Alignment Annotator
cd /home/people/christo/public_html/strap/AA2/tmp/apache/x5a0ae26e54_13ad/; less -R stdout.txtAuthor: christoph
DAS_features CSA%20-%20extended uniprot cbs_total netphos netoglyc , UNIPROT:P29590
GFF P25787 UniProtKB Modified residue 24 24 . . . Note=Phosphotyrosine
GFF http://server/path/myGffFile.gff
GFF_expasy_features *
aa_sequence -VLSAAERAQVKAAWGKI--QAGAHGAEALERMFLGFPTTKTYPF, Xenopus
accession_id UNIPROT:HSLV_ECOLI , hslv_ecoli
add_annotation myProtein.pdb/myAnnotation1, Balloon, Another line
add_compound PDB:1gd2_A PDB:1gd2_B, 1gd2_E.pdb
add_xref PDB:1NED , hslv_ecoli
align *
balloon_text Example with html <b>bold face</b>. This is a greater than sign: >, protein1
balloon_text bla bla This is a greater than sign: >, protein1
balloon_text NULL , protein1
echo Hello world
feature_colors Modified_residue=#FF2222,#FF0000 Phosphorylated_residue=#AAaa00 Glycosylated_residue=#00ffFF
icon http://www.bioinformatics.org/strap/images/dog.png , protein
icon NULL , protein
icon data:image/gif;base64,R0lGODlhGgAaAIABADMzM////yH5BAEKAAEALAAAAAAaABoAAAI5jI+py+0Po0SgWmpry9nwq3yimIwmh51nqo5s+71wd8yuPIc2Xe7AZnvkIK3JauJBIVlLXfMJjUIKADs= , 4 5
new_selection my_protein/N-terminus, group_test, 1-20
new_selection my_protein/a_selection, group_test, 10:-20: 30:
project_coordinates PDB:1BOR_A , UNIPROT:P29590
project_coordinates AUTO , UNIPROT:P29590
project_coordinates NULL , UNIPROT:P29590
-0.51 -0.69 0.50 0.22 0.45 0.86 -0.82 0.55 -0.80 91.15 25.13 55.68 , protein
NULL, protein
secondary_structure ---HHHHHH---HHHHH---EEEEEEEEEE----EEEEEE , Xenopus
select_3D ViewID
select_3D ViewID , subtilisin
select_3D ViewID , subtilisin/100-200
set_characters_per_line 60
color #00FF00 , protein1
color #00FF0066 , protein1
set_color_mode hydropathy
set_conservation_threshold 70
superimpose *
cds join(10 20...30) , protein
cds complement(join(10 20...30)) , myProtein
cds 2 , myProtein