>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.034 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.1 bits (114), Expect = 2e-08 Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 3/263 (1%) Query: 53 LRQKNDKLFTTKEKLTKANTDLENKNDKLSKENENLAVKISGLENSNDQLCQAKEKLTKE 112 ++++ DK L N+DL N L N+ L ++S + + ++ + + Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 113 KAELLRDKDNLTKANTELTTKNTELQKQVNRLKNSRQVLENEKAELSKDKENLTKANAEL 172 EL K +L KA +T ++ L+ + L KA+L K E + Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 173 KTENDKLNHQVIVLTKEQDSLKQERAQLQDAHGFLEKLCADLEKENQHLTDKLKKLESAQ 232 + L + L Q L++ + LE E L + LE A Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 233 KNLENSNDQLLQAKENIAEEKTELEREMVRLKSLEATDKSDLDLQNWRFKSA---IEDLK 289 + N + + + EK LE L+ + + + K+ L+ Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 290 RQNRKLEEENIVLKERVDGLNEQ 312 + LE ++ VL L Sbjct: 295 AEKADLEHQSQVLNANRQSLRRD 317 Score = 46.6 bits (110), Expect = 7e-08 Identities = 46/249 (18%), Positives = 84/249 (33%) Query: 16 KELEVRIGELENENAELLREKECLAAETSELKDANNQLRQKNDKLFTTKEKLTKANTDLE 75 EL + + + + + A++ EL+ L + + + LE Sbjct: 88 DELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLE 147 Query: 76 NKNDKLSKENENLAVKISGLENSNDQLCQAKEKLTKEKAELLRDKDNLTKANTELTTKNT 135 + L+ +L + G N + + L EKA L + L KA +T Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 136 ELQKQVNRLKNSRQVLENEKAELSKDKENLTKANAELKTENDKLNHQVIVLTKEQDSLKQ 195 ++ L+ + L KA+L K E + + L + L Q L++ Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 196 ERAQLQDAHGFLEKLCADLEKENQHLTDKLKKLESAQKNLENSNDQLLQAKENIAEEKTE 255 + LE E L + LE + L + L + + E K + Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 256 LEREMVRLK 264 LE E +L+ Sbjct: 328 LEAEHQKLE 336 Score = 45.1 bits (106), Expect = 2e-07 Identities = 55/297 (18%), Positives = 105/297 (35%), Gaps = 10/297 (3%) Query: 25 LENENAELLREKECLAAETSELKDANNQLRQKNDKLFTTKEKLTKANTDLENKNDKLSKE 84 ++ + E L + S+L N L+ ND+L + + + + + Sbjct: 55 VQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASK 114 Query: 85 NENLAVKISGLENSNDQLCQ-------AKEKLTKEKAELLRDKDNLTKANTELTTKNTEL 137 + L + + LE + + + L EKA L K +L KA +T Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 138 QKQVNRLKNSRQVLENEKAELSKDKENLTKANAELKTENDKLNHQVIVLTKEQDSLKQER 197 ++ L+ + LE +AEL K E + + L + L + L++ Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 198 AQLQDAHGFLEKLCADLEKENQHLTDKLKKLESAQKNLENSNDQLLQAKENIAEEKTELE 257 + LE E L + +LE A + N + + + EK LE Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 258 REMVRLKSLEATDKSDLDLQNWRF---KSAIEDLKRQNRKLEEENIVLKERVDGLNE 311 E L+ ++ + A + L+ +++KLEE+N + + L Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Score = 41.2 bits (96), Expect = 3e-06 Identities = 45/226 (19%), Positives = 78/226 (34%) Query: 15 RKELEVRIGELENENAELLREKECLAAETSELKDANNQLRQKNDKLFTTKEKLTKANTDL 74 +ELE R +LE + +A+ L+ L + L E +T Sbjct: 115 IQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 174 Query: 75 ENKNDKLSKENENLAVKISGLENSNDQLCQAKEKLTKEKAELLRDKDNLTKANTELTTKN 134 K L E L + + LE + + + + L +K L +L Sbjct: 175 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 234 Query: 135 TELQKQVNRLKNSRQVLENEKAELSKDKENLTKANAELKTENDKLNHQVIVLTKEQDSLK 194 + LE EKA L + L KA + + ++ L E+ +L+ Sbjct: 235 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALE 294 Query: 195 QERAQLQDAHGFLEKLCADLEKENQHLTDKLKKLESAQKNLENSND 240 E+A L+ L L ++ + K+LE+ + LE N Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 35.4 bits (81), Expect = 2e-04 Identities = 55/285 (19%), Positives = 103/285 (36%) Query: 14 VRKELEVRIGELENENAELLREKECLAAETSELKDANNQLRQKNDKLFTTKEKLTKANTD 73 +I LE E A L + L + + K L K L D Sbjct: 170 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 229 Query: 74 LENKNDKLSKENENLAVKISGLENSNDQLCQAKEKLTKEKAELLRDKDNLTKANTELTTK 133 LE + + + KI LE L + +L K + + L + Sbjct: 230 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 289 Query: 134 NTELQKQVNRLKNSRQVLENEKAELSKDKENLTKANAELKTENDKLNHQVIVLTKEQDSL 193 L+ + L++ QVL + L +D + +A +L+ E+ KL Q + + SL Sbjct: 290 KAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSL 349 Query: 194 KQERAQLQDAHGFLEKLCADLEKENQHLTDKLKKLESAQKNLENSNDQLLQAKENIAEEK 253 +++ ++A LE LE++N+ + L + Q+ +A E + Sbjct: 350 RRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Query: 254 TELEREMVRLKSLEATDKSDLDLQNWRFKSAIEDLKRQNRKLEEE 298 LE+ L+ + + + + ++ + LK + K EE Sbjct: 410 AALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEE 454 Score = 29.3 bits (65), Expect = 0.020 Identities = 25/201 (12%), Positives = 63/201 (31%) Query: 104 QAKEKLTKEKAELLRDKDNLTKANTELTTKNTELQKQVNRLKNSRQVLENEKAELSKDKE 163 E + + + + +N L+ + + L + + L++ EL+++ Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 164 NLTKANAELKTENDKLNHQVIVLTKEQDSLKQERAQLQDAHGFLEKLCADLEKENQHLTD 223 N + + + ++ L + L++ + LE E L Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 224 KLKKLESAQKNLENSNDQLLQAKENIAEEKTELEREMVRLKSLEATDKSDLDLQNWRFKS 283 + LE A + N + + + EK LE L+ + + + K+ Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 284 AIEDLKRQNRKLEEENIVLKE 304 + + + L+ Sbjct: 216 LEAEKAALAARKADLEKALEG 236
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.3 bits (73), Expect = 0.004 Identities = 17/168 (10%), Positives = 49/168 (29%), Gaps = 1/168 (0%) Query: 45 AEKDKDSKLTSDSPTQQQAQTQAQNTASSGTPTPPTKEEPKHTASSGTPSTSGSSVASQL 104 ++ + T N S T ++G + +++ S Sbjct: 272 GKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSK 331 Query: 105 TKDTTMVNNLKSVSVSGMNTTLSGVETMSKQTATISNLLSGNPNLGSVIPNAQGLSSAFS 164 T++VN + N + + + + ++ N + ++ A Sbjct: 332 NVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGK 391 Query: 165 ALESAQNTLKGYLNSSSATIGQLTNGSNAVVGALDKAINQVDMALADL 212 + + + + + ++D A+++VD + L Sbjct: 392 TMFIDKTASGVSTLINEDAAAAKK-STANPLASIDSALSKVDAVRSSL 438
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 227 bits (581), Expect = 8e-80 Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDVIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKA---TEVPAS 120 +RNH N ++D SPMGC+TGFY++++ + +V + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAKNLARAFLD 145 NE QCG AA H+L+ AK +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.019 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 146 FDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLDAIQRG 205 F +L ++K+ +++ ++ VEE YL + ++ +L + Sbjct: 60 FSERKELSLDKRKL------SDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNS 113 Query: 206 EVLEIVALIAYLNSLGN 222 + + L AYL Sbjct: 114 PNISLSQLKAYLEGKSE 130
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.006 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 29 LAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIY-ALNSKKLLELRRLK 80 + + G G GKSTL++ L + + + +D Y + EL + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT 651
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 34.7 bits (79), Expect = 3e-04 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%) Query: 125 SKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKGNLEEMSDEV----KN 180 +KME AN+ +K F+ + A++ R QNLKG E+SD++ KN Sbjct: 640 NKMEAKAQANS---QKDEIFALINKEANRDAR---AIAYAQNLKGIKRELSDKLENVNKN 693 Query: 181 KESFNKNKESFNKNK-QSFDKAMDKGVESLKEKAKDLPKN 219 + F+K+ + F K + F KA ++ +++LK KDL N Sbjct: 694 LKDFDKSFDEFKNGKNKDFSKA-EETLKALKGSVKDLGIN 732
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 4e-04 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 8/150 (5%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPI 109 P ET ++ T ++ + D E+ + ++ V N Q N+ Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTNQTQTEMKTTEEKQEAQKELKA-VESIPMSAQKESQAVAKKETPHKKPKVAPKDKEAH 168 +T +TQT E +++ K E + SQ K+E + V P+ + A Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE---QSETVQPQAEPAR 1147 Query: 169 KDKAKHAAKEPKAK--KEAHKEVPKKANSK 196 ++ KEP+++ A E P K S Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Score = 32.7 bits (74), Expect = 0.002 Identities = 17/117 (14%), Positives = 42/117 (35%) Query: 85 KQEDKLDKVADNVKKQENDAFNMPIQTNQTQTEMKTTEEKQEAQKELKAVESIPMSAQKE 144 ++D + A N + + N+ T + +E K+ E K ++ + + Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK 1113 Query: 145 SQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKAKKEAHKEVPKKANSKTTLTK 201 + +E P +V+PK +++ + + KE + N+ + Sbjct: 1114 VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 24.9 bits (54), Expect = 0.017 Identities = 11/51 (21%), Positives = 25/51 (49%) Query: 2 KTTIKEIFQEEGYSIPNYQRDYAWKEKNFKDLWEDLEEAIEYNKKGQGAFY 52 T + F++E I N++ + + + + L++A+EY ++ A Y Sbjct: 908 GITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASY 958
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 59.7 bits (144), Expect = 1e-12 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYDNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 53/271 (19%), Positives = 101/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFD 87 L+ S +T H L + LM + L LS + +S A+ + + Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++A G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLVGLK-----TRSLRKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLVSCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ V + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 73.6 bits (180), Expect = 7e-16 Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 7/232 (3%) Query: 158 EEQLLPTLNAQEEKEEVKETPQEEKQEIKETPQKEKQEVKETPQKEKQEVKETPQEEKPK 217 +E +P E + + KQE K T +K +Q+ ET + ++ KE K Sbjct: 1021 DEAPVPPPAPATPSETTETVAENSKQESK-TVEKNEQDATETTAQNREVAKEAKSNVK-- 1077 Query: 218 DDETQESETPKDEEVSKELETQEKLEIPKEETQEEVKEEIKEEAQEEVKEETQEIKEEKQ 277 TQ +E + +KE +T E E E +E+ K E ++ + K+E+ Sbjct: 1078 -ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 278 EETQDSPSVQELEAMQELVKEIQENSNGQEDKEETQENAEIPQDKEIQEVVTEKTQVQEL 337 E Q +KE Q +N D E+ + ++ + E T T + Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Query: 338 EIPKEKTQESAEALQETQAQELEKQENAETPQEKEKQEDTETPQDVETPQEE 389 E P+ T + Q T E + + P + Sbjct: 1197 ENPENTTPATT---QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Score = 72.8 bits (178), Expect = 2e-15 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 11/262 (4%) Query: 140 ELENLGDLEALAKEEPNNEEQLLPTLNAQEEKEEVKETPQEEKQEIKETPQKEKQEVKET 199 E+E N Q +E + TP + + V E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 200 PQKEKQEVKETPQEEKPKDDETQESETPKDEEVSKELETQE----KLEIPKEETQE-EVK 254 ++E + V++ E+ + Q E K+ + + + TQ + +ETQ E K Sbjct: 1044 SKQESKTVEK--NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 255 EEIKEEAQEEVKEETQEIKEEKQEETQDSPSVQELEAMQELVKEIQENS---NGQEDKEE 311 E E +E+ K ET++ +E + +Q SP ++ E +Q + +EN N +E + + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 312 TQENAEIPQ-DKEIQEVVTEKTQVQELEIPKEKTQESAEALQETQAQELEKQENAETPQE 370 T A+ Q KE V + E+ E Q E++ P+ Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 371 KEKQEDTETPQDVETPQEEKTQ 392 + ++ P +VE Sbjct: 1222 RHRRSVRSVPHNVEPATTSSND 1243 Score = 67.4 bits (164), Expect = 8e-14 Identities = 51/277 (18%), Positives = 87/277 (31%), Gaps = 24/277 (8%) Query: 163 PTLNAQEEKEEVKETPQEEKQEIKETPQKEKQEVKETPQKEKQEVKETPQEEKPKDDETQ 222 T N + + EE + E P + E + + QE K + Q Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA-ENSKQESKTVEKNEQ 1056 Query: 223 ESETPKDEEVSKELETQEKLEIPKEETQEEV---KEEIKEEAQEEVKEETQEIKEEKQ-- 277 ++ ++E+ + K + EV E KE E KE KEEK Sbjct: 1057 DATETT--AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 278 --EETQDSPSVQELEAMQELVKEIQENSNGQEDKEETQENAEIPQDKEIQEVVTEKTQVQ 335 E+TQ+ P V + ++ E + + + N + PQ + TE+ Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ---- 1170 Query: 336 ELEIPKEKTQESAEALQETQAQELEKQENAETPQEKEKQEDTETPQDVETPQEEKTQEDH 395 P ++T + E E P + T P K + H Sbjct: 1171 ----PAKETSSNVEQPVTESTTVNTGNSVVENP--ENTTPATTQPTVNSESS-NKPKNRH 1223 Query: 396 YESIEDIP---EPVMAKAMGEELPFLNEAVAETPNSE 429 S+ +P EP + L + + N+ Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAV 1260 Score = 52.0 bits (124), Expect = 5e-09 Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 25/262 (9%) Query: 239 QEKLEIPKEETQEEVKEEIKEE-------------AQEEVKEETQEIKEEKQEET--QDS 283 EK + T I+ + E + ET ++S Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 284 PSVQELEAMQELVKEIQENSNGQEDKEETQENAEIPQDKEIQEVVTEKTQVQELEIPKEK 343 + E N + KE Q E+ + +E + Q E + Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 344 TQESAEALQETQAQELEKQENAE-TPQEKEKQEDTETPQDVETPQEEKTQEDHYESIEDI 402 T E E + + + + QE + T Q KQE +ET Q P + D +I++ Sbjct: 1105 TVEKEE---KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA---RENDPTVNIKEP 1158 Query: 403 PEPVMAKAMGEELPFLNEAVAETPNSENDTETPKESDIKTPQEKEESDKTSSPLELRLNL 462 A E+ + E P +E+ T S ++ P+ + + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVNSES 1215 Query: 463 QDLLKSLNQESLKSLLENKTLS 484 + K+ ++ S++S+ N + Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPA 1237
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKRQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 R + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 37.3 bits (86), Expect = 1e-04 Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 11/133 (8%) Query: 146 TNDPMYANTPFNNNPNSPNDNAINGKDGAN-----GSNGYGINGNDGINGSSGSNGNNSN 200 N + P + AI GAN G + YG N N + + ++ + + Sbjct: 232 NETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKAL 291 Query: 201 NNAV--GSGIDTDGVLGVDG---VNGSNSSSGGSIGGYENNFTNHGSTNNN-TGGYDNFN 254 +V G DT G +N + S G N HG T N GG N Sbjct: 292 IFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDI 351 Query: 255 NNSSSGGSLGNGG 267 +S ++ GG Sbjct: 352 LVGNSADNILQGG 364
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 34.5 bits (79), Expect = 0.008 Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 27/235 (11%) Query: 1238 EQDYEIIKDFMDKVGENNIHLNEQTLNEYFIH-HPENILGHLSLEKTRY---SSEVNGEQ 1293 ++ E+ KD ++ N N T N F+ + N++ +K +Y S + Sbjct: 229 KEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFY 288 Query: 1294 IYKYELQALEDKSLDLSQALNQAIEKLPKGVYQYHKTTLKTDTLIIDTNNERYQEVQKLI 1353 K + L+ KS DL + + I + K + T K + + + ++ +L+ Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELL 342 Query: 1354 K----NLERG-ELVKWDDLYFQLEQNNERGIFLRPTKINSKAQDSRLKAYFKIKDALNDL 1408 L++G ++ + Y E + I L K S+ S K Y K+K + Sbjct: 343 TANIYALKKGLSHIELANYY--SENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAA 400 Query: 1409 ------TSAELNPLSS---DLELENKRAKLNLVYDEFVKKFGYLNENKNRKDIKQ 1454 ELN L S ++ + ++ + E ++ GY+ K K K Sbjct: 401 NEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 94.5 bits (235), Expect = 1e-24 Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 13/213 (6%) Query: 144 FEEVRD-ASVIYHLEKKLGDYIFYVACFFFGTTALLIILLIVLLPLKQKVPYLVQFSNNK 202 FEE ++ + VA ++ + L PLK PY++ N Sbjct: 14 FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73 Query: 203 ENFALVQ--KADSTITANKALIRSLVGAYVLNRESITHIEQHEKMRQNTIKEQSSNEVWY 260 ++ D+TIT ++A+ + + YV RE + + + + S+ Sbjct: 74 GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAR--EEYFDAVMVMSARPEQD 131 Query: 261 EFEKLIA-----HYDSIYTNPLLTRKVKIANI-YLDKDLAYIDIEVSLYHSGELESLKRY 314 + + +I N V+I + +L ++A + +G + Sbjct: 132 RWSRFYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFTKESV-TGSNSTKTDA 189 Query: 315 KVVMSFEFKKQEINFDSMSLNPTGFIVTGYDVT 347 + ++ NP G+ V Y Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 199 bits (508), Expect = 4e-58 Identities = 116/461 (25%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLEKERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LE++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPNNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVVDTPQDFSGAI 413 + E I P VI E K E H+ V P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.0 bits (96), Expect = 1e-05 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVVDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ + PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.004 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 18 NAFVNFFKNSLADKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLI 77 A N L + Y L+ L + S + G + I IN ++ Sbjct: 70 QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVV-QYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.023 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 27.3 bits (60), Expect = 0.039 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 128 NKSVYQLVEMAIGAYNGG-MKHDPNGAYVKKFRCIYSQVRYNE 169 N+S Y VE Y G + GAYV ++ ++ ++ Y++ Sbjct: 451 NRSEY--VETTSTEYTSGKINLSHQGAYVAQYEILWDEINYDD 491
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 2e-04 Identities = 36/223 (16%), Positives = 85/223 (38%), Gaps = 25/223 (11%) Query: 579 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDC 638 P ++ + + ++KT + ++ T + +++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 639 VSQAKNEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAK 698 A++ +E KE + T E + +++ AK E +K + V KV ++ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV--------PKVTSQ 1128 Query: 699 ESVKAYLDCVSQAKNEAEKKECEKLLTPEARKLLEE--AKESVKAYKDCVSKARNEKEKK 756 S K Q ++E + + E + ++E ++ + A + +K + ++ Sbjct: 1129 VSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 757 ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK 799 + T + E + + A +E+ K + Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPA--TTQPTVNSESSNKPKNR 1222 Score = 38.9 bits (90), Expect = 3e-04 Identities = 36/229 (15%), Positives = 83/229 (36%), Gaps = 10/229 (4%) Query: 763 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDC 822 P ++ + + ++KT + ++ T + R++ +EAK ++KA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 823 LSQARNEEERRACEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQSDILAK 882 A++ E + + T E + +++ KT E K + PK QS+ + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 883 --------ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAK 934 + K+ SQ T A+ ++ K + ++ + E+ + Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Query: 935 TEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKNEAEKKECEKL 983 T + + + + K ++SV++ V A + + L Sbjct: 1202 TTPATTQ-PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 37.4 bits (86), Expect = 7e-04 Identities = 34/196 (17%), Positives = 82/196 (41%), Gaps = 6/196 (3%) Query: 881 AKESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKK 940 ++ + ++ ++KT + ++ T + +++ +EAK +VKA A++ +E K Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 941 ECEKLLTPEAKKLLEEAKKSVKA--YLDCVSQAKNEAEKKECEKLLTPEAKKLLEQQALD 998 E + T E + +E K V+ + + K+E + + P+A+ E Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 999 CLKNAK----TEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQAKNEAEKKECEKLLT 1054 +K + T AD ++ K+ ++++ V +V V +N + + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 1055 PEARKLLEEAKESLKA 1070 + K + S+++ Sbjct: 1214 ESSNKPKNRHRRSVRS 1229 Score = 36.6 bits (84), Expect = 0.001 Identities = 32/173 (18%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 894 QAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKL 953 + E + E + P A ++ + + ++KT + ++ T + +++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT--PSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 954 LEEAKKSVKAYLDCVSQAKNEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCV 1013 +EAK +VKA A++ +E KE + T E + +++ AK E +K + V Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV 1122 Query: 1014 KDLPKDLQKKVLAKESVKAYLDCVSQAKNEAEKKECEKLLTPEARKLLEEAKE 1066 KV ++ S K Q ++E + + E + ++E + Sbjct: 1123 --------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQS 1160 Score = 34.7 bits (79), Expect = 0.005 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 7/169 (4%) Query: 708 VSQAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAK 767 S+ + E+ E T + R++ +EAK +VKA A++ E KE + T E K Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ---TTETK 1101 Query: 768 KLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQAR 827 + E +E K + + + ++ + + E A+E+ + + + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN--IKEPQ 1159 Query: 828 NEEERRACEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQ 876 ++ A + E +EQ + + + P Q Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Score = 32.7 bits (74), Expect = 0.016 Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 17/246 (6%) Query: 710 QAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKL 769 + NE + E + P A E E+V SK + E+ E + Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ---NRE 1067 Query: 770 LEEEAKESVKAYLDC--VSQAKTEA------EKKECEKLLTPEARKLL--EEAKESLKAY 819 + +EAK +VKA V+Q+ +E E KE + E K+ + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 820 KDCLSQARNEEERRACEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQSDI 879 + Q ++E + E + +++ A T++ K+ ++ + + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES- 1186 Query: 880 LAKESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEK 939 +V V + + + + K ++SV++ V A T + Sbjct: 1187 ---TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Query: 940 KECEKL 945 + L Sbjct: 1244 RSTVAL 1249 Score = 32.3 bits (73), Expect = 0.022 Identities = 27/187 (14%), Positives = 67/187 (35%), Gaps = 4/187 (2%) Query: 495 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 552 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 553 ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 612 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 613 CEKLLTPEAKKLLEEAKKSVKAYL--DCVSQAKNEAEKKECEKLLTPEAKKLLEQQALDC 670 ++ + + E A+++ + SQ A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 671 LKNAKTE 677 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 32.0 bits (72), Expect = 0.029 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 6/178 (3%) Query: 1037 VSQAKNEAEKKECEKLLTPEARKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEAR 1096 S+ + E+ E T + R++ +EAK ++KA A++ E + + T E Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 1097 KLLEQEVKKSVKAYLDCVSR-ARNEKEKQECEKLLTPEARKFLAKQVLNCLEKAGNEEER 1155 + ++E K V + KQE + + P+A +++ ++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 1156 KACLKNLPKDLQENVLAKESLKAYKDCLSQ-ARNEEERRACEKLLTPEARKLLEQEVK 1212 A + K+ NV + + + N E P + K Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT--QPTVNSESSNKPK 1220
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 870 bits (2249), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%) Query: 1 MEKAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M +AFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKISIKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNLGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTN GLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (297), Expect = 8e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQITIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.013 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELAALGFKKIKTLHQRHGDEEITEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E F K K L D + EE+KK L ++ EQ Sbjct: 112 AVNFALMTRDYQE-----FLKTKKLIVDAPDPKELEEQKK--------ALEKEKEAKEQA 158 Query: 84 QKNIEAFEKKNNSSVQKKAAKHKGLQELNEINATPLNDNPNSNSSAETKSNKDDNFDEM 142 QK A + K +++A L+ L + P N + N N S K +++ D+M Sbjct: 159 QK---AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 31.3 bits (70), Expect = 0.009 Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 207 KIKRKLNRFIGSILARTEVYKNVVAKYDDLTKKYDDLTKKYDELTGKYESL 257 ++ ++ +G T++Y+ + K D YD TKK + K +SL Sbjct: 124 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSL 174
>PF07132#Harpin protein (HrpN) Length = 356 Score = 33.1 bits (75), Expect = 1e-04 Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 37 IGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIG 81 +G +G G+GG +GG+ +LGG G + G G+GGG+G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 30.4 bits (68), Expect = 0.001 Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 33 LGRDIGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIGD 82 +G +G G+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 279 bits (716), Expect = 2e-97 Identities = 115/246 (46%), Positives = 164/246 (66%), Gaps = 3/246 (1%) Query: 12 ILRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSL 71 + R ++ LI PL A + LP + S P + + + +T L P++ Sbjct: 1 MRRLLSVAPVLLWLITPL--AFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAI 57 Query: 72 ILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYM 131 +L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ Sbjct: 58 LLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFS 117 Query: 132 DKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMIS 191 ++KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ S Sbjct: 118 EEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTS 177 Query: 192 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 251 ELKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 252 NLVASF 257 +L SF Sbjct: 238 SLAQSF 243
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.8 bits (74), Expect = 0.004 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 459 KSIVDGVFGKGENIKIALKNQNKSALEVVKELKFPYSKPKPTTETTAEM-KEKETKEVAE 517 KS+ + + E + AL ++ K+L PK E + KEKE KE A+ Sbjct: 100 KSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQ 159 Query: 518 KETKEKETKEKEVQENDTKEVQE-TQPKEAPTALQEFMANHSNLIEEIKSEFE 569 K K+K K KE + + ++ T P L +N+ NL E IK + E Sbjct: 160 KAQKDKREKRKEERAKNRANLENLTNAMSNPQNL----SNNKNLSELIKQQRE 208
>SECA#SecA protein signature. Length = 901 Score = 28.3 bits (63), Expect = 0.013 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 2049 bits (5311), Expect = 0.0 Identities = 1221/1296 (94%), Positives = 1258/1296 (97%), Gaps = 5/1296 (0%) Query: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIASGAAVGTVSGL 60 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIA+GAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYRSLLSSKIDGGWDWGNAAT 120 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLY+SLLSSKIDGGWDWGNAA Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYNLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 HYWVK GQWNKLEVDM++AVGTYNLSGL NFTGGDLDVNMQKATLRLGQFNGNSFTSYKD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 SADRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 SADRTTRVDFNAKNI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASSSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDRNAAQA 300 GATLNLAS+SVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNNTPSQSGAKNDKNESAKNDKQESS 360 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPN+ PS + N AKNDKQESS Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNN-----AKNDKQESS 355 Query: 361 QNNSNTQVINPPNSAQKTEVQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGYKASL 420 QNNSNTQVINPPNSAQKTE+QPTQVIDGPFAGGK+TVVNINRINTNADGTIRVGG+KASL Sbjct: 356 QNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASL 415 Query: 421 TTNAAHLHIGKGGVNLSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEF 480 TTNAAHLHIGKGG+NLSNQASGR+LLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEF Sbjct: 416 TTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEF 475 Query: 481 KAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTDKVNINK 540 KAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVT+KVNINK Sbjct: 476 KAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINK 535 Query: 541 LITASTNVAIKNFNINELLVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGV 600 LITASTNVA+KNFNINEL+VKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSI+SGGV Sbjct: 536 LITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGV 595 Query: 601 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTSKLMFNNLTLGQNA 660 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGT+KLMFNNLTLGQNA Sbjct: 596 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNA 655 Query: 661 VMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFNNNVDSATGFYQPLM 720 VMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFF+NNVDSATGFYQPLM Sbjct: 656 VMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLM 715 Query: 721 KINSAQDLIKNKEHVLLKAKIIGYGNVSAGTNSISNVNLIEQFKERLALYEHNNRMDICV 780 KINSAQDLIKNKEHVLLKAKIIGYGNVSAGT+SI+NVNLIEQFKERLALY +NNRMDICV Sbjct: 716 KINSAQDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICV 775 Query: 781 VRNTDDIKACGTAIGNQSMVNNPDNYKYLIGKAWKNIGISKTANGSKISVHYLGNSTPTE 840 VRNTDDIKACGTAIGNQSMVNNP+NYKYL GKAWKNIGISKTANGSKISVHYLGNSTPTE Sbjct: 776 VRNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTE 835 Query: 841 NSGNTTNLPTNTTSNARSAKNALAQNAPFAQPSATPSLVAINQHDFGTIESVFELANRSK 900 N GNTTNLPTNTT+ R A AL +NAPFA+ SATP+LVAINQHDFGTIESVFELANRS Sbjct: 836 NGGNTTNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSN 895 Query: 901 DIDTLYTHSGAQGRNLLQTLLIDSHDAGYARQMIDNTSTGEIIKQLNAATTTLNNVASLE 960 DIDTLY +SGAQGR+LLQTLLIDSHDAGYAR MID TS EI KQLN ATTTLNN+ASLE Sbjct: 896 DIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLE 955 Query: 961 HKQSGLQTLSLSNAMILNSRLVNLSRRHTNNIDSFAQRLQALKDQKFASLESAAEVLYQF 1020 HK SGLQTLSLSNAMILNSRLVNLSRRHTN+IDSFA+RLQALKDQ+FASLESAAEVLYQF Sbjct: 956 HKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQF 1015 Query: 1021 APKYEKPTNVWANAIGGTSLNNGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSN 1080 APKYEKPTNVWANAIGGTSLN+GGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSN Sbjct: 1016 APKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSN 1075 Query: 1081 QANSLNSGANNTNFGVYSRLFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLA 1140 QANSLNSGANNTNFGVYSR+FANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLA Sbjct: 1076 QANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLA 1135 Query: 1141 YSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSTNQVALKNGSSSQHLFNA 1200 YSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNS +VALKNG+SSQHLFNA Sbjct: 1136 YSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNA 1195 Query: 1201 SANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNAARNPLNTHARVMMGGE 1260 SANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNA RNPLNTHARVMMGGE Sbjct: 1196 SANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGE 1255 Query: 1261 LKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1296 LKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF Sbjct: 1256 LKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.9 bits (225), Expect = 9e-24 Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 12/235 (5%) Query: 11 KVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------ESVDIDVSD 64 K+A ITGA+ GIG A L QG + A+ + + +L E+ DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 SNALKEVFSNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQFCL 124 S A+ E+ + I + D+L+N AG G + EE + F VN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPG 184 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 PVKSNWEKTAFSVENFESEDSLYALEVNAAKSFYSGVYQNALS-PKAVAQKIVFL 238 +++ + + ++ EN + + + ++F +G+ L+ P +A ++FL Sbjct: 189 STETDMQWSLWADENGAEQ-----VIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 43.2 bits (102), Expect = 1e-06 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 210 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLSTDL------S 263 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 264 HMLNTPFPYAEEVKIKYGDLSFESGEETPSQNVQMPTTGSDGHESHIVPLNKIQTIMRER 323 + AE +K + G S G+E V+ + N+I ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 324 ALETFEIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 379 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 380 E 380 Sbjct: 323 T 323
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1458), Expect = 0.0 Identities = 128/610 (20%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAQINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S + + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTAGFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMLNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (369), Expect = 3e-45 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%) Query: 22 NMDKETVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 D ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 72 EPEVQILKDLKPDFIVVVAYGKILPKEILAIAP 104 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 22/170 (12%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 51 RAQYQSHSKALKQKEEALKEREREQKAQFDDAVKQASALALQDERAKIIEEARKNAFLEQ 110 + Q+ + QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQQLHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLERER 170 LE K ++ +L ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQENKYVEAV----NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 89.1 bits (221), Expect = 9e-23 Identities = 35/224 (15%), Positives = 74/224 (33%), Gaps = 29/224 (12%) Query: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIIALSIAIFIMMPLKENTPYFIDFAN 180 F++ ++ ++A+ +A A +A+ + PLK PY I Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 181 SDKHFAVVQRADTK--VDYGEAFLRNLVGSYITARETINHIDDKIRLNETIREQSSEEVW 238 + ++ + + Y EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 239 KTLEQLVSGKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 293 + +I +N D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVYFTKESV 179 Query: 294 SEKRYRVSLIYHFKPLIQFDYSSMP-------KNPTGFIVDKYS 330 + S I++ P KNP G+ V+ Y Sbjct: 180 TGSN---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 5e-05 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 10/90 (11%) Query: 148 VSGYGGTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANGANGTSGYQGVGSNPFPPIA 207 +SG G +N G++ TS N +NG G G GA+ SG+ +NP+ + Sbjct: 1 MSGGDGRGHNTGAHSTSGN-INGGPTGLGVGG--------GASDGSGW-SSENNPWGGGS 50 Query: 208 GSGNGSSGSSNSGYTPFMSGGGGIGGMGGG 237 GSG G S G GG G GG Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 37.8 bits (87), Expect = 1e-04 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 129 VSSKNGKGFSGSGASGMGYVSGYGGTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANG 188 +S +G+G + S G ++G G G +++G +S NN G +GS G Sbjct: 1 MSGGDGRGHNTGAHSTSGNING---GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 189 ANGTSGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPG 246 G G N +G G+G+ G+ ++ P G + G G + S G Sbjct: 58 GGSGHGNGGGNGN-----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 36.2 bits (83), Expect = 4e-04 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 122 GVSKSAYVSSKNGKGFSGSGASGMGYVSGYGGTSNN----AGSNGTSANGVNGTSGNNGA 177 G + A+ +S N G G G G G +S N GS G GN G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 178 KGENGSSGANGANGTSGYQGVGSNPFPPIAGSGNGSSGSSNSG 220 G +G G N ++ V FP ++ G G S S Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFG-FPALSTPGAGGLAVSISA 109 Score = 33.9 bits (77), Expect = 0.002 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 7/91 (7%) Query: 184 SGANGANGTSGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPY 243 SG +G +G N G G G S SG++ + GG G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW----- 56 Query: 244 SPGLQNGSGTNGINGTNGIDGTSGANGSNSA 274 G +G G G NG +G +G N S A Sbjct: 57 --GGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 33.1 bits (75), Expect = 0.003 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 193 SGYQGVGSNPFPPIAGSGNGSSGSSNSGYTPFMSGGGGIGGMGGGFIPFPYSPGLQNGSG 252 SG G G N + +SG+ N G T GGG G G P+ G +G Sbjct: 2 SGGDGRGHN------TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 253 TNGINGT-NGIDGTSGANGSNSANGGTASA 281 G +G NG + GS + +A A Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.4 bits (81), Expect = 7e-04 Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 26/216 (12%) Query: 527 EDAEIVSKEVGEFTRQSKNYSTEKSQLV---------FGGSSSYSHEGRNLLTAQDIMNI 577 ++AE K E ++ K EK++ ++ S E + + AQ ++ Sbjct: 141 KEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSA 200 Query: 578 NSDEVIVIVTGAKATPLKLKANYWFKDKELLKRANLPIDLEVERQRVEE----------- 626 EV+ + K +L ++ +D E+ A +L + +E Sbjct: 201 AQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPR 260 Query: 627 ---PIQPTTEIETTPNQNKADLGPSNKGEKVENESNERNTNENNPTTPQELENSNLKESE 683 P+Q E T + + G + ++ + ++E N N Q + + + S Sbjct: 261 ANDPLQNRPFFEAT--RRRVGAGKIREEKQKQVTASETRINRINADITQI-QKAISQVSN 317 Query: 684 KDDESTITLENANENIEQGNHNEIDEILKKPLSEIS 719 + + A EN+++ +N ++ +K + Sbjct: 318 NRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATV 353
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 28.0 bits (62), Expect = 0.014 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%) Query: 5 TQNANKHEIQNSSENEVELTEEKSFLEMSEDEYYEYQQEQYIQMNENDGIARVSAKLEQQ 64 T NA+ ++ QN++ E T E+ E SE + Q+ +N ND I KL + Sbjct: 31 TANADSNK-QNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDMI-----KLAPK 84 Query: 65 ELEREEAELESKALQDYEENQIQRAGEI 92 E+ E AE E K +D ++++ EI Sbjct: 85 EMPLESAEKEEKKSEDNKKSEEDHTEEI 112
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 5e-78 Identities = 63/147 (42%), Positives = 94/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.042 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVDLDLFYTELPN-----KAYLDYMEIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (331), Expect = 6e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.002 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%) Query: 171 KENKENVLENALENTPTNNKPLKEEKEE----AKEKEEETIIIGDNTNAMKIVKKDIQKG 226 K +E + + L T N+ + E+ K +EE+ II D A+ + Q Sbjct: 334 KRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKAL-----ETQYV 388 Query: 227 YKALKSSQ--RKWYCLGICSKKSKLSLMPEEIFNDKQFTYFKF 267 + ALK + R + K+SK +MP EIF+D FTYF F Sbjct: 389 HNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIFDDGTFTYFGF 430
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 30.7 bits (69), Expect = 0.012 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 272 ALFEEAANEPKENVSLNQTPVFAKESANNLVFSHKVSAL---LGVENLAVIDTKDALLVA 328 +LF P +V++ P A + H VS+ L N+ ++D LL Sbjct: 162 SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQ 221 Query: 329 HKDKAKDLKA 338 +DL Sbjct: 222 SNTSGRDLND 231
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.6 bits (116), Expect = 1e-08 Identities = 51/346 (14%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNRPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNIQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYESIAQIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 362 bits (930), Expect = e-127 Identities = 116/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIISGVDIMVHPIVVTSQDITLKITKEPLNN--------SKNTQDLDNNMSLDTAHN 294 ++GTI+ G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.024 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 231 DITQRFYVINEHERAEAIM-HLLDTQAPKKSI-VFTRTKKEADELHQFLASKNYKSTALH 288 D+ Y + E E+ +AI+ + + A + + V T + ++++ + L K L+ Sbjct: 422 DLPDLVY-MTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 289 GDMDQRDRRASIMAFKKNDADVLVATDVASRGLDI 323 + A+I+A A V +AT++A RG DI Sbjct: 481 AKFHANE--AAIVAQAGYPAAVTIATNMAGRGTDI 513
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 27.3 bits (60), Expect = 0.040 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 91 LSYSNAFSLQVGVKNISRFSLNKCVLRLEVLKN-PHNFVEEHAFKWFVKKSYEKTFKEKI 149 ++Y N S +G N+S F+ K +LR+ + K+ P ++ A + + E + Sbjct: 372 ITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYL--SAIPGYAGE------YEVL 423 Query: 150 LPKESKVFSFFIDNYSHSKT 169 L SK +D+Y Sbjct: 424 LNHGSKFKINKVDSYKDGTV 443
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.007 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 557 bits (1436), Expect = 0.0 Identities = 181/582 (31%), Positives = 295/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSRDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLNPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMVPVIDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ +DN T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFS----AVDN-TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.7 bits (84), Expect = 5e-05 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAITTLDEKMKKSEDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDSSQKVALALTEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + + + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 113 bits (283), Expect = 2e-28 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 11 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEIKQDIEDTIGIDCSNANEVS 169 + + INKID ++ + QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 7e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 169 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 228 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 229 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 285 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 286 KNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 345 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 346 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 380 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.016 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEP 481 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 9e-06 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDRKTTPKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.047 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMELPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.3 bits (73), Expect = 0.002 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQ-NLNALLECISKHLNPSAW 176 + L +L ++Q Q L L+PL A+ + +L+ + + I LN W Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAANLHLSFIRDVI---LNADEW 198
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.7 bits (67), Expect = 0.006 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.3 bits (125), Expect = 5e-10 Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 P P P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.1 bits (109), Expect = 6e-08 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 A Q PP P P P P P P E P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 143 KVEEKKVVEEKKEE 156 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 45.0 bits (106), Expect = 1e-07 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK-KPNHKHKALKKV 141 P P P P P P PPK +PKPKPKP+PK + + + V Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Query: 142 EKVEE 146 + VE Sbjct: 115 KPVES 119 Score = 38.8 bits (90), Expect = 2e-05 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 38/218 (17%) Query: 101 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 160 P PP +P +P EP+P+P+P P+ P +E VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 161 EQKVEQKVEQKKVEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGE 220 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 221 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 280 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 281 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 318 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 34.6 bits (79), Expect = 3e-04 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 132 P+ P P P P PKP K + +PK +P + Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 14/56 (25%), Positives = 20/56 (35%) Query: 76 PSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKP 131 P + P K P P PKP++K + +PK KP +P Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.4 bits (60), Expect = 0.036 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 27 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 81 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 82 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 133 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 2e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLEGYEFT 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 30.6 bits (69), Expect = 0.005 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2313), Expect = 0.0 Identities = 288/1040 (27%), Positives = 519/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEGELGQFELMHALRKELRS 631 + + E FT + G QN FV LKP +ER + ++H + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 33.9 bits (77), Expect = 0.014 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%) Query: 702 SYSFDGINNTFNEDKFNGGSFNFNHAEQTDAFNNNSFNGGSFSFNAKQVDFNHNSFNGGV 761 SYS + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 762 FNFNKTSKVSFTGDTFNVNSQFKINGAQTD 791 + + T N K +Q + Sbjct: 331 YKDKPND--KPSNTTQNNAKNDKQESSQNN 358
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 304 bits (780), Expect = 6e-96 Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 13/376 (3%) Query: 2 FAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTDALQLNTYTQQMSRLAKLSNFA 61 +A + I + T+ L ++ K + L L+ SRL LS Sbjct: 924 YARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRH 983 Query: 62 SFDSTDFSERLSSLKNQRFADATPNAMDVILKYSQRDKLKNNLWATGVGGVSFVGNGTGT 121 + F++RL +LK+QRFA +A +V+ +++ + + N+WA +GG S G + Sbjct: 984 TNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSGGNAS 1042 Query: 122 LYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSRSNNVDMGLYARAFIKKSEL 176 LYG + G D ++ G IVGG+ +YGYS F + +S +NN + G+Y+R F + E Sbjct: 1043 LYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEF 1102 Query: 177 TFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNARVNYGYDFMFKNKSIILKPQIG 236 F G++++ ++ LL +NQSY Y ++ R +YGYDF F +++LKP +G Sbjct: 1103 DFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVG 1162 Query: 237 LRYYYIGMTGLEGVMDNALYNQFKANADPSKKSVLTIDLALENRHYFNTNSYFYAIGGVG 296 + Y ++G T + N+ + S + + +E R+Y+ SYFY GV Sbjct: 1163 VSYNHLGSTNFKS---NS-NQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVL 1218 Query: 297 RDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGGEVRLFKSFYANAGVGARFGLD 356 ++ + V + R NT A + GGE++L K + N G L Sbjct: 1219 QEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELKLAKEVFLNLGFVYLHNLI 1275 Query: 357 YKMINITGNIGMRLAF 372 + + N+GMR +F Sbjct: 1276 SNIGHFASNLGMRYSF 1291
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 126 bits (317), Expect = 4e-38 Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKEAKLAFEMCAYRIKKYIGAYMVALGRVDAIIFTGGMGENYSALRES 59 R++E + GDK A+LA + AYR+KK IG+Y A+G VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALCKPTNDNPGNGLVDLSQPDTKVQVLRIPTDEELEIALQTKKVLEK 116 + +GLE LG L K N G +S D+KV V+ +PT+EE IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 264 bits (676), Expect = 3e-90 Identities = 102/185 (55%), Positives = 133/185 (71%) Query: 5 GGDKFHAPVLVNELVMQEIGNLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHAT 64 GG+ F + VL+ + V++ I + LAPLHNPAN+ GI+ + P +P +AVFDTAFH T Sbjct: 94 GGEYFTSSVLITDDVLKAITDCIELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQT 153 Query: 65 MPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIAYEEFNAISLHLGNGSN 124 MP YAY+Y +PYE Y KY+IR+YGFHGTSH YV++ AA+ LN E I+ HLGNGS+ Sbjct: 154 MPDYAYLYPIPYEYYTKYKIRKYGFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSS 213 Query: 125 AAAIQKGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYTAQCADKRLEEVVKILNYESGL 184 AA++ GKS+DTSMG TPLEGL MGTR G IDP+++ Y + + EEVV ILN +SG+ Sbjct: 214 IAAVKNGKSIDTSMGFTPLEGLAMGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGV 273 Query: 185 KGICG 189 GI G Sbjct: 274 YGISG 278
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 96.0 bits (239), Expect = 3e-27 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 6/99 (6%) Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 60 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGG 97 KDH + ++ + L G+IKD ++IDA+GHRVV GG Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGG 95
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 52.8 bits (126), Expect = 3e-09 Identities = 48/230 (20%), Positives = 82/230 (35%), Gaps = 9/230 (3%) Query: 270 KRDKTLSKKKSKKTPTKAQTTAPSIAPENAPKIPLKTPPLMPLIGANPPNDNPPTPLEKE 329 KR++T+ + TP Q PS+ N + P+ P P TP E Sbjct: 987 KRNQTV-DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPA--------PATPSETT 1037 Query: 330 ETTKEASDNKEKTKEANNSAQSAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYKP 389 ET E S + KT E N + AQ + E KS T + Q E +E + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 390 PMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNNLNALGFEG 449 ++ + + +E KVE + + V +T + + N + + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 450 VDLSFSQDSSKEQPKEQLRELFKEQESSPLKENALKSYQENTDNEHKETS 499 + + EQP ++ ++ + N S EN +N T+ Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 8e-04 Identities = 29/184 (15%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 216 + A LA+ ++ + + R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217