COMPLETE SIGNATURE DISTRIBUTION
===============================
MANIFEST          This file.

pybinreg.py       Script for CreateSignature.
scoresig.py       Script for ScoreSignatures.
bfrmnorm.py       Script for BFRMNormalize.
bfrmfactor.py   
find_subtypes.py
arrayplot.py      Script for making heatmaps.

imod_ScoreSignatures.py  For GenePattern module.

arrayio/          Python library for reading/writing array files.
genomicode/       Python library with miscellaneous functions.

sigdb/            Signature database (distributed separately in SIGDB).
www/              Webpage (distributed separately in SIGDB).
modules/          GenePattern modules.

bfrm64            Linux binary for BFRM.
BinReg2.0         BinReg 2.0
BFRM_normalize    BFRM normalization.
BFRM_project      BFRM projection.
SELAPver3         For subtypes.
BatchAdjust       DWD normalization.

gp-3.2.0_jchang_101203.patch    Patches for the GenePattern source code.
gp-3.2.3_jchang_101203.patch








Some of the software libraries are not distributed as part of this
package and must be obtained from their owners.
* bfrm64
  This is available from Mike West (mike@stat.duke.edu) at:
  http://www.stat.duke.edu/research/software/west/bfrm/
* BinReg2.0
  This is available from Bill Barry (bill.barry@duke.edu) at:
  http://www.duke.edu/~dinbarry/BINREG/
* BFRM_normalize
  This is available from Joseph Lucas (joseph.lucas@duke.edu).
* BFRM_project
  This is available from Joseph Lucas (joseph.lucas@duke.edu).
* SELAPver3
  This is available from Joseph Lucas (joseph.lucas@duke.edu).
* BatchAdjust
  This must be obtained from the DWD website.
  https://genome.unc.edu/dwd/
