#ScoreSignatures
#Thu Dec 09 10:43:26 EST 2010
JVMLevel=
LSID=urn\:lsid\:8080.root.cagt.igsp.duke.edu\:genepatternmodules\:4\:16
author=Jeffrey Chang, Duke University
commandLine=/usr/local/bin/python /opt/SIGNATURE/scoresig.py -z --libpath\=/opt/SIGNATURE --pybinreg\=/opt/SIGNATURE/pybinreg.py --python\=/usr/local/bin/python --binreg\=/opt/SIGNATURE/BinReg2.0 --matlab\=/usr/local/bin/matlab --arrayplot\=/opt/SIGNATURE/arrayplot.py --povray\=/usr/local/bin/povray --cluster\=/usr/local/bin/cluster --sigdb_path /opt/SIGNATURE/sigdb <rma_expression_file> <mas5_expression_file>
cpuType=any
description=Score a series of signatures on a gene expression data set.
fileFormat=
language=any
name=ScoreSignatures
os=any
p1_MODE=IN
p1_TYPE=FILE
p1_default_value=
p1_description=RMA normalized expression data set. PCL, CDT, GCT, RES, ODF format.
p1_fileFormat=cdt;gct,res,odf;pcl
p1_name=rma_expression_file
p1_optional=on
p1_prefix_when_specified=-r
p1_type=java.io.File
p1_value=
p2_MODE=IN
p2_TYPE=FILE
p2_default_value=
p2_description=MAS5 normalized expression data set. PCL, CDT, GCT, RES, ODF format.
p2_fileFormat=cdt;gct,res,odf;pcl
p2_name=mas5_expression_file
p2_optional=on
p2_prefix_when_specified=-m
p2_type=java.io.File
p2_value=
p3_default_value=
p3_description=Dummy variable.  IF YOU SEE THIS, THERE IS AN ERROR WITH YOUR SETUP.
pipelineModel=
privacy=public
quality=development
requiredPatchLSIDs=
requiredPatchURLs=
serializedModel=
taskType=SIGNATURE
userid=
version=
