>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.010 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 92 NSTATQQENTKQNQAIEQNGTTQAKEPQSKQEPKKTLHPDE-------PWLDYDPKAHKC 144 N ++ T I QA P ++ DE P + Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 145 LQERQKEEIQEKAQSNNSDEPWIEHGKRMQEKAKAHYQACLEREKAKELAKEQNNAQKEV 204 +Q+ + EK + + ++ + + ++AK++ +A + + + E Q Sbjct: 1042 ENSKQESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 205 KKEMPTID 212 KE T++ Sbjct: 1100 TKETATVE 1107 Score = 28.1 bits (62), Expect = 0.037 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 41 RQQAKTL-KNLDSATQSVGVNAIK-EQNKANKNSEQPKNSQNEPRQETTNAQTNSTATQQ 98 +Q++KT+ KN AT++ N ++ K+N + N + ET QT T Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 99 ENTKQNQAIEQNGTTQAKEPQSKQEPKKTLHPDEPWLDYDPKAHKCLQERQKEEIQEKAQ 158 K+ +A + TQ + Q K + +P E ++ Q Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR-----ENDPTVNIKEPQ 1159 Query: 159 SNNSDEPWIEHGKR 172 S + E + Sbjct: 1160 SQTNTTADTEQPAK 1173
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 5e-10 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVINTIALGYFYNKEYGKSILD 82 LF I ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.010 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 48 EMERQNRALSPEQEEANTTTTI---AEENPTKDPPLPLETVVQEKENKQENKQEQEKETK 104 E+E++N+ + + + ++ E V ++ + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 105 PKQNSASPTQNHQKALTT 122 KQ S + +N Q A T Sbjct: 1044 SKQESKTVEKNEQDATET 1061 Score = 27.7 bits (61), Expect = 0.038 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%) Query: 51 RQNRALSPEQEEANTTTTIAEENPTKDPPLPLETVVQEKENKQENKQEQEKETKPKQNSA 110 + N E T TT +E T EKE K + + E+ +E + Sbjct: 1081 QTNEVAQSGSETKETQTTETKETAT-----------VEKEEKAKVETEKTQEVPKVTSQV 1129 Query: 111 SPTQNHQKA 119 SP Q + Sbjct: 1130 SPKQEQSET 1138
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 29.0 bits (65), Expect = 0.016 Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 5/74 (6%) Query: 36 TPVKKSATIIDLGGAKAQIIRNIPKSIRKNFIAAHPMCGTEFYGPKASVKGLYENALVIL 95 P + L GA + ++RK + Y L Sbjct: 18 APAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKLYDIPLLRSTLPGSQRY-----AL 72 Query: 96 CDLEDSGTEQVEIA 109 L + E + +A Sbjct: 73 IHLTNYADETISVA 86
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.013 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 159 GYDNNPNSPSNNAINGKDGANGSNGYGINGNDGINGSSGSNGNNSNHNAVGSGIDTDGVL 218 G++ +S S N ING G G G+ G +GS S+ NN GSGI G Sbjct: 8 GHNTGAHSTSGN-ING-----GPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 219 GV-DGVNGSNSSSGVSVGG 236 G +G NS G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGG 79 Score = 28.5 bits (63), Expect = 0.024 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 159 GYDNNPNSPSNNAINGKDGANGSNGYGINGNDGINGSSGSNGNNSNHNAVGSGIDTDGVL 218 +NNP + + G +G G NGN G GS ++ V G Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGG-GSGTGGNLSAVAAPVAFGFPALSTP 98 Query: 219 GVDGVNGSNSSSGVS 233 G G+ S S+ +S Sbjct: 99 GAGGLAVSISAGALS 113
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 26.9 bits (59), Expect = 0.048 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 13/91 (14%) Query: 1 MFYTYHTEQPPLNEEQHKILQNAIANNEVDKRVLGVWKFN-----------SENQNNLTQ 49 FY Y E P E+++K L+NAI+ N++DK + + + +ENQN ++ Sbjct: 99 YFYDYQIESNP-REKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISL 157 Query: 50 NNTNEMVKNTTNDDLIKDNNIKQNNIIDNNN 80 NE +K T D L K + K ++ + N Sbjct: 158 EKFNE-LKETIQDKLFKQDGFKDVSLYEPGN 187
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.039 Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 20/172 (11%) Query: 249 ETELDALEKQARNNKSFRHESYFYKVL-GSATSQIESLKKRENALSDHLDSLKSLLEKTH 307 + ++E E YF V +K++ + + + L+K Sbjct: 154 QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 308 WEKEKFTPPTNEKE-----LNQQLKEIKWLNKESLTPKNTYKKIQKLAVCKSPLIKDYLY 362 E+ N E +L + L + K+ + + Y+ Sbjct: 214 AERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK----------YVE 263 Query: 363 TTKKLFATQKKIIALEKDYKDLK----VLKEEFSKDLEADLSHSKKRFELYT 410 +L + ++ +E + K ++ + F ++ L + L T Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLT 315
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.1 bits (73), Expect = 0.033 Identities = 42/236 (17%), Positives = 88/236 (37%), Gaps = 29/236 (12%) Query: 1238 EQDYKIIKDFMDKVGKNNINLSEQTLNEYFIHHPENILGHLSLEKTRYSFETNGEQI--- 1294 ++ ++ KD ++ N + T N F+ L K + ++++ + + Sbjct: 229 KEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYK-KIQYDSSSKLLENF 287 Query: 1295 --YKYELQALEDKNLDLSQALNQAIEKLPKGVYQYHKTTLKTDALIIDANNERYQEVQKL 1352 K + L+ K+ DL + + I + K + T K + + + ++ +L Sbjct: 288 YYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGEL 341 Query: 1353 IK----NLERG-ELVKWDDLYFQLEQNNEMGIFLKPTKINSKVQDSRLKAYFKIKDALND 1407 + L++G ++ + Y E + + I L K S+ S K Y K+K + Sbjct: 342 LTANIYALKKGLSHIELANYY--SENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEA 399 Query: 1408 L------TSAELNPLSS---DLELESKRVRLNLVYDEFVKKFGYLNENKNRKDIKQ 1454 ELN L S ++ + + E ++ GY+ K K K Sbjct: 400 ANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.036 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.4 bits (99), Expect = 1e-06 Identities = 17/147 (11%), Positives = 45/147 (30%) Query: 3 KAQEANTKLNRERNDLAREKENLTKANTELKTERDNLNNQLNASQKQVKELEQSQQVLKN 62 N L ++L E N + + +++ + + +LE++ + N Sbjct: 75 DLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMN 134 Query: 63 EKAELTKDKENLTKANAELKTENQKLTQEKTELTEKNKALTTEKEKLNTDLSNAKSQVIQ 122 + + L A L L + + A + + + L + + +++ + Sbjct: 135 FSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 194 Query: 123 LNQEKDKLEQKYAPYKKLEKLYEVFSE 149 L + + K E Sbjct: 195 LEKALEGAMNFSTADSAKIKTLEAEKA 221 Score = 40.0 bits (93), Expect = 6e-06 Identities = 29/144 (20%), Positives = 54/144 (37%) Query: 2 LKAQEANTKLNRERNDLAREKENLTKANTELKTERDNLNNQLNASQKQVKELEQSQQVLK 61 A+E K ++ ++ A + + L +L+ + N A ++K LE + L Sbjct: 95 SNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALA 154 Query: 62 NEKAELTKDKENLTKANAELKTENQKLTQEKTELTEKNKALTTEKEKLNTDLSNAKSQVI 121 KA+L K E + + + L EK L + L E + +++ Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 214 Query: 122 QLNQEKDKLEQKYAPYKKLEKLYE 145 L EK L + A +K + Sbjct: 215 TLEAEKAALAARKADLEKALEGAM 238 Score = 38.1 bits (88), Expect = 3e-05 Identities = 28/133 (21%), Positives = 53/133 (39%) Query: 3 KAQEANTKLNRERNDLAREKENLTKANTELKTERDNLNNQLNASQKQVKELEQSQQVLKN 62 A +T + + L EK L +L+ + N A ++K LE + L+ Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 63 EKAELTKDKENLTKANAELKTENQKLTQEKTELTEKNKALTTEKEKLNTDLSNAKSQVIQ 122 +AEL K E + + + L EK L + L + + LN + + + + Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 123 LNQEKDKLEQKYA 135 + K +LE ++ Sbjct: 321 SREAKKQLEAEHQ 333 Score = 34.7 bits (79), Expect = 4e-04 Identities = 26/129 (20%), Positives = 51/129 (39%) Query: 3 KAQEANTKLNRERNDLAREKENLTKANTELKTERDNLNNQLNASQKQVKELEQSQQVLKN 62 L E+ L + L KA + ++ + + LE + L++ Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 63 EKAELTKDKENLTKANAELKTENQKLTQEKTELTEKNKALTTEKEKLNTDLSNAKSQVIQ 122 + L ++++L + + ++L E +L E+NK ++ L DL ++ Q Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQ 362 Query: 123 LNQEKDKLE 131 L E KLE Sbjct: 363 LEAEHQKLE 371 Score = 30.4 bits (68), Expect = 0.007 Identities = 34/145 (23%), Positives = 62/145 (42%) Query: 1 MLKAQEANTKLNRERNDLAREKENLTKANTELKTERDNLNNQLNASQKQVKELEQSQQVL 60 L E+ L EK +L + L R +L L+AS++ K+LE Q L Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335 Query: 61 KNEKAELTKDKENLTKANAELKTENQKLTQEKTELTEKNKALTTEKEKLNTDLSNAKSQV 120 + + +++L + + ++L E +L E+NK ++ L DL ++ Sbjct: 336 EEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAK 395 Query: 121 IQLNQEKDKLEQKYAPYKKLEKLYE 145 Q+ + ++ K A +KL K E Sbjct: 396 KQVEKALEEANSKLAALEKLNKELE 420
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.5 bits (89), Expect = 1e-05 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 3/208 (1%) Query: 15 RKELEARIGELEDENTELLREREYLAAETSELKDDNDQLRQKNDKLFITKDKLTKENAAL 74 +ELEAR +LE + +A+ L+ + L + L + + A Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 75 TTENDRLNHQVIALTKEQDSLKQERAQLQDAHGFLEKLCADLEKDNQHLTDKLKKLESTQ 134 + + L + AL Q L++ + LE + L + LE Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 135 KNLENSNDQLLQVKEKIAEEKTELEREMVRLKSLEATGKSDLDLHNR---RLASANQDLK 191 + N + + + EK LE L+ + + L + L+ Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 192 RQNRKLEEENIALKERVDGLKEQLSKQQ 219 + LE ++ L L+ L + Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASR 322 Score = 37.0 bits (85), Expect = 4e-05 Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 3/210 (1%) Query: 13 QVRKELEARIGELEDENTELLREREYLAAETSELKDDNDQLRQKNDKLFITKDKLTKENA 72 +L L+D N EL E + + + K +L K L K Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 73 ALTTENDRLNHQVIALTKEQDSLKQERAQLQDAHGFLEKLCADLEKDNQHLTDKLKKLES 132 + + ++ L E+ +L +A L+ A + L + LE+ Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 133 TQKNLENSNDQLLQVKEKIAEEKTELEREMVRLKSLEAT---GKSDLDLHNRRLASANQD 189 Q LE + + + + + LE E L + +A + ++ + Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 190 LKRQNRKLEEENIALKERVDGLKEQLSKQQ 219 L+ + LE L++ ++G + Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADS 280 Score = 33.9 bits (77), Expect = 4e-04 Identities = 28/206 (13%), Positives = 63/206 (30%) Query: 16 KELEARIGELEDENTELLREREYLAAETSELKDDNDQLRQKNDKLFITKDKLTKENAALT 75 K L+ EL +E + + SE +L + L + + A + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 76 TENDRLNHQVIALTKEQDSLKQERAQLQDAHGFLEKLCADLEKDNQHLTDKLKKLESTQK 135 + L + AL + L++ + LE + L + +LE + Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 136 NLENSNDQLLQVKEKIAEEKTELEREMVRLKSLEATGKSDLDLHNRRLASANQDLKRQNR 195 N + + + EK L L+ + + ++ + + Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 196 KLEEENIALKERVDGLKEQLSKQQNH 221 + E AL+ ++ +K + Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTL 286 Score = 32.3 bits (73), Expect = 0.001 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 3/205 (1%) Query: 16 KELEARIGELEDENTELLREREYLAAETSELKDDNDQLRQKNDKLFITKDKLTKENAALT 75 LEAR ELE + +A+ L+ + L + L + + A + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 76 TENDRLNHQVIALTKEQDSLKQERAQLQDAHGFLEKLCADLEKDNQHLTDKLKKLESTQK 135 + L + AL Q L++ + LE + L + LE + Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 136 NLENSNDQLLQVKEKIAEEKTELEREMVRLKSLEATGKSDLDLHNRRLAS---ANQDLKR 192 L + L + + E K +LE E +L+ ++ R L + A + L+ Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 193 QNRKLEEENIALKERVDGLKEQLSK 217 +++KLEE+N + L+ L Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDA 390 Score = 28.9 bits (64), Expect = 0.016 Identities = 26/128 (20%), Positives = 47/128 (36%) Query: 15 RKELEARIGELEDENTELLREREYLAAETSELKDDNDQLRQKNDKLFITKDKLTKENAAL 74 K LEA L +L + E ++ L + L + +L K Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 75 TTENDRLNHQVIALTKEQDSLKQERAQLQDAHGFLEKLCADLEKDNQHLTDKLKKLESTQ 134 + + ++ L E+ +L+ E+A L+ L L +D + K+LE+ Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 135 KNLENSND 142 + LE N Sbjct: 333 QKLEEQNK 340
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1041 bits (2694), Expect = 0.0 Identities = 352/569 (61%), Positives = 441/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKF 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNFGFLAKGNVSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MN F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNS 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+ Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 4e-05 Identities = 59/325 (18%), Positives = 113/325 (34%), Gaps = 22/325 (6%) Query: 65 KVAQNTASNDSQEATTLENTASTDNITATTDETYTKSTDTTVAGTAQKVETDNTAVQSAE 124 +V + + D+ TT N + + +E + + V A ++ T + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 125 QTLKTDVAKVQ------ADASAKDFDETTFQADQAVEQTAETNLQKAENQLTKDQNTLET 178 ++ + A ++ + +A QT E +E + T+ T ET Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 179 ALKD-QTPSTPTTPPTKEEPKHTASSGTPTPSTPPAKEEPKHTASTPTPSTIGVASQLVK 237 A + + + T T+E PK T+ P +E+ + P+ + +K Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTS-------QVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 238 DTTTVNNLKSVSVSGMNTTLSGVKTMSQQSATIGNLLNSSTDLSSVIPNAQGLSSAFSAL 297 + + N + + T S V+ +S T+ N NS + A + S Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTV-NTGNSVVENPENTTPATTQPTVNSES 1215 Query: 298 ES-AQNTLKGYLDSSSATIGQLTNGSN--AVVGALDKAINQVDMALSDLRATDTQKTQAV 354 + +N + + S + T SN + V D + LSD RA K Q V Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA----KAQFV 1271 Query: 355 TLATTGSSATTTDAINFLNALKNNL 379 L + + + N + N+ Sbjct: 1272 ALNVGKAVSQHISQLEMNNEGQYNV 1296 Score = 38.1 bits (88), Expect = 1e-04 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 18/268 (6%) Query: 52 KLTSDSPTQQQDQKVAQNTASNDSQEATTLENTASTDNITATTDETYTKSTDTTVAGTAQ 111 K D+ + A ++ + T A + + T T T TK T T Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 112 KVETDNTAVQSAEQTLKTDVAKVQADASAKDFDETTFQADQAVEQTAETNLQKAENQLTK 171 KVET+ T +V KV + S K T Q + + + E Q Sbjct: 1113 KVETEKTQ----------EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 172 DQNTLETALKDQTPSTPTTPPTKEEPKHTASSGTPTP--STPPAKEEPKHTASTPTPSTI 229 + +T S P T+ +T +S P +TP + ++ S+ P Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222 Query: 230 ------GVASQLVKDTTTVNNLKSVSVSGMNTTLSGVKTMSQQSATIGNLLNSSTDLSSV 283 V + TT+ N+ +V++ + +T + ++ LN +S Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQH 1282 Query: 284 IPNAQGLSSAFSALESAQNTLKGYLDSS 311 I + + + + ++ SS Sbjct: 1283 ISQLEMNNEGQYNVWVSNTSMNKNYSSS 1310
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.022 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 375 HTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVAD 434 H++++ + K++Q D V LD IN + + +++ +E R + A Sbjct: 41 HSDQKDNKKLDQ----KDQVNQALDTINKVTED-----VSSKLEGVRESSLELVESNDAG 91 Query: 435 EVRNLAGRTQKSLAEINSTIMVIVQEINAVSSQMNLNSQKMERLSDMSK-SVQETYEKMS 493 V+ G + ++++ +V QE V+ + ++ ++ +MSK +VQET + +S Sbjct: 92 VVKKFVG-SMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVS 150 Query: 494 SNLSSVVSDSNQSMDDYAKSGHQIEVMVSDFAEVEKVASKTLA 536 + Q M + + + ++E+ +FA+VE+V +A Sbjct: 151 VAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMA 193
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 29.5 bits (66), Expect = 0.039 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 11/189 (5%) Query: 382 RKDVAYIYKFANTLIGVHITGENLLKYMEWSYRFYNQLQPGDLTI-SFNENIRGYNFDMF 440 ++ VA + K + + I G N ++++ + Q G + F++ +R + + Sbjct: 87 QQCVASVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQEGKMLDAWFSDILRLFLLCKY 146 Query: 441 SGV--KYQVDVTKPAGQRIINPTINNIPIDPKAIYKLAINNYRFGTLSTTLNLVTDTDR- 497 G+ V + I+ I+N+ S + Sbjct: 147 GGLWIDATVYMFDKVPNYIVESNRFMFQSSFLESETTHISNWLIFVKSKNDPFLVGLKNS 206 Query: 498 ---YYDSYDALQDSGQIRDLIIKYITEEKGGK--VTPELEGNWE--IINYDFKNPLLEKL 550 Y + D D + ++ K N ++ Y P + Sbjct: 207 MVTYLKKKEKPADYYIFHDFVSVMAVSKEYSKYWKEIPYVNNVNPHMLQYLGNLPYDNSM 266 Query: 551 REKLKEGSI 559 +K S Sbjct: 267 FNYIKSTSP 275
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 226 bits (577), Expect = 3e-79 Identities = 59/145 (40%), Positives = 90/145 (62%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VR+A + GD I +D+RF PNKD + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKA---TEVPAS 120 +RNH ++D SPMGC+TGFY++++ + +V + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAKNLARAFLD 145 NE QCG AA H+L+ AK +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.021 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 146 FDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLDAIQRG 205 F +L ++K+ +++ ++ VEE YL + ++ +L + Sbjct: 60 FSERKELSLDKRKL------SDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNS 113 Query: 206 EVLEIVALIAYLNSLGN 222 + + L AYL Sbjct: 114 PNISLSQLKAYLEGKSE 130
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 193 bits (491), Expect = 4e-64 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.004 Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 4 SSTKKDYTKYSEKQLVNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++VN+I+ +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 2e-22 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 6/199 (3%) Query: 11 KVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------ESVDVDVSD 64 K+A ITGA+ GIG A L QG + A+ + + +L E+ DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 SNALKEVFSNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQFCL 124 S A+ E+ + I + D+L+N AG G + EE + FSVN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPG 184 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 PVKSNWEKTAFSVENFESE 203 +++ + + ++ EN + Sbjct: 189 STETDMQWSLWADENGAEQ 207
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.015 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALS 359 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L +V+KA+S Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLA----KKDVAKAIS 234
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.8 bits (62), Expect = 0.008 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 35 ALGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLIEKLFKKQS 85 L+ L + S + G + I IN ++ +++F +S Sbjct: 87 CFPLLTVAALMAIASHVV-QYGFLISGEAIKPDIKKINPIEGAKRIFSIKS 136
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 4e-04 Identities = 55/293 (18%), Positives = 92/293 (31%), Gaps = 34/293 (11%) Query: 41 KESSDHHLDNPTETQTHFDEDKLEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNK 100 + + L NP E + T + D S SN + VD Sbjct: 973 NVNGRYDLYNP-EVEKRNQTVDTTNITTPNNIQADVPSVPSNN--------EEIARVDEA 1023 Query: 101 RPFTQQKDLDEETQELNEEDDQENNGYQEETQIDLIDDETSKKTQQHSPQDLSNEETTEA 160 ET E E N QE ++ + + ++ T Q+ + +A Sbjct: 1024 PVPPPAPATPSETTETVAE-----NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA 1078 Query: 161 NHFEDSSKESKESSDQHLDNPAETQTQETKTHFDEYKLEETQTQMDSEGNETSESSNGSL 220 N + +S + ETQT ETK K E+ + + + +S S Sbjct: 1079 NTQTNEVAQSGSET-------KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 221 ADKLFKKARKLVDNKRPFTQQKDLDEETQELNEEDDQENNGYQEETQIDLIDDETSKKTQ 280 + + + + R ++ E + N D E +ET ++ T T Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP--AKETSSNVEQPVTESTTV 1189 Query: 281 QHSPQDLSN-----EETTEANHFEDSSKESKE------SSDQHLDNPAETQTN 322 + N TT+ +SS + K S H PA T +N Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 34.7 bits (79), Expect = 0.005 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 2/158 (1%) Query: 665 KNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKL 724 + ++ E + + P + E+ + + Q EK E + T + Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 725 LEEEAKESVKAYLDC--VSQAKNEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRAR 782 + +EAK +VKA V+Q+ +E ++ + + +K E+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 783 NEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTDEERK 820 KQE + + P+A+ E +K ++ Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Score = 32.7 bits (74), Expect = 0.017 Identities = 32/278 (11%), Positives = 69/278 (24%), Gaps = 14/278 (5%) Query: 1102 RARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL 1161 + + + TP + + S AR +E TP Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEI-----ARVDEAPVPPPAPATPSETTE 1038 Query: 1162 LEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKLLEQQALDCLKNAKTEADKKRC 1221 E K ++ + E Q E ++ Q + ++ + + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 1222 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYK 1281 ++K+ AK + + K+E + + P+A+ E Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 1282 DCLSQARNEEE---RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKL 1338 + + E + + P V+ + E Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 1339 LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKC 1376 R+ + + A NDR+ + C Sbjct: 1219 PKNRHRRSVRSVPHNVEPA------TTSSNDRSTVALC 1250 Score = 31.6 bits (71), Expect = 0.041 Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 11/214 (5%) Query: 956 RARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL 1015 + + + TP + + S AR +E TP Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEI-----ARVDEAPVPPPAPATPSETTE 1038 Query: 1016 LEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLEQQALDCLKNAKTEADKKRC 1075 E K ++ + E Q E ++ Q + ++ + + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 1076 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYK 1135 ++K+ AK + + K+E + + P+A+ E Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN---- 1154 Query: 1136 DCLSQARNEEERRACEKLLTPEARKLLEQEVKKS 1169 + + +++ A + E +EQ V +S Sbjct: 1155 --IKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Score = 31.6 bits (71), Expect = 0.044 Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 22/174 (12%) Query: 811 KNAKTDEERKKCLKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 869 + ++ E + + P ++ + + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 870 LLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEQQALDCLKNAKTEADKKRC 929 + +EAK +VKA A++ E KE + T E + +++ AK E +K + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQE 1121 Query: 930 VKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKE 983 V KV ++ S K + ++E + + E + ++E + Sbjct: 1122 V--------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQS 1160
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 871 bits (2252), Expect = 0.0 Identities = 513/522 (98%), Positives = 517/522 (99%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 MGQAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQ+ELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 4e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMVLNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + L A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.007 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTLHQRHDDKEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNEINANPLNDNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF07132#Harpin protein (HrpN) Length = 356 Score = 33.9 bits (77), Expect = 8e-05 Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 42 IGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIG 86 +G +G G+GG +GG+ +LGG G + G G+GGG+G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 30.8 bits (69), Expect = 8e-04 Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 38 LGRDIGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIGD 87 +G +G G+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (707), Expect = 3e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLIYPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 25.1 bits (54), Expect = 0.030 Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 33 LDENKSDLAEMNEINEQLPQAQKNSKNSQTKKPLCSRLNLENL 75 L+E K L + E EQ +AQK+ + + ++ +R NLENL Sbjct: 141 LEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL 183
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (505), Expect = 1e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPNNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.006 Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 46 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 93 +FQ+ E+R + IER K ER++ L + +++ L + K E QK Sbjct: 149 AFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.6 bits (71), Expect = 0.018 Identities = 54/310 (17%), Positives = 111/310 (35%), Gaps = 36/310 (11%) Query: 44 AKFSNNTLKIIEELNNGVKSASEEIKAKAHDFSNEKLTNEQIKDLLNNAEIPTSGRDAII 103 AK+S LK + A+ E +AKA +N +++KD++N A + R Sbjct: 55 AKWSTAQLKKTQAEQAARAKAAAEAQAKAK--ANRDALTQRLKDIVNEALRHNASR---- 108 Query: 104 FGVNNLNPEIVEFMHQNNKKMIIE-------KASNKELELLKDAN--FRHPENIRASLDH 154 P E H NN M E KA K + + A F+ E R ++ Sbjct: 109 ------TPSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIER 162 Query: 155 DAISHILKRHGVNSVNVRNGEIPITNEDIANYRYIVNNADAILRTLDKYDKEAITAFKQ- 213 + + + R + + + + ++ A + + +D K + Sbjct: 163 EKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSS 222 Query: 214 INGYAVVVEQAINKKNELALKTMFKSKGDYKNNEVYKEFSSTSLDADAKVRHRLSSYSGA 273 I+ ++ K+NELA + K E+ + S A+ +++R Sbjct: 223 IHARDAEMKTLAGKRNELAQASA-------KYKELDELVKKLSPRANDPLQNRPFF---- 271 Query: 274 TENSTQKPLTDQEDLLKTQENLNASTQEPNHLSPLEQANAEKLAKLESEKLESEQEFLKA 333 +T++ + + + Q+ + AS N ++ + +K S + + Sbjct: 272 --EATRRRVGAGKIREEKQKQVTASETRINRINA-DITQIQKAISQVSNNRNAGIARVHE 328 Query: 334 KEQENKRKEA 343 E+ K+ + Sbjct: 329 AEENLKKAQN 338
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1457), Expect = 0.0 Identities = 131/610 (21%), Positives = 232/610 (38%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ ++ A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTNSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVINITDK-LNQGKVGALLDVY 304 + +G++++ GS L S V + I I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHYIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMLNLIKFQSGYAANAKVISTID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ T + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (369), Expect = 3e-45 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 24/169 (14%) Query: 22 NMDKETVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 D ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCAQKT---------KECYKENRRVDVKL 177 + KG+ D I GE+ P +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 29.1 bits (65), Expect = 0.018 Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILSKEVLEIAP 102 EP +++L ++KP F+V A + + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 3e-06 Identities = 22/170 (12%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 51 RAQYQSHFKALEQKEEALKEREREQKAQFDDAVKQASALALQDERAKIIEEARKNAFLEQ 110 + Q+ + QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQQLHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170 LE + + E +L ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 425 bits (1094), Expect = e-146 Identities = 133/399 (33%), Positives = 223/399 (55%), Gaps = 32/399 (8%) Query: 175 DLNTLTIIKTLTFYDDLHYDLKIAFKSPN--------NIIPSYVITNGYRPVADLDS--- 223 D T KT Y + + + N + + P D S Sbjct: 155 DAAGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 224 --YTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDSQGFE 278 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTN 272 Query: 279 ALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEY 327 + +G N + I K++ N ++GP+ + A++P L ++Y Sbjct: 273 NFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDY 330 Query: 328 GLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELAPKM 387 G + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK+ Sbjct: 331 GWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKI 390 Query: 388 KELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSE 447 + ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + Sbjct: 391 QAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP 450 Query: 448 WILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFP 507 + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP Sbjct: 451 FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFP 510 Query: 508 AGLVLYWTTNNILSVLQQLIINKILENKKRMHAQNKKES 546 +GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+S Sbjct: 511 SGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.6 bits (58), Expect = 0.019 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 54 AGVKESVKEVKEEGVKETSTKEIHQNAEEKKQLETETPQEE 94 A KE + KET+T E EEK ++ETE QE Sbjct: 1086 AQSGSETKETQTTETKETATVE----KEEKAKVETEKTQEV 1122
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.013 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 KGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIETLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RTKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (564), Expect = 3e-77 Identities = 63/147 (42%), Positives = 95/147 (64%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKNFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 134 bits (339), Expect = 5e-41 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.012 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 8/70 (11%) Query: 192 KEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPKEIF 249 K +EE+ II D A+ + Q + ALK + R + K+SK +MP EIF Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIF 420 Query: 250 NDKQFTYFKF 259 +D FTYF F Sbjct: 421 DDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.8 bits (119), Expect = 4e-09 Identities = 50/346 (14%), Positives = 105/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELC-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNIQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHAAKLKNEKEFVMWGDGTARREYLNAKDLARFIA 222 +YG + + P + + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 152 bits (385), Expect = 3e-43 Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 86/384 (22%) Query: 5 IGIDLGTTNSAMAVYEG----NEAKIIA-NKEGKNTTPSIVAFTDKGEILVGESAKRQAV 59 + IDLGT N+ + V NE ++A ++ + S+ A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQMLG 64 Query: 60 TNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKIYTPQEISAKIL 119 P I +I+ + ++G A + +++ + Sbjct: 65 RTPGN-IAAIRPM-----------------------KDGVIA-----DFFVTEKMLQHFI 95 Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179 ++ ++ ++ VP +R+A +E+ AG + +I EP +AA+ G Sbjct: 96 KQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFK 239 L E+ MV D+GGGT +V V+ V +GGD FD +I+++ + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 240 SETGIEIKNDVMALQRLKEAAENAKKELSSAM----ETEINLPFITADATGPKHLVKKLT 295 S G + AE K E+ SA EI + P+ + Sbjct: 208 SLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-S 253 Query: 296 RAKFESLTEDL----------VEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQE 345 E+L E L +E+ ++ S I + G +V+ GG + + Sbjct: 254 NEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDR 305 Query: 346 RVKAFIHKELNKSVNPDEVVAVGA 369 + + + +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGG 329
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 363 bits (934), Expect = e-127 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSANIINGATIERGVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IER + +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKI----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKDP--------LNDFKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.004 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.2 bits (122), Expect = 7e-09 Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 9/230 (3%) Query: 285 KRDKTLSKKKSEKTPTKAQTTAPSATPENAPKIPLKTPPLMPLIGANPPNDNSPTPLEKE 344 KR++T+ TP Q PS N + P+ P A TP E Sbjct: 987 KRNQTVDTTNIT-TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA--------TPSETT 1037 Query: 345 ETTKEASDNKEKTKETNNSAQNAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYKP 404 ET E S + KT E N AQ + E KS T + Q E +E + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 405 PMSRISMDLFPKELGKVEVVIQKVGKNLKVSVISHHNSLQTFLDNQQDLKNSLNALGFEG 464 ++ + + +E KVE + + V +T + + + + + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 465 VDLSFSQDSSKEQPKEQLRELFKEQESSPLKENALKSYQENTDNENKETS 514 + + EQP ++ ++ + N S EN +N T+ Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 35.0 bits (80), Expect = 0.001 Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 22/273 (8%) Query: 6 NPIHTNASANANALNSGAKNEDTKNTPKSASKDFSKILNQKISKDKTAPKENPSALKATP 65 NP + + N N + P S N++I++ AP P+ ATP Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSN------NEEIARVDEAPVPPPA--PATP 1033 Query: 66 KNAKEGAKEDAKALEKTPTLQPQHAQNPAKDQQAPTLKDWLNHPKTHPTA-LHKTQHENH 124 E E++K KT Q A + + N T + ++ E Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 125 ETNPKNPNETLNKNEKKPNGVTSN------SHQANLPNKNPLTPTNHANNAIKTPTTPTH 178 ET ET +++ V + + + K + T PT Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 179 NAKESKTLKDIQ-TLSQKHDLNASNI------QATTTPENKTPLNASDQLALKTTQTPIN 231 N KE ++ + Q +SN+ T N N + T T + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 232 NTLAKNDARNTANLSSVLQSLEKKESHNKERTT 264 + K R+ ++ SV ++E + + +R+T Sbjct: 1214 ESSNKPKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Score = 29.6 bits (66), Expect = 0.036 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 23/225 (10%) Query: 198 LNASNIQATTTPENKTPLNASDQLALKTTQTPINNTLAKNDARNTANLSSVLQSLEKKES 257 N + P N + D+ + P T ++ N +++EK E Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPV---PPPAPATPSETTETVAENSKQESKTVEKNEQ 1056 Query: 258 HNKERTTPPNNEKKTPPLKEALPMNAIKRDKTLSKKKSEKTPTKAQTTAPSATPE----- 312 E T N + K + N + S ++++T T + E Sbjct: 1057 DATETT--AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 313 ------NAPKIPLKTPP-------LMPLIGANPPNDNSPTPLEKEETTKEASDNKEKTKE 359 PK+ + P + P ND + E + T +D ++ KE Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 360 TNNSAQNAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYKP 404 T+++ + + T + P+ T TQ KP Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 93.7 bits (233), Expect = 3e-26 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 1 MEILVLNLGSSSIKFKLFGMKENKPLASGLAEKIGEEIGQLKIRSHLHHNEQELKEKLVI 60 M+ILV+N GSSS+K++L K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGG 97 KDH + ++ + L G+IKD ++IDA+GHRVV GG Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGG 95
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 274 bits (703), Expect = 2e-94 Identities = 103/185 (55%), Positives = 132/185 (71%) Query: 5 GGDKFHAPVLINEKVMQEIGKLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHAT 64 GG+ F + VLI + V++ I LAPLHNPAN+ GI+ + P +P +AVFDTAFH T Sbjct: 94 GGEYFTSSVLITDDVLKAITDCIELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQT 153 Query: 65 MPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNTAYEEFNAISLHLGNGSS 124 MP YAY+Y +PYE Y KY+IR+YGFHGTSH YV++ AA+ LN E I+ HLGNGSS Sbjct: 154 MPDYAYLYPIPYEYYTKYKIRKYGFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSS 213 Query: 125 AVAIQKGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYTAQCANKSLEEVMKMLNHESGL 184 A++ GKS+DTSMG TPLEGL MGTR G IDP+++ Y + N S EEV+ +LN +SG+ Sbjct: 214 IAAVKNGKSIDTSMGFTPLEGLAMGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGV 273 Query: 185 KGICG 189 GI G Sbjct: 274 YGISG 278
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 92.9 bits (231), Expect = 4e-26 Identities = 36/77 (46%), Positives = 49/77 (63%) Query: 7 IEARKEKGDKKAKLAFEMCAYRIKKYIGAYIAVLKKVDAILFTGGLGENYSALRESVCEG 66 +A + GDK+A+LA + AYR+KK IG+Y A + VD I+FT G+GEN +RE + +G Sbjct: 287 EDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDG 346 Query: 67 LENLGIALCKPTNDNPG 83 LE LG L K N G Sbjct: 347 LEFLGFKLDKEKNKVRG 363
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.030 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 67 IYTTNYNELLIIDG-QQRLTTITLLFIALMNYLNDEDELLEKFSRQKIQNRYLINSDEKG 125 I + E+ I G Q+RL L + + +L+ E EL E+ R++I + + K Sbjct: 692 IPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKE 751 Query: 126 DKKFRLILSEPDRDTLLSLIDK 147 + ++ ++ +L +D Sbjct: 752 EVVGAEMMRHFEKGVMLQTLDS 773
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.042 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMELPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.7 bits (74), Expect = 0.002 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLNLCQKPHILALSKIDMA 127 L E+ LNQ + + + A +AEL A+V + + + FLN + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.004 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 146 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.8 bits (121), Expect = 2e-09 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 91 PQKPPTPPTPPTPPTPP-KPIEKPKPEPKPKPKPKPEPKKPDHKHKALKKVE 141 P P P P P P P+ KP+PKPKPKPKP K + + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 43.8 bits (103), Expect = 3e-07 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 59/234 (25%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPDHKHKALKKVEKV 143 P + P +P P P P P P E P KPKPKPKP+PK V+KV Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK----------PVKKV 106 Query: 144 EEKKIVEEKKEEKKIVEQKVEQKVEHKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNK 203 +E+ K++ K + + ++ + + + Sbjct: 107 QEQP----KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 162 Query: 204 GLDNQTRRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNA 263 YP A L +G Sbjct: 163 ---------------------------------------------YPARAQALRIEGQVK 177 Query: 264 VEFYLHPNGDITDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 317 V+F + P+G + +++I+ M + ++ + +P + ++ I + Sbjct: 178 VKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 43.4 bits (102), Expect = 4e-07 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPDHKHKALKKVEK 142 A Q PP P P P P P PK P KPKP+PK K +++ K Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 143 VEEKKIVE 150 + K + Sbjct: 112 RDVKPVES 119 Score = 40.7 bits (95), Expect = 3e-06 Identities = 18/54 (33%), Positives = 25/54 (46%) Query: 76 PSKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKK 129 P + Q P+P + +P P PP KPKP+PKPKP K + + Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Score = 37.3 bits (86), Expect = 4e-05 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKP--KPKPEPKKPD 131 Q + +P P P P PKP KPKP+P K +PK + K + Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 36.5 bits (84), Expect = 8e-05 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 95 PTPPTPPTPPTPP-KPIEKPKPEPKPKPKPKPEPKKPDHKHKALKKVEKVEEKKIVEEKK 153 P PP PP +P+ +P+PEP+P P+P E K K K + KK+ E+ K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 154 EEKKIVE 160 + K VE Sbjct: 112 RDVKPVE 118 Score = 35.0 bits (80), Expect = 2e-04 Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEPKKPD 131 +P + P+P P++ P P P PKP K + +PK KP +P Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 122 Score = 31.1 bits (70), Expect = 0.005 Identities = 13/53 (24%), Positives = 17/53 (32%) Query: 75 DPSKNTQGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKPEP 127 +P P + P P P P K E+PK + KP P Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.029 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 22 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVSDLAL-----ASLEEVK 76 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 77 EIIQSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 128 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.0 bits (70), Expect = 0.005 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 897 bits (2320), Expect = 0.0 Identities = 285/1038 (27%), Positives = 517/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTGYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEGELGQFELMSALRKELKS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLDTINLSEVTLLGGGGDSSPFQTFVFSHSQEAVDKSVANLRKFLLESPELKGKI 691 + + + N+ + L G ++ F + + D + L + + + Sbjct: 657 IRDGFVI-PFNMPAIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLVALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 277 bits (709), Expect = 2e-77 Identities = 104/397 (26%), Positives = 182/397 (45%), Gaps = 14/397 (3%) Query: 2803 AGNNSLMWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMKDITSALGMLSKPNLKNNSTD 2862 +G L L + + +A + T I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2863 VLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQKFADAIPNAMDVILKYSQRDKL 2922 L L+ RL LS + F++RL +LK+Q+FA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2923 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITS 2977 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2978 SKSDNVDVGLYARTFIKKSELTFSVNETWGANKTQISSADTLLSMINQSYKYNTWTTNAR 3037 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ R Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3038 VNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMHNALYNQFKANADPSKKSVLTIDF 3097 +YGYDF F +++LKP +G+ Y ++G T + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3098 AFENRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYREGELYNTFASITTGG 3157 E R+Y+ SYFY G+ ++ + V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3158 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3194 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 35.8 bits (82), Expect = 0.004 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 5/100 (5%) Query: 702 SYTFDGANNAFNENKFNGGSFSFNHAEQTNTFNNNSFNGGSFSFNAKRVDFNHNSFNGGV 761 SY+ + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 762 FNF---NNTPKVSFTDDTFNVNNQFKING-AQTTFTFNKG 797 + + + + + + N Q N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 5e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERRSSFNVSLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 35 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 94 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 95 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 148 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 149 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 208 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 209 EETMDSQTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 261 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 262 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 311 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 312 AIAGLIVTPVVFYGI 326 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (288), Expect = 7e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 3 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 161 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 81.8 bits (202), Expect = 2e-18 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 161 SAKAKLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 220 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 221 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 277 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 278 KNPTFKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 337 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 338 FRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVY 372 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.014 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 554 bits (1429), Expect = 0.0 Identities = 177/583 (30%), Positives = 294/583 (50%), Gaps = 66/583 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSRDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEQEKYEKSQN---------------------- 341 GA GGVPG +SN P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGANALEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ + L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPITPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDN 564 + E++ ++IR E D + L+I+ +S+D+ Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSNDH 558
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 30.4 bits (68), Expect = 0.003 Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 46 TNEGLSQTDAKSHEINLEESPNNPNTPNDEKAPHNEENRNNALSQNLD 93 N+ N ++PNNP+ PN+ P+N +N +N + N D Sbjct: 284 ANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 331 Score = 26.9 bits (59), Expect = 0.049 Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 65 SPNNPNTPNDEKAPHNEENRNNALSQNLDA 94 +P+ PN P++ P N +N +N S N DA Sbjct: 306 NPDEPNNPDNPNNPDNPDNGDNNNSDNPDA 335
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 31.7 bits (72), Expect = 0.002 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%) Query: 136 GVMPEETLETYSQISETCKRLKLKGLMCIGAHADDEKKIEKSF 178 G P+ L + Q+ + LM A A+ I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 3e-12 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 181 GEVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDDLRKHLKFIIS 240 +L DD R L LS+ G+ + + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 299 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 300 TEEISKILD 308 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 1e-09 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 683 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 742 +L DD + R ++ + L G + +N + GD D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 743 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMCGVESGMTEYITKPYSGEYLTTVVKRSIKL 802 ++K +LP++ ++++ T + E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 803 E 803 Sbjct: 122 P 122
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.010 Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDAEIKNAL 214 + + D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 294 bits (753), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.015 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 38.4 bits (89), Expect = 3e-05 Identities = 29/184 (15%), Positives = 79/184 (42%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAKAL 160 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQKTLDFIAERLKGVKKKKGVELFHKAN----KISGHQAISSDILEKGGI 216 + A LA+ + + + R + + + L + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFSTIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 35.3 bits (81), Expect = 2e-04 Identities = 31/184 (16%), Positives = 76/184 (41%), Gaps = 12/184 (6%) Query: 104 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 158 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 159 EIDASKKLAKMQETLDFIKERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 214 + A LA+ ++ + +K R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 215 DN-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFSTIKAIKNKQV 272 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 273 YKLP 276 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.028 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217