV+L +  
		Sbjct: 62  NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120
		
		Query: 125 KWQALSSSRVRELIHFQSSLEGLVPQSVIAQV-EKMN 160
		           ++  LSSS V+E+  F  ++E  VP  V A + ++ +
		Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
		
		
SPs0712	SPs0726	Y	Y	Y	SPs0697	SPs0736
	SPs0712	0	18	-3.667412	hypothetical protein
	SPs0713	-1	16	-4.276664	hypothetical protein
	SPs0714	0	16	-4.534651	hypothetical protein
	SPs0715	1	20	-4.121316	hypothetical protein
	SPs0716	2	23	-3.539204	histone-like DNA-binding protein
	SPs0717	2	20	-3.792673	phage associated integrase
	SPs0718	1	21	-3.178480	hypothetical protein
	SPs0719	1	24	-2.259900	phage associated repressor
	SPs0720	2	27	-2.404846	phage associated Cro-like repressor
	SPs0721	3	28	-1.514746	excisionase
	SPs0722	5	32	-1.997177	hypothetical protein
	SPs0723	4	30	-2.118756	hypothetical protein
	SPs0724	2	25	-2.235749	hypothetical protein
	SPs0725	1	22	-2.620755	hypothetical protein
	SPs0726	2	22	-0.838055	hypothetical protein
	715#SPs0716	DNABINDINGHU#Prokaryotic integration host factor signature.	124	5e-41
		>DNABINDINGHU#Prokaryotic integration host factor signature.
		          Length = 91
		
		 Score =  124 bits (312), Expect = 5e-41
		 Identities = 82/91 (90%), Positives = 87/91 (95%)
		
		Query: 1  MANKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARK 60
		          MANKQDLIAKVAEATELTKKDSAAAVDAVFS + ++LA+GEKVQLIGFGNFEVRERAARK
		Sbjct: 1  MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60
		
		Query: 61 GRNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
		          GRNPQTG EI+I ASKVPAFKAGKALKDAVK
		Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
		
		
	718#SPs0719	SACTRNSFRASE#Streptothricin acetyltransferase signature.	28	0.026
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 28.0 bits (62), Expect = 0.026
		 Identities = 13/37 (35%), Positives = 18/37 (48%)
		
		Query: 119 KSEETEDYITDYVEGLVAAGLGAYQEDNLHMKVKLRS 155
		           K  E +D    YVE    A    Y E+N   ++K+RS
		Sbjct: 48  KQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRS 84
		
		
SPs0755	SPs0766	Y	Y	N	SPs0740	SPs0779
	SPs0755	2	16	-0.650735	hypothetical protein
	SPs0756	1	17	-0.841299	hypothetical protein
	SPs0757	1	16	-0.168034	phage associated structural protein
	SPs0758	0	16	0.273798	hypothetical protein
	SPs0759	2	17	0.809239	hypothetical protein
	SPs0760	2	18	0.749276	hypothetical protein
	SPs0761	1	20	0.646095	hypothetical protein
	SPs0762	2	20	0.688752	hypothetical protein
	SPs0763	2	23	0.449442	hyaluronoglucosaminidase
	SPs0764	5	24	1.654406	phage associated hyaluronidase
	SPs0765	3	20	0.088540	hypothetical protein
	SPs0766	3	20	0.535929	hypothetical protein
	759#SPs0760	RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family...	40	5e-05
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family
		           signature.
		          Length = 1024
		
		 Score = 39.6 bits (92), Expect = 5e-05
		 Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
		
		Query: 503 LGASGQGLSSMLSSAWGNIQTVVSTAKNMITLAIDGIKL--VFSNLGNAGNILKGLLSAA 560
		            G    G +  +    G    ++ST +N +  A+  +K+  +     + GN+    L+ A
		Sbjct: 124 AGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKA 183
		
		Query: 561 WSAMQNAVVIAKGIINSAISAIKTAFSSFGNLVSSVSGTIKSVIGSLKNAFYSLASIDLV 620
		              + N +V     +N+ +++     ++ G+++S+        +  + N   +L ++D +
		Sbjct: 184 SIELINQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKH-----LNGVGNKLQNLPNLDNI 238
		
		Query: 621 GAGRAIMQGFLNG 633
		           GAG   + G L+ 
		Sbjct: 239 GAGLDTVSGILSA 251
		
		
	762#SPs0763	PF07212#Hyaluronoglucosaminidase	511	0.0
		>PF07212#Hyaluronoglucosaminidase
		          Length = 336
		
		 Score =  511 bits (1318), Expect = 0.0
		 Identities = 242/358 (67%), Positives = 284/358 (79%), Gaps = 39/358 (10%)
		
		Query: 1   MSADEWARSDVILLEGEIGFETDTGYAKFGNGKSKFSALKYLTGPKGPKGDTGFQGKTGG 60
		           M+A+EW RSDVILLE EIGFETDTGYAKFG+GK++FS LKYL                  
		Sbjct: 14  MTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYL------------------ 55
		
		Query: 61  TGPRGPAGKPGTTDYNQLQNKPNLDAFARKQETDSKITELKSNKADKNAVYLKAESNAKL 120
		                              NKP+L AFA+K+ET+SKIT+L+S+KADKNAVYLKAES  +L
		Sbjct: 56  -------------------NKPDLGAFAQKEETNSKITKLESSKADKNAVYLKAESKIEL 96
		
		Query: 121 DEKLSLTGGIVTGQLQFKPN-SGIKPSSSVGGAINIDMSKSEGAAMVMYTNKDTTDGPLM 179
		           D+KL+L GG++TGQLQFKPN SGIKPSSSVGGAINIDMSKSEGA +V+Y+N DT+DGPLM
		Sbjct: 97  DKKLNLKGGVMTGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLM 156
		
		Query: 180 ILRSDKDTFDQSAQFVDYSGKTNAVNIVMRQPSAPNFSSALNITSANEGGSAMQIRGVEK 239
		            LR+ K+TF+QSA FVDYSGKTNAVNI MRQP+ PNFSSALNITS NE GSAMQIRGVEK
		Sbjct: 157 SLRTGKETFNQSALFVDYSGKTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEK 216
		
		Query: 240 ALGTLKITHENPNVKANYDENAAALSIDIVKKTN-GEGTAAQGIYINSSTGTTGKMLRIR 298
		           ALGTLKITHENPNV+ANYDENAAALSIDIVKK   G+GTAAQGIYINS++GTTGK+LRIR
		Sbjct: 217 ALGTLKITHENPNVEANYDENAAALSIDIVKKQKGGKGTAAQGIYINSTSGTTGKLLRIR 276
		
		Query: 299 NKNEDKFYVGPDGGFHSGANSTVAGNLTVKDPTSGKHAATKDYVDEKIAELKKLILKK 356
		           N  +DKFYV  DGGF++   S + GNL +K+PT+  HAATK YVD ++ +LK L++ K
		Sbjct: 277 NLGDDKFYVKHDGGFYAKKTSQIDGNLKLKNPTADDHAATKAYVDSEVKKLKALLMDK 334
		
		
SPs0872	SPs0904	Y	Y	Y	SPs0857	SPs0896
	SPs0872	-2	15	-3.096219	maltose operon transcriptional repressor
	SPs0873	-1	18	-2.630244	4-alpha-glucanotransferase
	SPs0874	-1	20	-2.971105	glycogen phosphorylase
	SPs0875	-2	18	-4.250753	hypothetical protein
	SPs0876	-1	22	-4.738798	hypothetical protein
	SPs0877	0	23	-4.946789	phage associated integrase
	SPs0878	2	25	-5.355501	hypothetical protein
	SPs0879	2	25	-4.699103	repressor protein
	SPs0880	1	27	-5.098341	hypothetical protein
	SPs0881	1	26	-5.343228	hypothetical protein
	SPs0882	1	27	-4.741163	hypothetical protein
	SPs0883	1	29	-4.519373	hypothetical protein
	SPs0884	2	29	-3.615832	hypothetical protein
	SPs0885	5	24	-4.883970	hypothetical protein
	SPs0886	3	27	-4.185552	hypothetical protein
	SPs0887	1	23	-2.527007	hypothetical protein
	SPs0888	2	20	-2.961881	hypothetical protein
	SPs0889	2	20	-2.865082	hypothetical protein
	SPs0890	0	18	-2.091177	hypothetical protein
	SPs0891	0	19	-1.593157	hypothetical protein
	SPs0892	-1	18	-1.200897	helicase
	SPs0893	2	19	-2.195067	hypothetical protein
	SPs0894	2	21	-2.630244	orf53b-like protein
	SPs0895	3	21	-2.115111	hypothetical protein
	SPs0896	5	24	-2.982395	primase
	SPs0897	3	24	-2.456412	primase
	SPs0898	3	26	-2.868358	hypothetical protein
	SPs0899	3	25	-2.961835	hypothetical protein
	SPs0900	4	27	-2.149719	hypothetical protein
	SPs0901	3	27	-2.343079	hypothetical protein
	SPs0902	4	27	-2.125183	hypothetical protein
	SPs0903	3	24	-2.385811	DNA N-4 cytosine methyltransferase
	SPs0904	2	20	-1.730161	hypothetical protein
	891#SPs0892	SECA#SecA protein signature.	31	0.011
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 31.0 bits (70), Expect = 0.011
		 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
		
		Query: 165 VIKH-YEKLAKGKQAIVYTHSVEASHLVSDMFNQAGYQSQSVSGKTPKSEREEAMQAFRD 223
		           +I+   E+ AKG+  +V T S+E S LVS+   +AG +   ++ K   +E     QA   
		Sbjct: 438 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP 497
		
		Query: 224 GKLRILVN 231
		             + I  N
		Sbjct: 498 AAVTIATN 505
		
		
	901#SPs0902	PF06580#Sensor histidine kinase	26	0.038
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 25.6 bits (56), Expect = 0.038
		 Identities = 7/45 (15%), Positives = 18/45 (40%)
		
		Query: 29  LFLAIAIFGMMVTVSYFSYRDARQYYEPQIYGLRTQLSMTQKQLK 73
		           +   + +   M ++ YF +   + Y + +I   +      + QL 
		Sbjct: 120 IIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLM 164
		
		
SPs0913	SPs0939	Y	Y	N	SPs0898	SPs0937
	SPs0913	3	19	-1.449445	ClpP-like protease
	SPs0914	2	17	-2.049348	hypothetical protein
	SPs0915	0	15	-0.957760	hypothetical protein
	SPs0916	1	15	-1.238899	hypothetical protein
	SPs0917	1	14	-1.274296	hypothetical protein
	SPs0918	3	13	1.685510	hypothetical protein
	SPs0919	3	14	1.874364	hypothetical protein
	SPs0920	2	15	2.085849	hypothetical protein
	SPs0921	4	17	1.930514	hypothetical protein
	SPs0922	2	15	1.835284	hypothetical protein
	SPs0923	3	18	2.452397	phage-related tail protein
	SPs0924	2	24	1.698675	hypothetical protein
	SPs0925	3	24	1.615620	hypothetical protein
	SPs0926	3	22	1.522351	hypothetical protein
	SPs0927	3	23	1.480170	phage associated hyaluronidase
	SPs0928	4	24	2.935078	hypothetical protein
	SPs0929	3	26	2.044082	hypothetical protein
	SPs0930	3	28	2.445969	hypothetical protein
	SPs0931	4	27	2.191142	hypothetical protein
	SPs0932	3	27	2.411945	phage associated holin
	SPs0933	1	18	3.325491	hypothetical protein
	SPs0934	2	19	6.231796	hypothetical protein
	SPs0935	2	20	6.161945	hypothetical protein
	SPs0936	0	17	5.939022	hypothetical protein
	SPs0937	0	16	5.604731	repressor C1
	SPs0938	1	17	5.618512	GTP-binding protein LepA
	SPs0939	1	19	5.623197	SclB protein
	926#SPs0927	PF07212#Hyaluronoglucosaminidase	495	e-179
		>PF07212#Hyaluronoglucosaminidase
		          Length = 336
		
		 Score =  495 bits (1275), Expect = e-179
		 Identities = 242/354 (68%), Positives = 275/354 (77%), Gaps = 35/354 (9%)
		
		Query: 1   MTTQGWESSSDILMEREIGIDMTTGYPKVGDGKNKFKDLKDLRGPMGPQGPTGERGPIGP 60
		           MT + W  S  IL+E EIG +  TGY K GDGKN+F  LK L                  
		Sbjct: 14  MTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYL------------------ 55
		
		Query: 61  TGPIGKPGTTDYNQLQNKPNLDAFAQKKETNSKITKLESSKADKSAVYSKAESKIELDKK 120
		                           NKP+L AFAQK+ETNSKITKLESSKADK+AVY KAESKIELDKK
		Sbjct: 56  ----------------NKPDLGAFAQKEETNSKITKLESSKADKNAVYLKAESKIELDKK 99
		
		Query: 121 LSLTGGIVTGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGAAMVMYTNKDTTDGPLMILR 180
		           L+L GG++TGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGA +V+Y+N DT+DGPLM LR
		Sbjct: 100 LNLKGGVMTGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLMSLR 159
		
		Query: 181 SDKETFNQSALFVDYSGKTNAVNIVMRQPSTPNFSSALNITSANEGGSAMQIRGVEKALG 240
		           + KETFNQSALFVDYSGKTNAVNI MRQP+TPNFSSALNITS NE GSAMQIRGVEKALG
		Sbjct: 160 TGKETFNQSALFVDYSGKTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEKALG 219
		
		Query: 241 TLKITHENPNVKANYDENAAALSIDIVKKTN-GEGTAAQGIYINSSTGTTGKMLRIRNKN 299
		           TLKITHENPNV+ANYDENAAALSIDIVKK   G+GTAAQGIYINS++GTTGK+LRIRN  
		Sbjct: 220 TLKITHENPNVEANYDENAAALSIDIVKKQKGGKGTAAQGIYINSTSGTTGKLLRIRNLG 279
		
		Query: 300 EDKFYVGPDGGFHSGANSTVTGNLTVKDPTSEKHAATKKYVDEKIAELKKLIQK 353
		           +DKFYV  DGGF++   S + GNL +K+PT++ HAATK YVD ++ +LK L+  
		Sbjct: 280 DDKFYVKHDGGFYAKKTSQIDGNLKLKNPTADDHAATKAYVDSEVKKLKALLMD 333
		
		
	927#SPs0928	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	36	6e-04
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 35.6 bits (82), Expect = 6e-04
		 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
		
		Query: 171 LKLDLNKANEQTASLQASINGLRQEYQDAERKLSASYQTGINGLKA-TMANDKY--DLKA 227
		           LKL    A   T   Q+S   L Q   +  R    S    +N L    + ++ Y  ++  
		Sbjct: 125 LKLTALGAEADTLKTQSS---LLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSE 181
		
		Query: 228 EIQATARGLSQE----YDNKLHQLSAKIKTTSSG------TTEAYENKLAGLRAEFTR-- 275
		           E       L +E    + N+ +Q    +    +           YEN     ++      
		Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241
		
		Query: 276 --SNQG-----TRTELESQISGLRAVQQTTASQISQEIRDRTGAVSRVQQDLESYQR--- 325
		              ++         E E++        +   SQ+ Q   +   A    Q   + ++    
		Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL 301
		
		Query: 326 -RLQDAEDNYSSLTH 339
		            +L+   DN   LT 
		Sbjct: 302 DKLRQTTDNIGLLTL 316
		
		
	932#SPs0933	FLGFLGJ#Flagellar protein FlgJ signature.	94	1e-23
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score = 93.6 bits (232), Expect = 1e-23
		 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
		
		Query: 23  SLTAAQAILESGWGKHA-------PHNALFGIKADSSWTGKSFDTKTQEEYQAGVVTDIV 75
		            L  AQA LESGWG+         P   LFG+KA  +W G   +  T E Y+ G    + 
		Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230
		
		Query: 76  DRFRAYDSWTDSIIDHGKFLNDNPRYKAVVGETDYKKACHAIKDAGYATASGYAELLIQI 135
		            +FR Y S+ +++ D+   L  NPRY AV      ++   A++DAGYAT   YA  L  +
		Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290
		
		Query: 136 IKE 138
		           I++
		Sbjct: 291 IQQ 293
		
		
	937#SPs0938	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	115	4e-29
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score =  115 bits (290), Expect = 4e-29
		 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
		
		Query: 12  KIRNFSIIAHIDHGKSTLADRILEK---TETVSSREMQAQLLDSMDLERERGITIKLNAI 68
		           KI N  ++AH+D GK+TL + +L        + S +      D+  LER+RGITI+    
		Sbjct: 2   KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61
		
		Query: 69  ELNYTARDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLA 128
		              +     E    ++IDTPGH+DF  EV RSL+  +GAIL++ A  G++AQT    +  
		Sbjct: 62  SFQW-----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116
		
		Query: 129 LDNDLEILPVINKIDLPAADPERVCHEVEDVIGLDA 164
		               +  +  INKID    D   V  ++++ +  + 
		Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 152
		
		
		
		 Score = 93.4 bits (232), Expect = 6e-22
		 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
		
		Query: 171 SAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGD 230
		           SAK  IGI+ ++E I  K  + T    + L   +F   Y   R  +  +R+ +G++   D
		Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279
		
		Query: 231 KIQMMSNGKTFDVTEVGIFTP-KAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNP 289
		            +++    K   +TE+      +    D   +G++  +      +    +GDT  L    
		Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQRE 337
		
		Query: 290 AKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFE--PETSQALGFGF 347
		             E         P++   + P +  +   L +AL ++  +D  L++     T + +    
		Sbjct: 338 RIENPL------PLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEII---- 387
		
		Query: 348 RCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVY 381
		              FLG + M+V    L+ ++++++ +  P+V+Y
		Sbjct: 388 -LSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420
		
		
		
		 Score = 43.3 bits (102), Expect = 2e-06
		 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
		
		Query: 393 VSNPSEFPDPTRVAFIE----------EPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMD 442
		           VS P++F     +   +          EPY+  +I  PQE++      + +   + V   
		Sbjct: 510 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ 569
		
		Query: 443 YIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYR 486
		            + +N V +  +IP   I  ++   L   T G +    ++  Y 
		Sbjct: 570 -LKNNEVILSGEIPARCI-QEYRSDLTFFTNGRSVCLTELKGYH 611
		
		
	938#SPs0939	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	70	3e-15
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 70.1 bits (171), Expect = 3e-15
		 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
		
		Query: 250 QPGKPAPKTPEVPQKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRGLNKPQTQGGNQLAK 309
		           +  K A +  ++     +   TP             P  +    +G         NQ   
		Sbjct: 447 KLAKQAEELAKLRAGKASDSQTPDAK----------PGNKAVPGKGQAPQAGTKPNQ--N 494
		
		Query: 310 TPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN 354
		                +T RQLP+TGET NPFFTAAA+ +M TAGV AV KR+E N
		Sbjct: 495 KAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 539
		
		
SPs0961	SPs0977	Y	Y	N	SPs0946	SPs0985
	SPs0961	3	15	0.367142	dihydroneopterin aldolase
	SPs0962	2	15	-0.179499	2-amino-4-hydroxy-6-
	SPs0963	2	15	-0.441229	UDP-N-acetylenolpyruvoylglucosamine reductase
	SPs0964	1	17	-0.695768	sperimidine/putrescine ABC transporter
	SPs0965	2	16	-0.083124	spermidine/putrescine ABC transporter permease
	SPs0966	1	14	0.291863	spermidine/putrescine ABC transporter permease
	SPs0967	1	14	0.456778	spermidine/putrescine ABC transporter
	SPs0968	1	15	0.449509	two-component response regulator
	SPs0969	1	14	0.021108	two-component sensor histidine kinase
	SPs0970	2	16	-0.689509	L-malate permease
	SPs0971	2	18	-1.865689	NAD-dependent malic enzyme
	SPs0972	1	20	-3.873872	zinc-containing alcohol dehydrogenase
	SPs0973	2	22	-5.071056	acid phosphatase/phosphotransferase
	SPs0974	0	21	-4.668464	hypothetical protein
	SPs0975	0	21	-4.884917	hypothetical protein
	SPs0976	-1	17	-4.983354	hypothetical protein
	SPs0977	-2	16	-3.340265	hypothetical protein
	966#SPs0967	MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature.	37	1e-04
		>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature.
		          Length = 483
		
		 Score = 36.6 bits (84), Expect = 1e-04
		 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
		
		Query: 31  SGSQSDKLVIYNWGDYIDPALLKKFTKETGIEVQYETFDSNEAMYTKIKQGGTTYDIAVP 90
		           S   S   V+ N+  YI P LL++   +    + + T+ SNE +         TY +AV 
		Sbjct: 21  SSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGF--ANNTYSVAVA 76
		
		Query: 91  SDYTIDKMIKENLLNKLDKSKL 112
		           S Y + ++I+ +LL+ +D S+ 
		Sbjct: 77  STYAVSELIERDLLSPIDWSQF 98
		
		
	967#SPs0968	HTHFIS#FIS bacterial regulatory protein HTH signature.	66	8e-15
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 66.0 bits (161), Expect = 8e-15
		 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
		
		Query: 3   VLIIEDDPMVDFIHRNYLEKLNLFDRIISSDSMKAVQSILTDYVIDLILLDIHITDGNGI 62
		           +L+ +DD  +  +    L +      +  + +   +   +     DL++ D+ + D N  
		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 63  QFLEKWRAQHIPCEVIIISAANDGNIIRDGFHLGIIDYLIKPFTFERFQESIQQFVTHRE 122
		             L + +       V+++SA N           G  DYL KPF        I + +   +
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
		
		Query: 123 HLANQQLEQAQ 133
		              ++  + +Q
		Sbjct: 124 RRPSKLEDDSQ 134
		
		
SPs1058	SPs1073	Y	Y	N	SPs1043	SPs1082
	SPs1058	2	17	-0.895954	hypothetical protein
	SPs1059	-2	14	-1.230423	trimethylamine dehydrogenase
	SPs1060	-2	15	-1.716090	hypothetical protein
	SPs1061	-1	18	-2.044017	phosphopantothenate--cysteine ligase
	SPs1062	-2	19	-1.979231	phosphopantothenoylcysteine decarboxylase
	SPs1063	-3	20	-1.715094	hypothetical protein
	SPs1064	-3	22	-1.439491	phosphoglucomutase
	SPs1065	-2	19	-1.921746	sugar ABC transporter permease
	SPs1066	-3	20	-3.102274	sugar ABC transporter permease
	SPs1067	-3	20	-3.252935	sugar ABC transporter ATP-binding protein
	SPs1068	0	23	-4.978266	lipoprotein
	SPs1069	1	22	-6.391205	cytidine deaminase
	SPs1070	0	18	-5.013443	16S rRNA m(2)G 1207 methyltransferase
	SPs1071	1	18	-4.827475	pantothenate kinase
	SPs1072	0	16	-3.829632	30S ribosomal protein S20
	SPs1073	-1	14	-3.524887	histidine kinase
	1067#SPs1068	LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.	66	3e-14
		>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.
		          Length = 428
		
		 Score = 66.2 bits (161), Expect = 3e-14
		 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 45/299 (15%)
		
		Query: 36  DLKVAMVTDTGGVDDKSFNQSAWEGLQSWGKEMGLQKGTGFDYFQSTSESEYATNLDTAV 95
		            LK  ++TD G +DDKSFNQSA+E L++      + K TG +       S + +  ++A+
		Sbjct: 61  KLKPVLITDEGKIDDKSFNQSAFEALKA------INKQTGIEINNVEPSSNFESAYNSAL 114
		
		Query: 96  SGGYQLIYGIGFALKDAIAKAAGD------NEGVKFVIIDDIIEGKDNV-ASVTFADHEA 148
		           S G+++    GF  + +I +             +K + ID  IE +     S+ F   E+
		Sbjct: 115 SAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIKES 174
		
		Query: 149 AYLAGIAAAKITKTK-----TVGFVGGMEGTVITRFEKGFEAGVKS---------VDDTI 194
		           A+  G A A     +      V   GG     +T F +GF  G+           +  T 
		Sbjct: 175 AFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTS 234
		
		Query: 195 QVKVDYAGSFGDAAKGKTIAAAQYAAGADVIYQAAGG---TGAGVFNEAKAINEKRSEAD 251
		            VK+D +G          I     +  ADV Y         G   F   +  N+ +    
		Sbjct: 235 PVKLD-SGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQ---- 289
		
		Query: 252 KVWVIGVDRDQKDEGKYTSKDGKEANFVLASSIKEVGKAVQLINKQVADKKFPGGKTTV 310
		             +VIGVD DQ        +D      +L S +K + +AV      +  +K  G K  V
		Sbjct: 290 --YVIGVDSDQG-----MIQDKDR---ILTSVLKHIKQAVYETLLDLILEKEEGYKPYV 338
		
		
	1072#SPs1073	PF06580#Sensor histidine kinase	39	2e-05
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 39.1 bits (91), Expect = 2e-05
		 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
		
		Query: 312 YGKIFYFQNQVNRSLRMDKALLKQLITILFDNAIKY----TDKNGIIEIIVKTTDKNLLI 367
		           +     F+NQ+N ++  D  +   L+  L +N IK+      + G I +     +  + +
		Sbjct: 236 FEDRLQFENQINPAIM-DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294
		
		Query: 368 SVIDNGPGITDEEKK 382
		            V + G       K+
		Sbjct: 295 EVENTGSLALKNTKE 309
		
		
SPs1089	SPs1103	Y	Y	N	SPs1074	SPs1113
	SPs1089	2	15	-0.926662	hypothetical protein
	SPs1090	2	15	-0.984575	hypothetical protein
	SPs1091	2	17	-1.394927	hypothetical protein
	SPs1092	1	20	-3.108024	ABC transporter ATP-binding protein
	SPs1093	0	22	-4.814304	TetR/AcrR family transcriptional regulator
	SPs1094	-1	23	-5.559281	transcriptional regulator
	SPs1095	0	25	-4.611598	hypothetical protein
	SPs1096	-2	15	-0.947544	hypothetical protein
	SPs1097	-1	15	0.603077	hypothetical protein
	SPs1098	0	14	0.386642	hypothetical protein
	SPs1099	-1	13	0.180677	hypothetical protein
	SPs1100	-1	12	-0.064828	hypothetical protein
	SPs1101	-2	13	-0.135006	DNA helicase II
	SPs1102	0	15	-1.409536	Na(+)-linked D-alanine glycine permease
	SPs1103	-4	14	-3.009772	cation efflux system protein
	1091#SPs1092	PF05272#Virulence-associated E family protein	34	7e-04
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 33.5 bits (76), Expect = 7e-04
		 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
		
		Query: 36  KGELVVIL-GASGAGKSTVLNILGGMD-TVDAGQVIIDGKD 74
		           K +  V+L G  G GKST++N L G+D   D    I  GKD
		Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
		
		
	1092#SPs1093	HTHTETR#TetR bacterial regulatory protein HTH signature.	41	6e-07
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 41.2 bits (96), Expect = 6e-07
		 Identities = 13/48 (27%), Positives = 25/48 (52%)
		
		Query: 4  RHTETKAYVKTALTTLLTEQSFETLTVSDLTKKAGINRGTFYLHYTDK 51
		             ET+ ++      L ++Q   + ++ ++ K AG+ RG  Y H+ DK
		Sbjct: 8  EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
		
		
	1098#SPs1099	PF06580#Sensor histidine kinase	28	0.024
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 28.3 bits (63), Expect = 0.024
		 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 15/109 (13%)
		
		Query: 19  LVGLVLLSVFGWVVGITGGYIYLPYSYRWLSWGMDNFPNLLDSALSYYYFWTALVLFVIT 78
		           ++  + +S+ G V  +T  Y        WL   M                  A V+    
		Sbjct: 42  MIFNIAISLMGLV--LTHAYRSFIKRQGWLKLNMGQI---------ILRVLPACVVIG-- 88
		
		Query: 79  FLALLVIILYPRIYTEVQLRHKNKKGTLLLKKSAIESYVATAIQTAGLM 127
		            +  +      R+   +    K    TL L  S I + V      + L 
		Sbjct: 89  MVWFVANTSIWRLLAFIN--TKPVAFTLPLALSIIFNVVVVTFMWSLLY 135
		
		
SPs1113	SPs1173	Y	Y	Y	SPs1098	SPs1137
	SPs1113	-2	11	-3.152677	DNA polymerase III DnaE
	SPs1114	0	18	-5.721911	GntR family transcriptional regulator
	SPs1115	0	18	-5.580020	ABC transporter ATP-binding protein
	SPs1116	2	17	-3.670799	ABC transporter permease
	SPs1117	1	18	-2.529131	hypothetical protein
	SPs1118	-1	18	-1.712494	hypothetical protein
	SPs1119	0	19	-1.034676	hypothetical protein
	SPs1120	0	21	0.624827	hypothetical protein
	SPs1121	5	28	3.513596	hypothetical protein
	SPs1122	4	25	2.058571	phage associated holin
	SPs1123	4	25	2.216224	hypothetical protein
	SPs1124	3	24	1.819336	hypothetical protein
	SPs1125	2	17	1.177028	hypothetical protein
	SPs1126	2	16	1.187792	hypothetical protein
	SPs1127	0	15	0.217074	hyaluronidase
	SPs1128	0	15	0.272801	hypothetical protein
	SPs1129	1	16	-0.245320	hypothetical protein
	SPs1130	1	17	0.157880	tail protein
	SPs1131	0	22	-1.368781	hypothetical protein
	SPs1132	1	23	-1.308140	hypothetical protein
	SPs1133	4	20	-1.043844	major tail protein
	SPs1134	4	19	-1.381533	hypothetical protein
	SPs1135	2	19	-0.564985	hypothetical protein
	SPs1136	1	17	-1.712269	hypothetical protein
	SPs1137	0	16	-1.701802	hypothetical protein
	SPs1138	0	15	-1.914288	hypothetical protein
	SPs1139	0	16	-1.685049	hypothetical protein
	SPs1140	0	17	-1.958205	scaffolding protein
	SPs1141	0	18	-2.545284	hypothetical protein
	SPs1142	0	21	-2.683672	hypothetical protein
	SPs1143	3	30	-3.457102	hypothetical protein
	SPs1144	4	31	-3.681720	hypothetical protein
	SPs1145	3	23	-3.858213	hypothetical protein
	SPs1146	1	21	-3.785050	hypothetical protein
	SPs1147	2	23	-3.424927	hypothetical protein
	SPs1148	2	24	-2.675744	integrase/recombinase
	SPs1149	1	23	-2.219964	phage 31 late promoter transcriptional
	SPs1150	1	25	-2.000102	B-cell receptor associated protein-like protein
	SPs1151	2	30	-2.078311	repressor protein
	SPs1152	3	34	0.192511	hypothetical protein
	SPs1153	2	33	1.308529	hypothetical protein
	SPs1154	1	32	-0.329752	hypothetical protein
	SPs1155	4	28	0.227958	hypothetical protein
	SPs1156	3	27	0.269045	hypothetical protein
	SPs1157	2	27	-0.267841	GTP-binding protein
	SPs1158	2	19	-1.530622	hypothetical protein
	SPs1159	1	21	-2.964930	hypothetical protein
	SPs1160	3	19	-2.928739	DNA polymerase III delta prime subunit
	SPs1161	0	23	-5.407020	hypothetical protein
	SPs1162	-1	21	-4.963285	hypothetical protein
	SPs1163	0	21	-5.248486	phage associated antirepressor
	SPs1164	2	25	-6.903017	hypothetical protein
	SPs1165	1	24	-4.322903	hypothetical protein
	SPs1166	0	23	-3.843753	hypothetical protein
	SPs1167	0	20	-3.860383	hypothetical protein
	SPs1168	1	19	-4.957873	repressor protein
	SPs1169	0	20	-4.642495	hypothetical protein
	SPs1170	2	19	-4.309233	hypothetical protein
	SPs1171	2	14	-4.314867	hypothetical protein
	SPs1172	1	12	-4.158024	phage associated integrase
	SPs1173	0	13	-3.431416	hypothetical protein
	1118#SPs1119	BACTRLTOXIN#Bacterial toxin signature.	353	e-126
		>BACTRLTOXIN#Bacterial toxin signature.
		          Length = 266
		
		 Score =  353 bits (907), Expect = e-126
		 Identities = 149/261 (57%), Positives = 193/261 (73%), Gaps = 6/261 (2%)
		
		Query: 6   RILVVACVVFCAQLLSIS---VFASSQPDPTPEQLNKSSQFTGVMGNLRCLYDNHFVEGT 62
		           R+ +   ++  A +L IS   V A SQPDP P+ L+KSS+FTG MGN++ LYD+H+V  T
		Sbjct: 4   RLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSAT 63
		
		Query: 63  NVRSTGQLLQHDLIFPIKDLKLKNYDSVKTEFNSKDLAAKYKNKDVDIFGSNYYYNCYYS 122
		            V+S  + L HDLI+ I D KLKNYD VKTE  ++DLA KYK++ VD++GSNYY NCY+S
		Sbjct: 64  KVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFS 123
		
		Query: 123 EGNSCKNA--KKTCMYGGVTEHHRNQI-EGKFPNITVKVYEDNENILSFDITTNKKQVTV 179
		             ++       KTCMYGG+T+H  N    G   N+ V+VYE+  N +SF++ T+KK VT 
		Sbjct: 124 SKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTA 183
		
		Query: 180 QELDCKTRKILVSRKNLYEFNNSPYETGYIKFIESSGDSFWYDMMPAPGAIFDQSKYLML 239
		           QELD K R  L+++KNLYEFN+SPYETGYIKFIE++G++FWYDMMPAPG  FDQSKYLM+
		Sbjct: 184 QELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMM 243
		
		Query: 240 YNDNKTVSSSAIAIEVHLTKK 260
		           YNDNKTV S ++ IEVHLT K
		Sbjct: 244 YNDNKTVDSKSVKIEVHLTTK 264
		
		
	1123#SPs1124	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	32	0.002
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 32.0 bits (72), Expect = 0.002
		 Identities = 13/42 (30%), Positives = 22/42 (52%)
		
		Query: 64   TKYAVAESVQKVEELSLAQKEIEQNAEQAKVTAEAAEKQAKS 105
		            T+    +    VE+   A+ E E+  E  KVT++ + KQ +S
		Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136
		
		
	1126#SPs1127	PF07212#Hyaluronoglucosaminidase	385	e-138
		>PF07212#Hyaluronoglucosaminidase
		          Length = 336
		
		 Score =  385 bits (990), Expect = e-138
		 Identities = 168/235 (71%), Positives = 197/235 (83%), Gaps = 2/235 (0%)
		
		Query: 1   MSLAGGIVTGQLRLKPN-SGIEKSSSTGGAINIDMSKSKGAAMVMYTNKDTTDGPLMILR 59
		           ++L GG++TGQL+ KPN SGI+ SSS GGAINIDMSKS+GA +V+Y+N DT+DGPLM LR
		Sbjct: 100 LNLKGGVMTGQLQFKPNKSGIKPSSSVGGAINIDMSKSEGAGVVVYSNNDTSDGPLMSLR 159
		
		Query: 60  SNKDTFDQSVQFVDYRGKTNAVNIVMRQPPTPNFSSALNITSANEGGSAMQIRGVEKALG 119
		           + K+TF+QS  FVDY GKTNAVNI MRQP TPNFSSALNITS NE GSAMQIRGVEKALG
		Sbjct: 160 TGKETFNQSALFVDYSGKTNAVNIAMRQPTTPNFSSALNITSGNENGSAMQIRGVEKALG 219
		
		Query: 120 TLKITHENPSVDKEYDKNAAALSIDIVKKKKGGGDGTAAQGIFINSSSGTTGKLLRIRNK 179
		           TLKITHENP+V+  YD+NAAALSIDIVKK+K GG GTAAQGI+INS+SGTTGKLLRIRN 
		Sbjct: 220 TLKITHENPNVEANYDENAAALSIDIVKKQK-GGKGTAAQGIYINSTSGTTGKLLRIRNL 278
		
		Query: 180 NEDKFYVNPDGGFHSYADSIVDGNLTVKNPTSGKHAATKDYVDKKFDELKKLIQK 234
		            +DKFYV  DGGF++   S +DGNL +KNPT+  HAATK YVD +  +LK L+  
		Sbjct: 279 GDDKFYVKHDGGFYAKKTSQIDGNLKLKNPTADDHAATKAYVDSEVKKLKALLMD 333
		
		
	1132#SPs1133	PF06872#EspG protein	31	0.002
		>PF06872#EspG protein
		          Length = 398
		
		 Score = 31.2 bits (70), Expect = 0.002
		 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
		
		Query: 59  RGVGDVKMETEAIDIPFD---VLKKILGYKDGSSS 90
		           RG+G+ K+    +DIP D   +L+  LG KD +SS
		Sbjct: 208 RGLGNSKLSLNGVDIPADAQKLLRNTLGLKDTNSS 242
		
		
	1149#SPs1150	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	33	0.002
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 32.7 bits (74), Expect = 0.002
		 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 21/150 (14%)
		
		Query: 134  KAAVQRAVEQVTVNYDIYEALGSKRNELYAEIEKSLSERLAKESIELVSVTLTDQDAGDE 193
		             A V  A            A  S+  E  AE  K  S+ + K   +    T  +++   E
		Sbjct: 1017 IARVDEAPVP-----PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKE 1071
		
		Query: 194  -----------IEKAIKDESVKQKQVDSAKQ-----DKEKAKIEAETKQIQAQAEADAQV 237
		                        E A      K+ Q    K+      +EKAK+E E  Q   +  +    
		Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131
		
		Query: 238  IKAKGEAESNNTKAASITDNLIKMKEAEAR 267
		             + + E      + A   D  + +KE +++
		Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161
		
		
	1152#SPs1153	PF06580#Sensor histidine kinase	25	0.048
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 25.2 bits (55), Expect = 0.048
		 Identities = 7/45 (15%), Positives = 18/45 (40%)
		
		Query: 29  LFLAIAIFGIMVTVSYFSYRDAQQYYEPQITGLRTQLSRTQKQLK 73
		           +   + +   M ++ YF +   + Y + +I   +      + QL 
		Sbjct: 120 IIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLM 164
		
		
SPs1280	SPs1293	Y	Y	N	SPs1265	SPs1304
	SPs1280	-1	14	-3.205610	tRNA (guanine-N(1)-)-methyltransferase
	SPs1281	-1	14	-3.940454	16S rRNA-processing protein RimM
	SPs1282	-1	15	-4.002849	hypothetical protein
	SPs1283	-1	17	-4.494953	cation efflux system membrane protein
	SPs1284	-1	16	-4.228659	hypothetical protein
	SPs1285	-1	17	-4.292524	hypothetical protein
	SPs1286	-1	19	-4.529781	RNA binding protein
	SPs1287	-2	18	-3.255558	30S ribosomal protein S16
	SPs1288	-3	17	-2.851353	glycerophosphodiester phosphodiesterase
	SPs1289	-3	15	-1.532005	ABC transporter permease
	SPs1290	-2	15	-1.077846	ABC transporter ATP-binding protein
	SPs1291	-2	14	-0.619505	hypothetical protein
	SPs1292	-1	13	0.077152	carbamoyl phosphate synthase large subunit
	SPs1293	2	15	0.557294	carbamoyl phosphate synthase small subunit
	1281#SPs1282	HTHTETR#TetR bacterial regulatory protein HTH signature.	48	2e-09
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 48.5 bits (115), Expect = 2e-09
		 Identities = 13/64 (20%), Positives = 30/64 (46%)
		
		Query: 5  RQIKKTKTAIYSAFIALLQKKEYSKITVRDMITLANVGRSTFYAHYESKEMLQKELCEEL 64
		          ++ ++T+  I    + L  ++  S  ++ ++   A V R   Y H++ K  L  E+ E  
		Sbjct: 7  QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66
		
		Query: 65 FHHL 68
		            ++
		Sbjct: 67 ESNI 70
		
		
	1290#SPs1291	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	44	5e-07
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 44.4 bits (105), Expect = 5e-07
		 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
		
		Query: 170 QQLQDLNDAYADAQAEVNKAQIALNDTVVISSVSGTVVE-----VNNDIDPSSKNSQTLV 224
		            +L+   D       E+ K +     +V+ + VS  V +         +      ++TL+
		Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT----AETLM 357
		
		Query: 225 HVATEGQ-LQVKGTLTEYDLANVKVGQSVKIKSKVYSNQEW---TGKISYVS 272
		            +  E   L+V   +   D+  + VGQ+  IK + +    +    GK+  ++
		Sbjct: 358 VIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
		
		
		
		 Score = 37.5 bits (87), Expect = 9e-05
		 Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 29/185 (15%)
		
		Query: 21  ITLVLIITGVVLWKQQQNTLTADIAKEPYSTVSVTEGSIASSTLFSGTVKALSEEYIYFD 80
		             ++  +    +         + +       V+   G +  S   S  +K +    +   
		Sbjct: 62  YFIMGFLVIAFIL--------SVLG--QVEIVATANGKLTHSG-RSKEIKPIENSIV--- 107
		
		Query: 81  ANKGNDATVTVKVGDQVTQGQQLVQYNTTTA-------QSAYDTAVRSLNKIGRQINHLK 133
		                   + VK G+ V +G  L++     A       QS+   A     +       ++
		Sbjct: 108 ------KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161
		
		Query: 134 TYGVPAV--STETNKDEATGEETTTTVQPSAQQNANYKQQLQDLNDAYADAQAEVNKAQI 191
		              +P +    E      + EE         +Q + ++ Q           +AE      
		Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221
		
		Query: 192 ALNDT 196
		            +N  
		Sbjct: 222 RINRY 226
		
		
SPs1314	SPs1327	Y	N	N	SPs1299	SPs1338
	SPs1314	3	23	0.265232	50S ribosomal protein L20
	SPs1315	-1	20	-1.469123	50S ribosomal protein L35
	SPs1316	-1	16	-1.279650	translation initiation factor IF-3
	SPs1317	1	16	-3.850287	cytidylate kinase
	SPs1318	2	18	-5.799474	hypothetical protein
	SPs1319	2	17	-6.650097	ferredoxin
	SPs1320	1	18	-6.377188	pore-forming peptide
	SPs1321	1	20	-6.598408	peptidase T
	SPs1322	0	22	-7.806309	hypothetical protein
	SPs1323	-1	22	-7.408594	hypothetical protein
	SPs1324	-1	20	-6.522517	hypothetical protein
	SPs1325	-2	20	-6.147054	glycosyl transferase
	SPs1326	-2	18	-5.911476	hypothetical protein
	SPs1327	-3	16	-4.451598	hypothetical protein
SPs1364	SPs1376	Y	Y	N	SPs1349	SPs1388
	SPs1364	-1	15	-3.891377	hypothetical protein
	SPs1365	-1	15	-3.854584	hypothetical protein
	SPs1366	0	20	-4.869655	ABC transporter ATP-binding protein
	SPs1367	-1	21	-4.379078	ABC transporter ATP-binding protein
	SPs1368	0	19	-4.067830	ABC transporter ATP-binding protein
	SPs1369	1	20	-4.078284	hypothetical protein
	SPs1370	0	17	-2.499278	hypothetical protein
	SPs1371	1	18	-2.251796	hypothetical protein
	SPs1372	2	15	-2.024495	streptolysin S associated ORF
	SPs1373	1	15	-0.928021	streptolysin S associated ORF
	SPs1374	2	16	-0.285197	streptolysin S associated protein
	SPs1375	2	15	-0.349369	phosphopyruvate hydratase
	SPs1376	2	11	-0.715687	hypothetical protein
	1365#SPs1366	LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.	30	0.012
		>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.
		          Length = 428
		
		 Score = 30.4 bits (68), Expect = 0.012
		 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
		
		Query: 15  KKTSYVTFFLMPILTTLLALSLSFSNNNQAKIGILDKDNSQISKQFIAQLKQNKKYDIFT 74
		           KK+  +   L PI   L A+++S  NN+++ I   +KD S+ +       +  K  ++  
		Sbjct: 2   KKSKKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYTTTNANGKQVVKNAELLK 61
		
		Query: 75  KIKKEHI--DHYLQDKSL-----EAVLTIDKGFS-DKVLQGKSQKL--NIRSIANSEITE 124
		            +K   I  +  + DKS      EA+  I+K    +      S        S  ++    
		Sbjct: 62  -LKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSSNFESAYNSALSAGHKI 120
		
		Query: 125 WV 126
		           WV
		Sbjct: 121 WV 122
		
		
	1368#SPs1369	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	31	0.004
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score = 30.9 bits (70), Expect = 0.004
		 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
		
		Query: 37  SYQDFLDVLLSLFQFVVIILVLFFYSATINLGEVLTFLTQTSWHWQILCYLVLYLMAIIE 96
		           S +  ++ L S+ + V++ ++++      NL  +L   T        L   +L  + +I 
		Sbjct: 133 SIKSLVEFLKSILKVVLLSILIWII-IKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191
		
		Query: 97  MTLLVLILIFDVLLQK 112
		               V+I I D   + 
		Sbjct: 192 TVGFVVISIADYAFEY 207
		
		
SPs1456	SPs1482	Y	Y	N	SPs1441	SPs1480
	SPs1456	2	26	-2.509689	hypothetical protein
	SPs1457	2	25	-2.418141	hypothetical protein
	SPs1458	3	22	-2.500497	hypothetical protein
	SPs1459	3	20	-1.649573	hypothetical protein
	SPs1460	4	21	-1.528908	hypothetical protein
	SPs1461	4	21	-1.982014	hypothetical protein
	SPs1462	2	17	-4.022761	hypothetical protein
	SPs1463	3	19	-6.307853	hypothetical protein
	SPs1464	3	19	-7.195867	hypothetical protein
	SPs1465	2	25	-8.987008	hypothetical protein
	SPs1466	3	27	-9.568878	hypothetical protein
	SPs1467	3	26	-9.461577	efflux protein
	SPs1468	3	25	-8.988310	UDP-glucose 6-dehydrogenase
	SPs1469	3	28	-9.564979	hypothetical protein
	SPs1470	4	29	-9.641541	hypothetical protein
	SPs1471	4	25	-9.110259	S-adenosylmethionine synthetase
	SPs1472	1	19	-6.091540	hypothetical protein
	SPs1473	1	18	-5.390451	hypothetical protein
	SPs1474	1	16	-5.001125	hypothetical protein
	SPs1475	0	14	-3.597055	shikimate 5-dehydrogenase
	SPs1476	0	12	-2.378935	positive regulator
	SPs1477	1	13	-1.810380	chromosome segregation SMC protein
	SPs1478	-2	12	-1.383290	ribonuclease III
	SPs1479	0	13	-0.128326	hypothetical protein
	SPs1480	-1	12	0.117757	two-component sensor histidine kinase
	SPs1481	1	14	0.362681	two-component response regulator
	SPs1482	2	16	0.488101	hypothetical protein
	1463#SPs1464	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	32	0.004
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 32.3 bits (73), Expect = 0.004
		 Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 22/225 (9%)
		
		Query: 171 NLYDNIARYKERLKDKSDQLTTFRNARKYAFISNLVGGKKQFEANVSEIKRLEYDLAHLQ 230
		               ++ +  E   + S   +  +     A  + L   + + E  +          +   
		Sbjct: 225 ARKADLEKALEGAMNFSTADSA-KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283
		
		Query: 231 DTHQDKIDSDDIEKNQQKLQLRNTKLELESSLRD------KQRRLKLLDISIEFGLYPTE 284
		            T + +  + + EK   + Q +      +S  RD       +++L+     +E     +E
		Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE 343
		
		Query: 285 SDLTELQQYFPDTNLKKLYEVEAYHKKLETIL------------DSEFSTE-RESLIAEI 331
		           +    L++   D + +   ++EA H+KLE               D + S E ++ +   +
		Sbjct: 344 ASRQSLRRDL-DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKAL 402
		
		Query: 332 DDLESQLTTLNQELQELGNIPNLS-SEYLENYSKLTATINALKEQ 375
		           ++  S+L  L +  +EL     L+  E  E  +KL A   ALKE+
		Sbjct: 403 EEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447
		
		
	1464#SPs1465	PF05043#Transcriptional activator	26	0.033
		>PF05043#Transcriptional activator
		          Length = 493
		
		 Score = 25.7 bits (56), Expect = 0.033
		 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
		
		Query: 10  YLTNLPALAHDSLLLSN----VSYQAT-----EALLKLYDQSRSLNKQVFLAFDKASSYS 60
		            L+++ +   D +  S+                     +  S   +   F+ F++     
		Sbjct: 45  DLSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAE 104
		
		Query: 61  PDANQL-LSENTVLRLSSNGNE 81
		               +  +S +++ R+ S  N+
		Sbjct: 105 SICKEFYISSSSLYRIISQINK 126
		
		
	1466#SPs1467	TCRTETA#Tetracycline resistance protein signature.	38	6e-05
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 37.9 bits (88), Expect = 6e-05
		 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
		
		Query: 52  SVIGVLFNLFGGVIADSFKR----KKIIITTNILCGTACLVLSFLTKEQWLVYAIVLTNV 107
		           +  G+L +L   +I          ++ ++   I  GT  ++L+F T   W+ + I+   V
		Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT-RGWMAFPIM---V 308
		
		Query: 108 ILAFMSAFSSPSYKAFTKEIVKKDGISQLNSLLETTSTVIKVTVPMVAIFLYKLLGIHGV 167
		           +LA       P+ +A     V ++   QL   L   +++  +  P++   +Y       +
		Sbjct: 309 LLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA----ASI 363
		
		Query: 168 LLLDGLSFLIAALLISFILPV 188
		              +G +++  A L    LP 
		Sbjct: 364 TTWNGWAWIAGAALYLLCLPA 384
		
		
	1476#SPs1477	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	48	2e-07
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 47.8 bits (113), Expect = 2e-07
		 Identities = 47/313 (15%), Positives = 94/313 (30%), Gaps = 10/313 (3%)
		
		Query: 209 AKVAKQFLELDANRKQLQLDILVKDIDIAQERQTKDTEALAVLQQDLASYYAKRQSMEED 268
		           + VA +       + Q + D    + +  + + +  +     L+        +  + +E 
		Sbjct: 41  SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100
		
		Query: 269 YQKFKQKKQVLSQESDQTQTTLLELTKLIADLEKQIELVKLESGQ---EAEKKAEAKKHL 325
		            +K  +     + +  + +    +L K +            +      E    A  K  L
		Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160
		
		Query: 326 EQLQEQLDGFQAEEKQRTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEF 385
		           E+  E    F   +  + + L      L   + +L +       FS+     ++TL  E 
		Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220
		
		Query: 386 VLLMQKEAALSNQLTALKAHLDKEKQARQHKAQEYQLLVTKLDQLNDESQKAQAHYKAQK 445
		             L  ++A L   L         +    +    E   L  +  +L    + A     A  
		Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280
		
		Query: 446 EQVEMLLQNYQEGDKRVQELERDYQLNQERLFDLLDQ-------KKGKEARKASLESIQK 498
		            +++ L       +    +LE   Q+       L          KK  EA    LE   K
		Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340
		
		Query: 499 SHSQFYAGVRAVL 511
		                   +R  L
		Sbjct: 341 ISEASRQSLRRDL 353
		
		
		
		 Score = 30.4 bits (68), Expect = 0.049
		 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 18/243 (7%)
		
		Query: 169 KYKTRKKETQIKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLD 228
		             +   +            +  LE     L+ + A LEK  + A  F          ++ 
		Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA----DSAKIK 284
		
		Query: 229 ILVKDIDIAQERQTKDTEALAVLQ-------QDLASYYAKRQSMEEDYQKFKQKKQVLSQ 281
		            L  +    +  +        VL        +DL +    ++ +E ++QK +++ ++   
		Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344
		
		Query: 282 ESDQTQTTLLELTKLIADLEKQIELVKLESGQEAEKKAEAKKHLEQLQEQLDGFQAEEKQ 341
		                +  L    +    LE + + ++       E+   ++   + L+  LD  +  +KQ
		Sbjct: 345 SRQSLRRDLDASREAKKQLEAEHQKLE-------EQNKISEASRQSLRRDLDASREAKKQ 397
		
		Query: 342 RTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEFVLLMQKEAALSNQLTA 401
		             + L   + +L  +++   EL  + +    +  +L   L  E   L +K A  + +L  
		Sbjct: 398 VEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAK 457
		
		Query: 402 LKA 404
		           L+A
		Sbjct: 458 LRA 460
		
		
	1479#SPs1480	PF06580#Sensor histidine kinase	41	8e-06
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score = 40.6 bits (95), Expect = 8e-06
		 Identities = 29/188 (15%), Positives = 70/188 (37%), Gaps = 35/188 (18%)
		
		Query: 253 DETNRMMRMISDLL--NLSRIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVY 310
		            +   M+  +S+L+  +L   + +   LA E+T   +++     +F   +++     ++ 
		Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF---EDRLQFENQIN 247
		
		Query: 311 EIVRDYPITSVWIEIDNDKMTQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQG 370
		             + D  +  + ++        ++EN + + I   P GGKI ++    +  + + + + G
		Sbjct: 248 PAIMDVQVPPMLVQT-------LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300
		
		Query: 371 LGIPKTDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQ---QHHGFIWAKSDYGKG 427
		               K                    +  TG GL   +E ++         I      GK 
		Sbjct: 301 SLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQ-IKLSEKQGKV 341
		
		Query: 428 STFTIVLP 435
		               +++P
		Sbjct: 342 -NAMVLIP 348
		
		
	1480#SPs1481	HTHFIS#FIS bacterial regulatory protein HTH signature.	92	1e-23
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 91.8 bits (228), Expect = 1e-23
		 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
		
		Query: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62
		            IL+ DD+  I  ++   L++ GYD+    +             DL++ D+++P+ +  +
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 63  VAKEIRKT-SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121
		           +   I+K    +P++++SA+++    +   E GA DY+ KPF   EL+  +   L   + 
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
		
		Query: 122 IETAVAEENASSG 134
		             + + +++    
		Sbjct: 125 RPSKLEDDSQDGM 137
		
		
SPs1509	SPs1514	Y	N	N	SPs1494	SPs1533
	SPs1509	5	19	-1.309473	hypothetical protein
	SPs1510	4	20	-1.194214	hypothetical protein
	SPs1511	4	23	-0.943233	hypothetical protein
	SPs1512	6	24	-0.753309	hypothetical protein
	SPs1513	7	32	-5.231994	hypothetical protein
	SPs1514	4	28	-1.167549	hypothetical protein
SPs1543	SPs1564	Y	Y	N	SPs1528	SPs1567
	SPs1543	-1	16	3.055946	hypothetical protein
	SPs1544	-1	16	3.350719	hypothetical protein
	SPs1545	-2	14	2.717372	bifunctional N-acetylglucosamine-1-phosphate
	SPs1546	-1	17	2.637359	glycerol-3-phosphate transporter
	SPs1547	-2	20	2.376344	NAD-dependent oxidoreductase
	SPs1548	-2	25	4.835520	3-ketoacyl-ACP reductase
	SPs1549	-1	28	5.630988	hypothetical protein
	SPs1550	0	28	5.417076	hypothetical protein
	SPs1551	-1	30	6.212024	hypothetical protein
	SPs1552	-2	26	5.778328	hypothetical protein
	SPs1553	-2	27	5.548153	hypothetical protein
	SPs1554	-1	21	3.781929	ribonucleotide-diphosphate reductase subunit
	SPs1555	0	18	3.107167	ribonucleotide reductase stimulatory protein
	SPs1556	-1	17	3.167434	ribonucleotide-diphosphate reductase subunit
	SPs1557	-1	17	3.013001	methionyl-tRNA synthetase
	SPs1558	-1	16	2.786412	hypothetical protein
	SPs1559	-1	16	2.633268	cell envelope proteinase
	SPs1560	-2	16	2.876693	L-lactate oxidase
	SPs1561	-1	18	2.018676	3'-exo-deoxyribonuclease
	SPs1562	0	19	1.241930	arsenate reductase
	SPs1563	0	18	1.185900	hypothetical protein
	SPs1564	2	17	-0.300956	hypothetical protein
	1545#SPs1546	TCRTETB#Tetracycline resistance protein TetB signature.	41	6e-06
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 41.4 bits (97), Expect = 6e-06
		 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
		
		Query: 66  LTVSYGLAKFYMGALGDRVSLRKLFSISLGASALICILIGFFNSSMVVLGILLVLCGVVQ 125
		           LT S G A    G L D++ +++L    +  +    + IGF   S   L I+        
		Sbjct: 60  LTFSIGTA--VYGKLSDQLGIKRLLLFGIIINCFGSV-IGFVGHSFFSLLIMARFIQGAG 116
		
		Query: 126 GALAPA-SQAMIANYFPNKTRGGAIAGWNISQNMGSALLPL 165
		            A  PA    ++A Y P + RG A         MG  + P 
		Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157
		
		
	1547#SPs1548	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	99	3e-27
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 99.0 bits (246), Expect = 3e-27
		 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
		
		Query: 3   KVVLVTGCASGIGYAQARYFLRQGHHVYGVDKSDKPDLNGNFHFIKLDLSSELSPL---- 58
		           K+  +TG A GIG A AR    QG H+  VD + +               +E  P     
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68
		
		Query: 59  -----------FKVVPSVDILCNTAGILDAYKPLLDVSDEEVEHLFDINFFATVKLTRHY 107
		                       + +  +DIL N AG+L     +  +SDEE E  F +N       +R  
		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNASRSV 127
		
		Query: 108 LRRMVEKQSGVIINMCSIASFIAGGGGVAYTSSKHALAGFTRQLALDYAKDQIHIFGIAP 167
		            + M++++SG I+ + S  + +      AY SSK A   FT+ L L+ A+  I    ++P
		Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187
		
		Query: 168 GAVKTAM-----TASDFEP---GGLADWVARETPIGRWTEPDEVAELTGFLASGKARSMQ 219
		           G+ +T M        +       G  +      P+ +  +P ++A+   FL SG+A  + 
		Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247
		
		Query: 220 GEIVKIDGGWTL 231
		              + +DGG TL
		Sbjct: 248 MHNLCVDGGATL 259
		
		
	1549#SPs1550	INTIMIN#Intimin signature.	27	0.042
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 27.3 bits (60), Expect = 0.042
		 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
		
		Query: 65  NGVKQSYPGEKEIKIINPSTQEVTRCYRISGWRADSQGSYTVTLDSPLQETDVVSLQIAD 124
		           NGV Q+         I   T  ++     +    +  G  TVTL S      VVS + A+
		Sbjct: 587 NGVAQA--NVPVSFNIVSGTAVLSA----NSANTNGSGKATVTLKSDKPGQVVVSAKTAE 640
		
		
	1552#SPs1553	BINARYTOXINA#Clostridial binary toxin A signature.	38	1e-05
		>BINARYTOXINA#Clostridial binary toxin A signature.
		          Length = 454
		
		 Score = 38.5 bits (89), Expect = 1e-05
		 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
		
		Query: 81  INTSLDKAKGKLSQLTPELRDQVAQLDAATHRLVIPWNIVVYRYVYETFLRDIGVSHADL 140
		           IN  L  + G L+   PEL  +V  ++ A     IP N++VYR          G     L
		Sbjct: 295 INNYL-ISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRS--------GPQEFGL 345
		
		Query: 141 TSYYRNHQFDPHILCKIK---------LGTRYTKHSFMSTT--ALKNGAMTHRPVEVRIC 189
		           T     + F+     KI+          G   T  +F+ST+  ++   A   R + +RI 
		Sbjct: 346 TLTSPEYDFN-----KIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRIN 400
		
		Query: 190 VKKGAKAAFVEPYSAVPSEVELLFPRGCQLEV--VGAYVSQDHKKLHIEA 237
		           + K +  A++        E E+L   G + ++  V +Y      KL ++A
		Sbjct: 401 IPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDA 450
		
		
	1558#SPs1559	SUBTILISIN#Subtilisin serine protease family (S8) signature.	92	5e-22
		>SUBTILISIN#Subtilisin serine protease family (S8) signature.
		          Length = 326
		
		 Score = 92.2 bits (229), Expect = 5e-22
		 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
		
		Query: 240 DIDWTQTDDDTKYESHGMHVTGIVAGNSKEAAATGERFLGIAPEAQVMFMRVFANDVMGS 299
		           + D     D      HG HV G +A             +G+APEA ++ ++V      G 
		Sbjct: 74  EGDPEIFKDY---NGHGTHVAGTIAAT-----ENENGVVGVAPEADLLIIKVLNKQGSGQ 125
		
		Query: 300 AESLFIKAIEDAVALGADVINLSLGTANGAQLSGSKPLMEAIEKAKKAGVSVVVAAGNER 359
		            + + I+ I  A+    D+I++SLG            L EA++KA  + + V+ AAGNE 
		Sbjct: 126 YDWI-IQGIYYAIEQKVDIISMSLGGP-----EDVPELHEAVKKAVASQILVMCAAGNEG 179
		
		Query: 360 VYGSDHDDPLATNPDYGLVGSPSTGRTPTSVAAINSKWVI 399
		                 D+          +G P       SV AIN     
		Sbjct: 180 DGDDRTDE----------LGYPGCYNEVISVGAINFDRHA 209
		
		
		
		 Score = 78.7 bits (194), Expect = 2e-17
		 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 18/147 (12%)
		
		Query: 537 FDSVVSKAPSQKGNEMNHFSNWGLTSDGYLKPDITAPGGDIYSTYNDNHYGSQTGTSMAS 596
		           ++ V+S          + FSN         + D+ APG DI ST     Y + +GTSMA+
		Sbjct: 194 YNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSMAT 247
		
		Query: 597 PQIAGASLLVKQ-YLEKTQPNLPKEKIADIVKNLLMSNAQIHVNPETKTTTSPRQQGAGL 655
		           P +AGA  L+KQ      + +L        +   L+               SP+ +G GL
		Sbjct: 248 PHVAGALALIKQLANASFERDL----TEPELYAQLIKRT-------IPLGNSPKMEGNGL 296
		
		Query: 656 LNIDGAVTSGLYVTGKDNYGSISLGNI 682
		           L +            +   G +S  ++
		Sbjct: 297 LYLTAVEELSRIFDTQRVAGILSTASL 323
		
		
		
		 Score = 40.6 bits (95), Expect = 4e-05
		 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
		
		Query: 103 HDWVKTKGAWDKGYKGQGKVVAVIDTGIDPAHQS 136
		            + ++    W++   G+G  VAV+DTG D  H  
		Sbjct: 26  VEMIQAPAVWNQTR-GRGVKVAVLDTGCDADHPD 58
		
		
SPs1641	SPs1662	Y	Y	Y	SPs1625	SPs1665
	SPs1641	1	15	-3.231974	***hypothetical protein
	SPs1642	1	16	-4.571575	type I site-specific deoxyribonuclease
	SPs1643	4	20	-6.582102	type I site-specific deoxyribonuclease
	SPs1644	4	20	-7.417991	type I site-specific deoxyribonuclease
	SPs1645	5	24	-8.398118	salivaricin regulon response regulator
	SPs1646	4	20	-7.180416	SalK
	SPs1647	1	17	-5.335307	ABC transporter permease
	SPs1648	0	15	-4.522081	ABC transporter ATP-binding protein
	SPs1649	-1	17	-3.875678	salivaricin A modification enzyme (amino acid
	SPs1650	0	24	-1.386252	lantibiotic
	SPs1651	0	25	-1.393610	6-phospho-beta-galactosidase
	SPs1652	1	27	-1.383942	PTS system lactose-specific transporter subunit
	SPs1653	1	22	-2.532905	PTS system lactose-specific transporter subunit
	SPs1654	1	21	-2.765501	tagatose 1,6-diphosphate aldolase
	SPs1655	0	19	-3.454892	tagatose-6-phosphate kinase
	SPs1656	0	19	-3.112936	galactose-6-phosphate isomerase subunit LacB
	SPs1657	2	16	-2.725741	galactose-6-phosphate isomerase subunit LacA
	SPs1658	2	18	-2.963692	lactose phosphotransferase system repressor
	SPs1659	2	27	-0.094811	DNA-damage-inducible protein J
	SPs1660	2	35	1.190369	hypothetical protein
	SPs1661	4	34	2.550834	degenerate integrase
	SPs1662	2	29	2.250494	degenerate integrase
	1643#SPs1645	HTHFIS#FIS bacterial regulatory protein HTH signature.	46	3e-08
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 46.0 bits (109), Expect = 3e-08
		 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
		
		Query: 2   KILLIDDHRLFAKSIQLLFQQYD-EVDVIDTITSHFNDVTIDLSKYDIILLDINLTNISK 60
		            IL+ DD       +     +   +V +     + +  +       D+++ D+ +     
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVM---PD 59
		
		Query: 61  ENGLEIAKELIQSTPHLKVVMLTGYVKSIYRERAKKVGAYGFVDKNIDPKQLISILKK 118
		           EN  ++   + ++ P L V++++     +   +A + GAY ++ K  D  +LI I+ +
		Sbjct: 60  ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
		
		
	1656#SPs1658	ARGREPRESSOR#Bacterial arginine repressor signature.	30	0.006
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score = 29.8 bits (67), Expect = 0.006
		 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
		
		Query: 1  MKKKERHEKILDILKVDGFIKVKDIIDEM-----NISDMTARRDLDTLADKGLL-IRTHG 54
		          M K +RH KI +I+  +      +++D +     N++  T  RD+  L    L+ + T+ 
		Sbjct: 1  MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKVPTNN 57
		
		Query: 55 GAQYLDYSSAKDEGHEKTHTEKKVL 79
		          G+    YS   D+        K+ L
		Sbjct: 58 GSYK--YSLPADQRFNPLSKLKRSL 80
		
		
SPs1675	SPs1710	Y	Y	N	SPs1660	SPs1699
	SPs1675	0	17	3.819585	hypothetical protein
	SPs1676	0	17	3.710112	serine acetyltransferase
	SPs1677	-1	16	3.053558	hypothetical protein
	SPs1678	-1	17	3.256829	polynucleotide phosphorylase
	SPs1679	-1	16	2.358334	translaldolase
	SPs1680	-2	18	2.400137	PTS system ascorbate-specific transporter
	SPs1681	-2	17	1.185176	hypothetical protein
	SPs1682	-1	17	1.636693	hypothetical protein
	SPs1683	-1	17	1.550261	30S ribosomal protein S15
	SPs1684	-2	17	3.254263	hypothetical protein
	SPs1685	-2	16	3.555436	hypothetical protein
	SPs1686	-2	14	3.291807	peptide deformylase
	SPs1687	-1	14	3.136304	hypothetical protein
	SPs1688	0	15	3.003762	MarR family transcriptional regulator
	SPs1689	0	15	2.981742	DNA polymerase III PolC
	SPs1690	-1	14	2.205384	prolyl-tRNA synthetase
	SPs1691	-2	13	2.558892	hypothetical protein
	SPs1692	-2	14	3.168407	phosphatidate cytidylyltransferase
	SPs1693	-2	16	3.573559	undecaprenyl pyrophosphate synthase
	SPs1694	-2	17	3.974793	preprotein translocase subunit YajC
	SPs1695	-2	16	3.612992	hypothetical protein
	SPs1696	-2	16	3.584677	pullulanase
	SPs1697	-2	20	3.837253	dextran glucosidase
	SPs1698	-1	20	3.904066	multiple sugar-binding ABC transporter
	SPs1699	-2	21	4.057779	leucine-rich protein
	SPs1700	-2	19	3.659036	streptokinase A
	SPs1701	-1	25	5.315017	D-tyrosyl-tRNA(Tyr) deacylase
	SPs1702	-2	25	5.020008	(p)ppGpp synthetase
	SPs1703	-1	21	5.273056	hypothetical protein
	SPs1704	-1	20	4.904540	SclA protein
	SPs1705	0	19	4.878912	hypothetical protein
	SPs1706	-1	18	4.649233	flavoprotein NrdI
	SPs1707	-1	17	4.557914	hypothetical protein
	SPs1708	-1	18	4.904512	PTS system glucose-specific transporter subunit
	SPs1709	-1	20	4.516924	16S ribosomal RNA methyltransferase RsmE
	SPs1710	-1	21	4.045666	ribosomal protein L11 methyltransferase
	1689#SPs1691	PF04605#Virulence-associated protein D (VapD)	30	0.008
		>PF04605#Virulence-associated protein D (VapD)
		          Length = 125
		
		 Score = 29.8 bits (67), Expect = 0.008
		 Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
		
		Query: 227 INGYKVNSWNDLTEAV-NLATRD-LGPSQTIKVTYKSHQRLKTV 268
		            +  ++     L E + +L  +D     +        +Q+LK +
		Sbjct: 80  FDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDL 123
		
		
	1696#SPs1698	PF05272#Virulence-associated E family protein	35	6e-04
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 34.7 bits (79), Expect = 6e-04
		 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
		
		Query: 34  IVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALY 89
		           +V  G  G GKST +  + GL+  S+    IG           +D          Y
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
		
		
	1697#SPs1699	HTHFIS#FIS bacterial regulatory protein HTH signature.	34	6e-04
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 34.0 bits (78), Expect = 6e-04
		 Identities = 10/30 (33%), Positives = 19/30 (63%)
		
		Query: 243 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 272
		           AL +  GN ++ A  L ++RN+L+ K+ + 
		Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIREL 473
		
		
	1698#SPs1700	STREPKINASE#Streptococcus streptokinase protein signature.	801	0.0
		>STREPKINASE#Streptococcus streptokinase protein signature.
		          Length = 440
		
		 Score =  801 bits (2069), Expect = 0.0
		 Identities = 392/440 (89%), Positives = 409/440 (92%)
		
		Query: 1   MKNYLSIGVIALLFALTFGTVKPVHAIAGYGWLPDRPPVNNSQLVVSMAGIVEGTDKKVF 60
		           MKNYLS G+ ALLFALTFGTV  V AIAG  WL DRP VNNSQLVVS+AG VEGT++ + 
		Sbjct: 1   MKNYLSFGMFALLFALTFGTVNSVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQDIS 60
		
		Query: 61  INFFEIDLTSQHAHGGKTEQGLSPKSKPFATDNGAMPHKLEKADLLKAIQKQLIANVHSN 120
		           + FFEIDLTS+ AHGGKTEQGLSPKSKPFATD+GAM HKLEKADLLKAIQ+QLIANVHSN
		Sbjct: 61  LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMSHKLEKADLLKAIQEQLIANVHSN 120
		
		Query: 121 DGYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPVQNQ 180
		           D YFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKP+QNQ
		Sbjct: 121 DDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQ 180
		
		Query: 181 AKSVDVKYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGY 240
		           AKSVDV+YTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNK HPGY
		Sbjct: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGY 240
		
		Query: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKDREQAYGINKKSGLNEEINNTDLISEKY 300
		           TIYERDSSIVTHDNDIFRTILPMDQEFTYRVK+REQAY INKKSGLNEEINNTDLISEKY
		Sbjct: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQAYRINKKSGLNEEINNTDLISEKY 300
		
		Query: 301 YILKKGESPYDPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPCDKAK 360
		           Y+LKKGE PYDPFDRSHLKLFTIKYVDV+TNELLKSEQLLTASERNLDFRDLYDP DKAK
		Sbjct: 301 YVLKKGEKPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360
		
		Query: 361 LLYNNLDAFDIMDYTLTGKVEDNHDKNNRIVTVYMGKRPKGAKGSYHLAYDKDLYTEEER 420
		           LLYNNLDAF IMDYTLTGKVEDNHD  NRI+TVYMGKRP+G   SYHLAYDKD YTEEER
		Sbjct: 361 LLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420
		
		Query: 421 KAYSYLRDTETPIPDNPKDK 440
		           + YSYLR T TPIPDNP DK
		Sbjct: 421 EVYSYLRYTGTPIPDNPNDK 440
		
		
	1701#SPs1703	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	57	3e-13
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 56.6 bits (136), Expect = 3e-13
		 Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
		
		Query: 2   PEQPGEKAPEKSKEVTPAPEKPADKEANQTPE-RRNGNMAKTPVANNHRRLPATGEQANP 60
		             +        S+     P   A     Q P+     N  K P+    R+LP+TGE ANP
		Sbjct: 455 LAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANP 514
		
		Query: 61  FFTAAAVAVMTTAGVLAVTKRKENN 85
		           FFTAAA+ VM TAGV AV KRKE N
		Sbjct: 515 FFTAAALTVMATAGVAAVVKRKEEN 539
		
		
SPs1743	SPs1748	Y	N	N	SPs1728	SPs1767
	SPs1743	1	22	4.107590	mitogenic factor
	SPs1744	3	24	4.320675	low temperature requirement C protein
	SPs1745	2	24	4.013034	glycerol dehydrogenase
	SPs1746	1	21	3.457298	fructose-6-phosphate aldolase
	SPs1747	0	22	3.239400	pyruvate formate-lyase 2
	SPs1748	2	18	2.148523	PTS system cellobiose-specific transporter
SPs1765	SPs1776	Y	Y	Y	SPs1750	SPs1789
	SPs1765	-1	20	3.530782	transcriptional regulator
	SPs1766	0	24	3.959553	cold shock protein
	SPs1767	-1	24	4.206620	*alkyl hydroperoxide reductase
	SPs1768	-1	25	5.326873	NADH oxidase/alkyl hydroperoxidase reductase
	SPs1769	0	23	5.460428	imidazolonepropionase
	SPs1770	0	26	5.844644	urocanate hydratase
	SPs1771	-1	28	6.026099	glutamate formiminotransferase
	SPs1772	0	29	6.109959	formiminotetrahydrofolate cyclodeaminase
	SPs1773	0	24	4.813860	formate--tetrahydrofolate ligase
	SPs1774	-2	22	4.026014	hypothetical protein
	SPs1775	-2	23	3.822788	cationic amino acid transporter protein
	SPs1776	-1	18	3.518482	histidine ammonia-lyase
	1767#SPs1769	UREASE#Urea amidohydrolase (urease) protein signature.	47	7e-08
		>UREASE#Urea amidohydrolase (urease) protein signature.
		          Length = 570
		
		 Score = 47.4 bits (113), Expect = 7e-08
		 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
		
		Query: 46  IAIKDGLIVALG-SGEPDAE-----LVGPQTIMRSYKGKIATPGIIDCHTHLV 92
		           I +KDG I A+G +G PD +     +VGP T + + +GKI T G +D H H +
		Sbjct: 88  IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
		
		
SPs1814	SPs1828	Y	Y	N	SPs1799	SPs1838
	SPs1814	3	18	-4.464520	50S ribosomal protein L32
	SPs1815	4	17	-4.252152	50S ribosomal protein L33
	SPs1816	4	19	-4.205172	cadmium resistance protein
	SPs1817	6	20	-3.562922	cadmium efflux system accessory
	SPs1818	6	21	-2.776580	hypothetical protein
	SPs1819	7	22	-1.278170	hypothetical protein
	SPs1820	5	20	-0.595630	hypothetical protein
	SPs1821	5	19	-0.463419	hypothetical protein
	SPs1822	4	18	0.470600	hypothetical protein
	SPs1823	3	16	0.112359	hypothetical protein
	SPs1824	1	13	0.366931	hypothetical protein
	SPs1825	1	13	0.242900	hypothetical protein
	SPs1826	1	13	-0.220077	hypothetical protein
	SPs1827	-1	14	-0.542443	hypothetical protein
	SPs1828	0	19	-3.039511	TetR/AcrR family transcriptional regulator
	1825#SPs1827	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	35	0.001
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 35.2 bits (81), Expect = 0.001
		 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
		
		Query: 266 GLSQLTQATTLSDEKAKGIQSLIVGLPVLNQGIQQLNTELSTLQPPNLNADELGNSLGAI 325
		            L        +S+E+   + SLI          +Q +T  +      LN D+   +    
		Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIK---------EQFSTWQNQKYQKELNLDKKR-AERLT 218
		
		Query: 326 AQAAKQVIAEETAAQNEELSALQA----TSVYQSLTAEQQGELAAALSQSDKSQTVSAAQ 381
		             A        +  +   L    +     ++ +    EQ+ +   A   ++     S  +
		Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA--VNELRVYKSQLE 276
		
		Query: 382 TILSSVQTLSTSLQSLSQEDQSKQLEQLKEAVAQIANQSNQ 422
		            I S + +     Q ++Q  +++ L++L++    I   + +
		Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317
		
		
	1826#SPs1828	HTHTETR#TetR bacterial regulatory protein HTH signature.	47	4e-09
		>HTHTETR#TetR bacterial regulatory protein HTH signature.
		          Length = 215
		
		 Score = 47.3 bits (112), Expect = 4e-09
		 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 11/134 (8%)
		
		Query: 4   RKENTKQAILKAMVMLLKTESFDDITTVKLSKRAGISRSSFYTHYKDKYEMID------- 56
		             + T+Q IL   + L   +     +  +++K AG++R + Y H+KDK ++         
		Sbjct: 8   EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67
		
		Query: 57  -YYQQTFFHKLEYIFEKKYQNKEQAFLEVFEFLQREQLLSSLLSANGTKEIQA---FIIN 112
		               +                  +  + V E    E+    L+     K        ++ 
		Sbjct: 68  SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127
		
		Query: 113 KVRLLITTDLQDKF 126
		           + +  +  +  D+ 
		Sbjct: 128 QAQRNLCLESYDRI 141
		
		
SPs0080	SPs0087	N	Y	N	SPs0065	SPs0104
	SPs0080	1	21	-3.766933	competence protein, ABC transporter subunit
	SPs0081	1	21	-2.835052	competence protein
	SPs0082	-1	14	-1.803553	competence protein
	SPs0083	-1	16	-1.443721	hypothetical protein
	SPs0084	-2	15	-0.378500	competence protein
	SPs0085	-2	15	1.490091	hypothetical protein
	SPs0086	-3	15	1.778433	hypothetical protein
	SPs0087	-2	18	2.179821	acetate kinase
	80#SPs0080	BCTERIALGSPF#Bacterial general secretion pathway protein F signa...	88	5e-22
		>BCTERIALGSPF#Bacterial general secretion pathway protein F
		           signature.
		          Length = 408
		
		 Score = 88.0 bits (218), Expect = 5e-22
		 Identities = 59/291 (20%), Positives = 118/291 (40%), Gaps = 20/291 (6%)
		
		Query: 4   SLLKGQGLADMLSGLG--FSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEV 61
		            +++G  LAD +      F       ++  +  G+++  L  +  Y  Q  ++R +  + 
		Sbjct: 113 KVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQA 172
		
		Query: 62  ITYPLILLLFLFVMMLGLRRYLVPQLETQNQ---------------ITYFLNHFPAFFIG 106
		           + YP +L +    ++  L   +VP++  Q                 ++  +  F  + + 
		Sbjct: 173 MIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLL 232
		
		Query: 107 FCSGLILLFGMVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDL 166
		                 + F +  LR + + R+  + RL   P +G++ +   T+ YAR    L    + L
		Sbjct: 233 ALLAGFMAFRV-MLR-QEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPL 290
		
		Query: 167 MTILDIMAIEKSSL-MKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKL 225
		           +  + I     S+   +        ++ EG + H  +     F   +  MI  GE   +L
		Sbjct: 291 LQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGEL 350
		
		Query: 226 GAELEIYAQESWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAAILLPIYQ 276
		            + LE  A     +F SQ+     L +P + + +A  ++ I  AIL PI Q
		Sbjct: 351 DSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQ 401
		
		
		
		 Score = 34.8 bits (80), Expect = 3e-04
		 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
		
		Query: 154 REWGTLIGQGLDLMTILDIMAIE-KSSLMKELAEDIRMSLLEGQAFHIKVATYP-FFKKE 211
		           R+  TL+   + L   LD +A + +   + +L   +R  ++EG +    +  +P  F++ 
		Sbjct: 75  RQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERL 134
		
		Query: 212 LSLMIEYGEIKSKLGAELEIYA--QESWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAA 269
		              M+  GE    L A L   A   E  +Q  S++ Q   +I P +  VVA+ +V I  +
		Sbjct: 135 YCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQA--MIYPCVLTVVAIAVVSILLS 192
		
		Query: 270 ILLPIYQNM 278
		           +++P     
		Sbjct: 193 VVVPKVVEQ 201
		
		
	81#SPs0081	BCTERIALGSPG#Bacterial general secretion pathway protein G signa...	38	7e-07
		>BCTERIALGSPG#Bacterial general secretion pathway protein G
		          signature.
		          Length = 145
		
		 Score = 37.9 bits (88), Expect = 7e-07
		 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
		
		Query: 1  MLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQ-LK 59
		          +++VI++I VL  L VPNL   K++  +    + +  +EN  ++Y+L     P+ +Q L+
		Sbjct: 15 IMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYPTTNQGLE 74
		
		Query: 60 A--DGSITEKQEKAY-QDYYDK 78
		          +  +          Y ++ Y K
		Sbjct: 75 SLVEAPTLPPLAANYNKEGYIK 96
		
		
	84#SPs0084	OMPTIN#Omptin serine protease signature.	27	0.034
		>OMPTIN#Omptin serine protease signature.
		          Length = 317
		
		 Score = 26.9 bits (59), Expect = 0.034
		 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
		
		Query: 37  LLKRSHYLARHDQDNWLLFSHQL--REELSGARFYKVADNK-LYVEKGKKVLAFGQFKSH 93
		             K S ++   D D       ++  R ++    +Y VA N   YV    KV   G +   
		Sbjct: 217 TFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRV 276
		
		Query: 94  DFRKSASNGKG 104
		                  N KG
		Sbjct: 277 T------NKKG 281
		
		
	87#SPs0087	ACETATEKNASE#Acetate kinase family signature.	502	e-180
		>ACETATEKNASE#Acetate kinase family signature.
		          Length = 400
		
		 Score =  502 bits (1293), Expect = e-180
		 Identities = 209/401 (52%), Positives = 281/401 (70%), Gaps = 7/401 (1%)
		
		Query: 3   KTIAINAGSSSLKWQLYQMPEEAVLAQGIIERIGLKDSISTVKYDGKKEEQILDIHDHTE 62
		           K + IN GSSSLK+QL +  +  VLA+G+ ERIG+ DS+ T   +G+K +   D+ DH +
		Sbjct: 2   KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61
		
		Query: 63  AVKILLNDLI--HFGIIAAYDEITGVGHRVVAGGELFKESVVVNDKVLEQIEELSVLAPL 120
		           A+K++L+ L+   +G+I    EI  VGHRVV GGE F  SV++ D VL+ I +   LAPL
		Sbjct: 62  AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121
		
		Query: 121 HNPGAAAGIRAFRDILPDITSVCVFDTSFHTSMAKHTYLYPIPQKYYTDYKVRKYGAHGT 180
		           HNP    GI+A   I+PD+  V VFDT+FH +M  + YLYPIP +YYT YK+RKYG HGT
		Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181
		
		Query: 181 SHKYVAQEAAKMLGRPLEELKLITAHIGNGVSITANYHGKSVDTSMGFTPLAGPMMGTRS 240
		           SHKYV+Q AA++L +P+E LK+IT H+GNG SI A  +GKS+DTSMGFTPL G  MGTRS
		Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241
		
		Query: 241 GDIDPAIIPYLIEQDPELKDAADVVNMLNKKSGLSGVSGISSDMRDI-EAGLQEDNPDAV 299
		           G IDP+II YL+E+  E   A +VVN+LNKKSG+ G+SGISSD RD+ +A  +  +  A 
		Sbjct: 242 GSIDPSIISYLMEK--ENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299
		
		Query: 300 LAYNIFIDRIKKCIGQYFAVLNGADALVFTAGMGENAPLMRQDVIGGLTWFGMDIDPEKN 359
		           LA N+F  R+KK IG Y A + G D +VFTAG+GEN P +R+ ++ GL + G  +D EKN
		Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359
		
		Query: 360 -VFGYRGDISTPESKVKVLVISTDEELCIARDVERL-KNTK 398
		            V G    IST +SKV V+V+ T+EE  IA+D E++ ++ K
		Sbjct: 360 KVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVESLK 400
		
		
SPs0179	SPs0186	N	Y	N	SPs0164	SPs0203
	SPs0179	-2	14	1.355214	response regulator
	SPs0180	-1	16	2.082985	ribonuclease P
	SPs0181	-1	17	2.155676	hypothetical protein
	SPs0182	-1	17	1.842318	hypothetical protein
	SPs0183	4	19	1.801385	50S ribosomal protein L34
	SPs0184	3	19	1.399245	N-acetylmannosamine-6-phosphate 2-epimerase
	SPs0185	3	20	1.306382	N-acetylneuraminate-binding protein
	SPs0186	3	22	1.682963	sugar transporter sugar binding lipoprotein
	179#SPs0179	HTHFIS#FIS bacterial regulatory protein HTH signature.	32	0.002
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 32.1 bits (73), Expect = 0.002
		 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
		
		Query: 50  ERGDHQLYFLDIEIGEYTRCGLELAAAIRQKDPNAVIVFVTTHSEFAPISFKYKVSALDF 109
		             GD  L   D+ + +      +L   I++  P+  ++ ++  + F       +  A D+
		Sbjct: 44  AAGDGDLVVTDVVMPD--ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY 101
		
		Query: 110 IDK 112
		           + K
		Sbjct: 102 LPK 104
		
		
	181#SPs0181	60KDINNERMP#60kDa inner membrane protein signature.	162	2e-48
		>60KDINNERMP#60kDa inner membrane protein signature.
		          Length = 548
		
		 Score =  162 bits (411), Expect = 2e-48
		 Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 20/237 (8%)
		
		Query: 31  VTAQSSSGWDQLVYLFARAIQWL-----SFDGSIGVGIILFTLTIRLMLMPLFNMQIKSS 85
		           +      GW   +   ++ +  L     SF G+ G  II+ T  +R ++ PL   Q  S 
		Sbjct: 324 LDLTVDYGWLWFI---SQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSM 380
		
		Query: 86  QKMQDIQPELRELQRKYAGKDTQTRMKLAEESQALYKKYGVNPYASLLPLLIQMPVMIAL 145
		            KM+ +QP+++ ++ +        + ++++E  ALYK   VNP     PLLIQMP+ +AL
		Sbjct: 381 AKMRMLQPKIQAMRERLGDD----KQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLAL 436
		
		Query: 146 FQALTRVSFLKTGTF-LWV-ELAQHDHLYLLPVLAAVFTFLSTWLTNLAAKEKNVMMTVM 203
		           +  L     L+   F LW+ +L+  D  Y+LP+L  V  F    ++       + M   +
		Sbjct: 437 YYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMS--PTTVTDPMQQKI 494
		
		Query: 204 IYVMPLMIFFMGFNLASGVVLYWTVSNAFQVVQLLLLNNPFKIIAERQRLANEEKER 260
		           +  MP++         SG+VLY+ VSN   ++Q  L+        E++ L + EK++
		Sbjct: 495 MTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYR----GLEKRGLHSREKKK 547
		
		
	185#SPs0185	adhesinb#Adhesin B signature.	30	0.010
		>adhesinb#Adhesin B signature.
		          Length = 310
		
		 Score = 30.2 bits (68), Expect = 0.010
		 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
		
		Query: 3  MKKLASLVMLGASVLGLAACGGKSQKEAGASKSD 36
		          MKK   LV+L  + +GLAAC   SQK +  + S 
		Sbjct: 1  MKKCRFLVLLLLAFVGLAACS--SQKSSTETGSS 32
		
		
	186#SPs0186	ACETATEKNASE#Acetate kinase family signature.	25	0.017
		>ACETATEKNASE#Acetate kinase family signature.
		          Length = 400
		
		 Score = 25.2 bits (55), Expect = 0.017
		 Identities = 10/27 (37%), Positives = 14/27 (51%)
		
		Query: 33  QAISNGDEKPEDALKAFTEKANKTIKK 59
		            A  NGD++ + AL  F  +  KTI  
		Sbjct: 289 AAFKNGDKRAQLALNVFAYRVKKTIGS 315
		
		
SPs0302	SPs0308	N	Y	N	SPs0287	SPs0326
	SPs0302	-2	9	-0.723751	preprotein translocase subunit SecA
	SPs0303	-1	11	-1.222029	4'-phosphopantetheinyl transferase
	SPs0304	-1	10	-0.896108	alanine racemase
	SPs0305	-1	10	-1.014963	hypothetical protein
	SPs0306	0	9	-1.837688	hypothetical protein
	SPs0307	2	13	-1.098533	hypothetical protein
	SPs0308	3	12	-1.305691	ABC transporter permease
	302#SPs0302	SECA#SecA protein signature.	1052	0.0
		>SECA#SecA protein signature.
		          Length = 901
		
		 Score = 1052 bits (2723), Expect = 0.0
		 Identities = 394/903 (43%), Positives = 560/903 (62%), Gaps = 73/903 (8%)
		
		Query: 1   MANILRKVIENDKG-ELRKLEKIAKKVESYADQMASLSDRDLQGKTLEFKERYQKGETLE 59
		           +  +L KV  +     LR++ K+   + +   +M  LSD +L+GKT EF+ R +KGE LE
		Sbjct: 2   LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61
		
		Query: 60  QLLPEAFAVVREAAKRVLGLFPYRVQIMGGIVLHNGDVPEMRTGEGKTLTATMPVYLNAI 119
		            L+PEAFAVVREA+KRV G+  + VQ++GG+VL+   + EMRTGEGKTLTAT+P YLNA+
		Sbjct: 62  NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121
		
		Query: 120 AGEGVHVITVNEYLSTRDATEMGEVYSWLGLSVGINLAAKSPAEKREAYNCDITYSTNSE 179
		            G+GVHV+TVN+YL+ RDA     ++ +LGL+VGINL       KREAY  DITY TN+E
		Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181
		
		Query: 180 VGFDYLRDNMVVRQEDMVQRPLNFALVDEVDSVLIDEARTPLIVSGAVSSETNQLYIRAD 239
		            GFDYLRDNM    E+ VQR L++ALVDEVDS+LIDEARTPLI+SG     + ++Y R +
		Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240
		
		Query: 240 MFVKTLT------------SVDYVIDVPTKTIGLSDSGIDKAESYFNLS-------NLYD 280
		             +  L                + +D  ++ + L++ G+   E             +LY 
		Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300
		
		Query: 281 IENVALTHFIDNALRANYIMLLDIDYVVSEDGEILIVDQFTGRTMEGRRFSDGLHQAIEA 340
		             N+ L H +  ALRA+ +   D+DY+V +DGE++IVD+ TGRTM+GRR+SDGLHQA+EA
		Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359
		
		Query: 341 KEGVRIQEESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREVYNMRIIPIPTNRPIA 400
		           KEGV+IQ E++T ASIT+QN FR+Y+KLAGMTGTA TE  EF  +Y +  + +PTNRP+ 
		Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419
		
		Query: 401 RIDHTDLLYPTLESKFRAVVEDVKTRHAKGQPILVGTVAVETSDLISRKLVEAGIPHEVL 460
		           R D  DL+Y T   K +A++ED+K R AKGQP+LVGT+++E S+L+S +L +AGI H VL
		Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479
		
		Query: 461 NAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497
		           NAK H  EA I+  AG   AVTIATNMAGRGTDI LG                       
		Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539
		
		Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMRRFG 551
		                 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LMR F 
		Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599
		
		Query: 552 SDRIKAFLDRMKLDEEDTVIKSGMLGRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREI 611
		           SDR+   + ++ + +    I+   + + + +AQ++VE  N+D RKQ+L+YDDV  +QR  
		Sbjct: 600 SDRVSGMMRKLGM-KPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658
		
		Query: 612 IYANRRDVITANRDLGPEIKAMIKRTIDRAVDAHARSNR---KDAVDAIVTFARTSLVPE 668
		           IY+ R +++  + D+   I ++ +      +DA+           +  +    +     +
		Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717
		
		Query: 669 ESIS--AKELRGLKDEQIKEKLYQRALAIYDQQLSKLRDQEAIIEFQKVLILMIVDNKWT 726
		             I+    +   L +E ++E++  +++ +Y ++   +   E +  F+K ++L  +D+ W 
		Sbjct: 718 LPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWK 776
		
		Query: 727 EHIDALDQLRNAVGLRGYAQNNPVVEYQAEGFKMFQDMIGAIEFDVTRTMMKAQIH-EQE 785
		           EH+ A+D LR  + LRGYAQ +P  EY+ E F MF  M+ +++++V  T+ K Q+   +E
		Sbjct: 777 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 836
		
		Query: 786 RERASQRATTAAPQNIQSQQSANTDD-------------LPKVERNEACPCGSGKKFKNC 832
		            E   Q+    A +  Q QQ ++ DD               KV RN+ CPCGSGKK+K C
		Sbjct: 837 VEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQC 896
		
		Query: 833 HGR 835
		           HGR
		Sbjct: 897 HGR 899
		
		
	304#SPs0304	ALARACEMASE#Alanine racemase signature.	345	e-120
		>ALARACEMASE#Alanine racemase signature.
		          Length = 356
		
		 Score =  345 bits (888), Expect = e-120
		 Identities = 121/368 (32%), Positives = 194/368 (52%), Gaps = 23/368 (6%)
		
		Query: 7   RPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQVDGYCVSN 66
		           RP  A ++LQA+K+N++ V++      + ++VVKA+AYGHG  ++  A+    DG+ + N
		Sbjct: 3   RPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI-GATDGFALLN 60
		
		Query: 67  LDEALQLRQAGIDKEILIL-GVLLPNELELAVANAITVTIAS---LDWIALARLEKKECQ 122
		           L+EA+ LR+ G    IL+L G     +LE+   + +T  + S   L  +  ARL+     
		Sbjct: 61  LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP--- 117
		
		Query: 123 GLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQ 182
		            L +++KV+SGM R+G +  + + +              + +HFA A+  D       + 
		Sbjct: 118 -LDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIS--GAMA 174
		
		Query: 183 FFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGS-DLSLPFPLQE 241
		             ++   GL         SNSA ++WH +  F+ VR GI+ YG +PSG         L+ 
		Sbjct: 175 RIEQAAEGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231
		
		Query: 242 ALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNM-QGFSVLVDGQ 300
		            ++L S ++ V+ + AG+ VGYG  YTA+  + +G V  GYADG+ R+   G  VLVDG 
		Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291
		
		Query: 301 FCEIIGRVSMDQLTIRLSKA--YPLGTKVTLIGSNQQKNISTTDIANYRNTINYEVLCLL 358
		               +G VSMD L + L+      +GT V L G    K I   D+A    T+ YE++C L
		Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCAL 347
		
		Query: 359 SDRIPRIY 366
		           + R+P + 
		Sbjct: 348 ALRVPVVT 355
		
		
	305#SPs0305	TONBPROTEIN#Gram-negative bacterial tonB protein signature.	30	0.013
		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.
		          Length = 239
		
		 Score = 30.3 bits (68), Expect = 0.013
		 Identities = 12/36 (33%), Positives = 15/36 (41%)
		
		Query: 117 KPTDQPKPTDQPKPSPSKVDTAPASSLSRQLPEART 152
		           KP    K  +QPK     V++ PAS      P   T
		Sbjct: 99  KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 134
		
		
	307#SPs0307	FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.	71	1e-15
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.
		          Length = 296
		
		 Score = 71.1 bits (174), Expect = 1e-15
		 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 24/265 (9%)
		
		Query: 304 VACVNQHPKTAKETEQQRIVATSVAVVDICDRLNLDLVGVCDSKLYTL----PKRYDAVK 359
		                 +   A   +  RIVA     V++   L +   GV D+  Y L    P   D+V 
		Sbjct: 20  PLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVI 79
		
		Query: 360 RVGLPMNPDIELIASLKPTWILSPNSLQEDLEPKYQKLDTEYGFLNLRSVEG------MY 413
		            VGL   P++EL+  +KP++++          P  + L            +G        
		Sbjct: 80  DVGLRTEPNLELLTEMKPSFMV----WSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMAR 135
		
		Query: 414 QSIDDLGNLFQRQQEAKELRQQYQDYYRAFQAKRKGK-KKPKVLILMGLPGSYLVATNQS 472
		           +S+ ++ +L   Q  A+    QY+D+ R+ + +   +  +P +L  +  P   LV    S
		Sbjct: 136 KSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNS 195
		
		Query: 473 YVGNLLDLAGGENVYQ--SDEKEFLSVNPEDMLA-KEPDLILRTAHAIPDKVKVMFDKEF 529
		               +LD  G  N +Q  ++     +V+ + + A K+ D++        D   +M     
		Sbjct: 196 LFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALM----- 250
		
		Query: 530 AENDIWKHFTAVKEGKVYDLDNTLF 554
		               +W+    V+ G+   +    F
		Sbjct: 251 -ATPLWQAMPFVRAGRFQRVPAVWF 274
		
		
	308#SPs0308	TYPE3IMSPROT#Type III secretion system inner membrane S protein ...	28	0.045
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein
		           family signature.
		          Length = 354
		
		 Score = 28.2 bits (63), Expect = 0.045
		 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
		
		Query: 264 LASVATSIVGVVSFLGL---IVPHMSRLLVGSKHQILIPFSALLGAFVFLLADTLGRSLA 320
		           + S A  +      +GL      H S+L++    Q  +PFS  L   V  +       L 
		Sbjct: 29  VVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFF-YLC 87
		
		Query: 321 YPLEISPAIIMSIVGG 336
		           +PL ++ A +M+I   
		Sbjct: 88  FPL-LTVAALMAIASH 102
		
		
SPs0654	SPs0666	N	Y	N	SPs0639	SPs0678
	SPs0654	1	17	-3.612572	hypothetical protein
	SPs0655	1	18	-5.478740	hypothetical protein
	SPs0656	-1	16	-2.088314	hypothetical protein
	SPs0657	1	19	-0.500753	protein SpeL
	SPs0658	-1	18	1.222605	hypothetical protein
	SPs0659	-3	20	1.863438	hypothetical protein
	SPs0660	-2	20	2.063597	two-component response regulator
	SPs0661	-2	19	1.980875	two-component sensor histidine kinase
	SPs0662	-1	17	0.987658	hypothetical protein
	SPs0663	2	22	1.200726	hypothetical protein
	SPs0664	3	22	1.015706	arginine repressor ArgR
	SPs0665	1	20	1.314176	hypothetical protein
	SPs0666	3	23	1.999616	arginine deiminase
	653#SPs0654	FLGFLGJ#Flagellar protein FlgJ signature.	87	2e-21
		>FLGFLGJ#Flagellar protein FlgJ signature.
		          Length = 313
		
		 Score = 87.1 bits (215), Expect = 2e-21
		 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
		
		Query: 23  SLTAAQAILESGWGKHA-------PHNALFGIKADASWTGKSFDTKTQEEYQPGIVTDIV 75
		            L  AQA LESGWG+         P   LFG+KA  +W G   +  T E Y+ G    + 
		Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230
		
		Query: 76  DRFRAYDSWTDSIIDHGKFLNDNPRYKAVIGETDYKKACYAIKAAGYATASSYVELLIQL 135
		            +FR Y S+ +++ D+   L  NPRY AV      ++   A++ AGYAT   Y   L  +
		Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290
		
		Query: 136 IEEND 140
		           I++  
		Sbjct: 291 IQQMK 295
		
		
	656#SPs0657	BACTRLTOXIN#Bacterial toxin signature.	45	6e-08
		>BACTRLTOXIN#Bacterial toxin signature.
		          Length = 266
		
		 Score = 44.9 bits (106), Expect = 6e-08
		 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 36/222 (16%)
		
		Query: 6   LKEIYN-KEIIEKNNISINAKQGTQLIFNTDENTTVWNDNTFKKVISSNLSPSQERMFNV 64
		           +K +Y+   +      S++      LI+N  +      D    KV +  L+    + +  
		Sbjct: 51  MKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYD----KVKTELLNEDLAKKYK- 105
		
		Query: 65  GDHVNIFAIVKSYHVVCKEQFNYSD---------GGIIKTSDVKPEE---KAIYINIFGE 112
		            + V+++      +     + N            GGI K      +    + + + ++  
		Sbjct: 106 DEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYEN 165
		
		Query: 113 KELRTLTAKDKITFKNNIVTLQEIDVRLRKSLMGDSKIKLYEYD-SLYKKGFWDIHYKDG 171
		           K     T   ++      VT QE+D++ R  L+  +K  LYE++ S Y+ G+      +G
		Sbjct: 166 KRN---TISFEVQTDKKSVTAQELDIKARNFLI--NKKNLYEFNSSPYETGYIKFIENNG 220
		
		Query: 172 GIRHTNLFTYPD-----------YTDNETIDMSKVSHFDVHL 202
		                ++   P            Y DN+T+D SK    +VHL
		Sbjct: 221 NTFWYDMMPAPGDKFDQSKYLMMYNDNKTVD-SKSVKIEVHL 261
		
		
	659#SPs0660	HTHFIS#FIS bacterial regulatory protein HTH signature.	93	1e-23
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 92.6 bits (230), Expect = 1e-23
		 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
		
		Query: 2   LIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGI 61
		           L+ +D+  +R  +   +  + +    V    N    W        D+V+TD+ MP  N  
		Sbjct: 7   LVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
		
		Query: 62  QLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLQQKLD 121
		            L   IK+  P   ++ ++  + F  A+ A + GA DYL KPF   D+ +++G + + L 
		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRALA 120
		
		Query: 122 LSKKTETIQELVEQPQKEVSAIAMAIHE------RLADSDLTL 158
		             K+  +  E   Q    +   + A+ E      RL  +DLTL
		Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
		
		
	660#SPs0661	PF06580#Sensor histidine kinase	183	7e-55
		>PF06580#Sensor histidine kinase
		          Length = 349
		
		 Score =  183 bits (466), Expect = 7e-55
		 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 10/203 (4%)
		
		Query: 362 EKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGN- 420
		                + +L AL +QINPHF++N L+ I  +    D  +  E+  SL++  R +L   N 
		Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNA 213
		
		Query: 421 EYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIK 480
		             + LADEL  V  YL +   ++ D+L +E Q      D  +P +++Q LVEN I HGI 
		Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273
		
		Query: 481 EVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHY 540
		           ++ + G I +  +     + L V + G     ++  ++       G GL+NV +RL++ Y
		Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST-------GTGLQNVRERLQMLY 326
		
		Query: 541 GEGYHMTIHSQSDQFTEIQLSLP 563
		           G    + +  +  +   + + +P
		Sbjct: 327 GTEAQIKLSEKQGKVNAM-VLIP 348
		
		
	663#SPs0664	ARGREPRESSOR#Bacterial arginine repressor signature.	123	7e-39
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score =  123 bits (310), Expect = 7e-39
		 Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
		
		Query: 1   MNKKETRHRLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDT 60
		           MNK + RH  IR +I+   I TQ EL + L+K+G  +TQAT+SRD+KEL+LVKV + N +
		Sbjct: 1   MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59
		
		Query: 61  HYEALAISQTRWEH-RLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIV 119
		           +  +L   Q      +L+  + DA V +    H I+LKT+PG AQ+ G+++D +   EI+
		Sbjct: 60  YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119
		
		Query: 120 ATVCGDDTCLIVCEDNEQAKACYETL 145
		            T+CGDDT LI+C  ++  K   + +
		Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
		
		
	665#SPs0666	ARGDEIMINASE#Bacterial arginine deiminase signature.	579	0.0
		>ARGDEIMINASE#Bacterial arginine deiminase signature.
		          Length = 409
		
		 Score =  579 bits (1493), Expect = 0.0
		 Identities = 192/410 (46%), Positives = 277/410 (67%), Gaps = 9/410 (2%)
		
		Query: 5   TPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDE 64
		            PI+++SEIG+LKKVLLHRPG+E+ENL P  ++  LFDDIP+LE A++EH+ FA  L++ 
		Sbjct: 6   NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65
		
		Query: 65  GIEVLYLETLAAESLVTP-EIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEK 123
		            +E+ Y+E L +E LV+   +   FI +++ EA I+   T   +++   ++     +I K
		Sbjct: 66  LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSL-TIDNMISK 124
		
		Query: 124 TMAGVQKSELPEIPASEKGLTDLVESSYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSE 183
		            ++GV   EL    +S   L DLV  +  F IDPMPN+ FTRDPFA+IG GV++N MF++
		Sbjct: 125 MISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181
		
		Query: 184 TRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAA 243
		            R RET++ +YIF +HP+Y    VP+  +R E   +EGGDELVL+K +L +GIS+RT+A 
		Sbjct: 182 VRQRETIFAEYIFKYHPVYKE-NVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAK 240
		
		Query: 244 SIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSV 303
		           S+EKL +++FK    F  +LAF+   NR +MHLDTVFT +DY  FT     +    +Y +
		Sbjct: 241 SVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVL 300
		
		Query: 304 TYDNE--ELHIVEEKGDLADLLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAP 361
		           TY+    ++HI +EK  + D+L+  LG  K+D+I+C G +L+   REQWNDG+N L IAP
		Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359
		
		Query: 362 GVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
		           G ++ Y+RN +TN + E  G+K+ +I  SEL RGRGGPRCMSMP  REDI
		Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
		
		
SPs0674	SPs0689	N	Y	N	SPs0659	SPs0698
	SPs0674	2	20	-2.772211	phosphopantetheine adenylyltransferase
	SPs0675	2	16	-2.243283	hypothetical protein
	SPs0676	1	15	-2.711516	ribose transport operon repressor
	SPs0677	-1	13	-1.375530	hypothetical protein
	SPs0678	0	12	-0.628899	ribosomal RNA large subunit methyltransferase N
	SPs0679	0	19	0.889975	hypothetical protein
	SPs0680	1	24	1.707313	peroxide resistance protein
	SPs0681	0	18	1.633553	hypothetical protein
	SPs0682	-1	16	1.865949	glucose kinase
	SPs0683	-2	16	0.904071	hypothetical protein
	SPs0684	-2	13	0.837097	GTP-binding protein TypA
	SPs0685	-4	12	0.804181	hypothetical protein
	SPs0686	-3	13	0.389525	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
	SPs0687	-2	15	0.038677	undecaprenyldiphospho-muramoylpentapeptide
	SPs0688	-1	15	-0.663101	cell division protein
	SPs0689	-1	18	-1.678780	cell division protein
	673#SPs0674	LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signat...	153	2e-50
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein
		           signature.
		          Length = 166
		
		 Score =  153 bits (388), Expect = 2e-50
		 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
		
		Query: 5   IGLYTGSFDPVTNGHLDIVKRASGLFDQIYVGIFDNPTKKSYFKLEVRKAMLTQALADFT 64
		             +Y GSFDP+T GHLDI++R   LFDQ+YV +  NP K+  F ++ R   + +A+A   
		Sbjct: 2   NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61
		
		Query: 65  NVIVVTSHERLAIDVAKELRVTHLIRGLRNATDFEYEENLEYFNHLLAPNIETVYLISRN 124
		           N  V +  E L ++ A++ +   ++RGLR  +DFE E  +   N  LA ++ETV+L +  
		Sbjct: 62  NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120
		
		Query: 125 KWQALSSSRVRELIHFQSSLEGLVPQSVIAQV-EKMN 160
		           ++  LSSS V+E+  F  ++E  VP  V A + ++ +
		Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
		
		
	675#SPs0676	NUCEPIMERASE#Nucleotide sugar epimerase signature.	32	0.003
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.
		          Length = 334
		
		 Score = 31.7 bits (72), Expect = 0.003
		 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
		
		Query: 50  LAQSLKTKKNQLVGLLLPDISNPFF-PRLARGAEEYLKEKGYRVMLGNISDSEALEE--- 105
		           +++ L    +Q+VG+   D  N ++   L +   E L + G++    +++D E + +   
		Sbjct: 16  VSKRLLEAGHQVVGI---DNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFA 72
		
		Query: 106 --EYVHVLLQSNAAGI 119
		              +  V +  +   +
		Sbjct: 73  SGHFERVFISPHRLAV 88
		
		
	678#SPs0679	PREPILNPTASE#Type IV prepilin cysteine protease (C20) family sig...	29	0.009
		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family
		           signature.
		          Length = 290
		
		 Score = 29.4 bits (66), Expect = 0.009
		 Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
		
		Query: 70  SLIIILWASMVHWVSASYCYLLLFSLLFSLF--DWRSQ------EYPFILWLFSFVSLLL 121
		           +L+ +  A  +     +   LLL  +L +L   D            P +     F  L  
		Sbjct: 118 ALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG 177
		
		Query: 122 FYSIN---------YLSLILLLLGLLAHLRPFSIGAGDFFYLASLALVLDLTSLIWLIQL 172
		           F S+          YL L  L            +G GDF  LA+L   L   +L  ++ L
		Sbjct: 178 FVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLL 237
		
		Query: 173 ASLAGITACLLL-------GIKRIPFIPYLSFGLFWIVLL 205
		           +SL G    + L         K IPF PYL+    WI LL
		Sbjct: 238 SSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIA-GWIALL 276
		
		
	679#SPs0680	HELNAPAPROT#Helicobacter neutrophil-activating protein A family ...	149	9e-49
		>HELNAPAPROT#Helicobacter neutrophil-activating protein A family
		           signature.
		          Length = 153
		
		 Score =  149 bits (377), Expect = 9e-49
		 Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 4/154 (2%)
		
		Query: 19  KKEASNNEKT--KAVLNQAVADLSVAASIVHQVHWYMRGPGFLYLHPKMDELLDSLNANL 76
		           K E +   +T  +  LN  +++  +  S +H+ HWY++GP F  LH K +EL D     +
		Sbjct: 2   KTENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETV 61
		
		Query: 77  DEMSERLITIGGAPYSTLAEFSKHSKLDETKGTYDKTVAQHLARLVEVYLYLSSLYQVGL 136
		           D ++ERL+ IGG P +T+ E+++H+ + +     + + ++ +  LV  Y  +SS  +  +
		Sbjct: 62  DTIAERLLAIGGQPVATVKEYTEHASITDGGN--ETSASEMVQALVNDYKQISSESKFVI 119
		
		Query: 137 DITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERG 170
		            + +E  D  T DLF     E EK +WML +  G
		Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
		
		
	681#SPs0682	PF03309#Bvg accessory factor	32	0.003
		>PF03309#Bvg accessory factor
		          Length = 271
		
		 Score = 31.7 bits (72), Expect = 0.003
		 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
		
		Query: 5   LLGIDLGGTTIKFGILTAAGEVQE---KWAIETNILEGGKHIVPDIIASIKHRLDLYGLS 61
		           LL ID+  T    G+++ +G+  +   +W I T        +  D +A       L G  
		Sbjct: 2   LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTIDG--LIGDD 54
		
		Query: 62  SADFVGIGMGSPGAVDRDTNTVTGAFNLNWKETQEVGSVVEKELGIPFAIDNDANVAALG 121
		           +    G    S   V    + V       W     V        GIP  +DN   V A  
		Sbjct: 55  AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110
		
		Query: 122 ERWVGA 127
		           +R V  
		Sbjct: 111 DRIVNC 116
		
		
	683#SPs0684	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	186	4e-53
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score =  186 bits (473), Expect = 4e-53
		 Identities = 102/477 (21%), Positives = 187/477 (39%), Gaps = 97/477 (20%)
		
		Query: 8   IRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELQE--RAMDSNDLEKERGITILAKNTA 65
		           I N+ ++AHVD GKTTL + LL  S  + E   + +     D+  LE++RGITI    T+
		Sbjct: 3   IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62
		
		Query: 66  VAYNDVRINIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLI 125
		             + + ++NI+DTPGH DF  EV R + ++DG +L++ A +G   QTR +     +  + 
		Sbjct: 63  FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122
		
		Query: 126 PIVVVNKIDKPSARP-------------------------------------AEVVDEVL 148
		            I  +NKID+                                           + V E  
		Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182
		
		Query: 149 ELFIELGADDEQLE-----------------FPVVYASAINGTSSLSDDPADQEHTMAPI 191
		           +  +E     + LE                 FPV + SA N               +  +
		Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG------------IDNL 230
		
		Query: 192 FDTIIDHIPAPVDNSDEPLQFQVSLLDYNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTT 251
		            + I +   +        L  +V  ++Y++   R+   R++ G + + D V +S      
		Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EK 286
		
		Query: 252 KNFRVTKLFGFFGLERREIQEAKAGDLIAVSGMEDIFVGETITPTDCVEALPILRIDEPT 311
		           +  ++T+++     E  +I +A +G+++ +   E + +   +  T  +     +    P 
		Sbjct: 287 EKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345
		
		Query: 312 LQMTFLVNNSPFAGREGKWITSRKVEER--LLAELQT----DVSLRVDPTDSPDKWTVSG 365
		           LQ T               +   K ++R  LL  L      D  LR     +  +  +S 
		Sbjct: 346 LQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF 390
		
		Query: 366 RGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVKCEPFERVQIDTPEEYQGAII 421
		            G++ + +    ++ +   E+++  P VI  E    K E    + I+ P     A I
		Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASI 445
		
		
		
		 Score = 42.5 bits (100), Expect = 4e-06
		 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
		
		Query: 403 EPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPARGLIGYSTEFLS 462
		           EP+   +I  P+EY         +   +++D Q + N +  L   IPAR +  Y ++   
		Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595
		
		Query: 463 MTRGYGIMNHTFDQYLPVV 481
		            T G  +       Y    
		Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
		
		
	686#SPs0687	LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.	30	0.010
		>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature.
		          Length = 428
		
		 Score = 30.4 bits (68), Expect = 0.010
		 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
		
		Query: 154 FEQEDQLSKVKHLGAVTKVFKDANQMPESTQLE-AVKEYFSRDLKTLLFIGGSAGAHVFN 212
		           FE    ++K   +        + N +  S+  E A     S   K  +  G         
		Sbjct: 83  FEALKAINKQTGI--------EINNVEPSSNFESAYNSALSAGHKIWVLNGFKHQQS-IK 133
		
		Query: 213 QFISDHPELKQRYNIINITGDPHLNELSSHLYRVDYVTD 251
		           Q+I  H E  +R  I  I  D  +       Y + +   
		Sbjct: 134 QYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIK 172
		
		
	688#SPs0689	SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein s...	47	5e-08
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein
		           signature.
		          Length = 347
		
		 Score = 47.4 bits (113), Expect = 5e-08
		 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
		
		Query: 170 RKTVERAGIKVENIIISPLAMAKTILNEGEREFGATVIDMGGGQTTVASMRAQELQYTNI 229
		           R++ + AG +   +I  P+A A           G+ V+D+GGG T VA +    + Y++ 
		Sbjct: 127 RESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSS 186
		
		Query: 230 YAEGGEYITKDISKVLKTSLAI------AEALKFNFGQAEISEASITETVK-VDVV-GSE 281
		              GG+   + I   ++ +         AE +K   G A   +      V+  ++  G  
		Sbjct: 187 VRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246
		
		Query: 282 EPVEVTERYLSEIISARIRHILDRVKQDLER------GRLLDLPGGIVLIGGGAIMPGVV 335
		               +    + E +   +  I+  V   LE+        + +   G+VL GGGA++  + 
		Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE--RGMVLTGGGALLRNLD 304
		
		Query: 336 EIAQEIFGVTV 346
		            +  E  G+ V
		Sbjct: 305 RLLMEETGIPV 315
		
		
SPs1546	SPs1553	N	Y	N	SPs1531	SPs1570
	SPs1546	-1	17	2.637359	glycerol-3-phosphate transporter
	SPs1547	-2	20	2.376344	NAD-dependent oxidoreductase
	SPs1548	-2	25	4.835520	3-ketoacyl-ACP reductase
	SPs1549	-1	28	5.630988	hypothetical protein
	SPs1550	0	28	5.417076	hypothetical protein
	SPs1551	-1	30	6.212024	hypothetical protein
	SPs1552	-2	26	5.778328	hypothetical protein
	SPs1553	-2	27	5.548153	hypothetical protein
	1545#SPs1546	TCRTETB#Tetracycline resistance protein TetB signature.	41	6e-06
		>TCRTETB#Tetracycline resistance protein TetB signature.
		          Length = 458
		
		 Score = 41.4 bits (97), Expect = 6e-06
		 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
		
		Query: 66  LTVSYGLAKFYMGALGDRVSLRKLFSISLGASALICILIGFFNSSMVVLGILLVLCGVVQ 125
		           LT S G A    G L D++ +++L    +  +    + IGF   S   L I+        
		Sbjct: 60  LTFSIGTA--VYGKLSDQLGIKRLLLFGIIINCFGSV-IGFVGHSFFSLLIMARFIQGAG 116
		
		Query: 126 GALAPA-SQAMIANYFPNKTRGGAIAGWNISQNMGSALLPL 165
		            A  PA    ++A Y P + RG A         MG  + P 
		Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157
		
		
	1547#SPs1548	DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...	99	3e-27
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
		           signature.
		          Length = 261
		
		 Score = 99.0 bits (246), Expect = 3e-27
		 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
		
		Query: 3   KVVLVTGCASGIGYAQARYFLRQGHHVYGVDKSDKPDLNGNFHFIKLDLSSELSPL---- 58
		           K+  +TG A GIG A AR    QG H+  VD + +               +E  P     
		Sbjct: 9   KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68
		
		Query: 59  -----------FKVVPSVDILCNTAGILDAYKPLLDVSDEEVEHLFDINFFATVKLTRHY 107
		                       + +  +DIL N AG+L     +  +SDEE E  F +N       +R  
		Sbjct: 69  SAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNASRSV 127
		
		Query: 108 LRRMVEKQSGVIINMCSIASFIAGGGGVAYTSSKHALAGFTRQLALDYAKDQIHIFGIAP 167
		            + M++++SG I+ + S  + +      AY SSK A   FT+ L L+ A+  I    ++P
		Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187
		
		Query: 168 GAVKTAM-----TASDFEP---GGLADWVARETPIGRWTEPDEVAELTGFLASGKARSMQ 219
		           G+ +T M        +       G  +      P+ +  +P ++A+   FL SG+A  + 
		Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247
		
		Query: 220 GEIVKIDGGWTL 231
		              + +DGG TL
		Sbjct: 248 MHNLCVDGGATL 259
		
		
	1549#SPs1550	INTIMIN#Intimin signature.	27	0.042
		>INTIMIN#Intimin signature.
		          Length = 939
		
		 Score = 27.3 bits (60), Expect = 0.042
		 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
		
		Query: 65  NGVKQSYPGEKEIKIINPSTQEVTRCYRISGWRADSQGSYTVTLDSPLQETDVVSLQIAD 124
		           NGV Q+         I   T  ++     +    +  G  TVTL S      VVS + A+
		Sbjct: 587 NGVAQA--NVPVSFNIVSGTAVLSA----NSANTNGSGKATVTLKSDKPGQVVVSAKTAE 640
		
		
	1552#SPs1553	BINARYTOXINA#Clostridial binary toxin A signature.	38	1e-05
		>BINARYTOXINA#Clostridial binary toxin A signature.
		          Length = 454
		
		 Score = 38.5 bits (89), Expect = 1e-05
		 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
		
		Query: 81  INTSLDKAKGKLSQLTPELRDQVAQLDAATHRLVIPWNIVVYRYVYETFLRDIGVSHADL 140
		           IN  L  + G L+   PEL  +V  ++ A     IP N++VYR          G     L
		Sbjct: 295 INNYL-ISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRS--------GPQEFGL 345
		
		Query: 141 TSYYRNHQFDPHILCKIK---------LGTRYTKHSFMSTT--ALKNGAMTHRPVEVRIC 189
		           T     + F+     KI+          G   T  +F+ST+  ++   A   R + +RI 
		Sbjct: 346 TLTSPEYDFN-----KIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRIN 400
		
		Query: 190 VKKGAKAAFVEPYSAVPSEVELLFPRGCQLEV--VGAYVSQDHKKLHIEA 237
		           + K +  A++        E E+L   G + ++  V +Y      KL ++A
		Sbjct: 401 IPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDA 450
		
		
SPs1603	SPs1610	N	Y	N	SPs1588	SPs1627
	SPs1603	-1	10	-1.411976	OxaA-like protein
	SPs1604	1	11	-2.163514	transcription elongation factor GreA
	SPs1605	-1	10	-1.242817	aminodeoxychorismate lyase
	SPs1606	-1	10	-0.649131	arylalkylamine n-acetyltransferase
	SPs1607	0	11	-0.898024	UDP-N-acetylmuramate--L-alanine ligase
	SPs1608	1	12	-0.790475	hypothetical protein
	SPs1609	1	13	-1.151513	SNF helicase
	SPs1610	1	16	-0.349294	GTP-binding protein EngA
	1602#SPs1603	60KDINNERMP#60kDa inner membrane protein signature.	136	1e-38
		>60KDINNERMP#60kDa inner membrane protein signature.
		          Length = 548
		
		 Score =  136 bits (344), Expect = 1e-38
		 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 22/231 (9%)
		
		Query: 38  WEFLGKPMSYFIDYFANNAGLGYGLAIIIVTIIVRTLILPLGLYQSWKASYQS-EKMAFL 96
		             F+ +P+   + +  +  G  +G +III+T IVR ++ PL      KA Y S  KM  L
		Sbjct: 333 LWFISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-----KAQYTSMAKMRML 386
		
		Query: 97  KPVFEPINKRIKQANSQEEKMAAQTELMAAQRAHGINPLGGIGCLPLLIQMPFFSAMYFA 156
		           +P  + + +R+      ++K     E+MA  +A  +NPLGG  C PLLIQMP F A+Y+ 
		Sbjct: 387 QPKIQAMRERLG-----DDKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLALYYM 439
		
		Query: 157 AQYTKGVSTSTFMG--IDLGSR--SLVLTAIIAALYFFQSWLSMMAVSEEQREQMKTMMY 212
		              +  +  + F     DL ++    +L  ++    FF   +S   V++      + +M 
		Sbjct: 440 LMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPM---QQKIMT 496
		
		Query: 213 TMPIMMIFMSFSLPAGVGLYWLVGGFFSIIQQ-LITTYLLKPRLHKQIKEE 262
		            MP++        P+G+ LY++V    +IIQQ LI   L K  LH + K++
		Sbjct: 497 FMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKK 547
		
		
	1605#SPs1606	SACTRNSFRASE#Streptothricin acetyltransferase signature.	32	7e-04
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.
		          Length = 173
		
		 Score = 31.8 bits (72), Expect = 7e-04
		 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 29/120 (24%)
		
		Query: 46  VALIDQEIVGYIEGPVVTTPILEDSLFHGVTKNPKTGGYIAITSLSIAKHFQQQGVGTAL 105
		           +  ++   +G I+                +  N    GY  I  +++AK ++++GVGTAL
		Sbjct: 69  LYYLENNCIGRIK----------------IRSN--WNGYALIEDIAVAKDYRKKGVGTAL 110
		
		Query: 106 LAALKDLVVAQQRTGLILTCHDYLIS---YYEMNGFINQGISESQHGGT--------LWY 154
		           L    +        GL+L   D  IS   +Y  + FI   +    +            WY
		Sbjct: 111 LHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIFWY 170
		
		
	1606#SPs1607	ACETATEKNASE#Acetate kinase family signature.	31	0.008
		>ACETATEKNASE#Acetate kinase family signature.
		          Length = 400
		
		 Score = 31.3 bits (71), Expect = 0.008
		 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
		
		Query: 304 IINDTII--IDDFA-----HHPTEIVATIDAARQKYPSKEIVAIFQPHTFTRTIA 351
		           +I D ++  I D       H+P  I   I A  Q  P   +VA+F    F +T+ 
		Sbjct: 103 LITDDVLKAITDCIELAPLHNPANIEG-IKACTQIMPDVPMVAVFDT-AFHQTMP 155
		
		
	1609#SPs1610	TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family ...	37	1e-04
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family
		           signature.
		          Length = 639
		
		 Score = 37.1 bits (86), Expect = 1e-04
		 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
		
		Query: 36  GVTRDRIYATGEWLNRQFSLIDTGGIDDVDAPFMEQIKHQAQIAMEEADVIVFVVSGKEG 95
		           G+T      + +W N + ++IDT G  D    F+ ++      ++   D  + ++S K+G
		Sbjct: 53  GITIQTGITSFQWENTKVNIIDTPGHMD----FLAEVYR----SLSVLDGAILLISAKDG 104
		
		Query: 96  VTDADEYVSKILYRTNTPVILAVNKVD 122
		           V      +   L +   P I  +NK+D
		Sbjct: 105 VQAQTRILFHALRKMGIPTIFFINKID 131
		
		
SPs1698	SPs1703	N	Y	N	SPs1683	SPs1722
	SPs1698	-1	20	3.904066	multiple sugar-binding ABC transporter
	SPs1699	-2	21	4.057779	leucine-rich protein
	SPs1700	-2	19	3.659036	streptokinase A
	SPs1701	-1	25	5.315017	D-tyrosyl-tRNA(Tyr) deacylase
	SPs1702	-2	25	5.020008	(p)ppGpp synthetase
	SPs1703	-1	21	5.273056	hypothetical protein
	1696#SPs1698	PF05272#Virulence-associated E family protein	35	6e-04
		>PF05272#Virulence-associated E family protein
		          Length = 892
		
		 Score = 34.7 bits (79), Expect = 6e-04
		 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
		
		Query: 34  IVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALY 89
		           +V  G  G GKST +  + GL+  S+    IG           +D          Y
		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
		
		
	1697#SPs1699	HTHFIS#FIS bacterial regulatory protein HTH signature.	34	6e-04
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 34.0 bits (78), Expect = 6e-04
		 Identities = 10/30 (33%), Positives = 19/30 (63%)
		
		Query: 243 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 272
		           AL +  GN ++ A  L ++RN+L+ K+ + 
		Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIREL 473
		
		
	1698#SPs1700	STREPKINASE#Streptococcus streptokinase protein signature.	801	0.0
		>STREPKINASE#Streptococcus streptokinase protein signature.
		          Length = 440
		
		 Score =  801 bits (2069), Expect = 0.0
		 Identities = 392/440 (89%), Positives = 409/440 (92%)
		
		Query: 1   MKNYLSIGVIALLFALTFGTVKPVHAIAGYGWLPDRPPVNNSQLVVSMAGIVEGTDKKVF 60
		           MKNYLS G+ ALLFALTFGTV  V AIAG  WL DRP VNNSQLVVS+AG VEGT++ + 
		Sbjct: 1   MKNYLSFGMFALLFALTFGTVNSVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQDIS 60
		
		Query: 61  INFFEIDLTSQHAHGGKTEQGLSPKSKPFATDNGAMPHKLEKADLLKAIQKQLIANVHSN 120
		           + FFEIDLTS+ AHGGKTEQGLSPKSKPFATD+GAM HKLEKADLLKAIQ+QLIANVHSN
		Sbjct: 61  LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMSHKLEKADLLKAIQEQLIANVHSN 120
		
		Query: 121 DGYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPVQNQ 180
		           D YFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKP+QNQ
		Sbjct: 121 DDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQ 180
		
		Query: 181 AKSVDVKYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGY 240
		           AKSVDV+YTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNK HPGY
		Sbjct: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGY 240
		
		Query: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKDREQAYGINKKSGLNEEINNTDLISEKY 300
		           TIYERDSSIVTHDNDIFRTILPMDQEFTYRVK+REQAY INKKSGLNEEINNTDLISEKY
		Sbjct: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQAYRINKKSGLNEEINNTDLISEKY 300
		
		Query: 301 YILKKGESPYDPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPCDKAK 360
		           Y+LKKGE PYDPFDRSHLKLFTIKYVDV+TNELLKSEQLLTASERNLDFRDLYDP DKAK
		Sbjct: 301 YVLKKGEKPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360
		
		Query: 361 LLYNNLDAFDIMDYTLTGKVEDNHDKNNRIVTVYMGKRPKGAKGSYHLAYDKDLYTEEER 420
		           LLYNNLDAF IMDYTLTGKVEDNHD  NRI+TVYMGKRP+G   SYHLAYDKD YTEEER
		Sbjct: 361 LLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420
		
		Query: 421 KAYSYLRDTETPIPDNPKDK 440
		           + YSYLR T TPIPDNP DK
		Sbjct: 421 EVYSYLRYTGTPIPDNPNDK 440
		
		
	1701#SPs1703	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	57	3e-13
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score = 56.6 bits (136), Expect = 3e-13
		 Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
		
		Query: 2   PEQPGEKAPEKSKEVTPAPEKPADKEANQTPE-RRNGNMAKTPVANNHRRLPATGEQANP 60
		             +        S+     P   A     Q P+     N  K P+    R+LP+TGE ANP
		Sbjct: 455 LAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANP 514
		
		Query: 61  FFTAAAVAVMTTAGVLAVTKRKENN 85
		           FFTAAA+ VM TAGV AV KRKE N
		Sbjct: 515 FFTAAALTVMATAGVAAVVKRKEEN 539
		
		
SPs1719	SPs1733	N	Y	N	SPs1704	SPs1743
	SPs1719	-1	11	1.394426	ATPase
	SPs1720	1	13	0.988356	atpase
	SPs1721	1	14	0.784270	hypothetical protein
	SPs1722	1	13	0.857389	hypothetical protein
	SPs1723	2	16	1.598081	laminin adhesion
	SPs1724	2	17	1.336075	C5A peptidase
	SPs1725	2	19	0.486660	M protein type 3
	SPs1726	1	23	0.702599	M protein trans-acting positive regulator (Mga)
	SPs1727	-1	23	1.125296	hypothetical protein
	SPs1728	-1	22	1.039076	hypothetical protein
	SPs1729	-1	22	-0.695922	histidine kinase
	SPs1730	-2	22	-0.548103	two-component response regulator
	SPs1731	-1	27	0.148595	ABC transporter permease
	SPs1732	1	29	0.740552	ABC transporter ATP-binding protein
	SPs1733	3	32	1.034798	ATP-binding cassette transporter-like protein
	1717#SPs1719	HTHFIS#FIS bacterial regulatory protein HTH signature.	29	0.024
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 28.6 bits (64), Expect = 0.024
		 Identities = 9/16 (56%), Positives = 12/16 (75%)
		
		Query: 45  IIGASGSGKSLLAHAI 60
		           I G SG+GK L+A A+
		Sbjct: 165 ITGESGTGKELVARAL 180
		
		
	1720#SPs1722	PF05616#Neisseria meningitidis TspB protein	34	0.002
		>PF05616#Neisseria meningitidis TspB protein
		          Length = 501
		
		 Score = 34.0 bits (77), Expect = 0.002
		 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
		
		Query: 197 IPKKDLSPSELAAAQAYWSQKQGRGARPSDY-RPTPAPGRRKAPIPDVTPNPGQGHQPD- 254
		           IP+ DL+P    A  A    +      P++   P   PG R  P PD   NP      D 
		Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369
		
		Query: 255 NGGYHPAPPRPNDASQNKHQRDEFKGK 281
		             G  P  P   D    +H+++  +G+
		Sbjct: 370 QPGTRPDSPAVPDRPNGRHRKERKEGE 396
		
		
	1721#SPs1723	ADHESNFAMILY#Adhesin family signature.	250	2e-84
		>ADHESNFAMILY#Adhesin family signature.
		          Length = 309
		
		 Score =  250 bits (640), Expect = 2e-84
		 Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 34/323 (10%)
		
		Query: 1   MKKGFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59
		           MKK   L+ + +S +++  C          Q + VV +   +  +TK ++GD  D+  ++
		Sbjct: 1   MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60
		
		Query: 60  QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVDVFEASKP 115
		             G   H +EP   DV    +ADL  Y+   LE    AW   L  N KK++   + A   
		Sbjct: 61  PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117
		
		Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGRLDPK 167
		                        V+ G+D   L         DPH W +       A NIAK+L   DP 
		Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164
		
		Query: 168 HKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225
		           +K+ Y KN K +  + ++L +E   KF K+    K  VT   AF Y +K +G+    I  
		Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224
		
		Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282
		           I+ E+E +P Q+K + + +++  V ++F E +V+ +    +++ T   +        +  
		Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284
		
		Query: 283 APSGNKTYLENLRANLEVLYQQL 305
		                 +Y   ++ NL+ + + L
		Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
		
		
	1722#SPs1724	SUBTILISIN#Subtilisin serine protease family (S8) signature.	107	3e-27
		>SUBTILISIN#Subtilisin serine protease family (S8) signature.
		          Length = 326
		
		 Score =  107 bits (268), Expect = 3e-27
		 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 47/226 (20%)
		
		Query: 119 KAGKGAGTVVAVIDAGFDKNHEAWRLTDKSKARYQSKEDLEKAKKDHGITYGEWVNDKVA 178
		              +G G  VAV+D G D +H                 DL KA+   G  + +       
		Sbjct: 36  NQTRGRGVKVAVLDTGCDADHP----------------DL-KARIIGGRNFTDDDEGDPE 78
		
		Query: 179 YYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 238
		            + DY+          HGTHV+G ++            + G  PEA LL+++V    G  
		Sbjct: 79  IFKDYNG---------HGTHVAGTIAATENE-----NGVVGVAPEADLLIIKVLNKQGSG 124
		
		Query: 239 DYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 298
		            Y     Q I  A+     +I+MS G           E  +A   A +  + ++ +AGN+
		Sbjct: 125 QYD-WIIQGIYYAIEQKVDIISMSLGGPED-----VPELHEAVKKAVASQILVMCAAGNE 178
		
		Query: 299 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT 344
		                +T            +G P   +  ++V + + D+  +E + 
		Sbjct: 179 GDGDDRT----------DELGYPGCYNEVISVGAINFDRHASEFSN 214
		
		
		
		 Score = 79.9 bits (197), Expect = 6e-18
		 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
		
		Query: 459 NATPKVLPTASGTK---LSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSM 515
		               +V+   +       S FS+         + D+ APG+DILS+V   KYA  SGTSM
		Sbjct: 192 GCYNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSM 245
		
		Query: 516 SAPLVAGIMGL-LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGA 574
		           + P VAG + L  Q    +   D+T  E        L+     L +       SP+ +G 
		Sbjct: 246 ATPHVAGALALIKQLANASFERDLTEPE----LYAQLIKRTIPLGN-------SPKMEGN 294
		
		Query: 575 GAVDAKKASA-ATMYVTDK 592
		           G +        + ++ T +
		Sbjct: 295 GLLYLTAVEELSRIFDTQR 313
		
		
	1723#SPs1725	GPOSANCHOR#Gram-positive coccus surface protein anchor signature.	212	1e-63
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.
		          Length = 539
		
		 Score =  212 bits (540), Expect = 1e-63
		 Identities = 281/586 (47%), Positives = 342/586 (58%), Gaps = 52/586 (8%)
		
		Query: 1   MAKNNTNRHYSLRKLKTGTASVAVALTVLGTGLVAGQTVKAD----ARSVNGEFPRHVKL 56
		           M KNNTNRHYSLRKLKTGTASVAVALTVLG GLV      +     +++   E  +    
		Sbjct: 1   MTKNNTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERAD 60
		
		Query: 57  KNEIEN-LLDQVTQLYTKHNSNYQQYNAQAGRLDLRQKAEYLKGLNDWAERLLQELNGED 115
		           K EIEN  L       + +N   + +N +        K +  K     +E+  +    E 
		Sbjct: 61  KFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEA 120
		
		Query: 116 VKKVLGKVAFEKDDLEKEVKELKEKIDKKEKEYQDLDKDFDLAKQGYVLSDKRHQQELEE 175
		            K  L K      +                                         + LE 
		Sbjct: 121 RKADLEKALEGAMNFSTADSA--------------------------------KIKTLEA 148
		
		Query: 176 KEKKVTEATAKVGQISEELETVKQKVESTMQDLTEKQNRVSQLEQELATTKQNAKEDFEL 235
		           ++  +    A + +  E          + ++ L  ++  +   + EL    + A      
		Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208
		
		Query: 236 AALANAADKQKLEAKIADLETKLKEAKEDFELAALGHQHAHNEYQAKLAEKDDQIKQLEE 295
		            +             +   +  L   K D E A  G  +      AK+   + +   LE 
		Sbjct: 209 DS--------AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260
		
		Query: 296 QKQILDASRKGTARDLEAVRQAKKATEAELNNLKAELAKVTEQKQILDASRKGTARDLEA 355
		           ++  L+ + +G      A     K  EAE   L+AE A +  Q Q+L+A+R+   RDL+A
		Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320
		
		Query: 356 VRQAKAQVEAALKQLEEQNRISEASRKGLRRDLDASREAKKQVEKDLANLTAELDKVKEE 415
		            R+AK Q+EA  ++LEEQN+ISEASR+ LRRDLDASREAKKQ+E       AE  K++E+
		Sbjct: 321 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE-------AEHQKLEEQ 373
		
		Query: 416 KQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAEL 475
		            +IS+ASRQ LRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAEL
		Sbjct: 374 NKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAEL 433
		
		Query: 476 QAKLEAEAKALKEQLAKQAEELAKLRAGKASDSQIPDTKPGNKAVPGKGQAPQAGTKPNQ 535
		           QAKLEAEAKALKE+LAKQAEELAKLRAGKASDSQ PD KPGNKAVPGKGQAPQAGTKPNQ
		Sbjct: 434 QAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQ 493
		
		Query: 536 NKAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 581
		           NKAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN
		Sbjct: 494 NKAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 539
		
		
	1724#SPs1726	PF05043#Transcriptional activator	521	0.0
		>PF05043#Transcriptional activator
		          Length = 493
		
		 Score =  521 bits (1343), Expect = 0.0
		 Identities = 108/475 (22%), Positives = 218/475 (45%), Gaps = 18/475 (3%)
		
		Query: 34  ELSKALNISMLTLQTCLTNMQ-FMKEVGGITYKNGYITIWYHQHCGLQEVYQKALRHSQS 92
		           EL++ LN +   ++  L++++    ++   +  NG   I       ++ VY    +HS  
		Sbjct: 30  ELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINT-DDSDIEMVYHHFFKHSTH 88
		
		Query: 93  FKLLETLFFRDFNSLEELAEELFVSLSTLKRLIKKTNAYLMHTFGITILTSPVQVSGDEH 152
		           F +LE +FF +    E + +E ++S S+L R+I + N  +   F   +  +PVQ+ G+E 
		Sbjct: 89  FSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNER 148
		
		Query: 153 QIRLFYLKYFSEAYKISEWPFGEILNLKNCERLLSLMIKEVDVRVNFTLFQHLKILSSVN 212
		            IR F+ +YFSE Y   EWPF    + +   +LL L+ KE    +N +  + LK+L   N
		Sbjct: 149 DIRYFFAQYFSEKYYFLEWPFEN-FSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTN 207
		
		Query: 213 LIRYYKGHSAVYDNKKTSHRFSQLIQSSLEIQDLSRLFYLKFGLYLDETTIAEMFSNHVN 272
		           L R   GH    D    + +    +  +  I+ +++ F  ++ + LDE  + ++F ++  
		Sbjct: 208 LYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQ 267
		
		Query: 273 DQLEIGYAF--DSIKQDSPTGCRKVTNWVHLTNWVHLLDELEIRLNLSVTNKYEVAVILH 330
		               I  +     +K+DS      V    HL +    +D++ ++  + + NK  +   LH
		Sbjct: 268 KMFFIDESLFMKCVKKDS-----YVEKSYHLLS--DFIDQISVKYQIEIENKDNLIWHLH 320
		
		Query: 331 NTTVLKEEDITANYLFFDYKKSYLNFYKQEHPHLYKAFVAGVEKLMRSEKEPISTELTNQ 390
		           NT  L  +++   ++ FD K + +  ++   P         +   + + +   S+ + N 
		Sbjct: 321 NTAHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNH 380
		
		Query: 391 LIYAFFITWENSFLEVNQKDEKIRLLVI----ERSFNSVGNFLKKYIGEFFSITNFNELD 446
		           L Y F    ++  + + Q   K+++LV+    +     V   L  Y    F +  + EL+
		Sbjct: 381 LSYTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELE 440
		
		Query: 447 ALTIDLEEIEKQYDVIVTDVMVGKSDELEIFFFYKMIPEAIIDKLNAFLNISSAD 501
		                LE  +  YD+I+++ ++   +   + +   +   ++I  LNA + I   +
		Sbjct: 441 LSKESLE--DSPYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE 493
		
		
	1726#SPs1728	IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.	40	2e-05
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
		          Length = 1541
		
		 Score = 40.4 bits (94), Expect = 2e-05
		 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 6/151 (3%)
		
		Query: 42   TADTDTDDESETAKKDKKSKETASQHDTQKDHKPSHNHPTPPSNDTKQTDQASSEATDKP 101
		            T +T T +  ETA  +K+ K       TQ+   P       P  +  +T Q  +E   + 
		Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEV--PKVTSQVSPKQEQSETVQPQAEP-ARE 1148
		
		Query: 102  NKDKNDTKQPNSSDQSTPSPKDQSSQKESQNKDGRPTPSPDQQKDQTPDKTPEKSADKTP 161
		            N    + K+P S   +T    D     +  + +     +     +               
		Sbjct: 1149 NDPTVNIKEPQSQTNTTA---DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205
		
		Query: 162  EKGPEKATEKTPEPNRDAPKPIQPPLAAAAP 192
		               P   +E + +P     + ++       P
		Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236
		
		
	1728#SPs1730	HTHFIS#FIS bacterial regulatory protein HTH signature.	83	1e-20
		>HTHFIS#FIS bacterial regulatory protein HTH signature.
		          Length = 484
		
		 Score = 83.0 bits (205), Expect = 1e-20
		 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
		
		Query: 3   KILVVEDDDTISQVICEFLKANNYDPDCVFDGQAALDKWQTTSYDLIILDIMLPSLSGLE 62
		            ILV +DD  I  V+ + L    YD     +             DL++ D+++P  +  +
		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64
		
		Query: 63  VLKTIRKT-SDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVLRVSTP 121
		           +L  I+K   D+P+++++A +   T + +      DY+ KPF    LI  I   L     
		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
		
		Query: 122 DEKRQIGD 129
		              +   D
		Sbjct: 125 RPSKLEDD 132
		
		
	1731#SPs1733	RTXTOXIND#Gram-negative bacterial RTX secretion protein D signat...	55	3e-10
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D
		           signature.
		          Length = 478
		
		 Score = 54.8 bits (132), Expect = 3e-10
		 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
		
		Query: 60  DISLTLAGEVTANNSSKVKIDSSKGEVKEVFVKKGDVVKVGQPLFSYETSQRLTAQSSEF 119
		           +I  T  G++T +  SK         VKE+ VK+G+ V+ G  L       +LTA  +E 
		Sbjct: 81  EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL------KLTALGAEA 134
		
		Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESLLEQIRSAEDSVSQAL 179
		           D      + Q +   A L+   Y      I   K      PDE   + +   E     +L
		Sbjct: 135 DTL----KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
		
		Query: 180 SDAKTADSDVKTAQIELDKANATA 203
		              + +    +  Q EL+     A
		Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRA 214
		
		
		
		 Score = 39.4 bits (92), Expect = 2e-05
		 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%)
		
		Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESL---LEQIRSAEDSVS 176
		           D  +  ++  +AK     +   Y   VNE+   KS+      E L    E     +   +
		Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298
		
		Query: 177 QALSDAKTADSDVKTAQIELDKANATATTEKGKLEYDTVKSDTAGTIVSLNTDLPNQSKS 236
		           + L   +    ++    +EL K          + +   +++  +  +  L          
		Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV- 350
		
		Query: 237 KKENETFMEII-DKSKMLVKGNISEFDRDKLKIGQKVEV-IDRKDNSK--KWTGKVTQVG 292
		               ET M I+ +   + V   +   D   + +GQ   + ++    ++     GKV  + 
		Sbjct: 351 -TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
		
		
SPs1802	SPs1807	N	Y	N	SPs1787	SPs1826
	SPs1802	-3	11	0.658179	hypothetical protein
	SPs1803	-1	10	0.731187	DNA mismatch repair protein
	SPs1804	-1	10	0.795690	DNA mismatch repair protein MutS
	SPs1805	0	15	0.392050	hypothetical protein
	SPs1806	-1	14	0.532489	arginine repressor ArgR
	SPs1807	-2	13	1.176222	arginyl-tRNA synthetase
	1800#SPs1802	TCRTETA#Tetracycline resistance protein signature.	53	1e-09
		>TCRTETA#Tetracycline resistance protein signature.
		          Length = 399
		
		 Score = 52.5 bits (126), Expect = 1e-09
		 Identities = 67/331 (20%), Positives = 123/331 (37%), Gaps = 20/331 (6%)
		
		Query: 45  TGLLMMITSLMGFVGTLYGGHLSDALGRKKVIMIGSVGTTLGWFLTILANLPNAAIPWLT 104
		            G+L+ + +LM F      G LSD  GR+ V+++   G  + + +   A        W+ 
		Sbjct: 45  YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-----FLWVL 99
		
		Query: 105 FAGILLVEIASSFYGPAYEAMLIDLTDESNRRFVYTINYWFINIAVMFGAGLSGLFYDHH 164
		           + G ++  I +   G    A + D+TD   R   +          ++ G  L GL     
		Sbjct: 100 YIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFS 158
		
		Query: 165 FLALLVALLLVNVLCFGVAYYYFDETRPETH--AFDHGKGLLDSFRNYRKVFHDRAFVLF 222
		             A   A   +N L F    +   E+               L SFR         A  + 
		Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR--------WARGMT 210
		
		Query: 223 TLGAIFSGSIWMQMDNYVPVHLKLYFQPTAVLGFQVTSSKMLSLMVLTNTLLIVLFMTVV 282
		            + A+ +    MQ+   VP  L + F          T    L+   + ++L   +     
		Sbjct: 211 VVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT--- 267
		
		Query: 283 NKLTEKWKLLPQLVVGSLLFTLGMLLAFTFTQFYAIWLSVVLLTFGEMINVPASQVLRAD 342
		             +  +      L++G +    G +L    T+ +  +  +VLL  G +  +PA Q + + 
		Sbjct: 268 GPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG-MPALQAMLSR 326
		
		Query: 343 MMDHSQIGSYTGFVSMAQPLGAILASLLVSV 373
		            +D  + G   G ++    L +I+  LL + 
		Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357
		
		
	1802#SPs1804	SSPAMPROTEIN#Salmonella surface presentation of antigen gene typ...	32	0.004
		>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M
		           signature.
		          Length = 147
		
		 Score = 32.0 bits (72), Expect = 0.004
		 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
		
		Query: 192 NLLLSYEETVYEDKSLIDGQLTTVELTAAGKLLQYVHKTQMRELSH--------LQALVH 243
		           ++LL Y++   ED+ L   +   VE  A  KLL    + + R+LS          Q++V 
		Sbjct: 23  SILLRYQD---EDRRLQVEEEAIVEQIAGLKLLLDTLRAENRQLSREEIYALLRKQSIVR 79
		
		Query: 244 YEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKTAMGM-RLLRSWIDRPLVSK 302
		            +IKD        +     +E  R   +  S YWL  E      + R  R +I R +  +
		Sbjct: 80  RQIKDLELQIIQIQEKRSELEKKREEFQEKSKYWLRKEGNYQRWIIRQKRLYIQREIQQE 139
		
		Query: 303 EAILERQEII 312
		           EA  E +EII
		Sbjct: 140 EA--ESEEII 147
		
		
	1804#SPs1806	ARGREPRESSOR#Bacterial arginine repressor signature.	131	2e-42
		>ARGREPRESSOR#Bacterial arginine repressor signature.
		          Length = 149
		
		 Score =  131 bits (332), Expect = 2e-42
		 Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
		
		Query: 1   MNKMERQQQIKRIIQAEHIGTQEDIKNHLQKEGIVVTQATLSRDLRAIGLLKLRDEQGKL 60
		           MNK +R  +I+ II A  I TQ+++ + L+K+G  VTQAT+SRD++ + L+K+    G  
		Sbjct: 1   MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60
		
		Query: 61  YYSL-SEPVATPFSPEVRF---YVLKVDRAGFMLVLHTNLGEADVLANLIDNDAIEDILG 116
		            YSL ++    P S   R      +K+D A  ++VL T  G A  +  L+DN   E+I+G
		Sbjct: 61  KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120
		
		Query: 117 TIAGADTLLVICRDEEIAKRFEKDL 141
		           TI G DT+L+ICR  +  K  +K +
		Sbjct: 121 TICGDDTILIICRTHDDTKVVQKKI 145
		
		
	1805#SPs1807	BINARYTOXINA#Clostridial binary toxin A signature.	30	0.036
		>BINARYTOXINA#Clostridial binary toxin A signature.
		          Length = 454
		
		 Score = 29.6 bits (66), Expect = 0.036
		 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
		
		Query: 208 EEAREWFRKLEDGDKEATELWQWFRDESLLEFNRLYDQLHVTFDSYNGEAFYNDKMDEVL 267
		           +EA    + L+  +KEA EL++    +   + +  Y Q    F  Y  E+  N +  E  
		Sbjct: 63  KEAERVEKNLDTLEKEALELYK----KDSEQISN-YSQTRQYFYDYQIES--NPREKEYK 115
		
		Query: 268 ELLEA 272
		            L  A
		Sbjct: 116 NLRNA 120
		
		
