Find proteins with a similar fold
For a given protein the following steps are performed:
-
If no PDB ID is associated with the protein, the most similar PDB structure is identified using Blast.
This step is time consuming.
-
Using the PDB id, lists of structurally similar proteins are retrieved from
two different Web-services.
- GangstaPlus* 17118190
- Dali* 8578593
Similarity is generally based on structural similarity
irrespectively of the amino acid sequence.