| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17190 | HTHFIS | 90 | 7e-22
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 89.9 bits (223), Expect = 7e-22
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 8 VLLVEDDPVFRQIVASFLDSRGAQVTQACDGEEGLSFFKSQHFDVVLADLSMPKLGGLDM 67
+L+ +DD R ++ L G V + + + D+V+ D+ MP D+
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65
Query: 68 LKEMTRLAPLVPSVVISGNNVMADVVEALRIGASDYLVKPVSDLFIIEQAIKQS 121
L + + P +P +V+S N ++A GA DYL KP F + + I
Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP----FDLTELIGII 115
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17195 | VACJLIPOPROT | 232 | 6e-79
| VacJ lipoprotein signature. |
| >VACJLIPOPROT#VacJ lipoprotein signature.
Length = 251
Score = 232 bits (594), Expect = 6e-79
Identities = 96/265 (36%), Positives = 142/265 (53%), Gaps = 20/265 (7%)
Query: 1 MKLKWMGLSLGLLLLPKVQAAEVPVSDTIQQETPAKVQITYDDPRDPFEGFNRAMWDFNY 60
MKL+ L+LG LL +D + DP EGFNR M++FN+
Sbjct: 1 MKLRLSALALGTTLL---VGCASSGTDQQGRS-------------DPLEGFNRTMYNFNF 44
Query: 61 LYLDRYLYRPVAHGYNDYVPMPAKTGINNFVQNLEEPSSLVNNVLQGKWGWAANAGGRFT 120
LD Y+ RPVA + DYVP PA+ G++NF NLEEP+ +VN LQG RF
Sbjct: 45 NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFF 104
Query: 121 INTTVGLLGVIDVADMMGMSRKQDE---FNEVLGYYGVPNGPYFMAPFAGPYVVRELASD 177
+NT +G+ G IDVA M ++ E F LG+YGV GPY PF G + +R+ D
Sbjct: 105 LNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGD 164
Query: 178 WVDGLYFPLSELTMWQTIVKWGLKNLHSRASAIDQERLVDNALDPYAFVKDAYLQHMDYK 237
D LY LS LT ++ KW L+ + +RA +D + L+ + DPY V++AY Q D+
Sbjct: 165 MADALYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFI 224
Query: 238 VYDGNV-PQKQDDDELLEQYMQELE 261
G + PQ+ + + ++ +++++
Sbjct: 225 ANGGELKPQENPNAQAIQDDLKDID 249
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17215 | TYPE3IMSPROT | 58 | 1e-13
| Type III secretion system inner membrane S protein ... |
| >TYPE3IMSPROT#Type III secretion system inner membrane S protein
family signature.
Length = 354
Score = 58.2 bits (141), Expect = 1e-13
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 10 AVALSYDG--HNAPKIVATGEGLIAEEIIALAKANGVYIHQDPHLSHFL-QLLELGDEIP 66
A+ + Y P + + + +A+ GV I Q L+ L + IP
Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327
Query: 67 KELYLLIAELIAFVYMLDGKFPEQWNNMHQKIV 99
E AE++ ++ + + H +++
Sbjct: 328 AEQIEATAEVLRWLERQNIE------KQHSEML 354
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17230 | IGASERPTASE | 32 | 0.004
| IgA-specific serine endopeptidase (S6) signature. |
| >IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.
Length = 1541
Score = 32.0 bits (72), Expect = 0.004
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 4/151 (2%)
Query: 19 EDDAPSQAVSPQSIVKADSNQNVATNQTEAALLDAAILAENGRTAASQAHERAITPTVQL 78
++ + + Q+ A S QT A + E A + + P ++
Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE--EKAKVETEKTQEVP--KV 1125
Query: 79 QPKATPRQNEFVEPVSKIASQVDKQALEKLLAPVLKAKTVEPTPSFVEVTPAVDVQPVVE 138
+ +P+Q + + + + P + T T + T + QPV E
Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185
Query: 139 VPQAQPALEEPVNDEIIAEEVVEPVVVPETQ 169
N E +P V E+
Sbjct: 1186 STTVNTGNSVVENPENTTPATTQPTVNSESS 1216
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17245 | HTHFIS | 66 | 4e-14
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 66.4 bits (162), Expect = 4e-14
Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 2 AIKVLVVDDSSFFRRRVSEIVNQDPELEVIATASNGAEAVKMAAELNPQVITMDIEMPVM 61
+LV DD + R +++ +++ + SN A + A + ++ D+ MP
Sbjct: 3 GATILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60
Query: 62 DGITAVREIMAKCP-TPILMFSSLTHDGAKATLDALDAGALDFLPKRFEDIATNKDDAIL 120
+ + I P P+L+ S+ + + A + GA D+LPK F D+
Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGR 117
Query: 121 LLQQRVKALGRRRMFRPIARPVVTSTPSVRPTSSVLGTTSIASHTPAT 168
L + + + P+V + +++ + + T T
Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQ---EIYRVLARLMQTDLT 162
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17250 | PF06580 | 45 | 6e-07
| Sensor histidine kinase |
| >PF06580#Sensor histidine kinase
Length = 349
Score = 45.2 bits (107), Expect = 6e-07
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 23/105 (21%)
Query: 435 TLNKEIDLIMV---------GEETDLDKNLVEALADPLVH------LVRNSVDHGIEMPN 479
+L E+ ++ + + + A+ D V LV N + HGI
Sbjct: 217 SLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA--- 273
Query: 480 EREASGKPRTGTITLSASQEGDHILLKIEDDGAGMDPEKLKKIAI 524
P+ G I L +++ + L++E+ G+ +
Sbjct: 274 -----QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17260 | HTHFIS | 90 | 3e-24
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 89.9 bits (223), Expect = 3e-24
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 6 KILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKGDFDFVVTDWNMPGMQGI 65
IL+ DD + +R ++ L G++ + +T + GD D VVTD MP
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63
Query: 66 DLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPF 110
DLL I+ LPVL+++A+ I A++ G Y+ KPF
Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17275 | PF05272 | 31 | 0.013
| Virulence-associated E family protein |
| >PF05272#Virulence-associated E family protein
Length = 892
Score = 30.8 bits (69), Expect = 0.013
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 240 VKQGGVVALVGPTGVGKTTSLAKLA 264
K V L G G+GK+T + L
Sbjct: 593 CKFDYSVVLEGTGGIGKSTLINTLV 617
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17285 | TYPE3IMSPROT | 326 | e-112
| Type III secretion system inner membrane S protein ... |
| >TYPE3IMSPROT#Type III secretion system inner membrane S protein
family signature.
Length = 354
Score = 326 bits (838), Expect = e-112
Identities = 94/347 (27%), Positives = 179/347 (51%), Gaps = 2/347 (0%)
Query: 6 SGERSEEPTGRRLEQAREKGQIARSKELGTAAVLISAACGFYMLGPSLAKSLTRVFETVF 65
SGE++E+PT +++ AR+KGQ+A+SKE+ + A++++ + L + +++ +
Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LI 59
Query: 66 TMDRAQVFDTEEMFNVWGVVAGEIVWPMAKIMLLIVVVAFIGNVALGGMNFSTQAMMPKA 125
+++ + ++ + V V E + ++ + ++A +V G S +A+ P
Sbjct: 60 PAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119
Query: 126 SKMSPAAGLKRMFGVQALVELTKGIAKFSVVAFSAYLLLSFYFNEILLLSSDHLPGNVYH 185
K++P G KR+F +++LVE K I K +++ ++++ +L L + +
Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPL 179
Query: 186 ALDLLVWMFILLCSSILLIVVIDVPFQLWNHNKQLKMTKQEVKDEYKDTEGKPEVKGRVR 245
+L + ++ ++I + D F+ + + K+LKM+K E+K EYK+ EG PE+K + R
Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRR 239
Query: 246 QMQRELAQRRMMAEVPNADVIVVNPEHFAVAIKYDVQRSVAPFVVAKGVDDVAFKIREIA 305
Q +E+ R M V + V+V NP H A+ I Y + P V K D +R+IA
Sbjct: 240 QFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299
Query: 306 RAHNVTIVSAPPLARAIYHTTKLDQQIPEGLFTAVAQILAYVFQLRQ 352
V I+ PLARA+Y +D IP A A++L ++ +
Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17290 | TYPE3IMRPROT | 122 | 5e-36
| Type III secretion system inner membrane R protein ... |
| >TYPE3IMRPROT#Type III secretion system inner membrane R protein
family signature.
Length = 261
Score = 122 bits (309), Expect = 5e-36
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 1/249 (0%)
Query: 9 VQTIAAYMWPLFRVASMLMVMVVFGAATTPTRVRLLLAMAITFAIAPVLPPVQNADLFSL 68
+ + Y WPL RV +++ + + P RV+L LAM ITFAIAP LP + +FS
Sbjct: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP-ANDVPVFSF 68
Query: 69 SAVFITAQQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNF 128
A+++ QQI+IG+A+GF Q G+IIG+Q L FA+ VDP S PV+
Sbjct: 69 FALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARI 128
Query: 129 FLLLATLIFLAVDGHLLMIRMLVVSFETLPISNQGLTLTSYRALADWGSYMFGAALTMSI 188
+LA L+FL +GHL +I +LV +F TLPI + L ++ AL GS +F L +++
Sbjct: 129 MDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLAL 188
Query: 189 SAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMAHFDEVWAAAQ 248
I LL +NL+ G++ R APQL+IF IGFP+T+ G+ ++ + + + +++
Sbjct: 189 PLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248
Query: 249 VLLCDMLAL 257
LL D+++
Sbjct: 249 NLLADIISE 257
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17295 | TYPE3IMQPROT | 49 | 2e-11
| Type III secretion system inner membrane Q protein ... |
| >TYPE3IMQPROT#Type III secretion system inner membrane Q protein
family signature.
Length = 86
Score = 48.6 bits (116), Expect = 2e-11
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 4 EALIDIFREALSVIVIMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLIITLLALM 63
+ L+ +AL +++I+ + IGL+V +FQ T + EQTL F +L+ L L
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
Query: 64 FMGHWLVETLMDFFVEMV 81
+ W E L+ + +++
Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17300 | FLGBIOSNFLIP | 278 | 4e-97
| Escherichia coli: Flagellar biosynthetic protein Fl... |
| >FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP
signature.
Length = 245
Score = 278 bits (712), Expect = 4e-97
Identities = 126/244 (51%), Positives = 183/244 (75%), Gaps = 3/244 (1%)
Query: 4 RILALVGFVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLI 63
R+L++ ++ L P A+A LP +T P G +S+ +Q L+ +TSL+F+PA+L+
Sbjct: 3 RLLSVAPVLLWLITPLAFAQ---LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59
Query: 64 MLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEE 123
M+TSFTRIIIV +LR A+G P NQVL+G++LF+TFFIM+PV D+IY + +P+ EE
Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119
Query: 124 QLTLQQAFEKGKEPIRSFMLGQVRTTDLKTFIEISGYKNIKSPEEAPMSVLIPAFITSEL 183
++++Q+A EKG +P+R FML Q R DL F ++ ++ PE PM +L+PA++TSEL
Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179
Query: 184 KTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVLGTL 243
KTAFQIGF +F+PFL++DLV+AS+LMA+GMMM+ P ++LPFK+MLFVLVDGW L++G+L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Query: 244 ANSF 247
A SF
Sbjct: 240 AQSF 243
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17310 | FLGMOTORFLIN | 109 | 6e-34
| Flagellar motor switch protein FliN signature. |
| >FLGMOTORFLIN#Flagellar motor switch protein FliN signature.
Length = 137
Score = 109 bits (273), Expect = 6e-34
Identities = 53/119 (44%), Positives = 79/119 (66%)
Query: 7 DDWAAAMAEQALEEANAIELDELVDDSRPISKAEAAKLDTILDIPVTISMEVGRSYISIR 66
D WA A+ EQ + +D I+DIPV +++E+GR+ ++I+
Sbjct: 17 DLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIK 76
Query: 67 NLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 125
LL+L QGSVV LD +AGEPLD+++NG LIA GEVVVV DK+G+R+TD+I+ +ER+++L
Sbjct: 77 ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17315 | FLGMOTORFLIM | 248 | 1e-82
| Flagellar motor switch protein FliM signature. |
| >FLGMOTORFLIM#Flagellar motor switch protein FliM signature.
Length = 344
Score = 248 bits (635), Expect = 1e-82
Identities = 87/327 (26%), Positives = 164/327 (50%), Gaps = 12/327 (3%)
Query: 1 MSDLLSQDEIDALLHGVDDVDDDDEIDSAG----HDARSYDFSSQDRIVRGRMPTLEIVN 56
M+++LSQDEID LL + D E D+ YDF D+ + +M TL +++
Sbjct: 1 MTEVLSQDEIDQLLTAISSGDASIE-DARPISDTRKITLYDFRRPDKFSKEQMRTLSLMH 59
Query: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 116
E FAR S+ +R V + V L + E++ ++ P++L ++ PLKG A++ +
Sbjct: 60 ETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEV 119
Query: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFD 176
+ + F ++D FGG G+ R+ T E +++ ++ I + +++W V+D+
Sbjct: 120 DPSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPR 177
Query: 177 YLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAG--VQS 234
E NP A IV P+E+VV+ + +V G + +PY IEPI L + S
Sbjct: 178 LGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSS 237
Query: 235 DKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIE---LPEYIMM 291
++ + ++ L D++ V + A + L+++D++ + GDII + + + ++
Sbjct: 238 VRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVL 297
Query: 292 KIEDLPTYRCKMGRSRDNLALKIYEKI 318
I + + C+ G +A +I E+I
Sbjct: 298 SIGNRKKFLCQPGVVGKKIAAQILERI 324
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17325 | FLGHOOKFLIK | 52 | 4e-09
| Flagellar hook-length control protein signature. |
| >FLGHOOKFLIK#Flagellar hook-length control protein signature.
Length = 375
Score = 52.1 bits (124), Expect = 4e-09
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 592 MKQQLITMVSQGIQHAEIRLDPPELGHMLVKIQVHGDQTQVQFHVTQTQTRDLVEQAMPR 651
+ Q + QG Q AE+RL P +LG + + ++V +Q Q+Q R +E A+P
Sbjct: 244 LSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPV 303
Query: 652 LRELLQEQGMQLADSHVSQGGQGERREGSFGDGGGSSGADVDEISAEE-----LHLGLNQ 706
LR L E G+QL S++S +++ + A+ + ++ E+ + + L
Sbjct: 304 LRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQG 363
Query: 707 ASSVNSGIDYYA 718
+ NSG+D +A
Sbjct: 364 RVTGNSGVDIFA 375
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17330 | FLGFLIJ | 44 | 2e-08
| Flagellar FliJ protein signature. |
| >FLGFLIJ#Flagellar FliJ protein signature.
Length = 147
Score = 44.0 bits (103), Expect = 2e-08
Identities = 39/145 (26%), Positives = 70/145 (48%)
Query: 1 MANADPLLLVLKLANDAEEQAALLLKSAQLECQKRLNQLSALNNYRLEYMKQMQSQQGQA 60
MA L + LA E AA LL + CQ+ QL L +Y+ EY + S
Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60
Query: 61 ISASHYHQFHRFIRQIDDAITQQNRVVADGEKQKEYRQQHWLEKQKKRKAVELLLASKEK 120
I+++ + + +FI+ ++ AITQ + + ++ + W EK+++ +A + L +
Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120
Query: 121 KRQVVEQKREQKMTDEFASQQFYRR 145
+ E + +QK DEFA + R+
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17340 | FLGFLIH | 89 | 6e-23
| Flagellar assembly protein FliH signature. |
| >FLGFLIH#Flagellar assembly protein FliH signature.
Length = 228
Score = 89.1 bits (220), Expect = 6e-23
Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 4/201 (1%)
Query: 50 AAKPTTVESVSPPTMAEIEDIRAQAEEEGFA---EGKQQGYEQGLEKGRLEGLEQGHTEG 106
A + P IE+ E++ + +QGY+ G+ +GR +G +QG+ EG
Sbjct: 16 APPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEG 75
Query: 107 LAQGHEQGLETGLAQAKVLLSRFEALLTQFEKPLQLLDGDIELSLLNLSMTLAKSVIGHE 166
LAQG EQGL +Q + +R + L+++F+ L LD I L+ +++ A+ VIG
Sbjct: 76 LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQT 135
Query: 167 LKTHPEQVLSALRLGIESLPIKEQAVTIRLHPDDVILVEQLYSTAQLTRSKWELEVDPTL 226
++ ++ ++ P+ +R+HPDD+ V+ + A L+ W L DPTL
Sbjct: 136 PTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLG-ATLSLHGWRLRGDPTL 194
Query: 227 SAGDCILSSHRSLVDLTLSSR 247
G C +S+ +D ++++R
Sbjct: 195 HPGGCKVSADEGDLDASVATR 215
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17345 | FLGMOTORFLIG | 286 | 3e-97
| Flagellar motor switch protein FliG signature. |
| >FLGMOTORFLIG#Flagellar motor switch protein FliG signature.
Length = 344
Score = 286 bits (733), Expect = 3e-97
Identities = 109/350 (31%), Positives = 195/350 (55%), Gaps = 7/350 (2%)
Query: 1 MAENKTKEVAPAAAPAFNIKDISGVEKTAILLLSLSEADAASILKHLEPKQVQKVGMAMA 60
M E K KE+ ++ ++G +K AILL+S+ ++ + K+L ++++ + +A
Sbjct: 1 MEEKKEKEIL-------DVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIA 53
Query: 61 AMDEFGQEKVIGVHKLFLDDIQKYSSIGFNSEEFVRKALTAALGEDKAGNLIEQIIMGSG 120
++ E V F + + I ++ R+ L +LG KA ++I +
Sbjct: 54 KLETITSELKDNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQ 113
Query: 121 AKGLDSLKWMDARQVATIIQNEHPQIQTIVLSYLEPDQAAEIFGQFPENTRLDLMMRIAN 180
++ + ++ D + IQ EHPQ ++LSYL+P +A+ I P + ++ RIA
Sbjct: 114 SRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIAL 173
Query: 181 LEEVQPAALQELNDIMEKQFAGQGGAQAAKMGGLKAAANIMNYLDTGIESQLMETMRESD 240
++ P ++E+ ++EK+ A GG+ I+N D E ++E++ E D
Sbjct: 174 MDRTSPEVVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEED 233
Query: 241 EEMAQQIQDLMFVFENLIDVDDRGIQALLREVQQDVLMKALKGTDDQLKEKILGNMSKRA 300
E+A++I+ MFVFE+++ +DDR IQ +LRE+ L KALK D ++EKI NMSKRA
Sbjct: 234 PELAEEIKKKMFVFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRA 293
Query: 301 AELLRDDLEAMGPIRISEVEVAQKEILSIARRLSDSGEIMLGGGGGDEFL 350
A +L++D+E +GP R +VE +Q++I+S+ R+L + GEI++ GG ++ L
Sbjct: 294 ASMLKEDMEFLGPTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17350 | FLGMRINGFLIF | 305 | 5e-99
| Flagellar M-ring protein signature. |
| >FLGMRINGFLIF#Flagellar M-ring protein signature.
Length = 559
Score = 305 bits (782), Expect = 5e-99
Identities = 161/560 (28%), Positives = 266/560 (47%), Gaps = 42/560 (7%)
Query: 29 NLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVLDVLDKNKV 87
L + ++ +I+A + +A+ V ++LWA+ P+YR L + Q+ ++ L + +
Sbjct: 15 WLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNI 74
Query: 88 KYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDFLNQDSGFGVSQRMEQARLKHS 145
Y+ I+VP DK E+++ L++ G+ A L FG+SQ EQ + +
Sbjct: 75 PYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRA 134
Query: 146 QEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRG-GLGQGEVDAIV 204
E LAR IE L V A+V LA+PK ++F R PSA+V + G L +G++ A+V
Sbjct: 135 LEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVV 194
Query: 205 DIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEYRTKIESILV 264
+V+SAV GL P VT+ D +G LL + G +L+ E+ + +IE+IL
Sbjct: 195 HLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDL-NDAQLKFANDVESRIQRRIEAILS 253
Query: 265 PILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPALRSEMTVENNTT-----GGSSGGIPG 319
PI+G N +QV +DF EQT + Y+P+ A ++ + G GG+PG
Sbjct: 254 PIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPG 313
Query: 320 ALSNQPP---------------MESNIPQDAT-KATESVTAGNSHREATRNFELDTTISH 363
ALSNQP N PQ +T + S ++ R T N+E+D TI H
Sbjct: 314 ALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRH 373
Query: 364 TRQQVGAVRRISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDV 423
T+ VG + R+SV+V V++K A G+ + T ++ I L A+GFS +RGD
Sbjct: 374 TKMNVGDIERLSVAVVVNYKTLADGKP-----LPLTADQMKQIEDLTREAMGFSDKRGDT 428
Query: 424 LEVVTVPFMDQLVEDLPALELWEQPWFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDS 483
L VV PF + L W+Q F + L L+L V + ++ + P
Sbjct: 429 LNVVNSPF-SAVDNTGGELPFWQQQSFIDQLLAAGRWL----LVLVVAWILWRKAVRPQL 483
Query: 484 VNMPEDGRLGNELAEIEDQYAADTLGMLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRA 543
E+ + E A++ + L+ + E + + + M + IR
Sbjct: 484 TRRVEEAKAAQEQAQVRQETEEAVEVRLS--KDEQLQQRRANQRLGA----EVMSQRIRE 537
Query: 544 LVANEPELSTQVVKNWLQDN 563
+ N+P + V++ W+ ++
Sbjct: 538 MSDNDPRVVALVIRQWMSND 557
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17355 | FLGHOOKFLIE | 57 | 6e-14
| Flagellar hook-basal body complex protein FliE signa... |
| >FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE
signature.
Length = 103
Score = 56.6 bits (136), Expect = 6e-14
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 26 QPNIMQQVNNTSGADFGQLLSQAVGNVSGLQSTSSNLATRLEMGDTTVTLSDTVIAREKA 85
Q+ F L A+ +S Q+ + A + +G+ V L+D + +KA
Sbjct: 18 MSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKA 77
Query: 86 SVAFEATVQVRNKLVEAYKEIMSMPV 111
SV+ + +QVRNKLV AY+E+MSM V
Sbjct: 78 SVSMQMGIQVRNKLVAAYQEVMSMQV 103
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17360 | HTHFIS | 456 | e-161
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 456 bits (1176), Expect = e-161
Identities = 167/483 (34%), Positives = 248/483 (51%), Gaps = 42/483 (8%)
Query: 1 MSEAKLLLVEDDASLREALLDTLMLAQYECIDVASGEDAILALKQHQFDLVISDVQMQGI 60
M+ A +L+ +DDA++R L L A Y+ ++ + DLV++DV M
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60
Query: 61 GGLGLLNFLQQHHPKLPVLLMTAYATIGSAVDAIKLGAVDYLAKPFAPEVLLNQVSRYLP 120
LL +++ P LPVL+M+A T +A+ A + GA DYL KPF L+ + R L
Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
Query: 121 LKQNVDQPVVAD-----------EKSLALLALAQRVAASDASVMILGPSGSGKEVLARYI 169
+ + D + + R+ +D ++MI G SG+GKE++AR +
Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
Query: 170 HQHSSRADQAFVAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEI 229
H + R + FVAIN AAIP +++E+ LFG+EKGAFTGA G+FEQA+GGTL LDEI
Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240
Query: 230 SEMDLGLQAKLLRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAVVAAGGFREDLYYRI 289
+M + Q +LLRVLQ+ E +GGR I+ DVR++A +N+DLK + G FREDLYYR+
Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300
Query: 290 NVFPLAWPALSQRPADILPLARHLLVKHAKALNVADVPELDENARRRLLSHRWPGNVREL 349
NV PL P L R DI L RH + + A+ + V D+ A + +H WPGNVREL
Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFV-QQAEKEGLD-VKRFDQEALELMKAHPWPGNVREL 358
Query: 350 DNVIQRALILRAGQVITANDIIIDAQDVILG--------------------------GED 383
+N+++R L VIT I + + I
Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418
Query: 384 LDQFAAEPDGLGEELKAQEHVIILETLNQCQGSRKLVAEKLGISARTLRYKMARMRDMGI 443
L E+ +IL L +G++ A+ LG++ TLR K +R++G+
Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK---IRELGV 475
Query: 444 QLP 446
+
Sbjct: 476 SVY 478
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17365 | PF06580 | 33 | 0.002
| Sensor histidine kinase |
| >PF06580#Sensor histidine kinase
Length = 349
Score = 32.5 bits (74), Expect = 0.002
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 19/95 (20%)
Query: 256 LVMNSIEAGAT------EIRIQAAEEGEQLLLNVIDNGKGLDANMQQKVLEPFFTTKSQG 309
LV N I+ G +I ++ ++ + L V + G N + +
Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------------ES 310
Query: 310 TGLGLA-VVQSVVRNHGGQLQLSCLPNKGCTVSLV 343
TG GL V + + +G + Q+ +G ++V
Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17370 | HTHFIS | 435 | e-151
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 435 bits (1119), Expect = e-151
Identities = 170/481 (35%), Positives = 263/481 (54%), Gaps = 21/481 (4%)
Query: 7 RILLIGPPSERLNRLCCIFDFLGEQIVQI-DAEKLSASLQDTRFRALVILTDVMDAEM-- 63
IL+ + L G + +A L + +++TDV+ +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD--LVVTDVVMPDENA 62
Query: 64 ---LKNIAGQHPWQPMLLL---GNVDDLQVSNILG---NIEEPLTYPQLTELLHFCQVFG 114
L I P P+L++ ++ G + +P +L ++
Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
Query: 115 QVKRPQVPTSANQTKLFRSLVGRSDGIANVRHLINQVATSEATVLVLGQSGTGKEVVARN 174
+ + ++ + LVGRS + + ++ ++ ++ T+++ G+SGTGKE+VAR
Sbjct: 123 KRRPSKLEDDSQD---GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179
Query: 175 IHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDE 234
+H +RR+GPF+ +N AIP +L+ESELFGHEKG+FTGA + GRFE AEGGTLFLDE
Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239
Query: 235 IGDMPLQMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISVNEFREDLYYR 294
IGDMP+ Q +LLRVLQ+ + VGG I +DVR+VAAT++DL+ I+ FREDLYYR
Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299
Query: 295 LNVFPIEMPALCDRKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELS 354
LNV P+ +P L DR +D+P L++ V + EG RF Q A+E +K H W GNVREL
Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359
Query: 355 NLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFSDEEPVEIPE 414
NLV RLT LYP ++ + + R ++P+ +E + + +++ EE +
Sbjct: 360 NLVRRLTALYPQDVITREIIENELRS-EIPDSPIEKAAARSGSLSISQAV--EENMRQYF 416
Query: 415 TRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGM 474
F LPP G+ +LAE+E +I AL +AA++LG+ R TL +K+R+ G+
Sbjct: 417 ASFGDALPPSGL-YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
Query: 475 T 475
+
Sbjct: 476 S 476
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17395 | FLAGELLIN | 209 | 4e-64
| Flagellin signature. |
| >FLAGELLIN#Flagellin signature.
Length = 507
Score = 209 bits (534), Expect = 4e-64
Identities = 158/508 (31%), Positives = 236/508 (46%), Gaps = 29/508 (5%)
Query: 2 AISVNTNVTSMKAQNQLNGANSKLSTSMERLSSGMRINSAKDDAAGLQISNRFTSQINGI 61
A +NTN S+ QN LN + S LS+++ERLSSG+RINSAKDDAAG I+NRFTS I G+
Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60
Query: 62 GVAMRNANDGISIAQTAEGAMSESTNILQRMRDLSLQSANGSNSADDRASMQKEVIALQS 121
A RNANDGISIAQT EGA++E N LQR+R+LS+Q+ NG+NS D S+Q E+
Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120
Query: 122 ELTRISDTTSFGGQKLLNGSFGTQSFQVGAQANETIDVSLKSVGAADIGNYKAKALGTAA 181
E+ R+S+ T F G K+L+ QVGA ETI + L+ + +G G
Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179
Query: 182 GDYGNGFSNTADNGVAGGTMILTKGSKSTTVTALAGDTALETASRINKAGTSVKATAQTV 241
G+ ++ N T + V + A T + +K + T
Sbjct: 180 ATVGD-LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238
Query: 242 VQADVTTAFATGTLTMNVNDGTTTSALDLSGVSDNEQLTKLINEFSGESGVSAKLEDGKV 301
A+ TA T + A+ + E T + +
Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298
Query: 302 TITSSTGKDISFA---------------------------GGATGTGGLSVSNMSSGVLT 334
T+ G+ ++ G + + +
Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL 358
Query: 335 GTDTIVGGTAKVVTAAGSVSLSSSSDFTLGGTGAGELSTDTGGNFTGVNLVDISTAAGAQ 394
+ V G +K+ + +++ D + G T +N +
Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418
Query: 395 AALATIDGAISGIDSSRADLGAVQNRMNFTISNLNNIQSNVTDARSRIQDVDFASETAQL 454
LA+ID A+S +D+ R+ LGA+QNR + I+NL N +N+ ARSRI+D D+A+E + +
Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNM 478
Query: 455 TKQQILSQTSSAMLAQANQIPQTALSLL 482
+K QIL Q +++LAQANQ+PQ LSLL
Sbjct: 479 SKAQILQQAGTSVLAQANQVPQNVLSLL 506
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17400 | FLAGELLIN | 214 | 1e-65
| Flagellin signature. |
| >FLAGELLIN#Flagellin signature.
Length = 507
Score = 214 bits (545), Expect = 1e-65
Identities = 154/508 (30%), Positives = 229/508 (45%), Gaps = 29/508 (5%)
Query: 2 AISVNTNVTSMKAQNQLNGANSRLSTSMERLSSGMRINSAKDDAAGLQISNRMSSQINGI 61
A +NTN S+ QN LN + S LS+++ERLSSG+RINSAKDDAAG I+NR +S I G+
Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60
Query: 62 GVAMRNANDGISIAQTAEGAMQESTNILQRMRDLSLQSANGSNSGDDRAAMQKELSALQS 121
A RNANDGISIAQT EGA+ E N LQR+R+LS+Q+ NG+NS D ++Q E+
Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120
Query: 122 ELTRISDTTSFGGQKLLDGSYGTQSFQVGAQANETIDVSLKSVGAADIGNYKAKALGTAA 181
E+ R+S+ T F G K+L QVGA ETI + L+ + +G G
Sbjct: 121 EIDRVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179
Query: 182 GDYGNGFSNTADNGVAGGTMILTKGSKSTTVTALAGDTALETASRINKAGTSVKATAQTV 241
G+ ++ N T + V + A T + +K + T
Sbjct: 180 ATVGD-LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238
Query: 242 VQADVTTAFATGTLTMNVNDGTTTSALDLSGVSDNEQLTKLINEFSGESGVSAKLEDGKV 301
A+ TA T + A+ + E T + +
Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298
Query: 302 TITSSTGKDISFA---------------------------GGATGTGGLSVSNMSSGVLT 334
T+ G+ ++ G + + +
Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL 358
Query: 335 GTDTIVGGTAKVVTAAGSVSLSSSSDFTLGGTGAGELSTDTGGNFTGVNLVDISTAAGAQ 394
+ V G +K+ + +++ D + G T +N +
Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418
Query: 395 AAIDIIDGAISGIDGSRSDLGAVQNRMSFTISNLSNIQSNVTDARSRIQDVDFASETAQL 454
+ ID A+S +D RS LGA+QNR I+NL N +N+ ARSRI+D D+A+E + +
Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNM 478
Query: 455 TKQQILSQTSSAMLAQANQIPQTALSLL 482
+K QIL Q +++LAQANQ+PQ LSLL
Sbjct: 479 SKAQILQQAGTSVLAQANQVPQNVLSLL 506
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17405 | FLAGELLIN | 48 | 4e-08
| Flagellin signature. |
| >FLAGELLIN#Flagellin signature.
Length = 507
Score = 48.1 bits (114), Expect = 4e-08
Identities = 23/122 (18%), Positives = 66/122 (54%)
Query: 20 QTATSKILDQLSSGKKVNTAGDDPVASQGIDNLNQKNALVDQFIKNIDYATNHLQQTESQ 79
Q++ S +++LSSG ++N+A DD + + Q +N + + Q TE
Sbjct: 21 QSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGA 80
Query: 80 LGQADTLVSSMKDMMLRGSNGSMTEAERQTIADDMRKSLDQLLTIANTKDESGNYLFAGN 139
L + + + ++++ ++ +NG+ ++++ ++I D++++ L+++ ++N +G + + +
Sbjct: 81 LNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQD 140
Query: 140 KT 141
Sbjct: 141 NQ 142
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17410 | FLGHOOKAP1 | 215 | 2e-64
| Flagellar hook-associated protein signature. |
| >FLGHOOKAP1#Flagellar hook-associated protein signature.
Length = 546
Score = 215 bits (549), Expect = 2e-64
Identities = 124/455 (27%), Positives = 194/455 (42%), Gaps = 19/455 (4%)
Query: 4 DLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRLGSSFYGTGTYVND 63
L+N A +G+ A+Q+ L SNNI++ N AGY RQ + S + G G YV+
Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61
Query: 64 VKRIYNDYAARELRIGQTTLSAAEASYGKLSELDQLFSQIGKVVPQSLNDLFSGLNSVAD 123
V+R Y+ + +LR QT S A Y ++S++D + S + + D F+ L ++
Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 121
Query: 124 LPADLGIRSSTLTNAQQVASSLNQMQSYLNGQLDQTNDQITGMTKRINEIGTELANLNLE 183
D R + + ++ + + YL Q Q N I +IN ++A+LN +
Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181
Query: 184 LMKSPNQDA-----QLLDKQDALVQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAM 238
+ + A LLD++D LV EL+Q V V Q+ G +I + LV G A
Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241
Query: 239 SMGTQAGNPFPKELQLNSSIGSQSVTVDPSKL--GGQLGAMFDYRDQTLIPAGHELDQLA 296
+ + P + G+ P KL G LG + +R Q L + L QLA
Sbjct: 242 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 301
Query: 297 LGVADNFNKMQAQGIDLNGQVGANIFKDINDPMMSLGRVAGFSDNAGNATLGVTIDDTSL 356
L A+ FN G D NG G + F + V + N G+ +G T+ D S
Sbjct: 302 LAFAEAFNTQHKAGFDANGDAGEDFFA------IGKPAVLQNTKNKGDVAIGATVTDASA 355
Query: 357 LTGGAYELSF--TAPATYELRDTETGAITPLTLTGSTLSGGAGFSIDIKAGAMASGDRFA 414
+ Y++SF L T +TP G G A D F
Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFT----GTPAVNDSFT 411
Query: 415 IRPTAGASNGIEVVMKDPKGIAAASPKITADAANS 449
++P + A ++V++ D IA AS + D+ N
Sbjct: 412 LKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNR 446
Score = 88.1 bits (218), Expect = 2e-20
Identities = 38/104 (36%), Positives = 56/104 (53%)
Query: 535 AEGDNSNAVAMAKLSESKVMNNGKSTLADVFENTKLDIGSKTKAAEVRTGSAEAVYQQAY 594
+ DN N A+ L + G + D + + DIG+KT + + + V Q
Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500
Query: 595 ARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLS 638
+ +S SGVNLDEE NL RFQQ Y A+A+++ TA IFD L++
Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17415 | FLGFLGJ | 155 | 1e-46
| Flagellar protein FlgJ signature. |
| >FLGFLGJ#Flagellar protein FlgJ signature.
Length = 313
Score = 155 bits (393), Expect = 1e-46
Identities = 66/151 (43%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 219 GSREEFLATLYPHAEKAAKALGTQPEVLLAQSALETGWGQKIVRGNNGAPSHNLFNIKAD 278
G + FLA L A+ A++ G ++LAQ+ALE+GWGQ+ +R NG PS+NLF +KA
Sbjct: 147 GDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKAS 206
Query: 279 RRWQGDKANVSTLEFEHGVAVQQKADFRVYSDFEHSFNDFVSFIANGDRYQDAKKVAASP 338
W+G ++T E+E+G A + KA FRVYS + + +D+V + RY A AAS
Sbjct: 207 GNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYA-AVTTAASA 265
Query: 339 TQFIRALQDAGYATDPRYAEKVIKVMQSISE 369
Q +ALQDAGYATDP YA K+ ++Q +
Sbjct: 266 EQGAQALQDAGYATDPHYARKLTNMIQQMKS 296
Score = 88.2 bits (218), Expect = 1e-21
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Query: 12 DLGGLDSLRAQAQKDEKGALKKVAQQFEGIFVQMLMKSMRDANAVFQSDSPLNSQYTQFY 71
D L+ L+A+A +D ++ VA+Q EG+FVQM++KSMRDA D +S++T+ Y
Sbjct: 14 DAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALP---KDGLFSSEHTRLY 70
Query: 72 EQMRDQQLSVDLSDKGVLGLADMMVQQLSPE 102
M DQQ++ ++ LGLA+MMV+Q++PE
Sbjct: 71 TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPE 101
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17420 | FLGPRINGFLGI | 373 | e-131
| Flagellar P-ring protein signature. |
| >FLGPRINGFLGI#Flagellar P-ring protein signature.
Length = 373
Score = 373 bits (958), Expect = e-131
Identities = 159/367 (43%), Positives = 221/367 (60%), Gaps = 14/367 (3%)
Query: 5 LMLTIAVLVFSLPSQAE--RIKDIANVQGVRSNQLIGYGLVVGLPGTGEKTS---YTEQT 59
L+ + + + P+QA+ RIKDIA++Q R NQLIGYGLVVGL GTG+ +TEQ+
Sbjct: 11 LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQS 70
Query: 60 FMTMLKNFGINLPDNVKPKIKNVAVVAVHADMPAFIKPGQDLDVTVSSLGEAKSLRGGTL 119
ML+N GI + KN+A V V A++P F PG +DVTVSSLG+A SLRGG L
Sbjct: 71 MRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNL 129
Query: 120 LQTFLKGVDGNVYAIAQGSLVVSGFSADGLDGSKVIQNTPTVGRIPNGAIVERSVASPFS 179
+ T L G DG +YA+AQG+L+V+GFSA G D + + Q T R+PNGAI+ER + S F
Sbjct: 130 IMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFK 188
Query: 180 TGDYLTFNLRRSDFSTAQRMADAINDL----LGPDMARPLDATSVQVTAPRDVSQRVSFL 235
L LR DFSTA R+AD +N G +A P D+ + V PR V+ +
Sbjct: 189 DSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLM 247
Query: 236 ATLENLDVVPAEESAKVIVNSRTGTIVVGQNVRLLPAAITHGGMTVTIAEATQVSQPNAL 295
A +ENL V + AKV++N RTGTIV+G +VR+ A+++G +TV + E+ QV QP
Sbjct: 248 AEIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPF 306
Query: 296 ANGQTVVTANTTIGVEESDRRMFMFNPGTTLDELVRAVNLVGAAPSDVLAILEALKVAGA 355
+ GQT V T I + ++ + G L LV +N +G ++AIL+ +K AGA
Sbjct: 307 SRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKSAGA 365
Query: 356 LHGELII 362
L EL++
Sbjct: 366 LQAELVL 372
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17425 | FLGLRINGFLGH | 142 | 3e-44
| Flagellar L-ring protein signature. |
| >FLGLRINGFLGH#Flagellar L-ring protein signature.
Length = 232
Score = 142 bits (358), Expect = 3e-44
Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 18/227 (7%)
Query: 4 YLVVAVALL-LAACSSTQKKPLADDPFYAPVYPEAPPTKIAATGSIYQDSQ-----ASSL 57
Y + ++ +L L C+ PL A P P A GSI+Q +Q L
Sbjct: 9 YAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTP---VANGSIFQSAQPINYGYQPL 65
Query: 58 YSDIRAHKVGDIITIVLKESTQAKKSAGNQIKKGSDM-----TLDPIFAGGSNVSIGGVP 112
+ D R +GD +TIVL+E+ A KS+ + T+ G G
Sbjct: 66 FEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGL----FGNAR 121
Query: 113 IDLRYKDSMNTKRESDADQSNSLDGSISANVMQVLNNGSLVIRGEKWISINNGDEFIRVT 172
D+ + A+ SN+ G+++ V QVL NG+L + GEK I+IN G EFIR +
Sbjct: 122 ADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFS 181
Query: 173 GLVRSQDIKPDNTIDSTRMANARIQYSGTGTFADAQKVGWLSQFFMS 219
G+V + I NT+ ST++A+ARI+Y G G +AQ +GWL +FF++
Sbjct: 182 GVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLN 228
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17430 | FLGHOOKAP1 | 43 | 7e-07
| Flagellar hook-associated protein signature. |
| >FLGHOOKAP1#Flagellar hook-associated protein signature.
Length = 546
Score = 43.0 bits (101), Expect = 7e-07
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 4/119 (3%)
Query: 145 DNATSITVSAEGEVSVKTPGTAENQVVGQLTMTDFINPSGLDPMGQNLYTETG---ASGT 201
+ I +++E + + + Q + +L ++ G A+
Sbjct: 427 TDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLK 486
Query: 202 PIQGTASLDGMGAIRQGALETSNVNVTEELVNLIESQRIYEMNSKVISAVDQMLSYVTQ 260
T + + S VN+ EE NL Q+ Y N++V+ + + +
Sbjct: 487 TSSATQGNV-VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
Score = 35.7 bits (82), Expect = 2e-04
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 5 LWISKTGLDAQQTDIAVISNNVANASTVGYKKSRAV 40
+ + +GL+A Q + SNN+++ + GY + +
Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI 39
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17440 | FLGHOOKAP1 | 40 | 2e-05
| Flagellar hook-associated protein signature. |
| >FLGHOOKAP1#Flagellar hook-associated protein signature.
Length = 546
Score = 39.9 bits (93), Expect = 2e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 2 SFNIALSGISAAQKDLNTTANNIANANTIGFKESR 36
N A+SG++AAQ LNT +NNI++ N G+
Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
Score = 37.6 bits (87), Expect = 9e-05
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 405 SISSSALEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTVLQIR 453
+S+ S ++L E +L Q+ + AN++ L+ N + ++ IR
Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17450 | FLGHOOKAP1 | 33 | 3e-04
| Flagellar hook-associated protein signature. |
| >FLGHOOKAP1#Flagellar hook-associated protein signature.
Length = 546
Score = 33.0 bits (75), Expect = 3e-04
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLGM 136
VN+ EE ++ + Y N QV + A ++ + +
Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
Score = 29.9 bits (67), Expect = 0.003
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 5 SIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRSRHPIFEAEMAKAQSQQQASQ 64
S+ + A SG++A LNT ++NI++ + Y + I + +
Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYN------VAGYTRQTTIMAQANSTLGAGGWVGN 55
Query: 65 GVAVKGI 71
GV V G+
Sbjct: 56 GVYVSGV 62
|
| ORFs having significant similarity with Known Virulence factors |
| LocusTag | Hits | Score | E-value | Comments |
| AYJ58_RS17465 | HTHFIS | 61 | 1e-12
| FIS bacterial regulatory protein HTH signature. |
| >HTHFIS#FIS bacterial regulatory protein HTH signature.
Length = 484
Score = 61.4 bits (149), Expect = 1e-12
Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 180 HIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKLKEIAKEMDNVADEIPLIISDI 239
I+V DD A R + ++L + + + A + L+++D+
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---------AGDGDLVVTDV 55
Query: 240 EMPEMDGYTLTAEIRDDPKLKHIKVVLHTSLSGVFNQAMVQKVGANDFIAK-FNPDELAA 298
MP+ + + L I+ + V++ ++ + + GA D++ K F+ EL
Sbjct: 56 VMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113
Query: 299 AVNKHLSL 306
+ + L+
Sbjct: 114 IIGRALAE 121
|