>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 25.0 bits (54), Expect = 0.043 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 4 ELFETEKAPQKNAKNAPKKNFEEHVHSLEQAIDRLNDPNLSLKDGMDLYKMAMQELFLAQ 63 E +T++ P+ ++ +PK+ E V + R NDP +++K+ A+ Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEP-ARENDPTVNIKEPQSQTNTTADTEQPAK 1173 Query: 64 KLLENAYSEYEKLQTTDK 81 + N + T + Sbjct: 1174 ETSSNVEQPVTESTTVNT 1191
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 63/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATTSFT 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.004 Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 12/97 (12%) Query: 52 QDSFSDIKFSTPNQLEQSLNALKNKLAAFFSKHPDKHNGIEFNEIAKTQIEALYLP--QS 109 D + ++ L+ AL L P + F+E+ + + P ++ Sbjct: 434 DDEVARLRLRGRWLLKPRRAALIEAL----RSAPALAGCVAFDELREQPVAVRAFPWRKA 489 Query: 110 SDDFDDFRKDLEDSVKSFIRAKKNRYGFPR--IFDVA 144 +D + ++ G + A Sbjct: 490 PGPLED---ADVLRLADYVE-TTYGTGEASAQTTEQA 522
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.0 bits (96), Expect = 8e-06 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%) Query: 134 LEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD------IPI---AISDATSLTEAG 184 L + + +++ G +G+GK L+A+ L + + I AI L E+ Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLIESE 207 Query: 185 YVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS--------RLSENRSITR 232 G + T S ++A+ G +F+DEI + R+ + T Sbjct: 208 LFGH-EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTT 262
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 474 bits (1221), Expect = e-171 Identities = 179/347 (51%), Positives = 248/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKTW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++ H PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V ++PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.5 bits (68), Expect = 0.049 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%) Query: 121 QEESQLRERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S+ + + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.8 bits (95), Expect = 6e-06 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 9/198 (4%) Query: 4 KFSNDTQENPKDAQNFKNFQEKHNKPTENTELVEKNKALATEKENLTKDKENLTKDKAEL 63 + + + + + + + E K +L K E Sbjct: 89 ELTEELSNAKEKLRKNDKSLSEKASKIQELE---------ARKADLEKALEGAMNFSTAD 139 Query: 64 QKQVKDLENKKAELLTENQNLAKQKTELTSKNAELQKQVKALEQSQQVLQNEKAELTNEN 123 ++K LE +KA L +L K + + ++K LE + L+ +AEL Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 124 TKLKNEKTELTEKNKALTAEKDKLERESKNLTKDKTDLTSKNAELQKQVNELEQSQQVLK 183 N T + K K L AEK L +L K + + ++ LE + L+ Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 184 NEKAELERRHAPYQKLEK 201 +AELE+ Sbjct: 260 ARQAELEKALEGAMNFST 277 Score = 40.4 bits (94), Expect = 8e-06 Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 7/194 (3%) Query: 8 DTQENPKDAQNFKNFQEKHNKPTENTELVEKNKALATEKENLTKDKENLTKDKAELQKQV 67 + +A+ K + + + A + + + L +K L +AEL+K + Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 68 KDLENKKAELLTENQNLAKQKTELTSKNAELQKQVKALEQSQQVLQNEKAELTNENTKLK 127 + N + + L +K L ++ A+L+K ++ + L E L+ Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 128 NEKTELTEKNKALTAEKDKLERESKNLTKDKTDLTSKNAELQKQVNELEQSQQVLKNE-- 185 + EL + + + K L +K L ++ A+L+ Q L ++Q L+ + Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 186 -----KAELERRHA 194 K +LE H Sbjct: 320 ASREAKKQLEAEHQ 333 Score = 35.8 bits (82), Expect = 2e-04 Identities = 34/157 (21%), Positives = 58/157 (36%) Query: 30 TENTELVEKNKALATEKENLTKDKENLTKDKAELQKQVKDLENKKAELLTENQNLAKQKT 89 E L + L E + L+ + L +KA+L + T Sbjct: 183 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 242 Query: 90 ELTSKNAELQKQVKALEQSQQVLQNEKAELTNENTKLKNEKTELTEKNKALTAEKDKLER 149 ++K L+ + ALE Q L+ N +T + L + AL AEK LE Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 150 ESKNLTKDKTDLTSKNAELQKQVNELEQSQQVLKNEK 186 +S+ L ++ L ++ +LE Q L+ + Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Score = 34.3 bits (78), Expect = 6e-04 Identities = 35/153 (22%), Positives = 72/153 (47%) Query: 31 ENTELVEKNKALATEKENLTKDKENLTKDKAELQKQVKDLENKKAELLTENQNLAKQKTE 90 + + A + + + L +K L +AEL+K ++ N + + L +K Sbjct: 233 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 292 Query: 91 LTSKNAELQKQVKALEQSQQVLQNEKAELTNENTKLKNEKTELTEKNKALTAEKDKLERE 150 L ++ A+L+ Q + L ++Q L+ + +L+ E +L E+NK A + L R+ Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 151 SKNLTKDKTDLTSKNAELQKQVNELEQSQQVLK 183 + K L +++ +L++Q E S+Q L+ Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Score = 33.5 bits (76), Expect = 0.001 Identities = 34/178 (19%), Positives = 62/178 (34%) Query: 14 KDAQNFKNFQEKHNKPTENTELVEKNKALATEKENLTKDKENLTKDKAELQKQVKDLENK 73 + + + E L + L E + L+ + LE + Sbjct: 202 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 261 Query: 74 KAELLTENQNLAKQKTELTSKNAELQKQVKALEQSQQVLQNEKAELTNENTKLKNEKTEL 133 +AEL + T ++K L+ + ALE + L+++ L L+ + Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 134 TEKNKALTAEKDKLERESKNLTKDKTDLTSKNAELQKQVNELEQSQQVLKNEKAELER 191 E K L AE KLE ++K + L ++ +LE Q L+ + E Sbjct: 322 REAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 7e-05 Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 19/155 (12%) Query: 5 KERLKRENTELTHKNASLTEKTADLKTENDKLNHQVIALNNEQGSLKQERSQLQGACGFL 64 KE+ + K +L +K A+ T + ++ N K Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLT----VLARINRYENLSRVEKSRLDDFS------ 241 Query: 65 EETCANLEKENQHLTDKLKKLESTQKNLENTNNQLRQSLENSNAELAQAKEKIAIEKTEL 124 +L + + + E+ N + LE +E+ AKE+ + Sbjct: 242 -----SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 125 EREIVRLKSLEGMEAKSDLDLHNRRLASASQDLKR 159 + EI L L + ++ L LA + + Sbjct: 297 KNEI--LDKLR--QTTDNIGLLTLELAKNEERQQA 327 Score = 28.3 bits (63), Expect = 0.022 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 8/108 (7%) Query: 85 LESTQKNLENTNNQLRQSLENSNAELAQAKEKIAIEKTELEREIVRLKSLEGMEAKSDLD 144 ++ +N Q +L+ AE +I + E RL + K + Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 145 LHN-----RRLASASQDL---KRQNRKLEEENIALKERVDGLKEQLSK 184 H + A +L K Q ++E E ++ KE + + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.7 bits (66), Expect = 0.038 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 27/153 (17%) Query: 400 MEKALNTLGQEISSMLKASLGFANA------LNHESKDLKTCVDNLTKTAHKQERSLKNT 453 K L ++ S+ A G+A A E+ + K +D T K + + Sbjct: 160 ATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVK---AGTDA 216 Query: 454 TQSLEEITNIIT----TIDSKSQEMISQGED--------IKSVVDMIRDIADQT------ 495 E+ NI+T T ++ SQ +SQGE + ++ M +I + Sbjct: 217 KAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQ 276 Query: 496 NLLALNAAIEAARAGEHGRGFAVVADEVRKLAE 528 N LAL A++ R E + A +E RK E Sbjct: 277 NDLALFNALQEGRQAEMEKKSAEFQEETRKAEE 309
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 7e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNENLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.8 bits (72), Expect = 0.005 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKIPFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + + + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 68.9 bits (168), Expect = 2e-14 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 22/259 (8%) Query: 148 EALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKEKQEVAESPQD 207 E +A+ + P + ET E +++E K E E + +EVA+ + Sbjct: 1015 EEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKS 1074 Query: 208 EEKPKDDETQGSVETPKDEEVSKELETQEQVETPKEETQEQEPIKEETQEIKEEKQEKTQ 267 K TQ + + S+ ETQ +++E K ET++ +E + +Q Sbjct: 1075 NVK---ANTQTN---EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 268 DSPSAQELEAMQELVKEIQENFNDQENKKETQENQENTETPQDIETQELEIPKEEETQEV 327 SP ++ E +Q + +EN K+ + +T Q + + + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 328 AEKTQAQGLEKEEIAETPQESEVQESQDETPQELEAQDETLQENETPKDENMQESAQNLQ 387 + + E P+ + +Q E PK+ + + Sbjct: 1189 VNTGNS-------VVENPENTTPATTQPTVNSESS---------NKPKNRHRRSVRSVPH 1232 Query: 388 EKETQELETPQAQDETLQE 406 E + L + Sbjct: 1233 NVEPATTSSNDRSTVALCD 1251 Score = 56.2 bits (135), Expect = 2e-10 Identities = 58/298 (19%), Positives = 115/298 (38%), Gaps = 13/298 (4%) Query: 195 EKEKQEVAESPQDEEKPKDDETQGSVETPKDEEVSKELETQEQVETPKEETQEQEPIKEE 254 E EK+ + P + + +EE+++ E P ++ E + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 255 TQEIKEEKQEKTQDS--PSAQELEAMQELVKEIQENFNDQENKK-ETQENQENTETPQDI 311 +++ + ++ QD+ +AQ E +E ++ N Q N+ ++ + T+T + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVK--ANTQTNEVAQSGSETKETQTTETK 1101 Query: 312 ETQELEIPKEEETQEVAEKTQAQGLEKEEIAETPQESEVQESQDETPQELEAQDETLQEN 371 ET +E KEE+ + EKTQ +++ ++SE + Q E +E D T+ Sbjct: 1102 ETATVE--KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE---NDPTVNIK 1156 Query: 372 ETPKDENMQESAQNLQEKETQELETPQAQDETLQEDHYESIEDIPEPVMAKAMGEELPFL 431 E N + ++ + +E P + T + S+ + PE + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTT--VNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 432 NENDTETPKESVIKNPQEKEESDKTSSPLELRLNLQDLLKSLNQESFKSLLENKTLSI 489 + N + +++ E TSS + L DL S N + S K + Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT-STNTNAVLSDARAKAQFV 1271 Score = 48.5 bits (115), Expect = 5e-08 Identities = 33/242 (13%), Positives = 79/242 (32%), Gaps = 11/242 (4%) Query: 142 ESLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKEKQEV 201 E+ +AKE +N + T + + +E Q KE +EE + E ++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 202 AESPQ--DEEKPKDDETQGSVETPKDEEVSKELETQEQVETPKEETQEQEPIKEETQEIK 259 E P+ + PK E + + E + +E Q Q +T++ Sbjct: 1120 QEVPKVTSQVSPKQ-------EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 260 EEKQEKTQDSPSAQELEAMQELVKEIQENFNDQENKKETQENQENTETPQDIETQELEIP 319 +E + + V E E N + N E++ P++ + + Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPE--NTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 320 KEEETQEVAEKTQAQGLEKEEIAETPQESEVQESQDETPQELEAQDETLQENETPKDENM 379 + ++ T + + +++ + + + ++ + + N Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNN 1290 Query: 380 QE 381 + Sbjct: 1291 EG 1292 Score = 40.8 bits (95), Expect = 1e-05 Identities = 42/282 (14%), Positives = 78/282 (27%), Gaps = 20/282 (7%) Query: 111 QKKLGSNISELEPSQNLDPTQEILETNWDELESLGDLEALAKEEPNNEEQLLPTLNEQEG 170 + + E N+ + E E+ KE E++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE---------- 1109 Query: 171 ETPKEEAQEEVKKEEVKEMQEEVKEKEKQEVAESPQDEEKPKDDETQGSVETPKDEEVSK 230 E K E ++ +EV ++ +V K++Q PQ E ++D T +E Sbjct: 1110 EKAKVETEK---TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI------KEPQS 1160 Query: 231 ELETQEQVETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENFN 290 + T E P +ET + T+ ++P Q V N Sbjct: 1161 QTNTTADTEQPAKETS-SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 291 DQENKKETQENQENTETPQDIETQELEIPKEEETQEVAEKTQAQGLEKEEIAETPQESEV 350 +++ + N E + + T + K + V Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279 Query: 351 QESQDETPQELEAQDETLQENETPKDENMQESAQNLQEKETQ 392 + + E Q N + + K TQ Sbjct: 1280 SQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQ 1321
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 195 bits (496), Expect = 1e-64 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.006 Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 30 VVALLGESGAGKSTILRILAGLEAVSNGYIEA 61 V L G G GKST++ L GL+ S+ + + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 197 bits (503), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLEKERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LE++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 246 bits (628), Expect = 9e-84 Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 38/266 (14%) Query: 18 KVLIALGLSGALVGCAIKSVAEVKPQNQQEKPIQVNEKIQTTQKVTPFHFNYSLHVAQAA 77 K L+ + LVGC+ I+T + ++ + A Sbjct: 14 KCLLGASVVALLVGCS-------------------PHIIETNEVALKLNY-HPASEKVQA 53 Query: 78 QNYRLIGILAPRIQMSDNL-KPYSALFQDALRRQIQAIFEKRGYQTLFF--KDESALTPQ 134 + + I +L P Q SDN+ K Y F++ +++ I + +GY+ + D+ + Sbjct: 54 LDEK-ILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFA 112 Query: 135 DKRKLFAVLDVKGWVGVLEDLKLLLKDPNNANALTAQ----------SSGSVWFSFYEPE 184 K++ + + + G + + D K ++ + L + +G V + EP Sbjct: 113 QKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPM 172 Query: 185 SYRVIYDFKVGLG--DFQAIVHAYNNNHSLGFNLKNNLFTGLENNKQDAIHQILNKIYAS 242 S + F + L D Q + S L + + G +N DAI LNKI+A+ Sbjct: 173 SGESLDSFTMDLSELDIQEKFLKTTH-SSHSGGLVSTMVKGTDN-SNDAIKSALNKIFAN 230 Query: 243 IMKKAVTELTEKNISQYKEAIDKMKG 268 IM++ +LT+KN+ Y++ ++KG Sbjct: 231 IMQEIDKKLTQKNLESYQKDAKELKG 256
>PF03944#delta endotoxin Length = 633 Score = 30.8 bits (69), Expect = 0.008 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQKFSSQFLDLVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.012 Identities = 9/30 (30%), Positives = 18/30 (60%) Query: 104 IDLAKQNERKKDLEKEKKELLNKTEKQKIK 133 ++ ++ + D+++ K NKTEK+K K Sbjct: 31 VNAMNEHYTESDIKRNHKTEKNKTEKEKFK 60
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.020 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 21/117 (17%) Query: 242 SVTQKPNIIAPYSLYRLKEANNANEAQPSPY------ATQTAPENSKEKLIEELIANSQL 295 ++ P R + A++ Q + S + EE+ Sbjct: 3 TLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTF---- 58 Query: 296 IANEEEREKKLLAEKEKQ--------ETELAKY--KLKDLENQKKLKALEAELKKKN 342 E +E L K E ++ +Y K+ +LE ++ + L + L Sbjct: 59 -VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSP 114
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 0.002 Identities = 84/472 (17%), Positives = 155/472 (32%), Gaps = 13/472 (2%) Query: 505 RARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTNEERKKCLKDLPKDLQSDILAKES 564 + + E K E + K LKD +L ++ + Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEEL---SN 96 Query: 565 LKAYKDCASQAKTEDEKQECEKLLTPEAKRLLEEEAKESVKAYLDCVSQAKNEAEKKECE 624 K ++ +E + E E A A + + E Sbjct: 97 AKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAAR 156 Query: 625 KLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEDEKKECEKLLTPEAKKKLEQQVLDCLKNA 684 K +A + + A + + E E + +A + Sbjct: 157 KADLEKALEGAMNFSTADSAKIK---TLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 685 KTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEAKKLLEE 744 KT E K L DL+K + + K + + E +K LE Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ--AELEKALEG 271 Query: 745 AKESLKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEESKKSVKAYLDCVSKAKNEAER- 803 A A + EK E EK ++L +++S++ LD +AK + E Sbjct: 272 AMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAE 331 Query: 804 ----KECEKLLTPEAKKLLEEAKESVKAYKDCVSRAKNEAERKECEKLLTPEAKKLLEES 859 +E K+ + L + S +A K + + E+ + + ++ L+ S Sbjct: 332 HQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 391 Query: 860 KKSVKAYLDCVSKAKNEAERKECEKLLTPEAKKLLEEAKESVKAYKDCVSRAKNEAERKE 919 +++ K + +A ++ E E+KKL E+ K ++A + ++A E K+ Sbjct: 392 REAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQ 451 Query: 920 CEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVR 971 E+L A K ++Q D K K + + K Q K KE+ R Sbjct: 452 AEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKR 503 Score = 33.5 bits (76), Expect = 0.008 Identities = 70/407 (17%), Positives = 138/407 (33%), Gaps = 16/407 (3%) Query: 411 PEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAK 470 + + L+ E + + NAK + KN+ I+ L+ + D K + Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 471 TDEERKECLKNIPQDLQKEL-LADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLEQ 529 + L+ E + + A N + K LE Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 530 QVLDCLKNAKTNEERKKCLKDLPKDLQSDILAKESLKAYKDCASQAKTEDEKQECEKLLT 589 + + K + K L+++ A + KA + A + + K+ T Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 590 PEAKRLLEEEAKESVKAYLDCVSQAKNEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCV 649 EA++ E + ++ +A A + + + A ++ KA L+ Sbjct: 251 LEAEKAALEARQAELE-------KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ 303 Query: 650 SQAKTEDEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKECLKDLPKDLQKKVLAKE 709 SQ + + L KK + L+ E + L +DL AK+ Sbjct: 304 SQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS--RQSLRRDLDASREAKK 361 Query: 710 SVRVYLDCVSKAKNEAERKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKQECE 769 + + + +E ++ L+ ++E+ K + + A ++ E Sbjct: 362 QLEAEHQKLEEQNKISEASR------QSLRRDLDASREAKKQVEKALEEANSKLAALEKL 415 Query: 770 KLLTPEAKKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEAKK 816 E+KKL E+ K ++A L+ +KA E K+ E+L A K Sbjct: 416 NKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGK 462
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 859 bits (2220), Expect = 0.0 Identities = 514/522 (98%), Positives = 516/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKIVNCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIV CFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWNIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGW+IVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKSITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFK+ITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (299), Expect = 5e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIIMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.2 bits (62), Expect = 0.048 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARVEQI 83 A+N AL+ +Y+E + K K + D KE+ +++K L ++ EQ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKK---------ALEKEKEAKEQA 158 Query: 84 QKNIEAFEKKNNSSVQKKTAKHRGLQELNETNANPLNDNPNSNSPTETKSNKDDNFDEM 142 QK A + K +++ L+ L +NP N + N N K +++ D+M Sbjct: 159 QK---AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.1 bits (73), Expect = 0.015 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 17 EVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 69 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 70 IVLSVILF-QAYEPVLIVAIVIVLVALG 96 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>adhesinb#Adhesin B signature. Length = 310 Score = 28.7 bits (64), Expect = 0.008 Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 110 NIDFKLTEFDRDDKKYYNRIVFEFKYDLNEEDKQFKKK 147 NI +L+E D +K+ Y + + + L+ DK+ K+K Sbjct: 154 NIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEK 191
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 26.8 bits (59), Expect = 0.026 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 34 GKLIGGGVGGFVGDKIGGAIGVPGGPVGIGLGRFLG 69 G G GG D++ + GG GI G LG Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 274 bits (702), Expect = 1e-95 Identities = 114/247 (46%), Positives = 161/247 (65%), Gaps = 4/247 (1%) Query: 1 MRFFIFFMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPS 60 MR + L L A + LP + S P + + + +T L P+ Sbjct: 1 MRRLLSVAPVL---LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPA 56 Query: 61 LILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPY 120 ++L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ Sbjct: 57 ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116 Query: 121 MDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMI 180 ++KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 181 SELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLT 240 SELKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 241 ENLVASF 247 +L SF Sbjct: 237 GSLAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.012 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 475 KGENIKIALKHHLENKNAPEETREVKFPFLKPQPTTETTAETKENEKEAVGKALQTKEND 534 EN K K +N+ ET K + + A T+ NE G +TKE Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAK-EAKSNVKANTQTNEVAQSG--SETKETQ 1096 Query: 535 TKEVKEKEVQEKEIKETKEA-QPKEAP 560 T E KE EKE K E + +E P Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVP 1123 Score = 31.2 bits (70), Expect = 0.014 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 489 NKNAPEETREVKFPFLKPQPTTETTAETKENEKEA---VGKALQTKENDTKEVKEKEVQE 545 A +E K Q TETTA+ +E KEA V QT E + KE Q Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 546 KEIKETKEAQPKEA 559 E TKE E Sbjct: 1098 TE---TKETATVEK 1108 Score = 30.4 bits (68), Expect = 0.024 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 475 KGENIKIALKHHLENKNAPE--ETREVKFPFLKPQPTTETTAETKENEKEAVGKALQTKE 532 +N ++A + K + E + + Q T T E E++A + +T+E Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 533 --NDTKEVKEKEVQEKEIKETKEAQPKEAPT 561 T +V K+ Q + ++ E + PT Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Score = 29.6 bits (66), Expect = 0.050 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 15/95 (15%) Query: 506 PQPTTETTAETKENEKEAVGKALQTKENDTKEVKEK----------EVQEKEI----KET 551 P TTET AE + E + V K Q T + +E Q E+ ET Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 552 KEAQPKEAP-TALQEFMANHSELIEEIKSEFEIKS 585 KE Q E TA E E+ + ++ S Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.013 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.7 bits (227), Expect = 6e-24 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 12/235 (5%) Query: 14 KVAVITGASSGIGLECALMLLNQGYKVYALSRHATLCVALNHALC------ERVDIDVSD 67 K+A ITGA+ GIG A L +QG + A+ + + +L E DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 SNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQFCL 127 S A+ E+ I + D+L+N AG G + EE + FSVN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 128 PLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPG 187 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 188 PVKSNWEKTAFSVENFESENSLYALEMNAAKSFYSGVYQNALS-PKAVAQKIVFL 241 +++ + + ++ EN + + + ++F +G+ L+ P +A ++FL Sbjct: 189 STETDMQWSLWADENGAEQ-----VIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.5 bits (95), Expect = 1e-05 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFESGAETPSQSVQIPTTGSDGHESHIVPLSEIQTIMRER 324 + AE +K + G S G E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 97.6 bits (243), Expect = 4e-26 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 16/209 (7%) Query: 87 EADVLFQAERKIGDWIFSSAVFFFALAVIEAIIIICLLPLKEKVPYLVTFSNATQNFAIV 146 E D L AER + A ALA + + L PLK PY++T T +I Sbjct: 21 ERDKLAAAERS-KKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIA 79 Query: 147 QR--ADKSIRANQVLVRQLVASYVNNRE--NISSIKEQNEIAHETIRLQSAFEVWDFFEK 202 + D +I ++ + + +A+YV RE ++ +E + + + SA D + + Sbjct: 80 AKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSR 135 Query: 203 LVSYEH-----SIYTNVNLTRKISIINIALISKTQANIEISAQLFNKEKLESLKRYRIIM 257 ++ +I N + I ++ + A + + + + + Sbjct: 136 FYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATI 193 Query: 258 TFEFEPIEIDTKSVPLNPTGFIVTGYDVT 286 ++ + NP G+ V Y Sbjct: 194 KYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.5 bits (74), Expect = 0.030 Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 23/236 (9%) Query: 1188 FALQNNRFDSFIPSDQLKIVNAI-ANHF-GFKQEKLQRWYEKIDTANFGYSEQDYKII-- 1243 F + ++F + L++ + I + F G + ++ + S + K I Sbjct: 174 FDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVE 233 Query: 1244 --KDFMDKVGENNINLNEQTLNEYFIH-HPENILGHLSLEKTRY-SFEKNGEQIYKY--E 1297 KD ++ N N T N F+ + N++ +K +Y S K E Y + Sbjct: 234 VCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDK 293 Query: 1298 LQALEDKSLDLSQALSQAIEKLPKDVYQYHKTTLKTDALIIDANNERYQEVQKLIK---- 1353 L+ KS DL + + I + K + T K + + + ++ +L+ Sbjct: 294 SDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELLTANIY 347 Query: 1354 NLERG-ELVKWDNLYCRLEQNNKMGIFLRPTKINSKAQDSRLKAYFKIKDALNGLT 1408 L++G ++ N Y E + + I L K S+ S K Y K+K + Sbjct: 348 ALKKGLSHIELANYYS--ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAAN 401
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 38.1 bits (88), Expect = 1e-04 Identities = 48/188 (25%), Positives = 65/188 (34%), Gaps = 23/188 (12%) Query: 139 NISQTKAANDPMYANTPFSNGSDSSAYDNNPNSPNNNAINGKDGANGSNGYGVNGNDGIN 198 N +Q + PF+ G ++ N N N NA N Sbjct: 368 NSAQKTEIQPTQVIDGPFAGGKNTVV---NINRINTNADGTIRVGGFKASLTTNAAHLHI 424 Query: 199 ESSGSNLNNNAIGSGIDTDGVLG---VDGVNGSNSSSGGS-VGGYENNFT--------NH 246 G NL+N A G + + + G VDG N+ GG + G NF N Sbjct: 425 GKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNG 484 Query: 247 GSTNNNIGEYDNFNN-------NSSSGGSLGNGGLFPIPFGNGDTNNSNNPTNTTSPTNG 299 +T NN F N + G GNGG + F +G TN N T+ TN Sbjct: 485 TATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDF-SGVTNKVNINKLITASTNV 543 Query: 300 SSSNNATN 307 + N N Sbjct: 544 AVKNFNIN 551
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.012 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 564 bits (1456), Expect = 0.0 Identities = 128/610 (20%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQIYFQSDDFKLTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S + + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHHIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTAIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKQSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.0 bits (80), Expect = 4e-04 Identities = 24/139 (17%), Positives = 47/139 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ + E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQQEKAEK 165 + ++ E Q+ E+ Sbjct: 320 ASREAKKQLEAEHQKLEEQ 338
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (370), Expect = 2e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGEAKPKCVQ-----KTR----ECYRENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.6 bits (71), Expect = 0.003 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 VIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 29.9 bits (67), Expect = 0.010 Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 72 EPEVQILKDLKPDFIVVVAYGKILSKEVLAIAP 104 EP +++L ++KP F+V A + + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 34.3 bits (78), Expect = 0.002 Identities = 50/267 (18%), Positives = 100/267 (37%), Gaps = 19/267 (7%) Query: 129 LGEETKEINQLKDFREKVEKRQKKIKDEN---DIENTLIAKQKSEIKKYDEEIEKIRKKM 185 + E E + E EKR + +E +I ++ +SE+ K D EI+ + ++ Sbjct: 160 IEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRL 219 Query: 186 TSKTIQ---IALDEIGINNFYKVSKDKFKYQEDALTNLEKDFNE-------LDEAMKKFD 235 +S G N + K+K ++ + L N+ + ++ Sbjct: 220 SSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVG 279 Query: 236 GLKEMELPKDDQTIKDKLKFLFSFDIDKEAGKVSE-KIKEHISKVGREFIEKGIKLQKEM 294 K E + T + + DI + +S+ + E+ +K + Sbjct: 280 AGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNN 339 Query: 295 PDNACPFCTQEIPHEIIQEYTSYFNEEVKKFNQDSLEMSGTLKKYFNQWNIKEILQSFEK 354 N+ + Q T + E+ K Q+ + S K N+ E L +FEK Sbjct: 340 LLNSQIKDAVDATVSFYQTLTEKYGEKYSKMAQELADKS----KGKKIGNVNEALAAFEK 395 Query: 355 FEPFMKKDFSK-NKESLEKALEQIKVS 380 ++ + K FSK +++++ AL +K Sbjct: 396 YKDVLNKKFSKADRDAIFNALASVKYD 422
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYQSYFKNLEQKEEALKERAKEQQAKFDEAVKQASALALQDERAKIIEEARKNAFLEQ 110 + Q+ ++ QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170 LE + + E EL ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 31.2 bits (70), Expect = 8e-04 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 32 MEEIENSDPNQNNPFITA--AMGIGGAAISIFFPDTKPIVDGIKPL-AEKGLQEAFRKDK 88 ME I NPFI+A A+GIG + K + I PL AE Sbjct: 225 MEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKFAVIGGLGS 284 Query: 89 LAEGQKFLISSLR 101 +A +K ++ Sbjct: 285 VAGFEKNTREAVD 297
>PF05844#YopD protein Length = 295 Score = 24.6 bits (53), Expect = 0.039 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSD 74 KQK + Sbjct: 256 KQKVE 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.7 bits (61), Expect = 0.037 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 38 KKDSAPISPNVEKTEMERQNSALSPKEEANATTTATEQNPTKDTAPPLETAAQEKETKQE 97 + + + N E + + N + + N + + T ETA EKE K + Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQ--TNEVAQSGSETKETQTTETKETATVEKEEKAK 1113 Query: 98 TKQEQEKENDSKQDSVSPVQNNQKT 122 + E+ +E VSP Q +T Sbjct: 1114 VETEKTQEVPKVTSQVSPKQEQSET 1138
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 49.2 bits (117), Expect = 3e-10 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNDSLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVINTIALGYFYNKEYGKSVLD 82 LF I ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.9 bits (64), Expect = 0.034 Identities = 13/60 (21%), Positives = 21/60 (35%) Query: 155 SKSMGDLLAKAAPIERILKAYSVPVSSLENYEKIYYQNAFKPKVRIAFDDNSDAEIKNAL 214 + + D L P + +A + E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.1 bits (78), Expect = 0.001 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 KGHKVRLIDTAGIRESADEIECLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLN 318 + KV +IDT G + E+ +SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVY-----RSLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RTKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 420 bits (1082), Expect = e-144 Identities = 163/580 (28%), Positives = 282/580 (48%), Gaps = 79/580 (13%) Query: 10 RLILAIALSFLFIALYSYFFQKPNKT--TTETTKQETTNNHATTSPNAPNAQHFSVTQTI 67 R +L IAL F+ ++ + Q N +TT+ TT + P + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASG-------- 56 Query: 68 PQENLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHVSHLFNSKEN---A 123 + L ++ + + I++ G ++Q L Y PK+ + L S + A Sbjct: 57 --QGKLISVKTDVLDLTINTRGGDVEQALLP--AY--PKELNSTQPFQLLETSPQFIYQA 110 Query: 124 QTPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNDQLV--LTQDLG 179 Q+ L ++ P A+ +PL +N A G N+ V D Sbjct: 111 QSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAA 157 Query: 180 DLSIIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNGYRPVA 221 + KT Y + + + N L P + + Sbjct: 158 GNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL- 215 Query: 222 DLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDSQG 278 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 216 ----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DG 270 Query: 279 FEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVI 327 + +G N + I K++ N ++GP+ + A++P L + Sbjct: 271 TNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTV 328 Query: 328 EYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIVLYPLSYKGMVSMQKLKELAP 387 +YG + F ++ +F LL +++ FVGNWG++II++T IVR ++YPL+ SM K++ L P Sbjct: 329 DYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQP 388 Query: 388 KMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKS 447 K++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 389 KIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQ 448 Query: 448 SEWVLWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLIT 507 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + Sbjct: 449 APFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW 508 Query: 508 FPAGLVLYWTTNNILSVLQQLIINKVLENKKRAHAQNIKE 547 FP+GLVLY+ +N+++++QQ +I + LE K+ H++ K+ Sbjct: 509 FPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.049 Identities = 9/38 (23%), Positives = 15/38 (39%) Query: 121 NMNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 +N E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 0.001 Identities = 28/183 (15%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 109 NVELLKKLSPNLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 163 N+ELL ++ P+ +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 164 EIDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 220 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 221 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 278 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 279 KLP 281 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKQF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIKERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLSPEDVLNNPKFATIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 31.7 bits (72), Expect = 0.006 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 3 SLRYKLLLFVFIGVWGLLILNLFI 26 S KL+LFV + W LL L + Sbjct: 194 STPIKLVLFVALDGWTLLSKGLIL 217
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (335), Expect = 2e-40 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ K N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREIHI-VNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 25/115 (21%) Query: 155 FIEDKNYYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTN 214 I+ +N T A+I N+ MA N + N + ++EEK++ II D Sbjct: 339 LIKQENLNTTAYI-----NRVMMASN---EQIINKEKIREEKQK---------IILDQAK 381 Query: 215 AMKIIKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPEEIFNDKQFTYFKF 267 A+ + Q + ALK + R + A K+SK +MP EIF+D FTYF F Sbjct: 382 AL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.2 bits (120), Expect = 4e-09 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQ----------MPS-------VMNVGSGVDYSIEEYYEMVAQVLDYKGVFVKD 265 + I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 1e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 364 bits (935), Expect = e-127 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A++ SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.007 Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR 53 + I GESG+GK +A + R Sbjct: 163 LMITGESGTGKELVARALHDYGKR 186
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 549 bits (1416), Expect = 0.0 Identities = 179/582 (30%), Positives = 293/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILVPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I VP DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQIGGVPGVVSN-IGPVQGLKDNKEQEKYEKSQN---------------------- 341 GA GGVPG +SN P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 SFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (287), Expect = 8e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 11 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 169 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 7e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 169 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 228 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 229 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 285 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 286 KNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 345 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 346 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 380 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEP 481 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 9e-06 Identities = 59/306 (19%), Positives = 104/306 (33%), Gaps = 51/306 (16%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSKTTSKNTIKEERGSLKELLHHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTNSS 270 ++ + IK +L + + T + IF+ + Sbjct: 190 KK--------EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIR 241 Query: 271 SFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVFAITGLIVTP 320 + ++ M+ L I + G M+ +K L I +I+ P Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 321 VVFYGI 326 I Sbjct: 302 GTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.005 Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 17/183 (9%) Query: 198 KENPIDENHKPPNEESFLAIPTPYNTTLNDLEPQEGLVQISPHPPTHYTIYPKKNRFNDL 257 N + + P E+ + T TT N+++ P+ + + R ++ Sbjct: 973 NVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADV---------PSVPSNNEEIARVDEA 1023 Query: 258 TNPTNPTLEPQQETKEREPTLKKETPTM------PKPATLKPIMPASAPNTENHDKTENH 311 P P + T+ K+E+ T+ T + A + T+ + Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN 1083 Query: 312 KTPNHPIKEDDLQENPQKENQKENIEEKENLKEEKRETQNAPNFSPLTPTSAKKPVMVKE 371 + + + Q KE +E++E K E +TQ P + ++ V+ Sbjct: 1084 EVAQSGSETKETQTTETKETAT--VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 372 LSE 374 +E Sbjct: 1142 QAE 1144
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.6 bits (64), Expect = 0.014 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSAFFCGSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 48.4 bits (115), Expect = 2e-09 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 12/177 (6%) Query: 2 EKVEEKKIVEEKKEEKKEEKKVVEQKVEQKKIEEKKPIKKEFDPNQLSFLPKEVAPPRQE 61 E V E + E E +E VV +K + K + KP+KK P ++V P Sbjct: 71 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQP------KRDVKPVESR 124 Query: 62 NNKGLDNQTRRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDG 121 +N + + + R +++ +YP A L +G Sbjct: 125 PASPFENTAPARPTSSTATAAT---SKPVTSVASGPR---ALSRNQPQYPARAQALRIEG 178 Query: 122 TNAVEFYLHPNGDITDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 178 V+F + P+G + +++I+ M + ++ + +P + ++ I + Sbjct: 179 QVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 235
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.019 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Query: 23 NQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALTSLE--EVKEII 80 N+ E+ K E A ++ + T QI + K P+ +L LT E +V+++ Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 81 KSVSYSNNKSKHLISMAQKVVRDFKSVIPSTQKELMSLDGVGQKTANVV 129 +++ S + AQKV+ + PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.026 Identities = 22/167 (13%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 151 AQVKLNVFNGFSDVNNVKEKSAT--YRSNVATLEYSRQSIFLQVVQQYYEYFNNLARMIA 208 ++KL F +V+ + T + +T + + L + ++ E LAR+ Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 209 LQKKLEQIQTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQFALEQN 261 + ++ + + L K + + ++A L Y + ++ + Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 262 RLTLEYLTNLNVKNLKKTTIDAPILQLRE-RKDLVSLREQISALKYQ 307 + + +T K +D +LR+ ++ L +++ + + Sbjct: 286 KEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 4e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 25 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYNKIGGAVDK 84 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 85 NTLEGYEFT 93 N L + Sbjct: 163 NKLPELKLP 171 Score = 29.8 bits (67), Expect = 0.009 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 21/150 (14%) Query: 55 QAQSDSTEQQLIFAKKQYQRYNKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTILR 114 +++ S +++ + ++ +I + + T T +++ +++R Sbjct: 279 ESEILSAKEEYQLVTQLFKN--EILDKLRQTTDNIGLLTLELAKNE-----ERQQASVIR 331 Query: 115 APFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG-------D 165 AP + + GV L+ +V L + +K I + VG + Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 166 TYTYSIDGDSNQHEAKITKIYP--TVDENT 193 + Y+ G K+ I D+ Sbjct: 392 AFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 899 bits (2324), Expect = 0.0 Identities = 285/1040 (27%), Positives = 517/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVMNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQPIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-NYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFQVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G F ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTSQNPFRAKIFVQLKPLKERKKEHELGQFELMSALRKELRS 631 + + E FT + G +QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 LPEAKDLENINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 278 bits (711), Expect = 2e-77 Identities = 105/397 (26%), Positives = 179/397 (45%), Gaps = 14/397 (3%) Query: 2802 AGNNSIMWLNELFAAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2861 +G L L + +A + I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2862 ALQLNTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFTDATPNAMDVILKYSQRDKL 2921 L L+ SRL LS + F++RL +LK+QRF +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2922 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFVRG---VIVGGYAAYGYSGFYER--ITS 2976 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + + Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2977 SRSNNVDVGLYARAFVKKSELTFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNAR 3036 S +NN + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ R Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3037 VNYGYDFMFKNKSIILKPQIGLRYYYIGMSGLEGVMDNALYNQFKANADPSKKSVLTIDL 3096 +YGYDF F +++LKP +G+ Y ++G + + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3097 ALENRHYFNTNSYFYAIGGFGRDLLVNSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3156 +E R+Y+ SYFY G ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3157 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3193 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 32.3 bits (73), Expect = 0.041 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 701 SYTFDGINNAFNEDKFNGGSFNFNHAEQTNAFNNNSFNSGSFSFNAKQVDFNHNSFNGGV 760 SY+ + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 761 FNFNNTPKASFTDDTFNVNNQFKINGAQTD 790 + P ++ T N K +Q + Sbjct: 331 YKDK--PNDKPSNTTQNNAKNDKQESSQNN 358
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVGSERKSSFNVSLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNVS 253 IL+A+D + L + + N L ++ +V+TD+ MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADHRTKHLPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIHEMLKKTL 312 F++L IK LPV++ S+ ++ A A ++ K ++ E+ ++ + L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 313 SY 314 + Sbjct: 120 AE 121
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.023 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLMSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 154 bits (389), Expect = 2e-47 Identities = 72/81 (88%), Positives = 76/81 (93%) Query: 1 MEIQQTHRKMNRPLVSLVLAGALISAIPQESHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 MEIQQTHRK+NRPLVSL L GAL+S PQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEQANKTPDKPDKV 81 L WGLKQAE+ANKTPDKPDKV Sbjct: 61 LGWGLKQAEEANKTPDKPDKV 81
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1758 bits (4553), Expect = 0.0 Identities = 1034/1162 (88%), Positives = 1095/1162 (94%), Gaps = 10/1162 (0%) Query: 1 MKDAVGTYTLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKDAANRTTRVDFNAKNI 60 M++AVGTY LSGL NFTGGDLDVNMQKATLRLGQFNGNSFTSYKD+A+RTTRVDFNAKNI Sbjct: 136 MQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNI 195 Query: 61 SIDNFVEINNRVGSGAGRKASSTVLTLQASEKITSSKNAEISLYDGATLNLASNSVKLNG 120 IDNF+EINNRVGSGAGRKASSTVLTLQASE ITS +NAEISLYDGATLNLASNSVKL G Sbjct: 196 LIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMG 255 Query: 121 NVWMGRLQYVGAYLAPSYSTINTSKVTGEVDFNHLTVGDQNAAQAGIIASNKTHIGTLDL 180 NVWMGRLQYVGAYLAPSYSTINTSKVTGEV+FNHLTVGD NAAQAGIIASNKTHIGTLDL Sbjct: 256 NVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDL 315 Query: 181 WQSAGLNIIAPPEGGYKDKPNST---TSQSGAKNDKNESAKNDKQQSSNSNTEVINPPNN 237 WQSAGLNIIAPPEGGYKDKPN T+Q+ AKNDK ES++N NSNT+VINPPN+ Sbjct: 316 WQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQN------NSNTQVINPPNS 369 Query: 238 TQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIKVGGFKASLTTNAAHLNIGEGGV 297 QKTE +PTQVIDGPFAGGK+TVVNI+RINT ADGTI+VGGFKASLTTNAAHL+IG+GG+ Sbjct: 370 AQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKGGI 429 Query: 298 NLSNQASGRTLLVENLTGNITVNGPLRVNNQVGGYALAGSSANFEFKAGVDTKNGTATFN 357 NLSNQASGR+LLVENLTGNITV+GPLRVNNQVGGYALAGSSANFEFKAG DTKNGTATFN Sbjct: 430 NLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFN 489 Query: 358 NDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTGKVNINKLITASTNVAVKNFN 417 NDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVT KVNINKLITASTNVAVKNFN Sbjct: 490 NDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFN 549 Query: 418 INELIVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKSGEKLVINEFY 477 INEL+VKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSI+SGGVKFK GEKLVIN+FY Sbjct: 550 INELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFY 609 Query: 478 YSPWNYFDARNIKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVMDYSQFSNLTIQG 537 Y+PWNYFDARNIKNVEIT K A +PWGT+KLMFNNLTLGQNAVMDYSQFSNLTIQG Sbjct: 610 YAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQG 669 Query: 538 DFINNQGTINYLVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEH 597 DF+NNQGTINYLVRGG+VATLNVGNAAAM F+N++DSATGFY+PL+KINSAQDLIKN EH Sbjct: 670 DFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEH 729 Query: 598 VLLKAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAI 657 VLLKAKIIGYGNVS GT+ I+NVNL EQFKERLALYNNNNRMD CVVRNTDDIKACG AI Sbjct: 730 VLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAI 789 Query: 658 GNQSMVNNPDNYKYLIGKAWKNIGISKTANGSKISVYYLGNSTPTENGGNTTNLPTNTTN 717 GNQSMVNNP+NYKYL GKAWKNIGISKTANGSKISV+YLGNSTPTENGGNTTNLPTNTTN Sbjct: 790 GNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTN 849 Query: 718 NARSANYALVKNAPFA-HSATPNLVAINQHDFGTIESVFELANRSKDIDTLYTHSGAQGR 776 R A+YAL+KNAPFA +SATPNLVAINQHDFGTIESVFELANRS DIDTLY +SGAQGR Sbjct: 850 KVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTLYANSGAQGR 909 Query: 777 DLLQTLLIDSHDAGYARQMIDNTSTGEITKQLNAATDALNNVASLEHKQSGLQTLSLSNA 836 DLLQTLLIDSHDAGYAR MID TS EITKQLN AT LNN+ASLEHK SGLQTLSLSNA Sbjct: 910 DLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNA 969 Query: 837 MILNSRLVNLSRKHTNHINSFAQRLQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANA 896 MILNSRLVNLSR+HTNHI+SFA+RLQALK QRFASLESAAEVLYQFAPKYEKPTNVWANA Sbjct: 970 MILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANA 1029 Query: 897 IGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNF 956 IGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNF Sbjct: 1030 IGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNF 1089 Query: 957 GVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLQDLNQSYHYLAYSATARASYGYDFA 1016 GVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALL+DLNQSY+YLAYSA RASYGYDFA Sbjct: 1090 GVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFA 1149 Query: 1017 FFRNALVLKPSVGVSYNHLGSTNFKSNSQSQVALKNGASSQHLFNANANVEARYYYGDTS 1076 FFRNALVLKPSVGVSYNHLGSTNFKSNS +VALKNGASSQHLFNA+ANVEARYYYGDTS Sbjct: 1150 FFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANVEARYYYGDTS 1209 Query: 1077 YFYLHAGVLQEFAHFGSNDVASLNTFKINAARSPLSTYARAMMGGELRLAKEVFLNLGVV 1136 YFY++AGVLQEFA+FGS++ SLNTFK+NA R+PL+T+AR MMGGEL+LAKEVFLNLG V Sbjct: 1210 YFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLAKEVFLNLGFV 1269 Query: 1137 YLHNLISNASHFASNLGMRYSF 1158 YLHNLISN HFASNLGMRYSF Sbjct: 1270 YLHNLISNIGHFASNLGMRYSF 1291
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 25.2 bits (55), Expect = 0.042 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Query: 12 LKDALIDYLFEKGFDDFFYV--ECYKYAASSLLLSQKEQVSGRKDYAKFKLFLSEEVALP 69 L+ A + + F Y + +SSL+ K+ A+F + V Sbjct: 98 LQMANTNKTLASDLETVFLTTSTEYSFLSSSLV----------KEVARFGGNVEHFVPSH 147 Query: 70 LAQALKNQF 78 +A AL +QF Sbjct: 148 VAAALYDQF 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 752 bits (1943), Expect = 0.0 Identities = 225/1044 (21%), Positives = 464/1044 (44%), Gaps = 42/1044 (4%) Query: 5 IIEFSLRQRVIVIVGVILILFFGTYSFINTPVDAFPDISPTQVKIILKLPGSSPEEMENN 64 + F +R+ + V I+++ G + + PV +P I+P V + PG+ + +++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 IVRPLELELLGLKGQKSLRSISKYSIS-DITIDFDDSVDIYLARNIVNERLSSVMKDLPV 123 + + +E + G+ + S S + S IT+ F D +A+ V +L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEGGMAPIVTPLSDIFMF----TIDGNITEIEKRQLLDFVIRPQLRMISGVADVNSIGG 179 V+ + S M + + T+ + + ++ L ++GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FSRAFVIVPDFNDMARLGVSISDLESAVRVNLRNSGAGRVDR----DGETFLVKI--QTA 233 A I D + + + ++ D+ + ++V AG++ G+ I QT Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 SLSLEDIGKITV--STNLGHLHIKDFAKVISQSRTRLGFVTKDGVGETTEGLVLSLKEAN 291 + E+ GK+T+ +++ + +KD A+V +G + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 292 TKEIIAQVYQKLEELKPLLPSGVSINVFYDRSEFTQKAIATVSKTLIEAVVLIIITLFLF 351 + + KL EL+P P G+ + YD + F Q +I V KTL EA++L+ + ++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LGNLRASVAVGVILPLSLSVAFIFIKLNNLTLNLMSLGGLIIAIGMLIDSAVVVVENAFE 411 L N+RA++ + +P+ L F + ++N +++ G+++AIG+L+D A+VVVEN E Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV-E 417 Query: 412 KLSANTKTTKLHAIYRSCKEIAVSVVSGVVIIIVFFVPILTLQGLEGKMFRPLAQSIVYA 471 ++ K A +S +I ++V +++ F+P+ G G ++R + +IV A Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 472 LLGTLVLSITIIPVVSSLVLK--ATPHSET---FLTRFLNRIYAPLLEFFVRNPKKVI-- 524 + ++++++ + P + + +LK + H E F F N + + + + K++ Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWF-NTTFDHSVNHYTNSVGKILGS 536 Query: 525 ----LGAFVFLIA-SLSLFPFVGKNFMPALDEGDVVLSVETTPSISLDQSKDLILNIESA 579 L + ++A + LF + +F+P D+G + ++ + ++++ ++ + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 580 IKKHVKEVKTIVARTGSDELGLDLGGLNQTDTFISFIPKKEWSVKNKDELL-EKIMDSLK 638 K+ K V G G Q + ++F+ K W +N DE E ++ K Sbjct: 597 YLKNEKANVESVFTVN----GFSFSGQAQ-NAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 639 -DFKGINFSFTQPIEM-RISEMLTGVRGDLA-VKIFGDDISALNKLSFQIAQVL-KGIKG 694 + I F P M I E+ T D + G AL + Q+ + + Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711 Query: 695 SSEVLTTLNEGVNYLYVTPNKEAMANVGITSDEFSKFLKSALEGLIVDVIPTGISRTPVM 754 V E + ++E +G++ + ++ + +AL G V+ + Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771 Query: 755 IRQESDFASSITKIKSLALTSKYGVLVPITSIAKIEEVDGPVSIVREDSRRMSVVRSNVV 814 ++ ++ F + L + S G +VP ++ V G + R + ++ Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 815 GRDLNSFVEEAKKVIAQNVKLPPSYYITYGGQFENQQRANKRLSTVIPLSILAIFFILFF 874 + + +A KLP + G ++ + + ++ +S + +F L Sbjct: 832 PGTSSGDAMALMENLA--SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 875 TFKSIPLALLILLNIPFAVTGGLIALFAVGEYISVPASVGFIALFGIAVLNGVVMIGYFK 934 ++S + + ++L +P + G L+A + V VG + G++ N ++++ + K Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 935 ELLL-QGKSVEECVLLGAKRRLRPVLMTACIAGLGLIPLLFSHSVGSEVQKPLAIVVLGG 993 +L+ +GK V E L+ + RLRP+LMT+ LG++PL S+ GS Q + I V+GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 994 LVTSSALTLLLLPPMFMLIAKKIK 1017 +V+++ L + +P F++I + K Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.026 Identities = 13/130 (10%), Positives = 48/130 (36%), Gaps = 31/130 (23%) Query: 3 RALWWLMLMGVLGVFLEAKEYPEIVLEEKNLQPMGLKVIKLDKEIFSKGLPFNAYIDFDS 62 R + + ++ ++ F+ + + +++ N + Sbjct: 58 RLVAYFIMGFLVIAFILSV------------------LGQVEI-----VATANGKLTHSG 94 Query: 63 KSSVVQSLSFDASVVAVYKREGEQVKAGDAICEVSSID-------LSNLYFELQNNQNKL 115 +S ++ + ++ V + +EGE V+ GD + +++++ + + + Q + Sbjct: 95 RSKEIKPIE-NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRY 153 Query: 116 KIAKDITKKD 125 +I + + Sbjct: 154 QILSRSIELN 163
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.3 bits (58), Expect = 0.021 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 10/40 (25%) Query: 5 DTLLQR---LEKLSM--LEIKDEHKES-----VKGHLAEI 34 D + +++L M EIK E+KE +K + Sbjct: 202 DYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241