Dragging proteins and alignments into STRAP: List of supported data sources

Ensembl

Interpro

Please click the following link to search for zinc finger proteins in Interpro. search zinc. Then drag the links from the result list into STRAP.

PFAM-links can be dragged directly into STRAP to load the multiple sequence alignment. For examples browse the Pfam site.
Note:Multiple sequence files in MSF, Stockholm or Fast and Nexus format are recognized by the file content and not by the file name. Other formats are recognized by the file ending ".clustalw", ".nexus" or ".aln";

The following page is an example for a search result in ProDom: Search "finger"
The ProDom entries in this page can be dragged directly into STRAP.

NCBI-3D-Structure

Dragging ncbi 3D structuresint STRAP, the 3D-structure is loaded after a few seconds.
  1. 2JUN A 0
    Protein sequence A, Structure Of The Mid1 Tandem B-Boxes Reveals An Interaction Reminiscent Of Intermolecular Ring Heterodimers [sdi:267922]
  2. 3C4D B 2
    Protein sequence B, Domain 2, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 [sdi:267714]
  3. cn3d 29261
...

NCBI-Proteins

AAC20075
hexokinase [Rattus norvegicus]
gi|3207508|gb|AAC20075.1|[3207508]

AAB57759
hexokinase [Rattus norvegicus]
gi|3207508|gb|AAC20075.1|[3207508]

P33284
hexokinase [Mus musculus]
gi|1850140|gb|AAB57759.1|[1850140]

Q26609
hexokinase
i|38605692|sp|P33284.3|HXK_KLULA[38605692]

NCBI Nucleotides

When dragging nucleotide files into STRAP, the sequence can be translated to protein using the nucleotide tool-button at the bottom bar of STRAP. 
      gi|108141592|AAPY01575346.1   Tupaia belangeri cont1.575345, whole genome shotgun sequence
      gi|41784453|AADD01124343.1    Homo sapiens chromosome 12 WGSA:124342 contig 124342 scaffold 207, whole genome shotgun sequence
      gi|68973749|AADB02015065.1    Homo sapiens chromosome 12 CRA_219000002700133, whole genome shotgun sequence
      gi|20599786|CAAA01035248.1    Mus musculus whole genome shotgun assembly contig 39563, whole genome shotgun sequence

Expasy Protein Blast result

EBI Nucleotides

When dragging nucleotide files into STRAP, the sequences can be translated to protein using the nucleotide tool-button at the bottom bar of STRAP. 
      Pairwise Alignment 1 EM_OM:BC102554; BC102554 Bos taurus similar to Proteasome...   600  3.0e-19   1
      Pairwise Alignment 2 EM_EST:EH146791; EH146791 LB01192.CR.1_N07 GC_BGC-11 Bos ...   600  3.3e-19   1
      Pairwise Alignment 3 EM_EST:DT844780; DT844780 LB004104.CR_M11 GC_BGC-04 Bos t...   600  3.3e-19   1
      Pairwise Alignment 4 EM_EST:DV845554; DV845554 LB01223.CR_O06 GC_BGC-12 Bos ta...   600  3.3e-19   1
      Pairwise Alignment 5 EM_EST:DR712536; DR712536 LB0051.CR_H23 GC_BGC-05 Bos tau...   600  3.3e-19   1
      Pairwise Alignment 6 EM_EST:EH375528; EH375528 LB011127.CR_H12 GC_BGC-11 Bos t...   600  3.3e-19   1
      Pairwise Alignment 7 EM_EST:EH375565; EH375565 LB011127.CR_H07 GC_BGC-11 Bos t...   600  3.3e-19   1
      Pairwise Alignment 8 EM_EST:CV983660; CV983660 UMC-bof_0B01-001-h03 Ovarian Fo...   600  3.3e-19   1
          

      btk:BT9727_1829 isp; intracellular serine protease...
      dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexi...
      btl:BALH_1771 intracellular serine protease            
      bcz:BCZK1813 isp; intracellular serine protease
      syr:SynRCC307_0915 uncharacterized protein with ..
      syr:SynRCC307_0913 uncharacterized protein with ...
      gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin...

Sequence Retrieval System SRS

Various links

Technical details

White space in Windows-Path: Normally, STRAP loads the protein from the file that has been dragged and the file contents does not need to be copied into the Working directory. However, on Windows directory names often contain white space. Since white space is generally not used in file and directory names, this may cause problems with Bioinformatics programs that are not prepared for this. To avoid this problem, a copy of these files in the working directory is used rather rather than the original file.