References of published S. aureus transcriptomes in chronological order:

  
     
Dunman, P. M., Murphy, E., Haney, S., Palacios, D., Tucker-Kellogg, G., Wu, S., Brown, E. L., Zagursky, R. J., Shlaes, D., Projan, S. J. Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci. J Bacteriol 2001, 183(24): 7341-53 Experiments Pubmed
Said-Salim, B., Dunman, P. M., McAleese, F. M., Macapagal, D., Murphy, E., McNamara, P. J., Arvidson, S., Foster, T. J., Projan, S. J., Kreiswirth, B. N. Global regulation of Staphylococcus aureus genes by Rot. J Bacteriol 2003, 185(2): 610-9 Experiments Pubmed
Kuroda, M., Kuroda, H., Oshima, T., Takeuchi, F., Mori, H., Hiramatsu, K. Two-component system VraSR positively modulates the regulation of cell-wall biosynthesis pathway in Staphylococcus aureus. Mol Microbiol 2003, 49(3): 807-21 Experiments Pubmed
Utaida, S. Dunman, P. M. Macapagal, D. Murphy, E. Projan, S. J. Singh, V. K. Jayaswal, R. K. Wilkinson, B. J. Genome-wide transcriptional profiling of the response of Staphylococcus aureus to cell-wall-active antibiotics reveals a cell-wall-stress stimulon. Microbiology 2003, 149(Pt 10): 2719-32 Experiments Pubmed
Mongodin, E. Finan, J. Climo, M. W. Rosato, A. Gill, S. Archer, G. L. Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin. J Bacteriol 2003, 185(15) : 4638-43 Experiments Pubmed
Bischoff, M., Dunman, P., Kormanec, J., Macapagal, D., Murphy, E., Mounts, W., Berger-Bachi, B., Projan, S. Microarray-based analysis of the Staphylococcus aureus sigmaB regulon. J Bacteriol 2004, 186(13): 4085-99 Experiments Pubmed
McCallum, N., Bischoff, M., Maki, H., Wada, A., Berger-Bachi, B. TcaR, a putative MarR-like regulator of sarS expression. J Bacteriol 2004, 186(10): 2966-72 Experiments Pubmed
Weinrick, B. Dunman, P. M. McAleese, F. Murphy, E. Projan, S. J. Fang, Y. Novick, R. P. Effect of mild acid on gene expression in Staphylococcus aureus. J Bacteriol 2004, 186(24): 8407-23 Experiments Pubmed
Beenken, K. E. Dunman, P. M. McAleese, F. Macapagal, D. Murphy, E. Projan, S. J. Blevins, J. S. Smeltzer, M. S. Global gene expression in Staphylococcus aureus biofilms. J Bacteriol 2004, 186(14): 4665-84 Experiments Pubmed
Liang, X., Zheng, L., Landwehr, C., Lunsford, D., Holmes, D., Ji, Y. Global regulation of gene expression by ArlRS, a two-component signal transduction regulatory system of Staphylococcus aureus. J Bacteriol 2005, 187(15): 5486-92 Experiments Pubmed
Korem, M., Gov, Y., Kiran, M. D., Balaban, N. Transcriptional profiling of target of RNAIII-activating protein, a master regulator of staphylococcal virulence. Infect Immun 2005, 73(10): 6220-8 Experiments Pubmed
Resch, A. Rosenstein, R. Nerz, C. Gotz, F. Differential gene expression profiling of Staphylococcus aureus cultivated under biofilm and planktonic conditions. Appl Environ Microbiol 2005, 71(5): 2663-76 Experiments Pubmed
Cui, L. Lian, J. Q. Neoh, H. M. Reyes, E. Hiramatsu, K. DNA microarray-based identification of genes associated with glycopeptide resistance in Staphylococcus aureus. Antimicrob Agents Chemother 2005, 49(8): 3404-13 Experiments Pubmed
Luong, T. T., Dunman, P. M., Murphy, E., Projan, S. J., Lee, C. Y. Transcription Profiling of the mgrA Regulon in Staphylococcus aureus. J Bacteriol 2006, 188(5): 1899-910 Experiments Pubmed
Yang, S. J., Dunman, P. M., Projan, S. J., Bayles, K. W. Characterization of the Staphylococcus aureus CidR regulon: elucidation of a novel role for acetoin metabolism in cell death and lysis. Mol Microbiol 2006, 60(2): 458-68 Experiments Pubmed
Cassat, J. Dunman, P. M. Murphy, E. Projan, S. J. Beenken, K. E. Palm, K. J. Yang, S. J. Rice, K. C. Bayles, K. W. Smeltzer, M. S. Transcriptional profiling of a Staphylococcus aureus clinical isolate and its isogenic agr and sarA mutants reveals global differences in comparison to the laboratory strain RN6390. Microbiology 2006, 152(Pt 10):3075-3090 Experiments Pubmed
Chang, W. Toghrol, F. Bentley, W. E. Toxicogenomic response of Staphylococcus aureus to peracetic acid. Environ Sci Technol 2006, 40(16): 5124-31 Experiments Pubmed
Anderson, K. L. Roberts, C. Disz, T. Vonstein, V. Hwang, K. Overbeek, R. Olson, P. D. Projan, S. J. Dunman, P. M. Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover. J Bacteriol 2006, 188(19): 6739-56 Experiments Pubmed
Michel, A. Agerer, F. Hauck, C. R. Herrmann, M. Ullrich, J. Hacker, J. Ohlsen, K. Global regulatory impact of ClpP protease of Staphylococcus aureus on regulons involved in virulence, oxidative stress response, autolysis, and DNA repair. J Bacteriol 2006, 188(16): 5783-96 Experiments Pubmed
Chang, W. Small, D. A. Toghrol, F. Bentley, W. E. Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide. J Bacteriol 2006, 188(4): 1648-59 Experiments Pubmed
Richardson, A. R. Dunman, P. M. Fang, F. C. The nitrosative stress response of Staphylococcus aureus is required for resistance to innate immunity. Mol Microbiol 2006, 61(4): 927-39 Experiments Pubmed
Renzoni, A. Barras, C. Francois, P. Charbonnier, Y. Huggler, E. Garzoni, C. Kelley, W. L. Majcherczyk, P. Schrenzel, J. Lew, D. P. Vaudaux, P. Transcriptomic and functional analysis of an autolysis-deficient, teicoplanin-resistant derivative of methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother 2006, 50(9): 3048-61 Experiments Pubmed
Scherl, A. Francois, P. Charbonnier, Y. Deshusses, J. M. Koessler, T. Huyghe, A. Bento, M. Stahl-Zeng, J. Fischer, A. Masselot, A. Vaezzadeh, A. Galle, F. Renzoni, A. Vaudaux, P. Lew, D. Zimmermann-Ivol, C. G. Binz, P. A. Sanchez, J. C. Hochstrasser, D. F. Schrenzel, J. Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers. BMC Genomics 2006, 7 : 296 Experiments Pubmed
McCallum, N. Spehar, G. Bischoff, M. Berger-Bachi, B. Strain dependence of the cell wall-damage induced stimulon in Staphylococcus aureus. Biochim Biophys Acta 2006, 1760(10) : 1475-81 Experiments Pubmed
McAleese, F. Wu, S. W. Sieradzki, K. Dunman, P. Murphy, E. Projan, S. Tomasz, A. Overexpression of genes of the cell wall stimulon in clinical isolates of Staphylococcus aureus exhibiting vancomycin-intermediate- S. aureus-type resistance to vancomycin. J Bacteriol 2006, 188(3) : 1120-33 Experiments Pubmed
Brady, R. A. Leid, J. G. Camper, A. K. Costerton, J. W. Shirtliff, M. E. Identification of Staphylococcus aureus proteins recognized by the antibody-mediated immune response to a biofilm infection. Infect Immun 2006, 74(6) : 3415-26 Experiments Pubmed
Rogasch, K. Ruhmling, V. Pane-Farre, J. Hoper, D. Weinberg, C. Fuchs, S. Schmudde, M. Broker, B. M. Wolz, C. Hecker, M. Engelmann, S. Influence of the two-component system SaeRS on global gene expression in two different Staphylococcus aureus strains. J Bacteriol 2006, 188(22) : 7742-58 Experiments Pubmed
Seggewiss, J., Becker, K., Kotte, O., Eisenacher, M., Yazdi, M.R., Fischer, A., McNamara, P., Al Laham, N., Proctor, R., Peters, G., Heinemann, M., von Eiff, C. Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small-colony-variant phenotype. J Bacteriol 2006, 188(22): 7765-77 Experiments Pubmed
Kuroda, H. Kuroda, M. Cui, L. Hiramatsu, K. Subinhibitory concentrations of beta-lactam induce haemolytic activity in Staphylococcus aureus through the SaeRS two-component system. FEMS Microbiol Lett 2007, 268(1): 98-105 Experiments Pubmed
Riordan, J. T. Muthaiyan, A. Van Voorhies, W. Price, C. T. Graham, J. E. Wilkinson, B. J. Gustafson, J. E. Response of Staphylococcus aureus to salicylate challenge. J Bacteriol 2007, 189(1): 220-7 Experiments Pubmed
Sobral, R. G. Jones, A. E. Des Etages, S. G. Dougherty, T. J. Peitzsch, R. M. Gaasterland, T. Ludovice, A. M. de Lencastre, H. Tomasz, A. Extensive and genome-wide changes in the transcription profile of Staphylococcus aureus induced by modulating the transcription of the cell wall synthesis gene murF. J Bacteriol 2007, 189(6): 2376-91 Experiments Pubmed
Herbert, S., Bera, A., Nerz, C., Kraus, D., Peschel, A., Goerke, C., Meehl, M., Cheung, A., Gotz, F. Molecular basis of resistance to muramidase and cationic antimicrobial Peptide activity of lysozyme in staphylococci. PLoS Pathog 2007, 3(7): e102 Experiments Pubmed
Cirz, R. T., Jones, M. B., Gingles, N. A., Minogue, T. D., Jarrahi, B., Peterson, S. N., Romesberg, F. E. Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin. J Bacteriol 2007,  Experiments Pubmed
Bore, E., Langsrud, S., Langsrud, O., Rode, T. M., Holck, A. Acid-shock responses in Staphylococcus aureus investigated by global gene expression analysis. Microbiology 2007, 153(Pt 7): 2289-303 Experiments Pubmed
Fuchs, S., Pane-Farre, J., Kohler, C., Hecker, M., Engelmann, S. Anaerobic gene expression in Staphylococcus aureus. J Bacteriol 2007, 189(11): 4275-89 Experiments Pubmed
Schlag, S., Nerz, C., Birkenstock, T. A., Altenberend, F., Gotz, F. Inhibition of staphylococcal biofilm formation by nitrite. J Bacteriol 2007, 189(21): 7911-9 Experiments Pubmed
Chang, M. W., Toghrol, F., Bentley, W. E. Toxicogenomic response to chlorination includes induction of major virulence genes in Staphylococcus aureus. Environ Sci Technol 2007, 41(21): 7570-5 Experiments Pubmed
Hubscher, J., Jansen, A., Kotte, O., Schafer, J., Majcherczyk, P. A., Harris, L. G., Bierbaum, G., Heinemann, M., Berger-Bachi, B. Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus. BMC Genomics 2007, 8: 307 Experiments Pubmed
Wang, D., Yu, L., Xiang, H., Fan, J., He, L., Guo, N., Feng, H., Deng, X. Global transcriptional profiles of Staphylococcus aureus treated with berberine chloride. FEMS Microbiol Lett 2008, 279(2): 217-25 Experiments Pubmed
Jang, H. J., Chang, M. W., Toghrol, F., Bentley, W. E. Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus. Appl Microbiol Biotechnol 2008, 78(4): 695-707 Experiments Pubmed
Delgado, A., Zaman, S., Muthaiyan, A., Nagarajan, V., Elasri, M. O., Wilkinson, B. J., Gustafson, J. E. The fusidic acid stimulon of Staphylococcus aureus. J Antimicrob Chemother 2008, 62(6): 1207-14 Experiments Pubmed
Muthaiyan, A., Silverman, J.A., Jayaswal, R.K., Wilkinson, B.J. Transcriptional profiling reveals that daptomycin induces the Staphylococcus aureus cell wall stress stimulon and genes responsive to membrane depolarization. Antimicrob Agents Chemother 2008, 52(3):980-90 Experiments Pubmed
Nagarajan, V., Smeltzer, M. S., Elasri, M. O. Genome-scale transcriptional profiling in Staphylococcus aureus : bringing order out of chaos. FEMS Microbiol Lett 2009, 295(2): 204-210 Experiments Pubmed