COMBOSA |
COMBOSA (Coloring Of Molecules Based On Sequence Alignment) is used to color a three dimensional representation of a protein according to the results of a sequence alignment. The program accepts a group of aligned sequences in FASTA or GDE format (one of the sequences must have a solved three dimensional structure), and it generates a script that can be used by a molecular visualization program (RasMol). The script adjusts the color and appearance of the molecule so that conserved residues are highlighted.
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