Export alignment ...

[Menu-bar>Align>Export alignment] The sequence alignment can be exported in various formats:
  1. HTML
  2. HSSP-format is not frequently used: http://www.predictprotein.org/Dexa/out_hssp.html
  3. MSF-format: http://bmerc-www.bu.edu/examples/output/seqlist.msf.html
  4. ClustalW-format: http://www.molecularevolution.org/mbl/resources/fileformats/