#FindSubtypes
#Wed Jan 05 18:45:09 GMT-06:00 2011
JVMLevel=
LSID=urn\:lsid\:8080.genepattern.megatron.uth.tmc.edu\:genepatternmodules\:927\:7
author=Jeffrey Chang, Joseph Lucas, Mike Gatza, Joseph Nevins, Duke University
commandLine=/usr/local/bin/python /opt/SIGNATURE/find_subtypes.py -z --libpath\=/opt/SIGNATURE --selap\=/opt/SIGNATURE/SELAPver3 --matlab\=/usr/local/bin/matlab --python\=/usr/local/bin/python --arrayplot\=/opt/SIGNATURE/arrayplot.py --cluster\=/usr/local/bin/cluster -p <penalty> <dataset>
cpuType=any
description=Find subtypes of samples within a gene expression data set.
fileFormat=
language=any
name=FindSubtypes
os=any
p1_MODE=IN
p1_TYPE=FILE
p1_default_value=
p1_description=File containing pathway predictions.  Should be in PCL or GCT format.
p1_fileFormat=cdt;gct;pcl
p1_name=dataset
p1_optional=
p1_prefix_when_specified=
p1_type=java.io.File
p1_value=
p2_default_value=-33
p2_description=Penalty (should be <\= 0) tunes the number of subtypes.  Higher values mean more subtypes.
p2_fileFormat=
p2_name=penalty
p2_optional=
p2_prefix_when_specified=
p2_type=java.lang.Float
p2_value=
pipelineModel=
privacy=public
quality=development
requiredPatchLSIDs=
requiredPatchURLs=
serializedModel=
taskType=SIGNATURE
userid=
version=
