Dragging proteins and alignments into STRAP: List of supported data sources
Please click the following link to search for zinc finger proteins in Interpro.
Then drag the links from the result list into STRAP.
PFAM-links can be dragged directly into STRAP to load the multiple sequence alignment.
For examples browse the Pfam site.
Note:Multiple sequence files in MSF, Stockholm or Fast and
format are recognized by the file content and not by the file name.
Other formats are recognized by the file ending ".clustalw", ".nexus" or ".aln";
The following page is an example for a search result in ProDom:
The ProDom entries in this page can be dragged directly into STRAP.
Dragging ncbi 3D structuresint STRAP, the 3D-structure is loaded after a few seconds.
- 2JUN A 0
Protein sequence A, Structure Of The Mid1 Tandem B-Boxes Reveals An Interaction Reminiscent Of Intermolecular Ring Heterodimers
- 3C4D B 2
Protein sequence B, Domain 2, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203
- cn3d 29261
When dragging nucleotide files into STRAP, the sequence can be translated to protein using the nucleotide tool-button at the bottom bar of STRAP.
gi|108141592|AAPY01575346.1 Tupaia belangeri cont1.575345, whole genome shotgun sequence
gi|41784453|AADD01124343.1 Homo sapiens chromosome 12 WGSA:124342 contig 124342 scaffold 207, whole genome shotgun sequence
gi|68973749|AADB02015065.1 Homo sapiens chromosome 12 CRA_219000002700133, whole genome shotgun sequence
gi|20599786|CAAA01035248.1 Mus musculus whole genome shotgun assembly contig 39563, whole genome shotgun sequence
Expasy Protein Blast result
- P0A7C1 HSLV_SHIFL ATP-dependent protease hslV (EC 3.4.25.-) (...
- P0A7B8 HSLV_ECOLI ATP-dependent protease hslV (EC 3.4.25.-) (...
- P0A7B9 HSLV_ECOL6 ATP-dependent protease hslV (EC 3.4.25.-) (...
- P0A7C0 HSLV_ECO57 ATP-dependent protease hslV (EC 3.4.25.-) (...
- Q3YV46 _SHISS Heat shock protein hslVU, proteasome-related pep...
- Q31U58 _SHIBS Heat shock protein hslVU, proteasome-related pep...
- Q32AA5 _SHIDS Heat shock protein hslVU, proteasome-related pep...
When dragging nucleotide files into STRAP, the sequences can be translated to protein using the nucleotide tool-button at the bottom bar of STRAP.
EM_OM:BC102554; BC102554 Bos taurus similar to Proteasome... 600 3.0e-19 1
EM_EST:EH146791; EH146791 LB01192.CR.1_N07 GC_BGC-11 Bos ... 600 3.3e-19 1
EM_EST:DT844780; DT844780 LB004104.CR_M11 GC_BGC-04 Bos t... 600 3.3e-19 1
EM_EST:DV845554; DV845554 LB01223.CR_O06 GC_BGC-12 Bos ta... 600 3.3e-19 1
EM_EST:DR712536; DR712536 LB0051.CR_H23 GC_BGC-05 Bos tau... 600 3.3e-19 1
EM_EST:EH375528; EH375528 LB011127.CR_H12 GC_BGC-11 Bos t... 600 3.3e-19 1
EM_EST:EH375565; EH375565 LB011127.CR_H07 GC_BGC-11 Bos t... 600 3.3e-19 1
EM_EST:CV983660; CV983660 UMC-bof_0B01-001-h03 Ovarian Fo... 600 3.3e-19 1
btk:BT9727_1829 isp; intracellular serine protease...
dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexi...
btl:BALH_1771 intracellular serine protease
bcz:BCZK1813 isp; intracellular serine protease
syr:SynRCC307_0915 uncharacterized protein with ..
syr:SynRCC307_0913 uncharacterized protein with ...
gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin...
Sequence Retrieval System SRS
White space in Windows-Path:
Normally, STRAP loads the protein from the file that has been dragged
and the file contents does not need to be copied into the Working directory.
However, on Windows directory names often contain white
space. Since white space is generally not used in file and
directory names, this may cause problems with Bioinformatics
programs that are not prepared for this.
To avoid this problem, a copy of these files in the
working directory is used rather rather than the original file.