charite.christo.strap.extensions
Class AbstractSubcellularLocation

java.lang.Object
  charite.christo.strap.extensions.AbstractSubcellularLocation

All Implemented Interfaces:

PredictSubcellularLocation

Direct Known Subclasses:

SubcellularLocationHum_mPloc, SubcellularLocationPLOC

public abstract class AbstractSubcellularLocation
extends java.lang.Object
implements PredictSubcellularLocation

Nested Class Summary

Nested classes/interfaces inherited from interface charite.christo.protein.PredictSubcellularLocation

PredictSubcellularLocation.Prediction

Field Summary

Fields inherited from interface charite.christo.protein.PredictSubcellularLocation

CENTRIOLE, CYTOSKELETON, CYTOSOL, ER, ERROR, GOLGI, HUMAN, LYSOSOME, MAX_VARIABLE, MEMBRANE, MICROSOME, MITO_MATRIX, NUCLEUS, PEROXISOME, SECRETED, SYNAPSE, UNKNOWN

Constructor Summary

AbstractSubcellularLocation()

Method Summary

abstract BA	computeOutput()
void	defineParameters(long opt, java.lang.String s)
PredictSubcellularLocation.Prediction[]	getCompartments()
PrgParas	getPrgParas()
byte[]	getResidueType()
java.lang.Object	getSharedInstance()
void	setOrganism(int organism)
void	setResidueType(byte[] aa)
void	setSharedInstance(java.lang.Object shared)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractSubcellularLocation

public AbstractSubcellularLocation()

Method Detail

setResidueType

public void setResidueType(byte[] aa)

Specified by:

setResidueType in interface PredictSubcellularLocation

getResidueType

public byte[] getResidueType()

getCompartments

public PredictSubcellularLocation.Prediction[] getCompartments()

Specified by:

getCompartments in interface PredictSubcellularLocation

computeOutput

public abstract BA computeOutput()

setOrganism

public void setOrganism(int organism)

Specified by:

setOrganism in interface PredictSubcellularLocation

getPrgParas

public final PrgParas getPrgParas()

setSharedInstance

public final void setSharedInstance(java.lang.Object shared)

getSharedInstance

public final java.lang.Object getSharedInstance()

defineParameters

public void defineParameters(long opt,
                             java.lang.String s)